Query         029833
Match_columns 187
No_of_seqs    105 out of 305
Neff          6.5 
Searched_HMMs 46136
Date          Fri Mar 29 04:22:54 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029833hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF05875 Ceramidase:  Ceramidas 100.0 6.9E-46 1.5E-50  314.9  14.5  180    1-180    64-262 (262)
  2 KOG2329 Alkaline ceramidase [L 100.0 1.9E-35 4.1E-40  250.2   7.8  184    1-186    72-271 (276)
  3 PRK15087 hemolysin; Provisiona  97.1   0.017 3.7E-07   48.2  12.6  136    5-155    66-212 (219)
  4 TIGR01065 hlyIII channel prote  96.1    0.13 2.9E-06   42.2  11.6  135    5-152    51-197 (204)
  5 PF03006 HlyIII:  Haemolysin-II  95.8    0.11 2.4E-06   42.2   9.8  144    5-150    56-220 (222)
  6 PF12036 DUF3522:  Protein of u  92.9    0.27 5.9E-06   40.1   5.7   22    4-25     41-63  (186)
  7 COG1272 Predicted membrane pro  92.0       1 2.3E-05   38.0   8.2  136    5-153    70-217 (226)
  8 PF08255 Leader_Trp:  Trp-opero  90.2    0.02 4.4E-07   27.5  -2.1    9  134-142     5-13  (14)
  9 PF04080 Per1:  Per1-like ;  In  83.0      30 0.00065   29.9  12.9   45  105-155   218-262 (267)
 10 PF13965 SID-1_RNA_chan:  dsRNA  79.9      36 0.00077   32.6  12.0   39    3-41    326-364 (570)
 11 KOG2970 Predicted membrane pro  61.9      96  0.0021   27.5   9.6   75   74-156   232-307 (319)
 12 PF03203 MerC:  MerC mercury re  56.0      81  0.0018   23.3   9.8   83   21-115     1-83  (116)
 13 KOG4243 Macrophage maturation-  44.8      13 0.00028   31.9   1.5   34  105-148   244-277 (298)
 14 PF12491 ApoB100_C:  Apolipopro  41.8      14  0.0003   24.6   1.0   17    9-25     34-50  (58)
 15 PF05019 Coq4:  Coenzyme Q (ubi  32.0      22 0.00048   29.7   1.0   44  107-150    83-139 (222)
 16 KOG0748 Predicted membrane pro  25.1 4.6E+02  0.0099   22.8  13.4   48  104-157   215-268 (286)
 17 PF00599 Flu_M2:  Influenza Mat  24.7 1.3E+02  0.0028   21.8   3.6   23  101-123    25-47  (97)
 18 COG5237 PER1 Predicted membran  23.7   2E+02  0.0043   25.2   5.2   20  133-152   284-303 (319)
 19 PF08720 Hema_stalk:  Influenza  23.2      17 0.00036   28.1  -1.1   13  114-126   135-147 (175)
 20 cd07588 BAR_Amphiphysin The Bi  22.4      58  0.0013   27.1   1.8   19   16-34    158-176 (211)
 21 cd07611 BAR_Amphiphysin_I_II T  22.4      54  0.0012   27.4   1.6   19   16-34    158-176 (211)
 22 TIGR00869 sec62 protein transl  22.1      81  0.0018   26.8   2.6   64   61-130   134-199 (232)

No 1  
>PF05875 Ceramidase:  Ceramidase;  InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=100.00  E-value=6.9e-46  Score=314.90  Aligned_cols=180  Identities=33%  Similarity=0.569  Sum_probs=157.9

