Query 029831
Match_columns 187
No_of_seqs 106 out of 166
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 04:21:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00123 rps6 ribosomal protei 99.0 1.6E-10 3.5E-15 85.2 1.7 38 110-147 4-43 (97)
2 COG0360 RpsF Ribosomal protein 98.7 5.2E-09 1.1E-13 80.8 1.7 36 112-147 1-38 (112)
3 PRK00453 rpsF 30S ribosomal pr 98.7 6.6E-09 1.4E-13 76.5 1.7 37 111-147 1-39 (108)
4 PF01250 Ribosomal_S6: Ribosom 98.5 4.4E-08 9.6E-13 69.5 1.2 68 112-184 1-72 (92)
5 TIGR00166 S6 ribosomal protein 98.5 5.4E-08 1.2E-12 70.1 1.3 35 112-147 1-37 (93)
6 PRK14074 rpsF 30S ribosomal pr 94.7 0.011 2.4E-07 52.3 0.7 38 111-148 1-40 (257)
7 PLN02289 ribulose-bisphosphate 54.8 11 0.00023 32.3 2.5 27 109-136 62-88 (176)
8 PRK11702 hypothetical protein; 46.1 16 0.00035 28.9 2.1 29 114-142 23-54 (108)
9 PRK10738 hypothetical protein; 43.4 38 0.00082 26.2 3.8 44 106-150 77-130 (134)
10 PRK02141 Maf-like protein; Rev 43.2 33 0.00071 28.9 3.6 39 113-151 129-176 (207)
11 PF13316 DUF4087: Protein of u 41.8 13 0.00029 29.2 1.0 24 137-163 30-53 (101)
12 PF11148 DUF2922: Protein of u 39.6 29 0.00062 24.0 2.3 31 121-151 23-57 (69)
13 PRK00884 Maf-like protein; Rev 37.0 52 0.0011 27.4 3.9 40 112-151 118-166 (194)
14 cd02958 UAS UAS family; UAS is 35.9 35 0.00076 24.3 2.4 37 117-153 53-98 (114)
15 PRK01839 Maf-like protein; Rev 34.3 67 0.0015 26.9 4.2 42 112-153 137-187 (209)
16 KOG4708 Mitochondrial ribosoma 33.7 7.1 0.00015 32.4 -1.7 41 111-154 3-46 (141)
17 COG5470 Uncharacterized conser 33.5 28 0.00061 27.3 1.7 25 128-154 24-51 (96)
18 PRK14363 Maf-like protein; Pro 33.3 76 0.0016 26.7 4.3 42 112-153 115-165 (204)
19 cd02440 AdoMet_MTases S-adenos 32.4 42 0.00091 20.6 2.1 40 112-155 65-107 (107)
20 PRK14361 Maf-like protein; Pro 32.0 87 0.0019 25.9 4.4 42 112-153 112-162 (187)
21 PRK14364 Maf-like protein; Pro 31.8 95 0.0021 25.4 4.6 43 111-153 110-161 (181)
22 cd07321 Extradiol_Dioxygenase_ 31.4 19 0.00041 26.0 0.4 14 123-136 34-47 (77)
23 PF13684 Dak1_2: Dihydroxyacet 31.2 1E+02 0.0022 27.1 4.9 24 113-136 3-30 (313)
24 TIGR03599 YloV DAK2 domain fus 30.4 94 0.002 29.7 4.9 28 109-136 220-249 (530)
25 cd00179 SynN Syntaxin N-termin 30.3 28 0.00061 25.8 1.2 18 118-135 124-141 (151)
26 COG1765 Predicted redox protei 30.0 83 0.0018 24.4 3.8 48 103-151 79-135 (137)
27 PRK00148 Maf-like protein; Rev 29.9 80 0.0017 26.2 3.8 42 112-153 117-167 (194)
28 PF13584 BatD: Oxygen toleranc 29.8 35 0.00076 30.4 1.9 121 56-178 248-385 (484)
29 PF03725 RNase_PH_C: 3' exorib 28.6 43 0.00094 22.1 1.7 26 118-145 15-41 (68)
30 PRK01441 Maf-like protein; Rev 27.3 1.1E+02 0.0023 25.7 4.2 41 113-153 128-177 (207)
31 PRK00234 Maf-like protein; Rev 27.3 1E+02 0.0022 25.4 4.0 38 113-151 119-166 (192)
32 COG0424 Maf Nucleotide-binding 26.7 1.2E+02 0.0025 25.9 4.4 44 111-154 118-170 (193)
33 PRK14367 Maf-like protein; Pro 26.3 87 0.0019 26.1 3.5 41 113-153 124-173 (202)
34 PRK14366 Maf-like protein; Pro 26.0 92 0.002 26.0 3.6 41 113-153 122-171 (195)
35 PF14936 p53-inducible11: Tumo 25.0 20 0.00044 30.8 -0.4 37 78-114 20-56 (179)
36 TIGR00172 maf MAF protein. Thi 24.8 1.1E+02 0.0025 25.0 3.9 42 112-153 117-167 (183)
37 PRK00032 Maf-like protein; Rev 24.6 1.1E+02 0.0023 25.4 3.7 43 111-153 116-167 (190)
38 PRK10148 hypothetical protein; 24.4 1.3E+02 0.0027 23.4 3.9 53 117-177 88-141 (147)
39 PF14258 DUF4350: Domain of un 24.4 84 0.0018 20.9 2.6 30 115-147 36-68 (70)
40 PF07462 MSP1_C: Merozoite sur 23.9 61 0.0013 32.1 2.5 25 97-122 356-380 (574)
41 PRK14362 Maf-like protein; Pro 23.7 1.1E+02 0.0023 25.9 3.5 43 112-154 128-179 (207)
42 PF04320 DUF469: Protein with 23.6 45 0.00098 26.0 1.3 40 114-153 17-62 (101)
43 PRK14365 Maf-like protein; Pro 23.5 1.4E+02 0.003 24.9 4.1 43 111-153 118-169 (197)
44 PRK04056 Maf-like protein; Rev 22.3 92 0.002 25.6 2.9 43 111-153 114-165 (180)
45 PF13864 Enkurin: Calmodulin-b 22.0 46 0.001 24.4 1.0 24 103-136 26-49 (98)
46 PRK00078 Maf-like protein; Rev 21.2 1.3E+02 0.0028 24.9 3.5 44 111-154 119-171 (192)
47 cd02951 SoxW SoxW family; SoxW 20.9 60 0.0013 23.1 1.4 17 137-153 90-106 (125)
48 PRK14368 Maf-like protein; Pro 20.8 1E+02 0.0022 25.7 2.8 43 111-153 120-171 (193)
49 PRK01526 Maf-like protein; Rev 20.6 99 0.0021 25.9 2.8 41 113-153 129-178 (205)
50 PF07045 DUF1330: Protein of u 20.1 1.1E+02 0.0024 20.6 2.5 27 127-155 9-38 (65)
No 1
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=98.98 E-value=1.6e-10 Score=85.24 Aligned_cols=38 Identities=37% Similarity=0.497 Sum_probs=36.0
Q ss_pred cccceeEEEEecCCCCHHHHHhhhccE--EEEeCCeEEEE
Q 029831 110 GLRQYETMMVLRPDMSEDERLALTQNC--LLLGVACMWRY 147 (187)
Q Consensus 110 GMRKYETMfILRPDLEEEAr~AlVEKF--IIe~nGGEIv~ 147 (187)
.||+||+|||++|+++||+++++++++ +|+++||+|+.
