Query 029831
Match_columns 187
No_of_seqs 106 out of 166
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 06:28:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_F Ribosomal protein S6; s 100.0 8.8E-33 3E-37 223.1 1.3 87 56-147 11-100 (168)
2 3zzp_A TS9, ribosomal protein 99.1 1.1E-11 3.7E-16 88.3 0.2 35 109-143 41-77 (77)
3 1vmb_A 30S ribosomal protein S 99.0 3.1E-11 1.1E-15 94.0 1.3 41 106-146 13-56 (140)
4 1cqm_A Ribosomal protein S6; a 99.0 3.3E-11 1.1E-15 87.6 1.2 36 111-146 1-38 (101)
5 2kjw_A TS9, 30S ribosomal prot 99.0 2.3E-11 8E-16 90.0 -0.5 36 111-146 43-80 (96)
6 2j5a_A 30S ribosomal protein S 99.0 7.8E-11 2.7E-15 87.1 1.6 37 111-147 7-45 (110)
7 3r3t_A 30S ribosomal protein S 98.9 2.9E-11 1E-15 87.8 -2.4 36 111-146 4-41 (99)
8 3r8n_F 30S ribosomal protein S 98.8 1.6E-10 5.4E-15 84.1 -3.3 35 111-146 1-37 (100)
9 3i1m_F 30S ribosomal protein S 98.7 1.1E-09 3.9E-14 84.6 -1.1 35 111-146 1-37 (135)
10 1rbl_M Ribulose 1,5 bisphospha 87.5 0.12 4E-06 39.3 0.2 31 105-136 2-32 (109)
11 3lo3_A Uncharacterized conserv 63.1 3 0.0001 29.3 1.5 43 111-155 3-52 (94)
12 1wdd_S Ribulose bisphosphate c 45.8 4 0.00014 31.8 -0.2 29 107-136 5-33 (128)
13 1gk8_I Ribulose bisphosphate c 38.6 6.2 0.00021 31.2 -0.1 29 107-136 5-33 (140)
14 1svd_M Ribulose bisphosphate c 36.8 8.6 0.00029 29.1 0.4 30 106-136 5-34 (110)
15 1vla_A Hydroperoxide resistanc 32.7 32 0.0011 25.4 3.0 29 107-135 94-124 (150)
16 2cpz_A CUG triplet repeat RNA- 26.5 99 0.0034 20.5 4.3 21 116-136 27-49 (115)
17 1zxu_A AT5G01750 protein; PFAM 26.3 67 0.0023 24.7 3.9 38 111-153 33-71 (217)
18 1lql_A OSMC, osmotical inducib 25.3 50 0.0017 24.7 2.9 31 106-136 110-140 (166)
19 2dgu_A Heterogeneous nuclear r 23.7 47 0.0016 21.8 2.2 28 109-136 6-35 (103)
20 3dml_A Putative uncharacterize 21.8 5.2 0.00018 29.4 -3.1 54 99-153 22-96 (116)
21 1l6x_B Minimized B-domain of p 21.6 30 0.001 22.0 0.9 15 121-135 15-29 (34)
22 2j9c_A GLNK1, hypothetical nit 21.5 40 0.0014 24.2 1.7 38 113-154 3-40 (119)
23 2opl_A Hypothetical protein; s 20.7 80 0.0028 23.8 3.3 31 106-136 134-164 (187)
No 1
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.97 E-value=8.8e-33 Score=223.14 Aligned_cols=87 Identities=64% Similarity=1.051 Sum_probs=35.1
Q ss_pred CceeeeEeeeeeecccceeccCCCCC-CCCCCCCCCCCCcccccccccCCCCCCccccceeEEEEecCCCCHHHHHhhhc
Q 029831 56 NSVSLTVKAQTLDFSGSFFEGGGFGS-DDDPTSVPPGSVGTATAIEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQ 134 (187)
Q Consensus 56 ~~~~~~vk~~~ldf~gsffeg~g~gs-~~d~~s~~p~g~g~~~~~~~~~~~~~P~GMRKYETMfILRPDLEEEAr~AlVE 134 (187)
+..+++||+|+|||+|+|||| |||+ ||||++++ |+| +|++++|.+|||+|||+||+||||+|+++||+++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~Mr~YE~m~IlrPdl~eeev~alve 85 (168)
T 3bbn_F 11 SNYGPYVKAIALDFSGSFFEG-GFGGLDEDPPSTP--PAG--LAVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQ 85 (168)
T ss_dssp --------------------------------------------------------CEEEEEEEEECTTSCHHHHHSTTH
T ss_pred ccCcceeeeeeeccccceeec-cCCCcccCCCCCC--CCC--ccccccccccCCCCCCceeEEEEECCCCCHHHHHHHHH
Confidence 456899999999999999999 9999 99999988 666 89999999999999999999999999999999999999
Q ss_pred cE--EEEeCCeEEEE
Q 029831 135 NC--LLLGVACMWRY 147 (187)
Q Consensus 135 KF--IIe~nGGEIv~ 147 (187)
|| +|+++||+|+.