Q ss_pred             CeeehhHHHHHHhhhhhhhhhcchhHHHHHHHHHHHHhccCc---cccchhHHHHHHHhhHhheeeeccccchhHHHHHH
Q 029833            1 MILAIGSMLYHATLQHMQQQGDETPMVWEMLLYIYILYSPDW---HYKSTMPTFLFLYGAAFAVAHALFRFGIGFKVHYA   77 (187)
Q Consensus         1 ~~VGiGS~~FHaTL~~~~QllDElpMl~~~~~~~y~~~~~~~---~~~~~l~~~l~~~~~~~t~~~~~~~~~~~h~v~f~   77 (187)
                      ++||+||++|||||++++|++||+||+|++++++|.++..+.   ..+..++..+..+++++++.+...++|..||++|+
T Consensus        64 ~~VGiGS~~FHaTl~~~~ql~DelPMl~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~t~~~~~~~~p~~~~~~f~  143 (262)
T PF05875_consen   64 ALVGIGSFLFHATLSYWTQLLDELPMLWATLLFLYIVLTRRYSSPRYRLALPLLLFIYAVVVTVLYFVLDNPVFHQIAFA  143 (262)
T ss_pred             HHHHHhHHHHHhChhhhHHHhhhhhHHHHHHHHHHHHhcccccCchhhHHHHHHHHHHHHHHHHHHhhhccchhhhhhHH
Confidence            368999999999999999999999999999999999987644   34556778888888899999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhc-----cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhc--------ccchhhhHHHHHH
Q 029833           78 VLCLLCIPRMYKYYIH-----TTDVPAKRLAKLYLATITVGSLCWLCDRLFCEKISLWY--------FNPQGHALWHTFM  144 (187)
Q Consensus        78 ~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~f~~g~~~W~~D~~~C~~l~~~~--------~~~elH~wWHilt  144 (187)
                      .+.+.++.++.....+     .++++.+|+.+.|+++|++|+++|++||.+|+.++.+|        +++|+||||||+|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt  223 (262)
T PF05875_consen  144 SLVLLVILRSIYLIRRRVRDACRRRRARRLLLFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILT  223 (262)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhhchHHHHHHHHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHH
Confidence            9999999998765444     45667889999999999999999999999999999876        4689999999999


Q ss_pred             HhHHHHHHHHHHHHHhhcc--CCcceeee-eeccceEEE
Q 029833          145 GFNSYFANTFLMFCRAQQR--GWNPKVVH-AMGWLPYVK  180 (187)
Q Consensus       145 gig~Y~~~~~~~~~~~~~~--~~~~~~~~-~~g~~P~v~  180 (187)
                      |+|+|+.+++.+|+|..++  +.+++++| ..+.+|||+
T Consensus       224 ~ig~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~v~  262 (262)
T PF05875_consen  224 GIGAYLLIVFVAYLRALYEGPEPKPKLKWPPWGGLPYVK  262 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCCceeC
Confidence            9999999999999997766  55677777 456669985


No 2  
>KOG2329 consensus Alkaline ceramidase [Lipid transport and metabolism]
Probab=100.00  E-value=1.9e-35  Score=250.18  Aligned_cols=184  Identities=27%  Similarity=0.326  Sum_probs=148.4

Q ss_pred             CeeehhHHHHHHhhhhhhhhhcchhHHHHHHHHHHHH--hccCcc----ccchhHHHHHHHhhHhheeeeccccchhHHH
Q 029833            1 MILAIGSMLYHATLQHMQQQGDETPMVWEMLLYIYIL--YSPDWH----YKSTMPTFLFLYGAAFAVAHALFRFGIGFKV   74 (187)
Q Consensus         1 ~~VGiGS~~FHaTL~~~~QllDElpMl~~~~~~~y~~--~~~~~~----~~~~l~~~l~~~~~~~t~~~~~~~~~~~h~v   74 (187)
                      ++||+||++|||||+|.+|++||+||+|  ++.++..  +.|+..    .++.......+.++++|+.++..++|..||+
T Consensus        72 ~ivgl~S~~fH~TL~~~~QllDElamiw--~i~~~~~~cy~p~~~~~~~~~~~~tF~~~~~~~avt~~~l~~~~p~~n~v  149 (276)
T KOG2329|consen   72 TIVGLGSMYFHMTLVYKGQLLDELAMIW--EIPLVSLLCYFPKFLVKETFSKRLTFILVLLILAVTIVGLSFLEPIVNAV  149 (276)
T ss_pred             HHHHHHHhhhhhhHHHhheehhhhhHHH--HHHHHHHhhcchhhhccccccchhHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            4799999999999999999999999999  2222332  334322    2233334466667788889999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhcc--------cchhhhHHHHHHHh
Q 029833           75 HYAVLCLLCIPRMYKYYIHTTDVPAKRLAKLYLATITVGSLCWLCDRLFCEKISLWYF--------NPQGHALWHTFMGF  146 (187)
Q Consensus        75 ~f~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~g~~~W~~D~~~C~~l~~~~~--------~~elH~wWHiltgi  146 (187)
                      +++.+.+.+.+.++.++.+..+++.|.+...+.+.++.|+.+|..||.+|++|+++|.        .+++|||||++|++
T Consensus       150 ~~~~~s~~v~v~~~~~~~~~~~~~~r~l~~~~~i~~~v~~~~w~~D~~~c~f~~~~~~~l~~~~gi~l~~~a~Whv~s~~  229 (276)
T KOG2329|consen  150 ALGFFSLPVAVVSMYEYYIHVNDAKRNLGATGVILWLVGFIFWFLDRLLCSFWLRLRRYLALPLGILLELHAWWHVLTSI  229 (276)
T ss_pred             HHHHHHHHHHHHhhhhheeeccHhHhccCceeeeehhhhcchhhhhHHHHHHHHHhhhhhccHHHHHHHHHHHHhheecC
Confidence            9999999999998876666656554545555788999999999999999999999883        26899999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCcceee--eeeccceEEEecCCCC
Q 029833          147 NSYFANTFLMFCRAQQRGWNPKVV--HAMGWLPYVKIDKPKV  186 (187)
Q Consensus       147 g~Y~~~~~~~~~~~~~~~~~~~~~--~~~g~~P~v~~~~~~~  186 (187)
                      +.|...++..++|..+.+.+++.+  |.+|.+|++..++.+.
T Consensus       230 ~~y~~~~~~~~~~~~~~~~~~~~~f~w~~g~~p~~l~~~~~~  271 (276)
T KOG2329|consen  230 GSYRTITFLLYDRVLYLPGEPKVKFYWPWGSLPERLHEKLKT  271 (276)
T ss_pred             ChhHHHHHHHHhHHhccCCCCCeEEEeecCCcceeeeccccC
Confidence            999999999999999887777665  5568889999887665


