Query 029832
Match_columns 187
No_of_seqs 198 out of 798
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jud_A AIG2-like domain-contai 100.0 4.4E-37 1.5E-41 242.6 14.7 150 15-170 1-153 (153)
2 1vkb_A Hypothetical protein; g 100.0 1.3E-33 4.3E-38 224.4 15.8 141 14-170 12-161 (161)
3 2g0q_A AT5G39720.1 protein; st 99.9 7.2E-26 2.5E-30 181.4 6.8 147 14-187 16-172 (173)
4 2jqv_A AT3G28950, AIG2 protein 99.9 2.1E-25 7.3E-30 176.8 7.4 148 14-186 7-163 (165)
5 1xhs_A Hypothetical UPF0131 pr 99.9 4.6E-24 1.6E-28 161.8 8.5 94 17-139 2-96 (121)
6 1v30_A Hypothetical UPF0131 pr 99.9 2.3E-23 7.8E-28 158.8 9.3 96 14-139 6-101 (124)
7 2qik_A UPF0131 protein YKQA; N 99.9 1.1E-22 3.9E-27 173.7 11.6 102 15-141 2-104 (285)
8 3cry_A Gamma-glutamyl cyclotra 99.7 7E-18 2.4E-22 135.9 7.3 106 13-138 14-129 (188)
9 2qik_A UPF0131 protein YKQA; N 99.3 6.1E-12 2.1E-16 107.2 10.6 105 15-139 127-237 (285)
10 3gqh_A Preneck appendage prote 10.3 1.7E+02 0.0059 22.5 2.7 24 131-172 80-103 (163)
No 1
>3jud_A AIG2-like domain-containing protein 1; cyclotransferase, gamma-glutamylamine cyclotransferase, gamma-glutamyl-epsilon-lysine; 0.98A {Homo sapiens} SCOP: d.269.1.1 PDB: 3jub_A 3juc_A
Probab=100.00 E-value=4.4e-37 Score=242.61 Aligned_cols=150 Identities=33% Similarity=0.492 Sum_probs=121.8
Q ss_pred cceEEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEE-ECCCCCeEEEecCCCCceEEEEEEEEChhhhHHhh
Q 029832 15 THLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLV-CGPYNIPYLINLPGSGNRVKGELYSVSTQGLARLD 93 (187)
Q Consensus 15 ~~~lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~-~g~~~yP~l~~~p~~g~~V~GEly~V~~~~L~~LD 93 (187)
|.+||||||||+|++||++|++. .++.|+|+|.+.|.++||++ .|.+++|+++..|+.|+.|.|+||+|+++.|+.||
T Consensus 1 M~~vFVYGTL~~G~~Nh~~l~~~-~~~~A~~~G~~~t~~~Ypl~~~g~~~~P~l~~~p~~g~~V~G~ly~v~~~~l~~LD 79 (153)
T 3jud_A 1 MALVFVYGTLKRGQPNHRVLRDG-AHGSAAFRARGRTLEPYPLVIAGEHNIPWLLHLPGSGRLVEGEVYAVDERMLRFLD 79 (153)
T ss_dssp CEEEEECSTTSTTSTTGGGGTCG-GGCCEEEEEEEEESSCBCEEEETTTTEEEEBSCTTSSBCCEEEEEEECHHHHHHHH
T ss_pred CCEEEEeCCCCCCCcChHHHhcC-cCCCeEEEEEEEeCCCccEEEecCCCCceEEecCCCCCEEEEEEEEECHHHHHHHH
Confidence 67999999999999999999754 24679999999999999998 58888999999888888999999999999999999
Q ss_pred cccCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecCCCCCcchhhhcCCcceeccc--cccCccccccccC
Q 029832 94 ELEGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFANRSFGEGLWEKKGKVGMNEYT--EYDGQEYVAIDKR 170 (187)
Q Consensus 94 ~~Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~~~~~~~l~~~~~~~~~~~Y~--~~~~~~Y~~r~~r 170 (187)
+||++| ++|+|+.++|.+.+++|.......+++.++||||++ +.+.+.+ +++|.+++|+ +.|+.+|++|++|
T Consensus 80 ~~Eg~~-~~Y~R~~v~V~~~~~~~~~~~~~~~g~~v~A~vYv~-~~~~~~~---~~~p~l~~Y~~~~~~~~~y~~~~~r 153 (153)
T 3jud_A 80 DFQSCP-ALYQRTVLRVQLLEDRAPGAEEPPAPTAVQCFVYSR-ATFPPEW---AQLPHHDSYDSEGPHGLRYNPRENR 153 (153)
T ss_dssp HHTTTT-TSCEEEEEEEEEEC------CCSCCCCEEEEEEEEB-CCCCGGG---GGSCCCSSCCTTSTTCCCCCCC---
T ss_pred HhcCCC-CceEEEEEEEEeeccccccccccCCCCEEEEEEEEc-CCCCccc---ccCCchheEcCCCccCCcccccCCC