T Consensus 86 r~~~iI~~~GG~I~~ 100 (168)
T 3bbn_F 86 KYEELLVAGGAMYVE 100 (168)
T ss_dssp HHHHHHTTTSCEEEE
T ss_pred HHHHHHHHCCCEEEE
Confidence 99 99999997764
No 2
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=99.09 E-value=1.1e-11 Score=88.26 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=32.7
Q ss_pred ccccceeEEEEecCCCCHHHHHhhhccE--EEEeCCe
Q 029831 109 PGLRQYETMMVLRPDMSEDERLALTQNC--LLLGVAC 143 (187)
Q Consensus 109 ~GMRKYETMfILRPDLEEEAr~AlVEKF--IIe~nGG 143 (187)
..+|+||+||||+|+|+||++++++||| +|+++||
T Consensus 41 d~~r~YE~m~Il~P~l~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 41 TTPGRYEVNIVLNPNLDQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp SSTTEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 4579999999999999999999999999 9998887
No 3
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=99.05 E-value=3.1e-11 Score=94.04 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=35.4
Q ss_pred CCCccccceeEEEEecCCCCHHHHHhhhccE--EEEeC-CeEEE
Q 029831 106 QCPPGLRQYETMMVLRPDMSEDERLALTQNC--LLLGV-ACMWR 146 (187)
Q Consensus 106 ~~P~GMRKYETMfILRPDLEEEAr~AlVEKF--IIe~n-GGEIv 146 (187)
--|.+||+||+||||+|+|++|+++++++|| +|+++ ||+|.
T Consensus 13 ~~~~~Mr~YE~~~Il~P~l~ee~v~~~ve~~~~~I~~~~GG~I~ 56 (140)
T 1vmb_A 13 MAYVKERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKID 56 (140)
T ss_dssp ----CCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 3578899999999999999999999999999 99999 99775
No 4
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=99.04 E-value=3.3e-11 Score=87.58 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=34.4
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE--EEEeCCeEEE
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC--LLLGVACMWR 146 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF--IIe~nGGEIv 146 (187)
||+||+|||++|++++|++++++++| +|+++||+|.
T Consensus 1 M~~YE~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~ 38 (101)
T 1cqm_A 1 MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVE 38 (101)
T ss_dssp CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 99999999999999999999999999 9999999775
No 5
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=99.02 E-value=2.3e-11 Score=89.98 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=34.6
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE--EEEeCCeEEE
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC--LLLGVACMWR 146 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF--IIe~nGGEIv 146 (187)
||+||+|||++||++||+++++++|| +|+++||+|.
T Consensus 43 Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~gG~i~ 80 (96)
T 2kjw_A 43 PGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVE 80 (96)
T ss_dssp SSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred hhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999 9999999865
No 6
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=99.00 E-value=7.8e-11 Score=87.11 Aligned_cols=37 Identities=27% Similarity=0.410 Sum_probs=34.9
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE--EEEeCCeEEEE
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC--LLLGVACMWRY 147 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF--IIe~nGGEIv~ 147 (187)
||+||+|||++|+++||++++++++| +|+++||+|..