No 3  
>PRK15087 hemolysin; Provisional
Probab=97.06  E-value=0.017  Score=48.19  Aligned_cols=136  Identities=19%  Similarity=0.266  Sum_probs=73.8

Q ss_pred             hhHHHHHHhh----hhhhhhhcchhHHHHHHHH----HHHHhccCccccchhHHHH---HHHhhHhheeeeccccchhHH
Q 029833            5 IGSMLYHATL----QHMQQQGDETPMVWEMLLY----IYILYSPDWHYKSTMPTFL---FLYGAAFAVAHALFRFGIGFK   73 (187)
Q Consensus         5 iGS~~FHaTL----~~~~QllDElpMl~~~~~~----~y~~~~~~~~~~~~l~~~l---~~~~~~~t~~~~~~~~~~~h~   73 (187)
                      ..|+.||...    +...+-+|-..|-...+.-    ++..+...+  ...+....   ++.++.... ...-++..+-.
T Consensus        66 ~~StlYH~~~~~~~~~~~~rlDh~~I~llIaGsytP~~~~~~~~~~--~~~l~~~iW~~a~~Gi~~~~-~~~~~~r~l~~  142 (219)
T PRK15087         66 LASTLYHAIPHQRAKRWLKKFDHCAIYLLIAGTYTPFLLVGLDSPL--ARGLMIVIWSLALLGILFKL-AFAHRFKVLSL  142 (219)
T ss_pred             HHHHHHHCCCchHHHHHHHHccHHHHHHHHHHhhHHHHHHHccCHH--HHHHHHHHHHHHHHHHHHHH-HhcCCCchHHH
Confidence            3589999654    3556678887655443322    222222211  12222222   222222211 11223334556


Q ss_pred             HHHHHHHHHHHhhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhcccchhhhHHHHHHHhHHHHHHH
Q 029833           74 VHYAVLCLLCIPRMYKYYIHTTDVPAKRLAKLYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYFANT  153 (187)
Q Consensus        74 v~f~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~g~~~W~~D~~~C~~l~~~~~~~elH~wWHiltgig~Y~~~~  153 (187)
                      ..|.++....+.... ...+..++..-.+...|.+.+..|..+-..||           .||-|.+||+++-.|+.....
T Consensus       143 ~~Yl~mGw~~v~~~~-~l~~~~~~~~l~~l~~GG~~Y~~G~~fY~~~~-----------~p~~H~IwH~fVl~ga~~H~~  210 (219)
T PRK15087        143 VTYLAMGWLSLIVIY-QLAIKLAIGGVTLLAVGGVVYSLGVIFYVCKR-----------IPYNHAIWHGFVLGGSVCHFL  210 (219)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHhHHHHhhHHHHccCC-----------CCCchhHHHHHHHHHHHHHHH
Confidence            678888877666553 23333233333444566677777777666553           357899999999999987655