T Consensus 4 ~mr~YE~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~ 43 (97)
T CHL00123 4 KLNKYETMYLLKPDLNEEELLKWIENYKKLLRKRGAKNIS 43 (97)
T ss_pred cccceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 599999999999999999999999999 99999998865
No 2
>COG0360 RpsF Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=5.2e-09 Score=80.81 Aligned_cols=36 Identities=31% Similarity=0.521 Sum_probs=33.7
Q ss_pred cceeEEEEecCCCCHHHHHhhhccE--EEEeCCeEEEE
Q 029831 112 RQYETMMVLRPDMSEDERLALTQNC--LLLGVACMWRY 147 (187)
Q Consensus 112 RKYETMfILRPDLEEEAr~AlVEKF--IIe~nGGEIv~ 147 (187)
|+||+|||++||++||++++++||| +|+++||+|+.
T Consensus 1 ~~YEi~~iv~p~~see~~~~~ve~~~~~l~~~gg~i~~ 38 (112)
T COG0360 1 RKYEIVFIVRPDLSEEQVAALVEKYKGVLTNNGGEIHK 38 (112)
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 6899999999999999999999999 99999998864
No 3
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=98.69 E-value=6.6e-09 Score=76.55 Aligned_cols=37 Identities=30% Similarity=0.528 Sum_probs=34.8
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE--EEEeCCeEEEE
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC--LLLGVACMWRY 147 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF--IIe~nGGEIv~ 147 (187)
||+||+|||++|+++||+++++++++ +|.++||+|..
T Consensus 1 M~~YE~~~il~~~~~~~~~~~~~~~~~~~i~~~gg~i~~ 39 (108)
T PRK00453 1 MRKYEIVFILRPDLSEEQVKALVERFKGVITENGGTIHK 39 (108)
T ss_pred CCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 89999999999999999999999999 99999998754
No 4
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=98.48 E-value=4.4e-08 Score=69.49 Aligned_cols=68 Identities=26% Similarity=0.464 Sum_probs=44.8
Q ss_pred cceeEEEEecCCCCHHHHHhhhccE--EEEeCCeEEEEeee--ceeeccCCCCcccccCCCceEEEEEeecCCCCcC
Q 029831 112 RQYETMMVLRPDMSEDERLALTQNC--LLLGVACMWRYSIE--GLFHWPTASGRETKLGSPTLTWMVSISSSPTSLN 184 (187)
Q Consensus 112 RKYETMfILRPDLEEEAr~AlVEKF--IIe~nGGEIv~~ie--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (187)
|+||+|+|++|+++||+.+++++++ +|.++||+|. .+| |.=.-|..-.+- .--.-+++.+..+|..++
T Consensus 1 r~YE~~~il~~~~~~~~~~~~~~~~~~~i~~~gg~v~-~~~~~G~r~LaY~i~k~----~~G~Y~~~~f~~~~~~i~ 72 (92)
T PF01250_consen 1 RKYELMFILRPDLSEEEIKKLIERVKKIIEKNGGVVR-SVENWGKRRLAYPIKKQ----KEGHYFLFNFDASPSAIK 72 (92)
T ss_dssp EEEEEEEEE-TTSCHHHHHHHHHHHHHHHHHTTEEEE-EEEEEEEEEESSEETTE----CEEEEEEEEEEESTTHHH
T ss_pred CceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEE-EEEEEeecccccCCCCC----CEEEEEEEEEEeCHHHHH
Confidence 7999999999999999999999999 9999999664 343 222222111111 222345666677666543
No 5
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=98.46 E-value=5.4e-08 Score=70.07 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=32.0
Q ss_pred cceeEEEEecCCCCHHHHHhhhccE--EEEeCCeEEEE
Q 029831 112 RQYETMMVLRPDMSEDERLALTQNC--LLLGVACMWRY 147 (187)
Q Consensus 112 RKYETMfILRPDLEEEAr~AlVEKF--IIe~nGGEIv~ 147 (187)
|+||+|||++|+++|| ++++++++ +|.++||+|..
T Consensus 1 ~~YE~~~Il~p~~~~~-~~~~~~~~~~~i~~~gg~i~~ 37 (93)
T TIGR00166 1 RHYEIIFLVRPTLSEE-VKGQIERYKKVITLNGAEIVR 37 (93)
T ss_pred CceeEEEEECCCCcHH-HHHHHHHHHHHHHhCCCEEEE
Confidence 6899999999999999 99999999 89999997754
No 6
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=94.69 E-value=0.011 Score=52.29 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=35.5
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE--EEEeCCeEEEEe
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC--LLLGVACMWRYS 148 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF--IIe~nGGEIv~~ 148 (187)
|..||-+||.|+||..-+..+++|.| +|.++||.++..
T Consensus 1 m~lYE~~fIa~q~ls~~q~e~l~e~~~~~l~~~~~~v~~~ 40 (257)
T PRK14074 1 MNLYEFTFIAQQGLLQQEVEEMVQELAVLLKNIKADVMFQ 40 (257)
T ss_pred CCccceeeeecccccHHHHHHHHHHHHHHHHhcCCeeehh
Confidence 78999999999999999999999999 999999988753
No 7
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=54.83 E-value=11 Score=32.33 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=22.7
Q ss_pred ccccceeEEEEecCCCCHHHHHhhhccE
Q 029831 109 PGLRQYETMMVLRPDMSEDERLALTQNC 136 (187)
Q Consensus 109 ~GMRKYETMfILRPDLEEEAr~AlVEKF 136 (187)
-|.|||||.--|.| |+||+...-||=.
