Query 029832
Match_columns 187
No_of_seqs 198 out of 798
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4450 Uncharacterized conser 100.0 7.6E-43 1.6E-47 272.1 6.9 165 12-186 3-168 (168)
2 PF06094 AIG2: AIG2-like famil 99.9 4.3E-23 9.4E-28 151.1 13.3 101 18-137 1-102 (102)
3 COG2105 Uncharacterized conser 99.9 2.6E-23 5.7E-28 158.2 10.8 97 18-139 4-102 (120)
4 cd06661 GGCT_like GGCT-like do 99.8 2.1E-19 4.5E-24 130.0 11.4 98 18-136 1-99 (99)
5 PHA03014 hypothetical protein; 99.6 7.1E-14 1.5E-18 112.1 13.0 107 16-138 3-116 (163)
6 PF13772 AIG2_2: AIG2-like fam 98.9 3.6E-09 7.9E-14 75.5 7.5 53 76-139 1-53 (83)
7 KOG4059 Uncharacterized conser 98.7 2.4E-08 5.2E-13 79.4 4.7 111 7-137 15-131 (193)
8 TIGR02713 allophanate_hyd allo 98.1 2.6E-05 5.6E-10 73.5 10.4 93 14-117 435-531 (561)
9 PRK08186 allophanate hydrolase 98.0 4.2E-05 9.1E-10 72.6 11.1 93 14-117 470-565 (600)
10 COG3703 ChaC Uncharacterized p 97.5 0.0014 3E-08 53.8 10.2 110 16-144 12-132 (190)
11 PF04752 ChaC: ChaC-like prote 97.3 0.0017 3.6E-08 53.0 8.6 68 63-139 44-118 (178)
12 KOG3182 Predicted cation trans 93.6 1 2.3E-05 37.4 10.0 66 64-139 54-125 (212)
13 PF11962 Peptidase_G2: Peptida 23.3 1.1E+02 0.0024 26.0 3.7 24 131-172 141-164 (228)
No 1
>KOG4450 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.6e-43 Score=272.15 Aligned_cols=165 Identities=48% Similarity=0.809 Sum_probs=146.1
Q ss_pred ccCcceEEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEEEC-CCCCeEEEecCCCCceEEEEEEEEChhhhH
Q 029832 12 KQQTHLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLVCG-PYNIPYLINLPGSGNRVKGELYSVSTQGLA 90 (187)
Q Consensus 12 ~~~~~~lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~~g-~~~yP~l~~~p~~g~~V~GEly~V~~~~L~ 90 (187)
.+++.+||||||||+|+|||.+|++.+ ++.|.|+|.++|..+|||++| .|++|+|+..||.|..|.||||+||+++|.
T Consensus 3 ~s~~~lvFVYGTLKrg~pNh~~L~d~~-~g~A~F~gr~~T~~kyPLVigt~ynIPfLLnkpGsG~~V~GElY~Vd~rmL~ 81 (168)
T KOG4450|consen 3 GSAKNLVFVYGTLKRGQPNHFLLEDLI-NGDAVFIGRGTTLLKYPLVIGTRYNIPFLLNKPGSGYHVEGELYEVDERMLS 81 (168)
T ss_pred cccceEEEEEeeecCCCCCchhhhhcc-CCceEEEEeceeccccceEeecccCCceEEcCCCCcceeeeEEEEeCHHHHh
Confidence 467789999999999999999999886 799999999999999999987 899999999999999999999999999999
Q ss_pred HhhcccCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecCCCCCcchhhhcCCcceeccccccCccccccccC
Q 029832 91 RLDELEGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFANRSFGEGLWEKKGKVGMNEYTEYDGQEYVAIDKR 170 (187)
Q Consensus 91 ~LD~~Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~~~~~~~l~~~~~~~~~~~Y~~~~~~~Y~~r~~r 170 (187)
+||+||++| +.|.|++++|..++..+ .+.. ++.+-||+|. ..+|.+.||. ++.+.+|..+.+++|++|.+|
T Consensus 82 ~LD~lE~~~-~~Y~R~~i~v~~~ede~-eg~g---~~~v~c~~Y~-~~~fpe~l~~---~~~~~sY~~~~~~~Yv~r~~R 152 (168)
T KOG4450|consen 82 RLDELEGCP-NHYEREPIRVIEEEDEE-EGEG---GVTVQCAVYA-HFGFPEELWE---KRGLCSYGENDGHPYVRRKDR 152 (168)