Confidence 999997 899999999998631110000000122334999987 5899999 8899999999 4699999999887
No 2
>1vkb_A Hypothetical protein; gamma-glutamyl cyclotransferase-like fold, structural genomi center for structural genomics, JCSG, protein structure INI PSI; 1.90A {Mus musculus} SCOP: d.269.1.1 PDB: 2kl2_A
Probab=100.00 E-value=1.3e-33 Score=224.38 Aligned_cols=141 Identities=36% Similarity=0.544 Sum_probs=123.1
Q ss_pred CcceEEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEEE-CCCCCeEEEecCCCCceEEEEEEEEChhhhHHh
Q 029832 14 QTHLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLVC-GPYNIPYLINLPGSGNRVKGELYSVSTQGLARL 92 (187)
Q Consensus 14 ~~~~lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~~-g~~~yP~l~~~p~~g~~V~GEly~V~~~~L~~L 92 (187)
-|.+||||||||+|++||++|.+. .++.|+|+|.+.|..+|+|++ |.+++|+++..|+.|+.|.||||+|++++|+.|
T Consensus 12 ~~~~vFVYGTLk~G~~Nh~~l~~~-r~~~A~~~G~~~tl~~YpL~~~g~~~~p~~~i~p~~g~~V~Gevy~v~~~~L~~L 90 (161)
T 1vkb_A 12 HMAHIFVYGTLKRGQPNHKVMLDH-SHGLAAFRGRGCTVESFPLVIAGEHNIPWLLYLPGKGHCVTGEIYEVDEQMLRFL 90 (161)
T ss_dssp CCEEEEECSTTSTTSTTTHHHHCG-GGCCEEEEEEEEESSCBCEEEETTTTEEEEESCTTSSBCCEEEEEEECHHHHHHH
T ss_pred cceEEEEcCCCCCCCcChHHHhhC-cCCCceEEEEEeecCCceEEEecCCCcceeEeecCCCCEEEEEEEEECHHHHHHH
Confidence 478999999999999999998763 357899999998889999995 777899999888888899999999999999999
Q ss_pred hcccCCCCCCeeEEEEEEEeC------CCCCCCCCceeeccccEEEEEecCCCCCcchhhhcCCcceeccc--cccCccc
Q 029832 93 DELEGTWFGHYERLPIRLIEG------GREGNDGNGAVSVAAVEAEGYFANRSFGEGLWEKKGKVGMNEYT--EYDGQEY 164 (187)
Q Consensus 93 D~~Eg~~~~~Y~R~~v~V~~~------~~~G~~~~~~v~~~~~~A~vY~~~~~~~~~l~~~~~~~~~~~Y~--~~~~~~Y 164 (187)
|+|||+| ++|+|+.|+|.+. + +| +.+. ||+|+++ .+.+.+ .+.++++.|+ ..|+..|
T Consensus 91 D~~Eg~p-~~Y~R~~v~V~~~~~~~~~~-~g----~~v~-----A~vYv~~-~~~~~l---ps~~Yl~i~~ga~~~gl~Y 155 (161)
T 1vkb_A 91 DDFEDCP-SMYQRTALQVQVLEWEGDGD-PG----DSVQ-----CFVYTTA-TYAPEW---LFLPYHESYDSEGPHGLRY 155 (161)
T ss_dssp HHHTTTT-TSCEEEEEEEEEEEEC-----CC----SEEE-----EEEEEES-CCCGGG---GGSCCCSSCCTTSTTCCCC
T ss_pred HHhcCCC-CceEEEEEEEEecccccccC-CC----CEEE-----EEEEEcC-CCCccC---CChhHHHHHhhHHHhCCCc
Confidence 9999998 9999999999872 2 24 5666 9999986 788888 7788999999 5788899
Q ss_pred cccccC
Q 029832 165 VAIDKR 170 (187)
Q Consensus 165 ~~r~~r 170 (187)
++|++|
T Consensus 156 v~r~~r 161 (161)
T 1vkb_A 156 NPRENR 161 (161)
T ss_dssp CCTTCC
T ss_pred ccccCC
Confidence 999887
No 3
>2g0q_A AT5G39720.1 protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana}
Probab=99.92 E-value=7.2e-26 Score=181.35 Aligned_cols=147 Identities=16% Similarity=0.313 Sum_probs=98.7
Q ss_pred CcceEEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEE-ECCCCCeEEEecCCCCceEEEEEEE-EChhhhHH
Q 029832 14 QTHLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLV-CGPYNIPYLINLPGSGNRVKGELYS-VSTQGLAR 91 (187)
Q Consensus 14 ~~~~lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~-~g~~~yP~l~~~p~~g~~V~GEly~-V~~~~L~~ 91 (187)
.|..+|||||||.++.||.++. .+..++.|++ .+|.++ +...+||+|++ ++++.|.|+||. |+++.|+.