T Consensus 62 ~~~kkfETfSYLPp-LtdeqI~kQVeYl 88 (176)
T PLN02289 62 IGKKKFETLSYLPD-LTDEELAKEVDYL 88 (176)
T ss_pred cCccceeeeecCCC-CCHHHHHHHHHHH
Confidence 38999999988866 9999998887754
No 8
>PRK11702 hypothetical protein; Provisional
Probab=46.06 E-value=16 Score=28.89 Aligned_cols=29 Identities=10% Similarity=0.042 Sum_probs=24.2
Q ss_pred eeEEEEecCCCCHHHHHhhhccE---EEEeCC
Q 029831 114 YETMMVLRPDMSEDERLALTQNC---LLLGVA 142 (187)
Q Consensus 114 YETMfILRPDLEEEAr~AlVEKF---IIe~nG 142 (187)
+|+-.=+..++++|+.++.++.| +|+.+|
T Consensus 23 F~v~~~~~~~~~~e~~D~~vD~fIde~Ie~ng 54 (108)
T PRK11702 23 FSVNWRFPEGTSEEQIDATVDAFIDEVIEPNG 54 (108)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 56677778889999999999999 677765
No 9
>PRK10738 hypothetical protein; Provisional
Probab=43.44 E-value=38 Score=26.22 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=32.9
Q ss_pred CCCccccceeEEEEecC-CCCHHHHHhhhcc----E-----EEEeCCeEEEEeee
Q 029831 106 QCPPGLRQYETMMVLRP-DMSEDERLALTQN----C-----LLLGVACMWRYSIE 150 (187)
Q Consensus 106 ~~P~GMRKYETMfILRP-DLEEEAr~AlVEK----F-----IIe~nGGEIv~~ie 150 (187)
.-|.+..+..+-|.++. +++||++..+++. + .|. .+.+|.+.+|
T Consensus 77 ~~p~~f~~I~~~~~~~g~~l~~e~~~rav~ls~~kyC~V~~~l~-~~~~I~~~~~ 130 (134)
T PRK10738 77 EAPRLFTHINLHFIVTGKDLKDAAVARAVDLSAEKYCSVALMLE-KAVNITHSYE 130 (134)
T ss_pred cCCCcccEEEEEEEEECCCCCHHHHHHHHHHHHccCCcHHHHhC-CCceEEEEEE
Confidence 55666778889999998 6999999887774 3 553 3677777765
No 10
>PRK02141 Maf-like protein; Reviewed
Probab=43.21 E-value=33 Score=28.86 Aligned_cols=39 Identities=13% Similarity=-0.016 Sum_probs=31.2
Q ss_pred ceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeec
Q 029831 113 QYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEG 151 (187)
Q Consensus 113 KYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg 151 (187)
.+|+.-|---+|+||+.++-|+.- -|+..|+..+..|||
T Consensus 129 ~~~~t~V~F~~ls~~~I~~Yv~~~ep~dkAGaY~IQg~g~~li~~I~G 176 (207)
T PRK02141 129 EDVVTRVRFRTLTDAELDAYLRAETPYDVAGSAKSEGLGIALLDAIDS 176 (207)
T ss_pred EEEEEEEEECCCCHHHHHHHHccCCCCceeeeeeccCChhheEEEEEE
Confidence 355555554569999999988765 888999999999999
No 11
>PF13316 DUF4087: Protein of unknown function (DUF4087)
Probab=41.81 E-value=13 Score=29.16 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=20.1
Q ss_pred EEEeCCeEEEEeeeceeeccCCCCccc
Q 029831 137 LLLGVACMWRYSIEGLFHWPTASGRET 163 (187)
Q Consensus 137 IIe~nGGEIv~~ieg~~~~~~~~~~~~ 163 (187)
+|..+||. -+||.|+||++...|-
T Consensus 30 ~I~~qGg~---~~~g~~~~p~~~~~e~ 53 (101)
T PF13316_consen 30 TISVQGGY---QAEGMDNIPDFDESEW 53 (101)
T ss_pred EEecCCcc---cCCCccccCCCCccce
Confidence 88888886 8899999999887653
No 12
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=39.57 E-value=29 Score=24.02 Aligned_cols=31 Identities=16% Similarity=0.030 Sum_probs=24.7
Q ss_pred cCCCCHHHHHhhhccE----EEEeCCeEEEEeeec
Q 029831 121 RPDMSEDERLALTQNC----LLLGVACMWRYSIEG 151 (187)
Q Consensus 121 RPDLEEEAr~AlVEKF----IIe~nGGEIv~~ieg 151 (187)
+++|++++.+++++.+ ++...||.++...+.
