BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029831
(187 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VY91|RR6_ARATH 30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis
thaliana GN=RPS6 PE=1 SV=1
Length = 207
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 85/120 (70%), Gaps = 3/120 (2%)
Query: 23 LSQLPSSPLFSFARSLKTFRTNAKSLLLHKKNSNSVSLTVKAQTLDFSGSFFEGGGFGSD 82
L + S PL SF+ SL+ F + +K + + + VK+Q LDFSG+FFEGG FGSD
Sbjct: 15 LPNVSSQPLLSFSHSLRPFISKSKPMCASIQKRDGSQFVVKSQALDFSGTFFEGG-FGSD 73
Query: 83 DDPTSVPPGSVGTATAIEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQNCLLLGVA 142
DDPTS P GS G +TA+EDK EPQCPPGLRQYETM VLRPDMSEDERL LTQ L VA
Sbjct: 74 DDPTS-PSGS-GVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVA 131
>sp|P82403|RR6_SPIOL 30S ribosomal protein S6 alpha, chloroplastic (Fragment)
OS=Spinacia oleracea GN=RPS6 PE=1 SV=2
Length = 168
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 62/86 (72%), Gaps = 6/86 (6%)
Query: 62 VKAQTLDFSGSFFEGGGFGSDDDPTSVPPGSVGTATAIEDKEEPQCPPGLRQYETMMVLR 121
VKA LDFSGSFFEGG G D+DP S PP + A+E+K EPQCPPGLRQYETM VLR
Sbjct: 17 VKAIALDFSGSFFEGGFGGLDEDPPSTPPAGL----AVEEKPEPQCPPGLRQYETMAVLR 72
Query: 122 PDMSEDERLALTQNC--LLLGVACMW 145
PDM+EDERL LTQ LL+ M+
Sbjct: 73 PDMTEDERLTLTQKYEELLVAGGAMY 98
>sp|A7HKU7|RS6_FERNB 30S ribosomal protein S6 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rpsF PE=3 SV=1
Length = 124
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQNC 136
+R YETM +++PD+SE+ER L +N
Sbjct: 1 MRIYETMFIIKPDVSEEERNKLVENV 26
>sp|Q91YJ3|THYN1_MOUSE Thymocyte nuclear protein 1 OS=Mus musculus GN=Thyn1 PE=1 SV=1
Length = 226
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 53 KNSNSVSLTVKAQTLDFSGSFFEGGGFGSD-----DDPTSVPPGSVGTATAIED-KEEPQ 106
+NS S S+ ++ +L+ + +F GG S+ +P S + +IED K +P+
Sbjct: 27 ENSESTSVKLENSSLEMTTTFKNGGKNLSNYWLMKSEPESRLEKGIDMKFSIEDLKAQPK 86
Query: 107 ---CPPGLRQYETMMVLRPDMSEDERLALTQNCLLLGVACMWRYSIEG 151
C G+R Y+ LR EDE NC G+ + + E
Sbjct: 87 QTACWDGVRNYQARNFLRAMKLEDEAFFYHSNCKQPGIVGLMKIVKEA 134
>sp|A6LKP9|RS6_THEM4 30S ribosomal protein S6 OS=Thermosipho melanesiensis (strain BI429
/ DSM 12029) GN=rpsF PE=3 SV=1
Length = 119
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQNCL 137
+R YETM +++PD++E+ER + Q +
Sbjct: 1 MRIYETMFIIKPDIAEEEREKIAQGVV 27
>sp|B0K5L9|RS6_THEPX 30S ribosomal protein S6 OS=Thermoanaerobacter sp. (strain X514)
GN=rpsF PE=3 SV=1
Length = 95
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQ 134
+R YETM +L PD+SE+ER L +
Sbjct: 1 MRSYETMYILSPDLSEEERKGLIE 24
>sp|B0K8G4|RS6_THEP3 30S ribosomal protein S6 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=rpsF PE=3 SV=1
Length = 95
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQ 134
+R YETM +L PD+SE+ER L +
Sbjct: 1 MRSYETMYILSPDLSEEERKGLIE 24
>sp|Q8R6M1|RS6_THETN 30S ribosomal protein S6 OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=rpsF PE=3 SV=1
Length = 95
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQ 134
+R YETM VL PD++E+ER L +
Sbjct: 1 MRSYETMYVLSPDLNEEERKGLIE 24
>sp|Q9M052|U76F1_ARATH UDP-glycosyltransferase 76F1 OS=Arabidopsis thaliana GN=UGT76F1
PE=2 SV=1
Length = 460
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 84 DPTSVPPGSVGTATAIEDKEEPQCPPGLRQYET--MMVLRP------DMSEDERLALTQN 135
DP SV S G+ AIE+KE + GLR E + V+RP + E L +N
Sbjct: 264 DPQSVVYASFGSLAAIEEKEFLEIAWGLRNSERPFLWVVRPGSVRGTEWLESLPLGFMEN 323
Query: 136 CLLLGVACMWRYSIEGLFH 154
G W +E L H
Sbjct: 324 IGDKGKIVKWANQLEVLAH 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,574,932
Number of Sequences: 539616
Number of extensions: 2665619
Number of successful extensions: 6061
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6048
Number of HSP's gapped (non-prelim): 21
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)