T Consensus 16 ~~~~vFvYGSL~~~~~~~~~l~------~~~~~~~A~l-~Gy~l~~~~~~~yP~lv~--~~g~~V~G~v~~~v~~~~l~~ 86 (173)
T 2g0q_A 16 QLHNVFVYGSFQDPDVINVMLD------RTPEIVSATL-PGFQRFRLKGRLYPCIVP--SEKGEVHGKVLMGVTSDELEN 86 (173)
T ss_dssp SSEEEEECSGGGCHHHHHHHTS------SCCEEEEEEE-ETCEECCCCSSSCCCEEC--CTTCEEEEEEEEEECHHHHHH
T ss_pred CCEEEEEEcCCCCCccCHHHhc------CCCceeEEEE-cCeEEEeeCCCeeeEEEE--CCCCEEEEEEEEEcCHHHHHH
Confidence 5789999999999999987763 3455678876 567776 32236899986 456899999985 99999999
Q ss_pred hhcccCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecCCCCCcch--------hhhcCCcceeccccccCcc
Q 029832 92 LDELEGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFANRSFGEGL--------WEKKGKVGMNEYTEYDGQE 163 (187)
Q Consensus 92 LD~~Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~~~~~~~l--------~~~~~~~~~~~Y~~~~~~~ 163 (187)
||++|+ +.|+|+.++|.+.+ .| +.+. ||+|++++...+.. |.+. ..+.|. ...+.
T Consensus 87 LD~~Eg---~~Y~R~~v~V~~~d-g~----~~v~-----A~vYv~~~~~~~~~~~~~~~~~W~~~---~~~~~~-~~~~~ 149 (173)
T 2g0q_A 87 LDAVEG---NEYERVTVGIVRED-NS----EKMA-----VKTYMWINKADPDMFGEWNFEEWKRL---HKKKFI-ETFKK 149 (173)
T ss_dssp HHHHHT---TTEEEEEEEEEESS-SS----CEEE-----EEEEEESCSSCSSSCCCCHHHHHHHH---HHHHHH-HHHHH
T ss_pred HHHHhh---cCCEEEEEEEEECC-CC----eEEE-----EEEEEEcCccccccCCCcCHHHHHHH---hHHHHH-HHHHH
Confidence 999999 48999999999875 23 4566 99999876543222 3211 122233 34667
Q ss_pred ccccccCCCCccHHHHHHHhhcCC
Q 029832 164 YVAIDKRAKGVCIVEEIASFLSSD 187 (187)
Q Consensus 164 Y~~r~~r~~~~~~~~~~~~~~~~~ 187 (187)
|+.+.+||++.||+| |+.|++++
T Consensus 150 ~m~~~~~p~~~~~~~-~~~~~~~~ 172 (173)
T 2g0q_A 150 IMECKKKPQGQGNDD-ISHVLRED 172 (173)
T ss_dssp HHHHHTCCC---------------
T ss_pred HHHhccCCCCCcHHH-HHHHHhcC
Confidence 899999999999999 99999874
No 4
>2jqv_A AT3G28950, AIG2 protein-like; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana}
Probab=99.92 E-value=2.1e-25 Score=176.77 Aligned_cols=148 Identities=21% Similarity=0.338 Sum_probs=113.3
Q ss_pred CcceEEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEEEC-CCCCeEEEecCCCCceEEEEEEE-EChhhhHH
Q 029832 14 QTHLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLVCG-PYNIPYLINLPGSGNRVKGELYS-VSTQGLAR 91 (187)
Q Consensus 14 ~~~~lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~~g-~~~yP~l~~~p~~g~~V~GEly~-V~~~~L~~ 91 (187)
.+.+||||||||.++.||.++ +.+..++.|++ .+|.++.. ..+||+|++ ++++.|.|+||. |+++.|+.