T Consensus 23 k~~lt~~~V~~~m~~ii~~~vf~~~~~~l~~~~~A 57 (69)
T PF11148_consen 23 KEDLTEAEVKAAMQAIIAKKVFAKDGGKLVKFKSA 57 (69)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeeCCCcceeeeeEE
Confidence 5689999999999999 777777877655544
No 13
>PRK00884 Maf-like protein; Reviewed
Probab=37.00 E-value=52 Score=27.37 Aligned_cols=40 Identities=20% Similarity=0.095 Sum_probs=31.8
Q ss_pred cceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeec
Q 029831 112 RQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEG 151 (187)
Q Consensus 112 RKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg 151 (187)
..+|+.-|---+++|++.++-|+.- -|+..|+..+..|||
T Consensus 118 ~~~~~t~V~f~~ls~~~I~~Yv~~~ep~dkAGay~IQg~g~~li~~I~G 166 (194)
T PRK00884 118 TEVEPFDVHFRHLSEAEIDRYVRKEHPLHCAGSFKSEGLGITLFERLEG 166 (194)
T ss_pred EEEEEEEEEECCCCHHHHHHHHhhCCCcceeeeEeecCChhheEEEeEE
Confidence 3466555554569999999888764 888899999999999
No 14
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=35.93 E-value=35 Score=24.33 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=23.3
Q ss_pred EEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 117 MMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 117 MfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
.+.++-|+++.+-.++.+++ +|....|+++..++|++
T Consensus 53 ~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~ 98 (114)
T cd02958 53 FIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNI 98 (114)
T ss_pred EEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCC
Confidence 34445566553444555544 45443789999999985
No 15
>PRK01839 Maf-like protein; Reviewed
Probab=34.32 E-value=67 Score=26.94 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=33.9
Q ss_pred cceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 112 RQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 112 RKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
..||+.-|---+++||+.++-|+.- -|+..|+..+..|||-+
T Consensus 137 ~~~~~T~V~F~~l~~~~I~~Yi~~~e~~dkAGgy~Iqg~g~~~i~~I~G~y 187 (209)
T PRK01839 137 PALSRSRVRFAPATRDAIARYVASGEPFGKAGAYAIQGRAAEFVERIDGSY 187 (209)
T ss_pred EEEEEEEEEECCCCHHHHHHHHhcCCChhhccEEEEccChhheEEeeECCc
Confidence 3567666666679999999999875 78888899999999964
No 16
>KOG4708 consensus Mitochondrial ribosomal protein MRP17 [Translation, ribosomal structure and biogenesis]
Probab=33.69 E-value=7.1 Score=32.35 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=30.8
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE---EEEeCCeEEEEeeeceee
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC---LLLGVACMWRYSIEGLFH 154 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF---IIe~nGGEIv~~ieg~~~ 154 (187)
|=-||++.|+|+..-.| ..+++.|- +|.+| | ||.-||-+=|
T Consensus 3 mp~yelali~~~~~rpe-la~~l~rt~~~lid~n-g-VvrdveslG~ 46 (141)
T KOG4708|consen 3 MPLYELALITRSLSRPE-LAKLLARTGGHLIDRN-G-VVRDVESLGK 46 (141)
T ss_pred chHHHHHHHhcccCCHH-HHHHHHHHhhHHhhcC-C-eEeechhcch
Confidence 56799999999988887 45555555 77776 4 8889996544
No 17
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=33.53 E-value=28 Score=27.28 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=18.1
Q ss_pred HHHhhhccE---EEEeCCeEEEEeeeceee
Q 029831 128 ERLALTQNC---LLLGVACMWRYSIEGLFH 154 (187)
Q Consensus 128 Ar~AlVEKF---IIe~nGGEIv~~ieg~~~ 154 (187)
...++++|| .|.+ || -|..+||-|+
T Consensus 24 ~~~~a~~~~Ggr~LvR-GG-~v~~lEG~w~ 51 (96)
T COG5470 24 KAKPAIEKFGGRYLVR-GG-EVETLEGEWR 51 (96)
T ss_pred HhHHHHHHhCCeeEee-CC-CeeeccCCCC
Confidence 456778888 7777 34 5788999954
No 18
>PRK14363 Maf-like protein; Provisional
Probab=33.29 E-value=76 Score=26.72 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=33.5
Q ss_pred cceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 112 RQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 112 RKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
..+|+.-|---+++||+.++-|+.- .|+..|+..+..|||-+
T Consensus 115 ~~~~~T~V~F~~ls~~~I~~Yv~~~ep~dkAG~y~Iqg~g~~~i~~I~G~~ 165 (204)
T PRK14363 115 VIVSSTKVRFRELPESVIDYYVEKYRPLDKAGAYGIQDFAAVFVEKIEGDF 165 (204)
T ss_pred EEEEEEEEEECCCCHHHHHHHHhcCCChhhcceEEEccCccceEEeeECCC
Confidence 3455555555569999999998875 88999999999999966
No 19
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=32.41 E-value=42 Score=20.56 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=28.3
Q ss_pred cceeEEEEecCCCC-HHHHHhhhccE--EEEeCCeEEEEeeeceeec
Q 029831 112 RQYETMMVLRPDMS-EDERLALTQNC--LLLGVACMWRYSIEGLFHW 155 (187)
Q Consensus 112 RKYETMfILRPDLE-EEAr~AlVEKF--IIe~nGGEIv~~ieg~~~~ 155 (187)
.+|.++++..+--. .+...++++++ .+ +.||.++.. +|+|
T Consensus 65 ~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l-~~~g~~~~~---~~~~ 107 (107)
T cd02440 65 ESFDVIISDPPLHHLVEDLARFLEEARRLL-KPGGVLVLT---LVLA 107 (107)
T ss_pred CceEEEEEccceeehhhHHHHHHHHHHHHc-CCCCEEEEE---EEeC
Confidence 57888888777555 77888888888 55 456766655 6655
No 20
>PRK14361 Maf-like protein; Provisional
Probab=32.02 E-value=87 Score=25.87 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=34.0
Q ss_pred cceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 112 RQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 112 RKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
..+|+.-|---+++||+.++-++.- -|+..|+..+..|||-+
T Consensus 112 ~~~~~t~V~f~~ls~~~I~~Yv~~~e~~dkAG~y~Iqg~g~~~i~~I~G~y 162 (187)
T PRK14361 112 VGVERTDVTFRALTAAEISFYARSGEGLDKAGGYGIQGVGMALVSRVEGDY 162 (187)
T ss_pred EEEEEEEEEECCCCHHHHHHHHhCCCCccceeEEEeccCccceEEEeECCC
Confidence 4567666666679999999887755 88899999999999965
No 21
>PRK14364 Maf-like protein; Provisional
Probab=31.82 E-value=95 Score=25.44 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=34.0
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
...+|+.-|---+++|++.++-|+.- -|+..|+..+..|||-+
T Consensus 110 ~~~~~~t~V~f~~ls~~~I~~Yv~~~e~~dkAG~y~Iqg~g~~li~~I~Gdy 161 (181)
T PRK14364 110 LSQVVQTQVEFASLTTQDMEDYWATGEPVGKAGAYAIQGIASQYIPKIQGSY 161 (181)
T ss_pred EEEEEEEEEEECCCCHHHHHHHHhcCCCcCcccCEEeecCceeeEEEeEcCC
Confidence 34566666655669999999988775 88889999999999965
No 22
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=31.35 E-value=19 Score=26.00 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=12.7
Q ss_pred CCCHHHHHhhhccE
Q 029831 123 DMSEDERLALTQNC 136 (187)
Q Consensus 123 DLEEEAr~AlVEKF 136 (187)
.|+||+|+|+.++=
T Consensus 34 ~Lt~eE~~al~~rD 47 (77)
T cd07321 34 GLTPEEKAALLARD 47 (77)
T ss_pred CCCHHHHHHHHcCC
Confidence 79999999999875
No 23
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=31.22 E-value=1e+02 Score=27.10 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=19.6
Q ss_pred ceeEEEEecCC----CCHHHHHhhhccE
Q 029831 113 QYETMMVLRPD----MSEDERLALTQNC 136 (187)
Q Consensus 113 KYETMfILRPD----LEEEAr~AlVEKF 136 (187)
.|||||||+-+ .+.++..+.++.+
T Consensus 3 ~Yctefii~~~~~~~~~~~~lr~~L~~~ 30 (313)
T PF13684_consen 3 GYCTEFIIELDNDSPFDAEELRARLEEL 30 (313)
T ss_pred ceeEEEEEECCCCCcCCHHHHHHHHHhc
Confidence 59999999943 3788888888888
No 24
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=30.43 E-value=94 Score=29.66 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=21.9
Q ss_pred ccccceeEEEEec--CCCCHHHHHhhhccE
Q 029831 109 PGLRQYETMMVLR--PDMSEDERLALTQNC 136 (187)
Q Consensus 109 ~GMRKYETMfILR--PDLEEEAr~AlVEKF 136 (187)
+.=..|+|||+|+ .+.+.++....++.+
T Consensus 220 ~~~~~yctef~i~~~~~~~~~~lr~~L~~~ 249 (530)
T TIGR03599 220 DIEFGYCTEFLVKLKDKFDEEKFRKELEKL 249 (530)
T ss_pred CCCcceEEEEEEEcCCccCHHHHHHHHHhc
Confidence 3344599999998 457788888888888
No 25
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=30.28 E-value=28 Score=25.83 Aligned_cols=18 Identities=6% Similarity=0.160 Sum_probs=16.0
Q ss_pred EEecCCCCHHHHHhhhcc
Q 029831 118 MVLRPDMSEDERLALTQN 135 (187)
Q Consensus 118 fILRPDLEEEAr~AlVEK 135 (187)
.|++|+++||+..++++.