T ss_pred hhHhhcccH-HHhhhhhhHHHHhhhhc-ccCC---CceeeehhHH-HhcCCHHHHh---ccccccccCCCCccccccccc
Confidence 999999996 99999999998765211 1101 2334489875 4799999975 789999999999999999999
Q ss_pred CCCccHHHHHHHhhcC
Q 029832 171 AKGVCIVEEIASFLSS 186 (187)
Q Consensus 171 ~~~~~~~~~~~~~~~~ 186 (187)
|...+++|+|..|+||
T Consensus 153 ~~~~~~~Ddi~~~vss 168 (168)
T KOG4450|consen 153 PMFSSALDDIEYFVSS 168 (168)
T ss_pred ccccchhhhhhhhccC
Confidence 9999999999999986
No 2
>PF06094 AIG2: AIG2-like family; InterPro: IPR009288 AIG2 is an Arabidopsis protein that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 []. Its structure consists of a five-stranded beta-barrel surrounded by two alpha-helices and a small beta-sheet. A long flexible alpha-helix protrudes from the structure at the C-terminal end. Conserved residues in a hydrophilic cavity, which are able to bind small ligands, may act as an active site in AIG2-like proteins [].; PDB: 1XHS_A 2KL2_A 1VKB_A 3JUD_A 3JUB_A 3JUC_A 2JQV_A 2QIK_A 2G0Q_A 1V30_A.
Probab=99.90 E-value=4.3e-23 Score=151.09 Aligned_cols=101 Identities=39% Similarity=0.553 Sum_probs=80.7
Q ss_pred EEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEEECCCCCeEEEecCCCCc-eEEEEEEEEChhhhHHhhccc
Q 029832 18 IFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLVCGPYNIPYLINLPGSGN-RVKGELYSVSTQGLARLDELE 96 (187)
Q Consensus 18 lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~~g~~~yP~l~~~p~~g~-~V~GEly~V~~~~L~~LD~~E 96 (187)
||||||||.|++||.++.. ..+++++.+.+.+. .......+||+|++. +++ .|.|+||+|+++.|+.||+||
T Consensus 1 lFvYGTL~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~yP~l~~~--~~~~~V~G~l~~v~~~~l~~LD~~E 73 (102)
T PF06094_consen 1 LFVYGTLMDGEVNHSVLGR----PGAKFIGEPATLGG-RYLYGGGGYPALVPG--EGSGRVEGELYEVDDEELARLDEYE 73 (102)
T ss_dssp EEESSTTSTTSTTGHHGTS----GSSEEEEEEEEEEE-EEEETTSSCEEEESC--TTSSEEEEEEEEE-HHHHHHHHHHT
T ss_pred CEEECCCCCCCcChhhhhc----cceEEEEeeEEEEe-EEEeCCCCCCEEEEc--CCCCEEEEEEEEECHHHHHhhHhhc
Confidence 7999999999999998842 26789998877662 223444579999974 344 999999999999999999999
Q ss_pred CCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecC
Q 029832 97 GTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFAN 137 (187)
Q Consensus 97 g~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~ 137 (187)
+.+ +.|+|+.++|.+.+ | +.++ ||||+++
T Consensus 74 ~~~-~~Y~R~~v~v~~~~--g----~~~~-----a~vYv~~ 102 (102)
T PF06094_consen 74 GEG-SLYRRVRVPVELGD--G----EEVE-----AWVYVWN 102 (102)
T ss_dssp TTT-TSEEEEEEEEECCT--S----SEEE-----EEEEEE-
T ss_pred CCC-CceEEEEEEEEeCC--C----CEeE-----EEEEEEC
Confidence 855 89999999999885 5 5556 9999874
No 3
>COG2105 Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=2.6e-23 Score=158.20 Aligned_cols=97 Identities=37% Similarity=0.573 Sum_probs=83.0