T Consensus 7 M~~YE~~~Il~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~ 45 (110)
T 2j5a_A 7 LRYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILY 45 (110)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCcceEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999 99999997754
No 7
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=98.94 E-value=2.9e-11 Score=87.82 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=34.4
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE--EEEeCCeEEE
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC--LLLGVACMWR 146 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF--IIe~nGGEIv 146 (187)
||+||+|||++|+++||++++++++| +|+++||+|.
T Consensus 4 M~~YE~~~Il~p~~~~e~~~~~~~~~~~~i~~~gg~i~ 41 (99)
T 3r3t_A 4 MRKYEIMYIIRPGVEEEAQKALVERFAGVLTNNGAEII 41 (99)
T ss_dssp CCCCCCCCCCCTTSCHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CcceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 99999999999999999999999999 9999999765
No 8
>3r8n_F 30S ribosomal protein S6; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_F 3fih_F* 3iy8_F 3j18_F* 2wwl_F 3oar_F 3oaq_F 3ofb_F 3ofa_F 3ofp_F 3ofx_F 3ofy_F 3ofo_F 3r8o_F 4a2i_F 4gd1_F 4gd2_F 2gy9_F 2gyb_F
Probab=98.78 E-value=1.6e-10 Score=84.09 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=33.0
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE--EEEeCCeEEE
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC--LLLGVACMWR 146 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF--IIe~nGGEIv 146 (187)
||+||+|||++|+++ |++++++++| +|+++||+|.
T Consensus 1 M~~YE~~~Il~p~~~-e~~~~~~~~~~~~i~~~gg~i~ 37 (100)
T 3r8n_F 1 MRHYEIVFMVHPDQS-EQVPGMIERYTAAITGAEGKIH 37 (100)
T ss_dssp CEEECCCCEECGGGT-THHHHHHHHHHHHHHTTTCBCC
T ss_pred CCceEEEEEECCCch-HHHHHHHHHHHHHHHHCCCEEE
Confidence 999999999999998 8999999999 9999999775
No 9
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ...
Probab=98.69 E-value=1.1e-09 Score=84.63 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=33.0
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE--EEEeCCeEEE
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC--LLLGVACMWR 146 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF--IIe~nGGEIv 146 (187)
||+||+||||+|+++ |++++++++| +|+++||+|.
T Consensus 1 Mr~YE~~~Il~P~~~-e~v~~~ve~~~~~I~~~GG~I~ 37 (135)
T 3i1m_F 1 MRHYEIVFMVHPDQS-EQVPGMIERYTAAITGAEGKIH 37 (135)
T ss_dssp CCEECBEEEECSTTT-TSHHHHHHHHHHHHHHTTCEEC
T ss_pred CCceEEEEEECCCch-HHHHHHHHHHHHHHHHCCCEEE
Confidence 999999999999998 8999999999 9999999775
No 10
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=87.49 E-value=0.12 Score=39.33 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=24.7
Q ss_pred CCCCccccceeEEEEecCCCCHHHHHhhhccE
Q 029831 105 PQCPPGLRQYETMMVLRPDMSEDERLALTQNC 136 (187)
Q Consensus 105 ~~~P~GMRKYETMfILRPDLEEEAr~AlVEKF 136 (187)
-|-|+|||+|||.- -=|+|+||+..+-|+-.