T Consensus 124 ~i~~~~~tdeei~~~~~~ 141 (151)
T cd00179 124 EITGGEATDEELEDMLES 141 (151)
T ss_pred HHcCCCCChHHHHHHHHc
Confidence 369999999999999985
No 26
>COG1765 Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=30.01 E-value=83 Score=24.37 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=33.0
Q ss_pred CCCCCCccccceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeec
Q 029831 103 EEPQCPPGLRQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEG 151 (187)
Q Consensus 103 ~~~~~P~GMRKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg 151 (187)
...+-|-+.-++.+-|++.-|++||++++++++. .+.. +-.|.+..|.
T Consensus 79 ~~~~~~~~~~~i~i~~~v~gd~~~e~~~~~i~~a~ek~C~v~~~L~~-~~~i~~~~e~ 135 (137)
T COG1765 79 RREEEPRGFTEINIHFVVKGDLDEEKLKRAVELAEEKYCPVSRTLTK-GVKITISVEV 135 (137)
T ss_pred EccCCCceEEEEEEEEEEecCCCHHHHHHHHHHHhcccCcHhhhhcC-CceEEEEEEe
Confidence 3344444444455899999999999999988765 4444 3567777664
No 27
>PRK00148 Maf-like protein; Reviewed
Probab=29.91 E-value=80 Score=26.16 Aligned_cols=42 Identities=26% Similarity=0.231 Sum_probs=32.9
Q ss_pred cceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 112 RQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 112 RKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
..||..-|---+++||+.++-++.- -|+..|+..+..|||-+
T Consensus 117 ~~~~~T~V~F~~l~~~~I~~Yl~~~e~~dkAGay~Iqg~g~~~i~~I~G~~ 167 (194)
T PRK00148 117 TFYERTEVHFAELSDEEIEAYVATGEPLDCAGAFTLQGLGGWFVDKIEGDP 167 (194)
T ss_pred EEEEEEEEEECCCCHHHHHHHHhhCCccceeeEEEeccChhhcEEeeECCc
Confidence 4566655555569999999988764 88888889999999954
No 28
>PF13584 BatD: Oxygen tolerance
Probab=29.83 E-value=35 Score=30.36 Aligned_cols=121 Identities=20% Similarity=0.199 Sum_probs=75.0
Q ss_pred CceeeeEeeeeeecccceeccCCCCC-----CCCCCCCCCC----------CCcccccccccCCCCCCccccceeEEEEe
Q 029831 56 NSVSLTVKAQTLDFSGSFFEGGGFGS-----DDDPTSVPPG----------SVGTATAIEDKEEPQCPPGLRQYETMMVL 120 (187)
Q Consensus 56 ~~~~~~vk~~~ldf~gsffeg~g~gs-----~~d~~s~~p~----------g~g~~~~~~~~~~~~~P~GMRKYETMfIL 120 (187)
..+.+.||++--+..+..|-| ..|. .-|+.....| |.|.. +.-+-+...+|+|.|-|+---..
T Consensus 248 ~~~~i~V~plP~~~~p~~f~~-aVg~f~l~~~~~~~~~~~Ge~vt~ti~i~g~Gn~-~~~~lP~l~~~~~~~vy~~~~~~ 325 (484)
T PF13584_consen 248 EPLTITVKPLPAEGAPADFSG-AVGNFSLSQSWDPTEVKVGEPVTRTITISGEGNL-PSIQLPPLNLPKGFRVYPPKPQE 325 (484)
T ss_pred CCeEEEeccCCcccCCCCccc-ceeEEEEEEEcCcccccCCCeEEEEEEEEEEcch-hcccCCCCCCCcccEEcCCCccc
Confidence 445667777666666666655 3332 1234333322 33442 22244556688899988754444
Q ss_pred cCCCCHHH-HHhhhccE-EEEeCCeEEEEeeeceeeccCCCCcccccCCCceEEEEEeec
Q 029831 121 RPDMSEDE-RLALTQNC-LLLGVACMWRYSIEGLFHWPTASGRETKLGSPTLTWMVSISS 178 (187)
Q Consensus 121 RPDLEEEA-r~AlVEKF-IIe~nGGEIv~~ieg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (187)
+-+.+++. ......++ +|-+..|++..|-.-+=.|-+..++...+-+|.++--|.-+.