Q ss_pred EEEEcCCCCCCCChH-HHhhhhccCccEEeceeEecCceeEE-ECCCCCeEEEecCCCCceEEEEEEEEChhhhHHhhcc
Q 029832 18 IFSYGTLKRGFPNHY-LMQQLMDQNAAVFLGPYCTHESYPLV-CGPYNIPYLINLPGSGNRVKGELYSVSTQGLARLDEL 95 (187)
Q Consensus 18 lFVYGTL~~G~~nh~-~l~~~~~~~~a~~vg~a~t~~~y~L~-~g~~~yP~l~~~p~~g~~V~GEly~V~~~~L~~LD~~ 95 (187)
||||||||+|++||+ ++ .+++|++.++|.+ |.|+ +|. +||++++ +.+ .|+||||++|++.|+.||++
T Consensus 4 vfVYGTLr~Ge~N~~~~~------~~~~~~~~~~~~g-y~ly~lg~-~YP~~~~--g~~-~V~Gevy~~d~~~l~~LDel 72 (120)
T COG2105 4 VFVYGTLRPGEGNHHRYL------KGARFLGEASTKG-YQLYDLGP-GYPGLVP--GEG-KVHGEVYRIDEETLEALDEL 72 (120)
T ss_pred EEEEeccCCCCcchHHHH------hcCcccCcceeee-eeeeccCC-CCcEEcC--CCC-EEEEEEEEECHHHHhhhhhh
Confidence 999999999999999 55 4689999999866 8999 676 5899975 544 99999999999999999999
Q ss_pred cCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecCCC
Q 029832 96 EGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFANRS 139 (187)
Q Consensus 96 Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~~~ 139 (187)
|++. .|.|+.+.|.+.. | .. . ||+|+++..
T Consensus 73 E~~~--~y~r~~v~v~~~~--G----~~-~-----aw~Y~y~~~ 102 (120)
T COG2105 73 EDYG--GYYRREVEVTTPL--G----SK-E-----AWLYVYAER 102 (120)
T ss_pred hccC--ceEEEEEEEEcCC--C----CE-E-----EEEEEEcCC
Confidence 9985 7899889888875 5 33 4 999999754
No 4
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=99.82 E-value=2.1e-19 Score=130.00 Aligned_cols=98 Identities=42% Similarity=0.590 Sum_probs=81.9
Q ss_pred EEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEEE-CCCCCeEEEecCCCCceEEEEEEEEChhhhHHhhccc
Q 029832 18 IFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLVC-GPYNIPYLINLPGSGNRVKGELYSVSTQGLARLDELE 96 (187)
Q Consensus 18 lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~~-g~~~yP~l~~~p~~g~~V~GEly~V~~~~L~~LD~~E 96 (187)
+|+|||||.++.+|..+ ..+..++.|++. +|.+.. +..++|++++. +++.|.|+||+++++.|+.||++|
T Consensus 1 ~F~YGsl~~~~~~~~~~------~~~~~~~~a~l~-g~~l~~~~~~~~p~~~~~--~~~~v~G~v~~i~~~~l~~LD~~E 71 (99)
T cd06661 1 LFVYGTLMDGEVLHARL------GRALFLGPATLK-GYRLVFGGGSGYPGLVPG--PGARVWGELYEVDPEDLARLDAFE 71 (99)
T ss_pred CEEeccCCChhHhHhhC------CCCceEEEEEec-CcEEEecCCCccCEEEeC--CCCEEEEEEEEECHHHHHhhhhhc
Confidence 69999999999998874 456778888875 788874 32268999874 556999999999999999999999
Q ss_pred CCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEec
Q 029832 97 GTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFA 136 (187)
Q Consensus 97 g~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~ 136 (187)
+.+ +.|.|+.++|.+.+ | ..++ ||+|++
T Consensus 72 ~~~-~~Y~r~~v~v~~~~--~----~~~~-----a~~Y~~ 99 (99)
T cd06661 72 GVP-GGYRREEVEVELED--G----EGVE-----AWVYVA 99 (99)
T ss_pred CCC-CCeEEEEEEEEeCC--C----CEEE-----EEEEeC
Confidence 986 89999999999885 4 5666 999974
No 5
>PHA03014 hypothetical protein; Provisional
Probab=99.56 E-value=7.1e-14 Score=112.10 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=79.7