T Consensus 7 ~~~~vFvYGSL~~~~~~~~~~------~~~~~~~~a~l-~Gy~~~~~~~~~yP~lv~--~~~~~V~G~v~~~v~~~~l~~ 77 (165)
T 2jqv_A 7 QSHNVFVYGSILEPAVAAVIL------DRTADTVPAVL-HGYHRYKLKGLPYPCIVS--SDSGKVNGKVITGVSDAELNN 77 (165)
T ss_dssp SCEEEEESSTTSSHHHHHHHT------SSCCEEEEEEE-ETCEECCCTTSSSCCEES--CCSSEEEEEEEEEECHHHHHH
T ss_pred CceEEEEEcCCCCchhhHHHh------CCCCccceEEE-eCeEEEecCCCCCCEEEE--CCCCEEEEEEEEeCCHHHHHH
Confidence 468999999999999988766 34567778875 56777632 227899986 456799999996 99999999
Q ss_pred hhcccCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecCCCCCcchhhhcCCcceecccc-------ccCccc
Q 029832 92 LDELEGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFANRSFGEGLWEKKGKVGMNEYTE-------YDGQEY 164 (187)
Q Consensus 92 LD~~Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~~~~~~~l~~~~~~~~~~~Y~~-------~~~~~Y 164 (187)
||++|+ +.|+|+.++|.+.+ |. +.++ ||+|++++...+-+ .+.+.+++|.. ..+..|
T Consensus 78 LD~~E~---~~Y~R~~v~v~~~d--g~---~~~~-----a~vYv~~~~~~~i~---~G~W~~~~~~~~~~~~~~~~t~~~ 141 (165)
T 2jqv_A 78 FDVIEG---NDYERVTVEVVRMD--NS---EKVK-----VETYVWVNKDDPRM---YGEWDFEEWRVVHAEKFVETFRKM 141 (165)
T ss_dssp HHHTTT---TSEEEEEEEEEETT--TT---EEEE-----EEEEEETTTTSCCS---CSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcc---CCcEEEEEEEEECC--CC---eEEE-----EEEEEECCCccccc---CCCcCHHHHHHHHHHHHHHHHHHH
Confidence 999998 58999999999875 40 2245 99999876544312 23344444443 345577
Q ss_pred cccccCCCCccHHHHHHHhhcC
Q 029832 165 VAIDKRAKGVCIVEEIASFLSS 186 (187)
Q Consensus 165 ~~r~~r~~~~~~~~~~~~~~~~ 186 (187)
.....||++++|+++|+.|+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~ 163 (165)
T 2jqv_A 142 LEWNKNPNGKSMEEAVGSLLSS 163 (165)
T ss_dssp HHHHHCSSCCCHHHHSCCCCCC
T ss_pred HHhccCCCccchhhHHHhhhhC
Confidence 7889999999999999999987
No 5
>1xhs_A Hypothetical UPF0131 protein YTFP; structure, autostructure, northeast structural genomics consortium, NESG, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.269.1.1
Probab=99.90 E-value=4.6e-24 Score=161.85 Aligned_cols=94 Identities=36% Similarity=0.549 Sum_probs=79.6
Q ss_pred eEEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEE-ECCCCCeEEEecCCCCceEEEEEEEEChhhhHHhhcc
Q 029832 17 LIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLV-CGPYNIPYLINLPGSGNRVKGELYSVSTQGLARLDEL 95 (187)
Q Consensus 17 ~lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~-~g~~~yP~l~~~p~~g~~V~GEly~V~~~~L~~LD~~ 95 (187)
+||||||||+|++||++|. .++++|.++ ..+|+|+ +| +||+|++ +.| .|.||||+|+++.|+.||+|
T Consensus 2 ~vFvYGTL~~g~~~~~~l~------~a~~~g~a~-l~gy~L~~~g--~yP~lv~--~~g-~V~Gevy~v~~~~l~~LD~~ 69 (121)
T 1xhs_A 2 RIFVYGSLRHKQGNSHWMT------NAQLLGDFS-IDNYQLYSLG--HYPGAVP--GNG-TVHGEVYRIDNATLAELDAL 69 (121)
T ss_dssp EEEECSCTTCCCTTTHHHH------TCEEEEEEE-EEEEEEEECS--SSEEEEE--EEE-EEEEEEEECCHHHHHHHHHH
T ss_pred EEEEECCCCCcccchhhcC------CCcEEEEEE-EeCcEEEEec--CCCeEEe--cCC-EEEEEEEEeCHHHHHHHHHh
Confidence 6999999999999999883 478999866 4789999 67 6899996 445 99999999999999999999
Q ss_pred cCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecCCC
Q 029832 96 EGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFANRS 139 (187)
Q Consensus 96 Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~~~ 139 (187)
|++| ++|+|+.|++ .+ | + ||+|++++.