T Consensus 326 ~~~~~~~g~~g~~~~~~~~ip~~~G~~~lP~i~~~~fdp~~~~y~~~~~~~~~i~V~~~~ 385 (484)
T PF13584_consen 326 QDKPSGGGLTGSRTFKYTLIPKKPGDFTLPAIRFSWFDPQTGKYETATLPPITITVAPSA 385 (484)
T ss_pred cccccCCcceEEEEEEEEEEeCCCCeEEcCCeEEEEEcCCCCeEEEEEcCCEEEEEecCC
Confidence 43333222 12234555 888889999998888888999999999999988887775443
No 29
>PF03725 RNase_PH_C: 3' exoribonuclease family, domain 2 This Prosite family only includes Ribonuclease PH; InterPro: IPR015847 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) [], as well as in archaeal and eukaryotic RNA exosomes [, ], the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. This entry represents the phosphorolytic (PH) domain 2, which has a core 3-layer alpha/beta/alpha structure. This domain is found in bacterial/organelle PNPases and in archaeal/eukaryotic exosomes []. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 1E3H_A 1E3P_A 2NN6_E 2WNR_A 3U1K_B 2BA0_H 2BA1_H 3M85_G 3M7N_H 3H1C_K ....
Probab=28.60 E-value=43 Score=22.08 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=14.9
Q ss_pred EEecCCCCHHHHHhhhccE-EEEeCCeEE
Q 029831 118 MVLRPDMSEDERLALTQNC-LLLGVACMW 145 (187)
Q Consensus 118 fILRPDLEEEAr~AlVEKF-IIe~nGGEI 145 (187)
+|++|+.+||+.... .+ +.....|++
T Consensus 15 ~v~Dpt~~Ee~~~~~--~l~~~~~~~~~~ 41 (68)
T PF03725_consen 15 LVVDPTAEEESLSDS--SLTLAVDGTGNI 41 (68)
T ss_dssp EEES--HHHHHHSSE--EEEEEEETTSSE
T ss_pred EEECCCHHHHhhcCC--cEEEEEECCCCE
Confidence 899999999986544 34 333334444
No 30
>PRK01441 Maf-like protein; Reviewed
Probab=27.34 E-value=1.1e+02 Score=25.65 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=32.9
Q ss_pred ceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 113 QYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 113 KYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
.+|+.-|---+++||+.++-|+.- -|+..|+..+..|||-+
T Consensus 128 ~~~~T~V~F~~ls~~~I~~Yv~~~e~~dkAGgy~Iqg~g~~~i~~I~G~y 177 (207)
T PRK01441 128 KLVETRVRFKRLSREDIEAYLASGEWRGKAGGYAIQGIAGSFVVKLVGSY 177 (207)
T ss_pred EEEEEEEEECCCCHHHHHHHHhcCCCccccccEEeccChhheEEEEECCc
Confidence 466666655679999999988875 78888889999999964
No 31
>PRK00234 Maf-like protein; Reviewed
Probab=27.26 E-value=1e+02 Score=25.45 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=29.5
Q ss_pred cee-EEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeec
Q 029831 113 QYE-TMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEG 151 (187)
Q Consensus 113 KYE-TMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg 151 (187)
.++ +.+-.+ +++||+.++-++.- -|+..|+..+..|||
T Consensus 119 ~~~~t~v~f~-~l~~~~I~~Yl~~ge~~dkAG~y~Iqg~g~~li~~i~G 166 (192)
T PRK00234 119 DCVPFTVHMR-ELDRARIERYLEAEQPLDCAGSFKAEGLGVSLFRSTEG 166 (192)
T ss_pred EEEEEEEEEC-CCCHHHHHHHHhcCCcccceeEEeeccChhhEEEEEEE
Confidence 343 444455 49999999988774 888888899999999
No 32
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=26.73 E-value=1.2e+02 Score=25.88 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=33.3
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeeceee
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLFH 154 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~~ 154 (187)
++..|+.=|---+|+|++.++=++.- -|+..||..++.|||-++
T Consensus 118 ~~~~~~t~V~F~~ls~~~I~~Yv~sgepl~kAGay~iqG~G~~fie~IeGdy~ 170 (193)
T COG0424 118 QSEVEVTKVRFRTLSDEEIEAYVASGEPLDKAGAYGIQGLGGLFIEKIEGDYS 170 (193)
T ss_pred EEEEEEEEEEEccCCHHHHHHHHHcCCcccccceEEeecccceEEEEeecCcc
Confidence 34566544444459999999887765 889999999999999653
No 33
>PRK14367 Maf-like protein; Provisional
Probab=26.35 E-value=87 Score=26.14 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=31.9
Q ss_pred ceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 113 QYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 113 KYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
.+|+.-|---+++||+.++-|+.- -|+..|+..+..|||-+
T Consensus 124 ~~~~T~V~f~~ls~~~I~~Yv~~~e~~dkAGay~Iqg~g~~~v~~I~G~y 173 (202)
T PRK14367 124 RVQTNRVVFKPLSSEEISAYVQSGEPMDKAGAYAVQGIGGIFIQSIEGSF 173 (202)
T ss_pred EEEEEEEEECCCCHHHHHHHHhcCCccceeeeEeecCChhhcEeeeECCC
Confidence 455555555569999999988765 78888889999999964
No 34
>PRK14366 Maf-like protein; Provisional
Probab=25.97 E-value=92 Score=26.01 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=32.5
Q ss_pred ceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 113 QYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 113 KYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