T Consensus 2 ~~~~~~~~~~etfS-yLP~lt~eqI~kQI~Yl 32 (109)
T 1rbl_M 2 MKTLPKERRFETFS-YLPPLSDRQIAAQIEYM 32 (109)
T ss_dssp CCCCCCCCCCSTTT-TSSCCCHHHHHHHHHHH
T ss_pred CccCCCcccccccc-cCCCCCHHHHHHHHHHH
Confidence 36789999999954 44779999998877765
No 11
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=63.14 E-value=3 Score=29.32 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=22.3
Q ss_pred ccceeEEEEecCCCCHHHHHhhhccE--EEEeCCeEEE-----Eeeeceeec
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQNC--LLLGVACMWR-----YSIEGLFHW 155 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVEKF--IIe~nGGEIv-----~~ieg~~~~ 155 (187)
|..| .+.=++. .+.|+-++=.+++ +|.++||+++ ..+||-|.|
T Consensus 3 m~aY-~i~~~~v-~d~e~y~~Y~~~~~~~l~~~GG~~l~rg~~~~lEG~~~~ 52 (94)
T 3lo3_A 3 ATAY-IIVGLTP-KDAEKLQQYGARVASTLAKYSGEVLVKGSVEQLHGKFEH 52 (94)
T ss_dssp CCEE-EEEEEEE-CCHHHHHHHHHHHHHHHHTTTCEEEEEEECEEEESCCCC
T ss_pred ccEE-EEEEEEE-CCHHHHHHHHHHHHHHHHHcCCEEEEEcccccccCCCCC
Confidence 6677 3322332 3455555444444 5555555544 458888755
No 12
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=45.81 E-value=4 Score=31.82 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCccccceeEEEEecCCCCHHHHHhhhccE
Q 029831 107 CPPGLRQYETMMVLRPDMSEDERLALTQNC 136 (187)
Q Consensus 107 ~P~GMRKYETMfILRPDLEEEAr~AlVEKF 136 (187)
-|-|.|||||+ =-=|+|+||+..+-|+-.
T Consensus 5 ~p~~~~~~~tf-SyLP~lt~eqI~kQI~Yl 33 (128)
T 1wdd_S 5 PIEGIKKFETL-SYLPPLTVEDLLKQIEYL 33 (128)
T ss_dssp CSSSCCCCSTT-TTSSCCCHHHHHHHHHHH
T ss_pred CCCCCcccccc-ccCCCCCHHHHHHHHHHH
Confidence 47789999994 455779999988877765
No 13
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=38.59 E-value=6.2 Score=31.25 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=23.0
Q ss_pred CCccccceeEEEEecCCCCHHHHHhhhccE
Q 029831 107 CPPGLRQYETMMVLRPDMSEDERLALTQNC 136 (187)
Q Consensus 107 ~P~GMRKYETMfILRPDLEEEAr~AlVEKF 136 (187)
-|-|.|||||+ =-=|+|++|+..+-|+-.
T Consensus 5 ~p~~~~~~etf-SyLP~lt~eqI~kQI~Yl 33 (140)
T 1gk8_I 5 TPVNNKMFETF-SYLPPLTDEQIAAQVDYI 33 (140)
T ss_dssp CCSSCCCCSTT-TTSSCCCHHHHHHHHHHH
T ss_pred CCcCCceeccc-ccCCCCCHHHHHHHHHHH
Confidence 37789999994 445779999998877765
No 14
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=36.77 E-value=8.6 Score=29.07 Aligned_cols=30 Identities=23% Similarity=0.172 Sum_probs=23.0
Q ss_pred CCCccccceeEEEEecCCCCHHHHHhhhccE
Q 029831 106 QCPPGLRQYETMMVLRPDMSEDERLALTQNC 136 (187)
Q Consensus 106 ~~P~GMRKYETMfILRPDLEEEAr~AlVEKF 136 (187)
|-.+|.|+|||.- -=|+|++|+..+-|+-.