Q ss_pred ceEEEEcCCCCCCCChHHHhhhhc-cCccEEeceeEecC-ceeEE-ECCC--CCeEEEecCCCCceEEEEEEEEChhhhH
Q 029832 16 HLIFSYGTLKRGFPNHYLMQQLMD-QNAAVFLGPYCTHE-SYPLV-CGPY--NIPYLINLPGSGNRVKGELYSVSTQGLA 90 (187)
Q Consensus 16 ~~lFVYGTL~~G~~nh~~l~~~~~-~~~a~~vg~a~t~~-~y~L~-~g~~--~yP~l~~~p~~g~~V~GEly~V~~~~L~ 90 (187)
...|+||+-| |...|+..+. +.+|+++|.|.+.+ +|.|. -|.+ ++-.++ |.+|+.|+|.||+|+.+.|+
T Consensus 3 ~~YfAYGSNl----~~~qm~~Rcp~~~~a~~vg~a~L~~~~~~L~f~~~~~Ga~ATIv--p~~g~~V~Gvlw~i~~~dl~ 76 (163)
T PHA03014 3 KYYFGYGANQ----NINYLIHMHKLKIDFLNIKIGIILGHSFKLCYSKEIDSVIASIK--KDDNGIVFGILYEFNESIMK 76 (163)
T ss_pred eEEEEEccCc----CHHHHHHhCCCCCCCceEEEEEeeccceEEeccCCcCCceEEEE--ECCCCEEEEEEEEeCHHHHH
Confidence 4689999988 5567776542 12899999998631 34554 2322 233333 56788999999999999999
Q ss_pred HhhcccCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEE--ecCC
Q 029832 91 RLDELEGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGY--FANR 138 (187)
Q Consensus 91 ~LD~~Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY--~~~~ 138 (187)
.||++||+|.+.|+|..|+|.+.+ +| +.++ |++| ++++
T Consensus 77 ~LD~~EGvp~~~Y~~~~v~V~~~~-~~----~~~~-----a~~Y~~~~~~ 116 (163)
T PHA03014 77 KFDKQEFIDKNIYKLAKMNVLDLE-DE----KIIE-----AQAYKAILDD 116 (163)
T ss_pred HHhhhcCCCcCceEEEEEEEEeCC-CC----cEEE-----EEEEehhcCC
Confidence 999999998678999999998886 34 4555 9999 5543
No 6
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=98.94 E-value=3.6e-09 Score=75.51 Aligned_cols=53 Identities=38% Similarity=0.570 Sum_probs=46.9
Q ss_pred eEEEEEEEEChhhhHHhhcccCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecCCC
Q 029832 76 RVKGELYSVSTQGLARLDELEGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFANRS 139 (187)
Q Consensus 76 ~V~GEly~V~~~~L~~LD~~Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~~~ 139 (187)
+|+|.||+++++.++.||+.||.|.+.|+|..|+|...+ | +.+. ||+|+.++.
T Consensus 1 ~V~Gvly~l~~~d~~~LD~~Eg~~~g~Y~~~~v~V~~~~--g----~~~~-----a~tY~~~~~ 53 (83)
T PF13772_consen 1 RVWGVLYELSEEDLESLDRYEGVPIGAYRRIEVTVSTAD--G----KPVE-----AFTYVANPK 53 (83)
T ss_dssp EEEEEEEEEEGGGHHHHHHHTTTTTTSEEEEEEEEEETT--C----EEEE-----EEEEEESSE
T ss_pred CEEEEEEEECHHHHHHHHHhcCCCCCCEEEEEEEEEcCC--C----CEEE-----EEEEEcCCC
Confidence 599999999999999999999998668999999999853 6 6777 999998754
No 7
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2.4e-08 Score=79.44 Aligned_cols=111 Identities=22% Similarity=0.348 Sum_probs=84.4
Q ss_pred CccccccCcceEEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEEECC----C-C-CeEEEecCCCCceEEEE
Q 029832 7 NSNESKQQTHLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLVCGP----Y-N-IPYLINLPGSGNRVKGE 80 (187)
Q Consensus 7 ~~~~~~~~~~~lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~~g~----~-~-yP~l~~~p~~g~~V~GE 80 (187)
+.....+..-..|.||+-+-+..-|- ++.+|.+++.|.+ ..|+|-.+. | + ...++ |.+|+.|+|.