.+|+..|---+++||+.++-|+.- -|+..|+..+..|||-+
T Consensus 122 ~~~~T~V~F~~ls~~~I~~Yv~~~ep~dkAGay~Iqg~g~~li~~I~Gdy 171 (195)
T PRK14366 122 RSVVTVVKFKRLSKQEIKYYIASGEWKGKAGGCNIQGLAGKFVLSINGSY 171 (195)
T ss_pred EEEEEEEEECCCCHHHHHHHHhcCCccceeeeEeecCChhhcEeeeECCC
Confidence 466655655679999999888765 78888889999999965
No 35
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=24.96 E-value=20 Score=30.76 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCCCCCcccccccccCCCCCCccccce
Q 029831 78 GFGSDDDPTSVPPGSVGTATAIEDKEEPQCPPGLRQY 114 (187)
Q Consensus 78 g~gs~~d~~s~~p~g~g~~~~~~~~~~~~~P~GMRKY 114 (187)
|.|.+||.......-.--+...|+|-..+.|.|+|-+
T Consensus 20 GVGge~ddG~v~rSKISQlLGne~k~~vr~P~GLr~W 56 (179)
T PF14936_consen 20 GVGGEDDDGEVHRSKISQLLGNEIKFAVREPRGLRLW 56 (179)
T ss_pred cccccCCCCcCcHHHHHHHhcccceeeecCCCchhHH
Confidence 6777777766653222223456788889999998854
No 36
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=24.84 E-value=1.1e+02 Score=25.01 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=32.4
Q ss_pred cceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 112 RQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 112 RKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
..+|+.-|---+++||+.++-|+.- .|+..|+..+..|||-+
T Consensus 117 ~~~~~t~v~f~~l~~~~I~~Yl~~~e~~dkAGay~Iqg~g~~li~~I~Gd~ 167 (183)
T TIGR00172 117 TFLDVTKVHFRALDPEEIEKYVESGEPLEKAGAFGIEGFGAPLIKKIDGDY 167 (183)
T ss_pred EEEEEEEEEECCCCHHHHHHHHhcCCCcceeeEEEeccChhheEeeeECCc
Confidence 3456655555669999999888764 78888888999999955
No 37
>PRK00032 Maf-like protein; Reviewed
Probab=24.63 E-value=1.1e+02 Score=25.42 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=34.1
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
...+|+.-|---+++||+.++-|+.- -|+..|+..+..|||-+
T Consensus 116 ~~~~~~t~V~F~~l~~~~I~~Yv~~~ep~dkAG~y~Iqg~g~~li~~I~G~~ 167 (190)
T PRK00032 116 LSCLVVTDVTFRTLSDEEIARYWASGEPLDKAGAYGIQGLGGCFVRKINGSY 167 (190)
T ss_pred EEEEEEEEEEECcCCHHHHHHHHhcCCccceeeeEEeccChhhcEeeeECCC
Confidence 45566666665679999999988764 88888999999999964
No 38
>PRK10148 hypothetical protein; Provisional
Probab=24.44 E-value=1.3e+02 Score=23.36 Aligned_cols=53 Identities=21% Similarity=0.456 Sum_probs=30.0
Q ss_pred EEEecCCCCHHHHHhhhccEEEEeCCeEEEEeeeceeeccCCCCc-ccccCCCceEEEEEee
Q 029831 117 MMVLRPDMSEDERLALTQNCLLLGVACMWRYSIEGLFHWPTASGR-ETKLGSPTLTWMVSIS 177 (187)
Q Consensus 117 MfILRPDLEEEAr~AlVEKFIIe~nGGEIv~~ieg~~~~~~~~~~-~~~~~~~~~~~~~~~~ 177 (187)
.+.|..+ ++|+.+.+.+++ ..||+|+.|++-.+ |=..-|. .-|.| ++||++.-
T Consensus 88 ~l~l~~~-d~ee~~~~~~aL---a~gg~v~mpl~~~~-wg~~~g~v~D~fG---i~W~l~~~ 141 (147)
T PRK10148 88 TLVLDTQ-DVEEGKRWFDNL---AANGKIEMAWQETF-WAHGFGKVTDKFG---VPWMINVV 141 (147)
T ss_pred EEEEECC-CHHHHHHHHHHh---hCCCEEEecchhcc-hhhccEEEECCCC---CEEEEEec
Confidence 4455554 344444444443 36899999999864 4322222 23444 68998753
No 39
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=24.41 E-value=84 Score=20.89 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=18.2
Q ss_pred eEEEEecCC--CCH-HHHHhhhccEEEEeCCeEEEE
Q 029831 115 ETMMVLRPD--MSE-DERLALTQNCLLLGVACMWRY 147 (187)
Q Consensus 115 ETMfILRPD--LEE-EAr~AlVEKFIIe~nGGEIv~ 147 (187)
-+++|+.|+ +++ ++.+++.+-+ +.||.+|.
T Consensus 36 ~tll~i~~~~~~~~~~~~~~l~~~v---~~G~~lvl 68 (70)
T PF14258_consen 36 GTLLVIGPDLRLSEPEEAEALLEWV---EAGNTLVL 68 (70)
T ss_pred CEEEEEeCCCCCCchHHHHHHHHHH---HcCCEEEE
Confidence 388899987 454 5555554432 34676664
No 40
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=23.88 E-value=61 Score=32.12 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=20.0
Q ss_pred ccccccCCCCCCccccceeEEEEecC
Q 029831 97 TAIEDKEEPQCPPGLRQYETMMVLRP 122 (187)
Q Consensus 97 ~~~~~~~~~~~P~GMRKYETMfILRP 122 (187)
+|..+.++.-+|+|.+.||++| ++|
T Consensus 356 eae~~~~e~Iv~~~~nEyevvY-iKp 380 (574)
T PF07462_consen 356 EAENAQPENIVPEGINEYEVVY-IKP 380 (574)
T ss_pred cccccchhhhhcCcCCccceEE-ecc
Confidence 4555567788999999999999 555
No 41
>PRK14362 Maf-like protein; Provisional
Probab=23.69 E-value=1.1e+02 Score=25.88 Aligned_cols=43 Identities=21% Similarity=0.101 Sum_probs=33.8
Q ss_pred cceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeeceee
Q 029831 112 RQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLFH 154 (187)
Q Consensus 112 RKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~~ 154 (187)
..+|+.-|---+|+||+.++-|+.- -|+..|+..+..|||-+.
