BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029832
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VKB|A Chain A, Crystal Structure Of An Aig2-Like Protein (A2ld1, Ggact,
Mgc7867) From Mus Musculus At 1.90 A Resolution
Length = 161
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 18 IFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLV-CGPYNIPYLINLPGSGNR 76
IF YGTLKRG PNH +M A F G CT ES+PLV G +NIP+L+ LPG G+
Sbjct: 16 IFVYGTLKRGQPNHKVMLD-HSHGLAAFRGRGCTVESFPLVIAGEHNIPWLLYLPGKGHC 74
Query: 77 VKGELYSVSTQGLARLDELEGTWFGHYER--LPIRLIEGGREGNDGN 121
V GE+Y V Q L LD+ E Y+R L ++++E +G+ G+
Sbjct: 75 VTGEIYEVDEQMLRFLDDFEDC-PSMYQRTALQVQVLEWEGDGDPGD 120
>pdb|2KL2|A Chain A, Nmr Solution Structure Of A2ld1 (Gi:13879369)
Length = 149
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 18 IFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLV-CGPYNIPYLINLPGSGNR 76
IF YGTLKRG PNH +M A F G CT ES+PLV G +NIP+L+ LPG G+
Sbjct: 4 IFVYGTLKRGQPNHKVMLD-HSHGLAAFRGRGCTVESFPLVIAGEHNIPWLLYLPGKGHC 62
Query: 77 VKGELYSVSTQGLARLDELEGTWFGHYER--LPIRLIEGGREGNDGN 121
V GE+Y V Q L LD+ E Y+R L ++++E +G+ G+
Sbjct: 63 VTGEIYEVDEQMLRFLDDFEDC-PSMYQRTALQVQVLEWEGDGDPGD 108
>pdb|3JUB|A Chain A, Human Gamma-Glutamylamine Cyclotransferase
pdb|3JUC|A Chain A, Human Gamma-Glutamylamine Cyclotransferase Complex With
5- Oxoproline
Length = 153
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 17 LIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLV-CGPYNIPYLINLPGSGN 75
L+F YGTLKRG PNH +++ +AA F T E YPLV G +NIP+L++LPGSG
Sbjct: 3 LVFVYGTLKRGQPNHRVLRDGAHGSAA-FRARGRTLEPYPLVIAGEHNIPWLLHLPGSGR 61
Query: 76 RVKGELYSVSTQGLARLDELE 96
V+GE+Y+V + L LD+ E
Sbjct: 62 LVEGEVYAVDERMLRFLDDFE 82
>pdb|3JUD|A Chain A, Human Gamma-Glutamylamine Cyclotransferase, E82q Mutant
Length = 153
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 17 LIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLV-CGPYNIPYLINLPGSGN 75
L+F YGTLKRG PNH +++ +AA F T E YPLV G +NIP+L++LPGSG
Sbjct: 3 LVFVYGTLKRGQPNHRVLRDGAHGSAA-FRARGRTLEPYPLVIAGEHNIPWLLHLPGSGR 61
Query: 76 RVKGELYSVSTQGLARLDELE 96
V+GE+Y+V + L LD+ +
Sbjct: 62 LVEGEVYAVDERMLRFLDDFQ 82
>pdb|1V30|A Chain A, Crystal Structure Of Uncharacterized Protein Ph0828 From
Pyrococcus Horikoshii
Length = 124
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 12 KQQTHLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLVCGPYNIPYLINLP 71
K+++ I YGTL++G P H+ ++ A FLG E Y L +PY +
Sbjct: 4 KEKSVRIAVYGTLRKGKPLHWYLK------GAKFLGEDWI-EGYQLYFE--YLPYAVKGK 54
Query: 72 GSGNRVKGELYSVSTQGLARLDELE 96
G ++K E+Y V + R++E+E
Sbjct: 55 G---KLKVEVYEVDKETFERINEIE 76
>pdb|2JQV|A Chain A, Solution Structure At3g28950.1 From Arabidopsis Thaliana
Length = 165
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 8 SNESKQQTHLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLVCGPYNIPYL 67
S S Q+H +F YG++ ++ + D AV G + Y L +PY
Sbjct: 1 STSSDPQSHNVFVYGSILEPAVAAVILDRTADTVPAVLHG----YHRYKL----KGLPYP 52
Query: 68 INLPGSGNRVKGELYS-VSTQGLARLDELEGTWFGHYERLPIRLI 111
+ +V G++ + VS L D +EG YER+ + ++
Sbjct: 53 CIVSSDSGKVNGKVITGVSDAELNNFDVIEG---NDYERVTVEVV 94
>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
From Archaeoglobus Fulgidus, Northeast Structural
Genomics Target Gr165
Length = 262
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 38 MDQNAAVFLGPYCTHESYPL-------VCGPYNIPYLINLPGSGNRVKGELYSVSTQGLA 90
+ +N + F+ P C H+SY + YNI + ++P ++ EL ++ G
Sbjct: 187 LVENXSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIP-----IEEELIKLADSG-- 239
Query: 91 RLDELEGTWF 100
R++E E WF
Sbjct: 240 RIEEYEKDWF 249
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor
pdb|2X24|B Chain B, Bovine Acc2 Ct Domain In Complex With Inhibitor
Length = 793
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 137 NRSFGEGLWEKKGKVGMNEYTEYDGQEYVAIDKRAKGVCIVEEIASFLSSD 187
N+ G ++ ++G + ++G +V + +GVC + E S++ D
Sbjct: 301 NKVLGRDVYTSNNQLGGVQIMHHNGVSHVTVPDDFEGVCTILEWLSYMPKD 351
>pdb|1WLN|A Chain A, Solution Structure Of The Fha Domain Of Mouse Afadin 6
Length = 120
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 59 CGPYNIPYLINLP--GSGNRVKGELY----SVSTQGLARLDELEGTWFG 101
GP +PYL+ L GS +R K +LY SV+ G + D+ FG
Sbjct: 6 SGPEKLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFG 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,216,691
Number of Sequences: 62578
Number of extensions: 266588
Number of successful extensions: 469
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 12
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)