T Consensus 5 ~~~~~~~~~etfS-yLP~lt~eqI~kQV~Yl 34 (110)
T 1svd_M 5 QDYKQSLKYETFS-YLPPMNAERIRAQIKYA 34 (110)
T ss_dssp CCCCCCCCCSTTT-TSCCCCHHHHHHHHHHH
T ss_pred cccCCCccccccc-cCCCCCHHHHHHHHHHH
Confidence 4457999999944 44779999988877654
No 15
>1vla_A Hydroperoxide resistance protein OSMC; TM0919, structural GE JCSG, protein structure initiative, PSI, joint center for S genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: d.227.1.2
Probab=32.70 E-value=32 Score=25.42 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=22.7
Q ss_pred CCccccceeEEEEec-C-CCCHHHHHhhhcc
Q 029831 107 CPPGLRQYETMMVLR-P-DMSEDERLALTQN 135 (187)
Q Consensus 107 ~P~GMRKYETMfILR-P-DLEEEAr~AlVEK 135 (187)
-|.|+.+-.+-+.+. + ++++|++++++++
T Consensus 94 ~~~~~~~I~~~~~v~~~~~~~~e~~~~l~~~ 124 (150)
T 1vla_A 94 HPRIFTKVHLKYIFKFDGEPPKDKVEKAVQL 124 (150)
T ss_dssp SSCCEEEEEEEEEEEESSSCCHHHHHHHHHH
T ss_pred CCCceEEEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 355677777888888 7 9999999887764
No 16
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=26.47 E-value=99 Score=20.45 Aligned_cols=21 Identities=10% Similarity=0.341 Sum_probs=18.3
Q ss_pred EEEE--ecCCCCHHHHHhhhccE
Q 029831 116 TMMV--LRPDMSEDERLALTQNC 136 (187)
Q Consensus 116 TMfI--LRPDLEEEAr~AlVEKF 136 (187)
++|| |.++++||...++.++|
T Consensus 27 ~l~V~nLp~~~t~~~l~~~F~~~ 49 (115)
T 2cpz_A 27 NLFIYHLPQEFGDQDLLQMFMPF 49 (115)
T ss_dssp CEEEESCCSSCCHHHHHHHHGGG
T ss_pred EEEEeCCCCCCCHHHHHHHHHhc
Confidence 5777 67899999999999998
No 17
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=26.27 E-value=67 Score=24.71 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=26.7
Q ss_pred ccceeEEEEecCCCCHHHHHhhhc-cEEEEeCCeEEEEeeecee
Q 029831 111 LRQYETMMVLRPDMSEDERLALTQ-NCLLLGVACMWRYSIEGLF 153 (187)
Q Consensus 111 MRKYETMfILRPDLEEEAr~AlVE-KFIIe~nGGEIv~~ieg~~ 153 (187)
...+++.|.++-.+.- +-+ +|.|.+..|++++-++|++
T Consensus 33 ~~~~~~~l~vkqk~~~-----~~~~~f~V~D~~G~~vf~V~~~~ 71 (217)
T 1zxu_A 33 CAPYPIDMAIVRKMMS-----LTDGNFVITDVNGNLLFKVKEPV 71 (217)
T ss_dssp BCSSCEEEEEECC----------CCCEEEEETTSCEEEEEECSS
T ss_pred cCCCCcEEEEEEEEeE-----eeCCCEEEEeCCCCEEEEEEccc
Confidence 4568888899876433 335 8866677799999999985
No 18
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=25.26 E-value=50 Score=24.73 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=25.8
Q ss_pred CCCccccceeEEEEecCCCCHHHHHhhhccE
Q 029831 106 QCPPGLRQYETMMVLRPDMSEDERLALTQNC 136 (187)
Q Consensus 106 ~~P~GMRKYETMfILRPDLEEEAr~AlVEKF 136 (187)
.-|.|+.+-++-+.+..++++|++++++++.