T Consensus 15 ~g~~~~~~~FlYFafGSNlL~~RIh~------rnpsA~~~c~a~L-~dfrLdFan~S~~W~G~vATI~--~t~GdeVWG~ 85 (193)
T KOG4059|consen 15 SGLNSTLNLFLYFAFGSNLLIKRIHI------RNPSAVRICPALL-PDFRLDFANESAGWSGSVATIV--PTQGDEVWGT 85 (193)
T ss_pred CCcchhhhhhhhhhcccchhhhheee------cCCCceeeccccC-cceeeeccccccccccceeEEe--cCCCCeEEEE
Confidence 33334444578999999886654332 4578999999985 788886431 2 2 33343 5678999999
Q ss_pred EEEEChhhhHHhhcccCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecC
Q 029832 81 LYSVSTQGLARLDELEGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFAN 137 (187)
Q Consensus 81 ly~V~~~~L~~LD~~Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~ 137 (187)
||.++.+.|..||+-||..-+.|.|..|.|.+.+ | +.+. |-+|.+.
T Consensus 86 vWKm~~snl~slDeQEgv~~G~Y~~~~V~V~t~e--g----~~it-----cR~Yl~s 131 (193)
T KOG4059|consen 86 VWKMDLSNLPSLDEQEGVSQGIYEPRTVYVKTHE--G----ESIT-----CRAYLLS 131 (193)
T ss_pred EEEcccccCccchhhhcccccceEEEEEEEecCC--C----ceee-----hhHhhhh
Confidence 9999999999999999997789999999999885 6 5665 9999764
No 8
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=98.08 E-value=2.6e-05 Score=73.53 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=72.0
Q ss_pred CcceEEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEE-EC-CCC-CeEEEecCC-CCceEEEEEEEEChhhh
Q 029832 14 QTHLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLV-CG-PYN-IPYLINLPG-SGNRVKGELYSVSTQGL 89 (187)
Q Consensus 14 ~~~~lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~-~g-~~~-yP~l~~~p~-~g~~V~GEly~V~~~~L 89 (187)
....|+|.|..|+|+|.|+.|.. .+++|++..+|...|+|| +. ... -|+|++.+. .|..|.||||+++.+.+
T Consensus 435 ~~~~~~v~gah~~g~pl~~~l~~----~~~~~~~~~~ta~~yrl~~l~~~~p~~pgl~~~~~~~g~~i~~e~w~~~~~~~ 510 (561)
T TIGR02713 435 RVVRLAVVGAHLSGMPLNWQLTE----RGARLLRTTRTAPDYRLYALAGTPPPKPGLVRVAPGGGAAIEVEVWELPAEAF 510 (561)
T ss_pred CceEEEEecccccCCCccHHHHh----CCCEEecccccCccceEEECCCCCCCCCceEeecCCCCCeEEEEEeeCCHHHH
Confidence 34679999999999998877743 689999999999999999 53 222 399998753 58899999999999988
Q ss_pred HHhhcccCCCCCCeeEEEEEEEeCCCCC
Q 029832 90 ARLDELEGTWFGHYERLPIRLIEGGREG 117 (187)
Q Consensus 90 ~~LD~~Eg~~~~~Y~R~~v~V~~~~~~G 117 (187)
..+ +-+.|+.+.. =.|++.+ |
T Consensus 511 ~~f--~~~~p~pl~~---g~~~l~d--g 531 (561)
T TIGR02713 511 GRF--VAAIPAPLGI---GTVTLAD--G 531 (561)
T ss_pred HHH--HhCCCCCCcc---ceEEecC--C
Confidence 866 5555544543 2456664 7
No 9
>PRK08186 allophanate hydrolase; Provisional
Probab=98.04 E-value=4.2e-05 Score=72.60 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=72.8
Q ss_pred CcceEEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEE-ECC-C-CCeEEEecCCCCceEEEEEEEEChhhhH
Q 029832 14 QTHLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLV-CGP-Y-NIPYLINLPGSGNRVKGELYSVSTQGLA 90 (187)
Q Consensus 14 ~~~~lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~-~g~-~-~yP~l~~~p~~g~~V~GEly~V~~~~L~ 90 (187)
....|.|.|..|+|+|.|+.|.. .+++|++..+|...|+|| +.. . .-|+|++.+..|..|.||||+++.+.+.