Q ss_pred             HH
Q 029833          154 FL  155 (187)
Q Consensus       154 ~~  155 (187)
                      .+
T Consensus       211 ai  212 (219)
T PRK15087        211 AI  212 (219)
T ss_pred             HH
Confidence            44


No 4  
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=96.09  E-value=0.13  Score=42.20  Aligned_cols=135  Identities=17%  Similarity=0.079  Sum_probs=66.9

Q ss_pred             hhHHHHHHhh-----hhhhhhhcchhHHHHHHHH----HHHHhccCccccchhHHH---HHHHhhHhheeeeccccchhH
Q 029833            5 IGSMLYHATL-----QHMQQQGDETPMVWEMLLY----IYILYSPDWHYKSTMPTF---LFLYGAAFAVAHALFRFGIGF   72 (187)
Q Consensus         5 iGS~~FHaTL-----~~~~QllDElpMl~~~~~~----~y~~~~~~~~~~~~l~~~---l~~~~~~~t~~~~~~~~~~~h   72 (187)
                      ..|+.||...     +...|-+|-..|-.....-    +|..+.+.+  +..+...   ++..+...... ...++..+-
T Consensus        51 ~~St~yH~~~~s~~~~~~~~rlD~~gI~~lIaGsytP~~~~~~~~~~--~~~~~~~iw~la~~gi~~~~~-~~~~~r~~r  127 (204)
T TIGR01065        51 LVSTLYHSIPKGSKAKNWLRKIDHSMIYVLIAGTYTPFLLLALPGPL--GWTVLWIIWGLAIGGIIYKLF-FHKRPRWLS  127 (204)
T ss_pred             HHHHHHHCCcCchhHHHHHHHccHHHHHHHHHHhhHHHHHHHcCCcH--HHHHHHHHHHHHHHHHHHHHH-ccCCCchhH
Confidence            4689999655     2355677886654443322    233333222  1112111   22222211111 122223345


Q ss_pred             HHHHHHHHHHHHhhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhcccchhhhHHHHHHHhHHHHHH
Q 029833           73 KVHYAVLCLLCIPRMYKYYIHTTDVPAKRLAKLYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYFAN  152 (187)
Q Consensus        73 ~v~f~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~g~~~W~~D~~~C~~l~~~~~~~elH~wWHiltgig~Y~~~  152 (187)
                      ...|.++....+.... ...+..++..-.....+.+.+..|..+...|.       +-|+.+  |.+||+++-.|+....
T Consensus       128 ~~~y~~~G~~~v~~~~-~~~~~~~~~~~~~l~~gg~~Y~~G~~fY~~~~-------p~~~~~--H~iwH~fV~~g~~~h~  197 (204)
T TIGR01065       128 LFLYLIMGWLVVLVIK-PLYHNLPGAGFSLLAAGGLLYTVGAIFYALKW-------PIPFTY--HAIWHLFVLGASACHF  197 (204)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHhHHHHcchHheeecC-------CCCCCc--ChHHHHHHHHHHHHHH
Confidence            5677777755544321 12222232233344456677888877766653       111113  9999999999987653


No 5  
>PF03006 HlyIII:  Haemolysin-III related;  InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=95.78  E-value=0.11  Score=42.23  Aligned_cols=144  Identities=16%  Similarity=0.118  Sum_probs=74.2

Q ss_pred             hhHHHHHH-------hhhhhhhhhcchhHHHHHHHH----HHHHhccCccccchhHH---HHHHHhhHhheeeec--ccc
Q 029833            5 IGSMLYHA-------TLQHMQQQGDETPMVWEMLLY----IYILYSPDWHYKSTMPT---FLFLYGAAFAVAHAL--FRF   68 (187)
Q Consensus         5 iGS~~FHa-------TL~~~~QllDElpMl~~~~~~----~y~~~~~~~~~~~~l~~---~l~~~~~~~t~~~~~--~~~   68 (187)
                      ++|+.||.       ..+...|.+|=..+.......    +|..+..+...+.....   .+++.+.........  -+.
T Consensus        56 ~~St~yH~f~~~s~~~~~~~~~~lD~~gI~l~i~gs~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  135 (222)
T PF03006_consen   56 LCSTLYHLFSCHSEGKVYHIFLRLDYAGIFLLIAGSYTPFIYYGFYCHPWLGWFYLAFIWILALIGIVLSLFPCFSSPRF  135 (222)
T ss_pred             HhHHHhhCCCcCCcHHHHHHHHhcchhhhhHhHhhhhhhHHHhhccccchHHHHHHHHHHHHHHHhHHhhcchhhcCCcc
Confidence            57999998       456667788887766554433    23333222212222221   222222222222221  122