T Consensus 110 ~~~~~f~~i~~~v~l~~~~~~e~~~~l~~~a 140 (166)
T 1lql_A 110 DGYFGLREINLHWEIHSPNSETEIKEFIDFV 140 (166)
T ss_dssp SSCCSEEEEEEEEEEECSSCHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEEEcCCCCHHHHHHHHHHH
Confidence 3466787888888898889999999999865
No 19
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=23.66 E-value=47 Score=21.75 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=21.5
Q ss_pred ccccceeEEEE--ecCCCCHHHHHhhhccE
Q 029831 109 PGLRQYETMMV--LRPDMSEDERLALTQNC 136 (187)
Q Consensus 109 ~GMRKYETMfI--LRPDLEEEAr~AlVEKF 136 (187)
.+|.+.-++|| |.++++||...++.++|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~ 35 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQF 35 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 34555667888 56789999999988888
No 20
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=21.82 E-value=5.2 Score=29.35 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=30.5
Q ss_pred ccccCCCCCCcc--c-----cceeE------EEEecCCCCHHHHHhhhcc--E------EEEeCCeEEEEeeecee
Q 029831 99 IEDKEEPQCPPG--L-----RQYET------MMVLRPDMSEDERLALTQN--C------LLLGVACMWRYSIEGLF 153 (187)
Q Consensus 99 ~~~~~~~~~P~G--M-----RKYET------MfILRPDLEEEAr~AlVEK--F------IIe~nGGEIv~~ieg~~ 153 (187)
+-+=..+-||+= | ..|+. +-|++.|++++.-..+..+ + |+-+ +|+.+..|+||.
T Consensus 22 LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~-~G~ev~Ri~G~~ 96 (116)
T 3dml_A 22 LLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMA-GDVESGRLEGYP 96 (116)
T ss_dssp EEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEE-TTEEEEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEE-CCEEEeeecCCC
Confidence 334444566654 2 45654 4566667776532233333 2 4455 678888999984
No 21
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=21.55 E-value=30 Score=21.96 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=12.7
Q ss_pred cCCCCHHHHHhhhcc
Q 029831 121 RPDMSEDERLALTQN 135 (187)
Q Consensus 121 RPDLEEEAr~AlVEK 135 (187)
.|+|+||+|++-|+.
T Consensus 15 ~~nLtEeQrn~yI~s 29 (34)
T 1l6x_B 15 DPNLNEEQRNAKIKS 29 (34)
T ss_dssp CTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHhHHHH
Confidence 589999999987764
No 22
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=21.53 E-value=40 Score=24.17 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=28.6
Q ss_pred ceeEEEEecCCCCHHHHHhhhccEEEEeCCeEEEEeeeceee
Q 029831 113 QYETMMVLRPDMSEDERLALTQNCLLLGVACMWRYSIEGLFH 154 (187)
Q Consensus 113 KYETMfILRPDLEEEAr~AlVEKFIIe~nGGEIv~~ieg~~~ 154 (187)
=++++.|++|+.-|+.++|+.+- ...|.-+...-|++.
T Consensus 3 Mk~I~aII~~~~~~~v~~aL~~~----G~~g~Tv~~v~G~G~ 40 (119)
T 2j9c_A 3 MKKVEAIIRPEKLEIVKKALSDA----GYVGMTVSEVKGRGV 40 (119)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHT----TCCCEEEEEEEEECC
T ss_pred eEEEEEEECHHHHHHHHHHHHHC----CCCeEEEEeeEeecc
Confidence 46788999999999999998875 344555566777765
No 23
>2opl_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE P6G; 1.50A {Geobacter sulfurreducens} SCOP: d.227.1.1 PDB: 2opl_B*
Probab=20.66 E-value=80 Score=23.77 Aligned_cols=31 Identities=16% Similarity=0.451 Sum_probs=25.7
Q ss_pred CCCccccceeEEEEecCCCCHHHHHhhhccE
Q 029831 106 QCPPGLRQYETMMVLRPDMSEDERLALTQNC 136 (187)
Q Consensus 106 ~~P~GMRKYETMfILRPDLEEEAr~AlVEKF 136 (187)
.-|.|+.+-.+-+.+..++++|+++++++..
T Consensus 134 ~~~~~~~~I~l~~~v~~~~~~e~~~~l~~~a 164 (187)
T 2opl_A 134 EVPVGYREIRVFFSIDADLTDGQKEELIRMA 164 (187)
T ss_dssp SSCSSCSEEEEEEEEESSCCHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEEEEeCCCCHHHHHHHHHHH
Confidence 3467788888888888899999999998865
Done!