T Consensus 128 ~~~~~T~V~F~~ls~~~I~~Yv~~~ep~dkAG~Y~IQg~g~~li~~I~G~y~ 179 (207)
T PRK14362 128 VFHAITRVTMWDWPEAALAAYVATGEPSDKAGAYGIQGIGAFLVRSIEGSWS 179 (207)
T ss_pred EEEEEEEEEECCCCHHHHHHHHhcCCccceeeeEeecCChhhcEeeeECCCC
Confidence 4466666666679999999888765 888889999999999653
No 42
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=23.58 E-value=45 Score=25.99 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=27.4
Q ss_pred eeEEEEecCCCCHHHHHhhhccE--EEEeCCeE----EEEeeecee
Q 029831 114 YETMMVLRPDMSEDERLALTQNC--LLLGVACM----WRYSIEGLF 153 (187)
Q Consensus 114 YETMfILRPDLEEEAr~AlVEKF--IIe~nGGE----Iv~~ieg~~ 153 (187)
+|+-.=++..+++|+.++.++.| .|+.+|=. -...+||+-
T Consensus 17 F~v~~~~~~~~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~v 62 (101)
T PF04320_consen 17 FEVSCRFAEGTSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGFV 62 (101)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEEE
Confidence 56667778889999999999999 55554311 144555543
No 43
>PRK14365 Maf-like protein; Provisional
Probab=23.48 E-value=1.4e+02 Score=24.91 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=33.3
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
...||+.-|---+++|++.++-|+.- -|+..|+..+..|||-+
T Consensus 118 ~~~~~~T~V~f~~l~~~~I~~Yv~~~e~~dkAG~y~iq~~g~~li~~I~G~~ 169 (197)
T PRK14365 118 ISEIESTDVWMTELSREQILAYVRTGEPLDKAGAFAIQGKGAVLVEKIEGDF 169 (197)
T ss_pred EEEEEEEEEEECCCCHHHHHHHHhcCCccceeeeEEeccCccceEEeeEcCC
Confidence 34566666655579999999998864 88888889999999944
No 44
>PRK04056 Maf-like protein; Reviewed
Probab=22.27 E-value=92 Score=25.58 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=34.1
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
...+|+.-|---++++|+.++-|+.- -|+..|+..+..|||-+
T Consensus 114 ~~~~~~t~V~f~~ls~~~I~~Yv~~~e~~dkAG~y~Iqg~g~~li~~I~G~y 165 (180)
T PRK04056 114 WLDLSVTTYRFKKFDEDDLEKYLESGLWQGKAGACMVEGFHKKYIKSVSGNE 165 (180)
T ss_pred EEEEEEEEEEECCCCHHHHHHHHhcCCccceeeeehhcCChhhcEEeeECCC
Confidence 45677777776779999999888775 67788888899999854
No 45
>PF13864 Enkurin: Calmodulin-binding
Probab=21.95 E-value=46 Score=24.37 Aligned_cols=24 Identities=46% Similarity=0.948 Sum_probs=19.1
Q ss_pred CCCCCCccccceeEEEEecCCCCHHHHHhhhccE
Q 029831 103 EEPQCPPGLRQYETMMVLRPDMSEDERLALTQNC 136 (187)
Q Consensus 103 ~~~~~P~GMRKYETMfILRPDLEEEAr~AlVEKF 136 (187)
+++.||+|||. |+||+|.++++..
T Consensus 26 ~~~~~~~~~~~----------l~eeER~~lL~~L 49 (98)
T PF13864_consen 26 EDQECPPGMRL----------LSEEERQELLEGL 49 (98)
T ss_pred HhHhCcccccc----------CCHHHHHHHHHHH
Confidence 34459999885 8999999998764
No 46
>PRK00078 Maf-like protein; Reviewed
Probab=21.21 E-value=1.3e+02 Score=24.88 Aligned_cols=44 Identities=9% Similarity=0.163 Sum_probs=32.7
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeeceee
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLFH 154 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~~ 154 (187)
...+|+.-|---+++||+.++-|+.- -|+..|+..+..|||-++
T Consensus 119 ~~~~~~t~V~f~~ls~~~I~~Yi~~~ep~dkAG~y~Iqg~g~~li~~I~G~y~ 171 (192)
T PRK00078 119 IKDFVCTEVKFSKLTDRQIRKYINTGEPMDKAGAYGIQGKGGVFVEEINGCYY 171 (192)
T ss_pred EEEEEEEEEEECCCCHHHHHHHHcCCCcccEeeEEEEcCChhhcEeecCCCCC
Confidence 34566555555569999999888765 788888888999998653
No 47
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=20.86 E-value=60 Score=23.15 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=12.6
Q ss_pred EEEeCCeEEEEeeecee
Q 029831 137 LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 137 IIe~nGGEIv~~ieg~~ 153 (187)
++..+||+++..+.|++
T Consensus 90 ~~~~~gg~~~~~~~G~~ 106 (125)
T cd02951 90 FLDPEGGKEIARLPGYL 106 (125)
T ss_pred EEcCCCCceeEEecCCC
Confidence 44444489999999975
No 48
>PRK14368 Maf-like protein; Provisional
Probab=20.76 E-value=1e+02 Score=25.67 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=33.7
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
...+|+.-|---+++||+.++-++.- -|+..|+..+..|||-+
T Consensus 120 ~~~~~~t~V~f~~l~~~~I~~Yl~~~ep~dkAGay~Iqg~g~~li~~I~Gdy 171 (193)
T PRK14368 120 VTKAVRTKVFFKPLRDEEIRDYIATGCPMDKAGAYAIQGGAAHMVRKIDGSY 171 (193)
T ss_pred EEEEEEEEEEECCCCHHHHHHHHhcCCcccEeeeehhcCChhhcEeeeECCC
Confidence 34567666666679999999988765 78888888999999864
No 49
>PRK01526 Maf-like protein; Reviewed
Probab=20.65 E-value=99 Score=25.94 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=32.6
Q ss_pred ceeEEEEecCCCCHHHHHhhhccE---------EEEeCCeEEEEeeecee
Q 029831 113 QYETMMVLRPDMSEDERLALTQNC---------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 113 KYETMfILRPDLEEEAr~AlVEKF---------IIe~nGGEIv~~ieg~~ 153 (187)
.+|+.-|---+++||+.++-|+.- -|+..|+..+..|||-+
T Consensus 129 ~~~~t~V~f~~ls~~~I~~Yv~~~e~~dkAGaY~Iqg~g~~li~~I~Gd~ 178 (205)
T PRK01526 129 KIVQTIVKFKKLSDEEINFYCSLDEGIDKAGGCKISGYAEAFISFISGSY 178 (205)
T ss_pred EEEEEEEEECCCCHHHHHHHHhcCCCcCEeeeehhcCChhhcEeeeECCC
Confidence 466666665679999999988654 78888999999999965
No 50
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=20.11 E-value=1.1e+02 Score=20.57 Aligned_cols=27 Identities=11% Similarity=-0.005 Sum_probs=16.7
Q ss_pred HHHHhhhccE---EEEeCCeEEEEeeeceeec
Q 029831 127 DERLALTQNC---LLLGVACMWRYSIEGLFHW 155 (187)
Q Consensus 127 EAr~AlVEKF---IIe~nGGEIv~~ieg~~~~ 155 (187)
+...++++|+ +|.+ |.....+||-|.|
T Consensus 9 ~~~~~~l~~~GG~~l~~--~~~~~~leG~~~~ 38 (65)
T PF07045_consen 9 EAVPPILEKYGGRVLAR--GGEPEVLEGDWDP 38 (65)
T ss_dssp HHHHHHHHHTT-EEEEE--CEEEEEEEST-SS
T ss_pred HHHHHHHHHcCCEEEEE--CCceeEEecCCCC
Confidence 3455677777 6666 3356779996554
Done!