Q ss_pred             chhHHHHHHHHHHHHHhhhhhhhh--c-cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhc--ccchhhhHHHHH
Q 029833           69 GIGFKVHYAVLCLLCIPRMYKYYI--H-TTDVPAKRLAKLYLATITVGSLCWLCDRLFCEKISLWY--FNPQGHALWHTF  143 (187)
Q Consensus        69 ~~~h~v~f~~l~~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~f~~g~~~W~~D~~~C~~l~~~~--~~~elH~wWHil  143 (187)
                      ...-...|.++....+.+......  . ..++..-.....+.+++++|-.+-..+-  -|.+.+-+  ...+-|-+||++
T Consensus       136 ~~~r~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~fy~~~~--PEr~~pg~fD~~g~sHqi~Hi~  213 (222)
T PF03006_consen  136 RWLRTIFFLLLGWSGIIPIFHRIFFLGGWGSPDPLWLLILGGVLYLLGAVFYATRI--PERWFPGKFDIWGHSHQIWHIF  213 (222)
T ss_pred             ceeeehHhHHHHHHHHhhhHHHHHHhccccchHHHHHHHHHHHHHHHhHHHhhhcc--ccccCCCCcCCCCccHHHHHHH
Confidence            234446777776666555432111  1 1111114445567888888888877761  11111111  235789999999


Q ss_pred             HHhHHHH
Q 029833          144 MGFNSYF  150 (187)
Q Consensus       144 tgig~Y~  150 (187)
                      +..|+..
T Consensus       214 v~~~~~~  220 (222)
T PF03006_consen  214 VVLAALC  220 (222)
T ss_pred             HHHHHHH
Confidence            9999865


No 6  
>PF12036 DUF3522:  Protein of unknown function (DUF3522);  InterPro: IPR021910  This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length. 
Probab=92.93  E-value=0.27  Score=40.06  Aligned_cols=22  Identities=18%  Similarity=-0.099  Sum_probs=15.0

Q ss_pred             ehhHHHHHHhhhhhhh-hhcchh
Q 029833            4 AIGSMLYHATLQHMQQ-QGDETP   25 (187)
Q Consensus         4 GiGS~~FHaTL~~~~Q-llDElp   25 (187)
                      ++.|+.||+.=+.++| .++|+.
T Consensus        41 m~~S~~YHacd~~~~~~~lc~~~   63 (186)
T PF12036_consen   41 MFFSTFYHACDSGPGEIFLCIMD   63 (186)
T ss_pred             HHHHHhcccccCCCCceEEeech
Confidence            5789999998655554 445544


No 7  
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=92.02  E-value=1  Score=37.95  Aligned_cols=136  Identities=19%  Similarity=0.146  Sum_probs=68.8

Q ss_pred             hhHHHHHHh-----hhhhhhhhcchhHHHHHHHHHHHHh----ccCccccchhHHH---HHHHhhHhheeeeccccchhH
Q 029833            5 IGSMLYHAT-----LQHMQQQGDETPMVWEMLLYIYILY----SPDWHYKSTMPTF---LFLYGAAFAVAHALFRFGIGF   72 (187)
Q Consensus         5 iGS~~FHaT-----L~~~~QllDElpMl~~~~~~~y~~~----~~~~~~~~~l~~~---l~~~~~~~t~~~~~~~~~~~h   72 (187)
                      ..|+.||..     .|...|-+|-..+..+.+. .|.=+    .+.+ ....+...   +++.+...-... .-++..+=
T Consensus        70 ~~St~YH~~~~~~~~k~~~rk~DH~~I~vLIAg-SyTP~~l~~l~~~-~~~~~~~iiW~lal~Gi~~kl~~-~~~~r~ls  146 (226)
T COG1272          70 LVSTLYHSIPNGQKAKAILRKFDHSGIYVLIAG-SYTPFLLVGLYGP-LGWILLGLIWGLALAGILFKLFF-KKRFRKLS  146 (226)
T ss_pred             HHHHHHHcCCCchHHHHHHHHccHHHHHHHHHH-hhHHHhHHHhccc-hHHHHHHHHHHHHHHHHhhhhhc-cCcCceee
Confidence            468889854     4567888998776655443 22211    1222 22322222   222222111111 11222222