T Consensus 470 ~~~~~av~gah~~g~pl~~~l~~----~~~~~~~~~~ta~~yrl~~l~~~~~~~pgl~~~~~~g~~i~~e~w~~~~~~~~ 545 (600)
T PRK08186 470 DRVRLAVVGAHLSGMPLNHQLTS----RGARLLEATTTAPDYRLYALAGTPPPKPGLVRVAEGGAAIAVEVWELPPAAFG 545 (600)
T ss_pred CceEEEEecccccCCCccHHHHh----CCCEEecccccCccceEEeCCCCCCCCCceEEeCCCCCeEEEEEeeCCHHHHH
Confidence 35679999999999998877743 689999999999999999 532 1 3499998776688999999999999888
Q ss_pred HhhcccCCCCCCeeEEEEEEEeCCCCC
Q 029832 91 RLDELEGTWFGHYERLPIRLIEGGREG 117 (187)
Q Consensus 91 ~LD~~Eg~~~~~Y~R~~v~V~~~~~~G 117 (187)
.+ +-..|+.+.. =.|++.| |
T Consensus 546 ~f--~~~~p~pl~~---g~~~l~d--g 565 (600)
T PRK08186 546 SF--VAAIPAPLGI---GTVELAD--G 565 (600)
T ss_pred HH--HhCCCCCCcc---ceEEecC--C
Confidence 77 4555544543 2456674 7
No 10
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.0014 Score=53.80 Aligned_cols=110 Identities=23% Similarity=0.260 Sum_probs=74.6
Q ss_pred ceEEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEE----ECCCCCeEEEecCCCCceEEEEEEEEC----hh
Q 029832 16 HLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLV----CGPYNIPYLINLPGSGNRVKGELYSVS----TQ 87 (187)
Q Consensus 16 ~~lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~----~g~~~yP~l~~~p~~g~~V~GEly~V~----~~ 87 (187)
.+||-|||||-.-+-+.. ....|...|-.+ .+.+. -|...-|+++..=..|+...|.+|.|. ++
T Consensus 12 ~WVFgYGSLmW~P~f~~~-----e~~~a~~~G~~R---sfc~~s~~~RGT~~~PGlvl~L~~GGsc~GvafRip~~~~~~ 83 (190)
T COG3703 12 LWVFGYGSLMWNPGFEFT-----EVRRATLHGYHR---SFCLRSTDHRGTAEQPGLVLGLDRGGSCEGVAYRIPEAHAEE 83 (190)
T ss_pred eEEEEecceeecCCcccc-----ceeEEEEeccee---EEEEEEeeecCCcCCCceEEEeeCCCcEEEEEEEcCchhhHH
Confidence 799999999954332221 112344444332 12222 255556999764346789999999998 78
Q ss_pred hhHHhhcccCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecCC---CCCcch
Q 029832 88 GLARLDELEGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFANR---SFGEGL 144 (187)
Q Consensus 88 ~L~~LD~~Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~~---~~~~~l 144 (187)
.++.|++=|...+..|.-+.++|.+++ | ..+. |-+|+.++ +|...+
T Consensus 84 v~~yL~~RE~~~t~~y~p~~l~v~~~~--g----~~~~-----al~~v~~~~h~qyag~l 132 (190)
T COG3703 84 VLEYLREREMNYTLVYVPRWLPVELEG--G----RRVN-----ALVFVGDRKHPQYAGDL 132 (190)
T ss_pred HHHHHHHhhccccceeeeEEEEEecCC--C----cEEE-----EEEEEecCCccccCCCC
Confidence 999999999833378998899998885 6 5666 99998763 455544
No 11
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=97.29 E-value=0.0017 Score=52.96 Aligned_cols=68 Identities=31% Similarity=0.341 Sum_probs=47.5
Q ss_pred CCeEEEe--cCCCCceEEEEEEEECh----hhhHHhhcccCCCCCCeeEEEEEEEeCC-CCCCCCCceeeccccEEEEEe
Q 029832 63 NIPYLIN--LPGSGNRVKGELYSVST----QGLARLDELEGTWFGHYERLPIRLIEGG-REGNDGNGAVSVAAVEAEGYF 135 (187)
Q Consensus 63 ~yP~l~~--~p~~g~~V~GEly~V~~----~~L~~LD~~Eg~~~~~Y~R~~v~V~~~~-~~G~~~~~~v~~~~~~A~vY~ 135 (187)
..|+++. .+++++.++|.+|.|++ +.|+.||.=|-. +.|.+..+++.+.. .++ ..+ .+.|.+|+
T Consensus 44 e~PGrvltL~~~~~~~c~Gvayrv~~~~~~~~l~~L~~RE~~--~Gy~~~~v~~~~~~~~~~----~~~---~~~al~yv 114 (178)
T PF04752_consen 44 EQPGRVLTLDPGEEGSCWGVAYRVPEEDAEEVLEYLDEREMI--GGYTRHWVPFYPEVDTDS----GPV---IVEALVYV 114 (178)
T ss_pred CCCcceeeeeeCCCCEEEEEEEEecCcCHHHHHHHHhhcccc--cccceEEEEEEEeccCCC----Cce---EEEEEEEE
Confidence 4576653 34555899999999975 789999998883 46999999987621 111 122 12499999
Q ss_pred cCCC
Q 029832 136 ANRS 139 (187)
Q Consensus 136 ~~~~ 139 (187)
.++.