T Consensus 70 Eg~~-~~Y~R~~v~~--~~--g-------~-----a~vY~~~~~ 96 (121)
T 1xhs_A 70 RTRG-GEYARQLIQT--PY--G-------S-----AWMYVYQRP 96 (121)
T ss_dssp HSTT-SCEEEEEEEE--TT--E-------E-----EEEEEECSC
T ss_pred cCCC-CCEEEEEEEc--CC--C-------E-----EEEEEECCc
Confidence 9997 8999999884 32 2 3 999998654
No 6
>1v30_A Hypothetical UPF0131 protein PH0828; alpha+beta, structural genomics, unknown function; HET: NHE; 1.40A {Pyrococcus horikoshii} SCOP: d.269.1.1
Probab=99.89 E-value=2.3e-23 Score=158.76 Aligned_cols=96 Identities=29% Similarity=0.482 Sum_probs=78.9
Q ss_pred CcceEEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEEECCCCCeEEEecCCCCceEEEEEEEEChhhhHHhh
Q 029832 14 QTHLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLVCGPYNIPYLINLPGSGNRVKGELYSVSTQGLARLD 93 (187)
Q Consensus 14 ~~~~lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~~g~~~yP~l~~~p~~g~~V~GEly~V~~~~L~~LD 93 (187)
.+.+||||||||+|++||.++ .+++++|.+++. +|+|++|. ||+|++ +.|. |.||||+|+++.|+.||
T Consensus 6 ~~~~vFVYGTL~~g~~n~~~l------~~a~~~g~a~l~-gy~L~~g~--yP~lv~--~~g~-V~Gev~~v~~~~l~~LD 73 (124)
T 1v30_A 6 KSVRIAVYGTLRKGKPLHWYL------KGAKFLGEDWIE-GYQLYFEY--LPYAVK--GKGK-LKVEVYEVDKETFERIN 73 (124)
T ss_dssp -CEEEEECSTTSTTSTTGGGG------TTSEEEEEEEEE-EEEEEESS--SEEEEE--EEEE-EEEEEEEECHHHHHHHT
T ss_pred CccEEEEECCCCCchHhHHhc------CCCcEEEEEEEe-eEEEEECC--CCEEEe--cCCE-EEEEEEEECHHHHHHhh
Confidence 367899999999999999987 458999999875 88999764 899996 4444 99999999999999999
Q ss_pred cccCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecCCC
Q 029832 94 ELEGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFANRS 139 (187)
Q Consensus 94 ~~Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~~~ 139 (187)
+|| +| +.|+|+.|. +.+ | + ||+|++++.