T Consensus 115 ~~~~ 118 (178)
T PF04752_consen 115 ADPD 118 (178)
T ss_pred ecCC
Confidence 8764
No 12
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=93.59 E-value=1 Score=37.39 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=45.7
Q ss_pred CeEEE--ecCCCCceEEEEEEEECh----hhhHHhhcccCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecC
Q 029832 64 IPYLI--NLPGSGNRVKGELYSVST----QGLARLDELEGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFAN 137 (187)
Q Consensus 64 yP~l~--~~p~~g~~V~GEly~V~~----~~L~~LD~~Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~ 137 (187)
.|+-+ ..|..+..-+|..|.|.. +.|+-||.=| . +.|.+..|++...+ +...++.+ .|-||+..
T Consensus 54 ~PGRv~TLi~~~e~~~wGvay~V~g~~~~~~l~yl~~RE-~--nGY~~~~v~f~~e~--~~~~p~v~-----~vlvyvaT 123 (212)
T KOG3182|consen 54 HPGRVATLIPYEEAITWGVAYRVRGKQASEVLEYLNVRE-L--NGYTTHEVEFYPED--AAELPEVL-----GVLVYVAT 123 (212)
T ss_pred CCceeEEeecCCcceEeeEEEEecchhHHHHHHHHHHHh-h--cCcceeeeeeeccC--CCCCCceE-----EEEEEEec
Confidence 45543 234556677999999973 5777777767 3 78999999999875 33222333 49999887
Q ss_pred CC
Q 029832 138 RS 139 (187)
Q Consensus 138 ~~ 139 (187)
+.
T Consensus 124 p~ 125 (212)
T KOG3182|consen 124 PD 125 (212)
T ss_pred CC
Confidence 54
No 13
>PF11962 Peptidase_G2: Peptidase_G2, IMC autoproteolytic cleavage domain; InterPro: IPR021865 This entry is represented by Bacteriophage phi-29, Gp12. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This presumed domain is functionally uncharacterised, it is annotated as the pre-neck appendage protein. The proteins are typically between 213 to 236 amino acids in length and have a conserved VGL sequence motif. ; PDB: 3GQH_A 3GQK_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A.
Probab=23.32 E-value=1.1e+02 Score=25.98 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=12.3
Q ss_pred EEEEecCCCCCcchhhhcCCcceeccccccCccccccccCCC
Q 029832 131 AEGYFANRSFGEGLWEKKGKVGMNEYTEYDGQEYVAIDKRAK 172 (187)
Q Consensus 131 A~vY~~~~~~~~~l~~~~~~~~~~~Y~~~~~~~Y~~r~~r~~ 172 (187)
.-.+..||.|.|.+ .|++|.+||+
T Consensus 141 ~~~p~~NP~ydp~~------------------~Y~pR~eR~E 164 (228)
T PF11962_consen 141 EKQPILNPDYDPSL------------------EYIPRSERPE 164 (228)
T ss_dssp EEEE-B-TT--TTS----------------------GGGSTT
T ss_pred ccccccCCCCCCcc------------------CccccccCCC
Confidence 56677888877766 5999999987
Done!