T Consensus 74 ~~E-~~-~~Y~R~~V~--~~~--g-------~-----A~vY~~~~~ 101 (124)
T 1v30_A 74 EIE-IG-TGYRLVEVS--TKF--G-------K-----AFLWEWGSK 101 (124)
T ss_dssp TCG-GG-GGEEEEEEC--CTT--S-------C-----EEEEEECSC
T ss_pred hcc-CC-CCeEEEEEE--cCC--C-------E-----EEEEEeCCc
Confidence 999 75 799999743 332 4 1 999988644
No 7
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=99.88 E-value=1.1e-22 Score=173.74 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=82.0
Q ss_pred cceEEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEE-ECCCCCeEEEecCCCCceEEEEEEEEChhhhHHhh
Q 029832 15 THLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLV-CGPYNIPYLINLPGSGNRVKGELYSVSTQGLARLD 93 (187)
Q Consensus 15 ~~~lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~-~g~~~yP~l~~~p~~g~~V~GEly~V~~~~L~~LD 93 (187)
|.+||||||||+|++||++| .++++++.+.+.. ++|+ +|. ||+|+..|++++.|.||||+|+++ .||
T Consensus 2 ~~~vFVYGTL~~g~~n~~~l------~~~~~~~~~~~~~-g~L~~~g~--~P~lv~~~~~~~~V~Gev~~v~~~---~LD 69 (285)
T 2qik_A 2 NSLLFVYGTLRKHEKNHHLL------AQSACINEQARTK-GSLFAAKE--GPTVVFNDEDEGYIYGEVYEADEL---CIH 69 (285)
T ss_dssp CEEEEECSTTSTTSTTGGGG------TTCEEEEEEEEEE-SEEEEC----CEEEECCTTCCSEEEEEEEEECHH---HHH
T ss_pred CcEEEEECCCCCCCcChHHh------CCCeEeeeeEEEE-EEEEEcCC--CCeEEEccCCCCEEEEEEEEcCHH---HhH
Confidence 57899999999999999987 4578888766554 5888 674 599998766788999999999986 999
Q ss_pred cccCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecCCCCC
Q 029832 94 ELEGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFANRSFG 141 (187)
Q Consensus 94 ~~Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~~~~~ 141 (187)
+|||+| ++|+|+.++|.+.+ | .++ ||||++++...
T Consensus 70 ~~E~~~-~~Y~R~~v~v~~~~--g-----~~~-----a~vY~~~~~~~ 104 (285)
T 2qik_A 70 KLDQFF-QGYHKQTVFVETDV--G-----IKI-----ALIYFMNKDGC 104 (285)
T ss_dssp HHHHHS-TTCEEEEEEEEETT--E-----EEE-----EEEEECC----
T ss_pred HhcCCC-CceeEEEEEEEcCC--C-----EEE-----EEEEEeccccc
Confidence 999997 89999999999874 4 456 99999876543
No 8
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=99.72 E-value=7e-18 Score=135.89 Aligned_cols=106 Identities=19% Similarity=0.345 Sum_probs=83.1
Q ss_pred cCcceEEEEcCCCCCCCChHHHhhhhccCccEEeceeEecCceeEEE--C--C------CCCeEEEecCCCCceEEEEEE
Q 029832 13 QQTHLIFSYGTLKRGFPNHYLMQQLMDQNAAVFLGPYCTHESYPLVC--G--P------YNIPYLINLPGSGNRVKGELY 82 (187)
Q Consensus 13 ~~~~~lFVYGTL~~G~~nh~~l~~~~~~~~a~~vg~a~t~~~y~L~~--g--~------~~yP~l~~~p~~g~~V~GEly 82 (187)
+...++|+|||||.. ..|... ...+++++.|++ .+|+|.+ . + -++|.+++ +.|+.|.|+||
T Consensus 14 ~~~~~~FaYGSlm~~----~~~~~~--~~~~~~~~~a~l-~gy~l~f~~~~~~~~~~~~g~~~~lv~--~~g~~V~G~ly 84 (188)
T 3cry_A 14 EESFLYFAYGSNLLT----ERIHLR--NPSAAFFCVARL-QDFKLDFGNSQGKTSQTWHGGIATIFQ--SPGDEVWGVVW 84 (188)
T ss_dssp CCEEEEEECSGGGSH----HHHHHH--CTTCEEEEEEEE-EEEEEEEEEETTCCCTTTSSCEEEEEE--EEEEEEEEEEE
T ss_pred CCCEEEEEEccCCCH----HHHHhh--CCCCceEEEEEE-cCEEEEECCCCCCCcCCCCCeeEeEEe--CCCCEEEEEEE
Confidence 456789999999954 333332 366788998885 6788853 2 1 15788876 45789999999
Q ss_pred EEChhhhHHhhcccCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecCC
Q 029832 83 SVSTQGLARLDELEGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFANR 138 (187)
Q Consensus 83 ~V~~~~L~~LD~~Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~~ 138 (187)
+|+++.|+.||++|+++.+.|+|+.++|...+ | +.++ ||+|++++
T Consensus 85 ~v~~~~l~~LD~~Eg~~~g~Y~r~~v~V~~~~--g----~~~~-----a~vYv~~~ 129 (188)
T 3cry_A 85 KMNKSNLNSLDEQQGVKSGMYVVIEVKVATQE--G----KEIT-----CRSYLMTN 129 (188)
T ss_dssp EEEGGGHHHHHHHTTGGGTSCEEEEEEEEETT--C----CEEE-----EEEEECSS
T ss_pred EECHHHHHHHHHHhCCCCCcEEEEEEEEEeCC--C----CEEE-----EEEEEecC
Confidence 99999999999999987568999999999874 6 5676 99999864
No 9
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=99.33 E-value=6.1e-12 Score=107.19 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=80.0
Q ss_pred cceEEEEcCCCCCCCChHHHhhhhccCcc--EEeceeEecCceeEEE-C---CCCCeEEEecCCCCceEEEEEEEEChhh
Q 029832 15 THLIFSYGTLKRGFPNHYLMQQLMDQNAA--VFLGPYCTHESYPLVC-G---PYNIPYLINLPGSGNRVKGELYSVSTQG 88 (187)
Q Consensus 15 ~~~lFVYGTL~~G~~nh~~l~~~~~~~~a--~~vg~a~t~~~y~L~~-g---~~~yP~l~~~p~~g~~V~GEly~V~~~~ 88 (187)
+..+|.|||||. ...|... ....+ +.++.|++ .+|.+.. + .-++|.|++ . |+.|.|.+|+|+++.
T Consensus 127 ~~~yFaYGSnm~----~~~~~~~-~~p~~~~~~~~~a~L-~G~~l~F~~~~~~~g~a~iv~--~-g~~v~Gvly~i~~~~ 197 (285)
T 2qik_A 127 PIYYFAYGSCMD----NARFQKA-GVDHYFQDPVGRAVL-KGYTTRFTLKREDGSRADMLE--D-GGTTEGVLYRIPYSA 197 (285)
T ss_dssp SEEEEECSGGGS----SHHHHHH-TCGGGSSCEEEEEEE-ETCEEEEEEEETTEEEEEEEC--S-SCEEEEEEEEECGGG
T ss_pred cEEEEEechhcC----Hhhcccc-cCCcccceEeEEEEE-eCeEEEcCcCCCCCeeeeEEE--C-CCEEEEEEEEECHHH
Confidence 578999999994 4445431 12445 67778875 6677753 2 125788875 5 789999999999999
Q ss_pred hHHhhcccCCCCCCeeEEEEEEEeCCCCCCCCCceeeccccEEEEEecCCC
Q 029832 89 LARLDELEGTWFGHYERLPIRLIEGGREGNDGNGAVSVAAVEAEGYFANRS 139 (187)
Q Consensus 89 L~~LD~~Eg~~~~~Y~R~~v~V~~~~~~G~~~~~~v~~~~~~A~vY~~~~~ 139 (187)
|+.||++|+.+.+.|.|+.++|...+ | +.++ ||+|++++.
T Consensus 198 l~~LD~~Eg~~~g~Y~r~~v~v~~~~--g----~~~~-----a~~Yv~~~~ 237 (285)
T 2qik_A 198 LSYLYKREGVESLTYRPAFVDVEAGG--R----HYKD-----CLTFLVLQK 237 (285)
T ss_dssp HHHHHHHTTTTTTSEEEEEEEEEETT--E----EEEE-----EEEEEESSC
T ss_pred HHHHHHhhCCCCCceEEEEEEEEECC--C----CEEE-----EEEEEecCC
Confidence 99999999986678999999999874 5 5666 999998754
No 10
>3gqh_A Preneck appendage protein; beta barrel, viral protein; 1.80A {Bacillus phage PHI29} PDB: 3gqk_A*
Probab=10.26 E-value=1.7e+02 Score=22.48 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=17.9
Q ss_pred EEEEecCCCCCcchhhhcCCcceeccccccCccccccccCCC
Q 029832 131 AEGYFANRSFGEGLWEKKGKVGMNEYTEYDGQEYVAIDKRAK 172 (187)
Q Consensus 131 A~vY~~~~~~~~~l~~~~~~~~~~~Y~~~~~~~Y~~r~~r~~ 172 (187)
.-....||.|.|.. .|++|.+||+
T Consensus 80 ~~~P~~NP~ydp~~------------------~Y~~R~eR~E 103 (163)
T 3gqh_A 80 FKRPLPNPDFDPNK------------------NYIPRSQRRE 103 (163)
T ss_dssp EEEECBCTTCCSSS------------------CCCCGGGCTT
T ss_pred EeecccCCCCCccc------------------CccccccCCC
Confidence 45667887776665 6888988886
Done!