Q ss_pred             HHHHHHHHHHHHhhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhcccchhhhHHHHHHHhHHHHHH
Q 029833           73 KVHYAVLCLLCIPRMYKYYIHTTDVPAKRLAKLYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYFAN  152 (187)
Q Consensus        73 ~v~f~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~g~~~W~~D~~~C~~l~~~~~~~elH~wWHiltgig~Y~~~  152 (187)
                      -..|.++...+++... .+.+..++.--.+...|.+.+..|-.+-..|.      .   ..+.-|.+||+++-.|+-...
T Consensus       147 ~~~yl~mGw~~v~~~~-~l~~~l~~~~~~~l~~GGv~YsvG~ifY~~~~------~---~~~~~H~iwH~fVv~ga~~Hf  216 (226)
T COG1272         147 LVLYLAMGWLGLIVIK-PLIAKLGLIGLVLLALGGVLYSVGAIFYVLRI------D---RIPYSHAIWHLFVVGGAACHF  216 (226)
T ss_pred             ehhhHHHHHHHHHHHH-HHHHhCchHHHHHHHHHhHHheeeeEEEEEee------c---cCCchHHHHHHHHHHHHHHHH
Confidence            2456666655555542 23333333222444456666666665544443      1   146889999999999986553


Q ss_pred             H
Q 029833          153 T  153 (187)
Q Consensus       153 ~  153 (187)
                      .
T Consensus       217 ~  217 (226)
T COG1272         217 I  217 (226)
T ss_pred             H
Confidence            3


No 8  
>PF08255 Leader_Trp:  Trp-operon Leader Peptide;  InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=90.23  E-value=0.02  Score=27.53  Aligned_cols=9  Identities=33%  Similarity=0.560  Sum_probs=7.4

Q ss_pred             chhhhHHHH
Q 029833          134 PQGHALWHT  142 (187)
Q Consensus       134 ~elH~wWHi  142 (187)
                      .-+|||||+
T Consensus         5 ~~L~~WWrt   13 (14)
T PF08255_consen    5 FSLHGWWRT   13 (14)
T ss_pred             EEEeeEEEc
Confidence            568999995


No 9  
>PF04080 Per1:  Per1-like ;  InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=82.99  E-value=30  Score=29.92  Aligned_cols=45  Identities=24%  Similarity=0.326  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcchhhhcccchhhhHHHHHHHhHHHHHHHHH
Q 029833          105 LYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYFANTFL  155 (187)
Q Consensus       105 ~~~~~f~~g~~~W~~D~~~C~~l~~~~~~~elH~wWHiltgig~Y~~~~~~  155 (187)
                      .-+++..+|-.+=+.|.      -++-..+--|+.||..|..-+++.-.+.
T Consensus       218 ~~v~~~~lam~LEl~DF------pP~~~~lDAHALWHl~Tip~~~~wy~Fl  262 (267)
T PF04080_consen  218 LFVVLTILAMSLELFDF------PPIFWLLDAHALWHLATIPPTYLWYDFL  262 (267)
T ss_pred             HHHHHHHHHHHHHhhcc------CcccccchHHHHHHHHHhhHHHHHHHHH
Confidence            34556666666655554      1111257789999999998887754433


No 10 
>PF13965 SID-1_RNA_chan:  dsRNA-gated channel SID-1
Probab=79.91  E-value=36  Score=32.60  Aligned_cols=39  Identities=23%  Similarity=0.104  Sum_probs=28.9

Q ss_pred             eehhHHHHHHhhhhhhhhhcchhHHHHHHHHHHHHhccC
Q 029833            3 LAIGSMLYHATLQHMQQQGDETPMVWEMLLYIYILYSPD   41 (187)
Q Consensus         3 VGiGS~~FHaTL~~~~QllDElpMl~~~~~~~y~~~~~~   41 (187)
                      -|+-|+.||-==+..+=.+|---|-+.+......++..|
T Consensus       326 egi~sa~yh~CPn~~~fqfdt~fmyvi~~L~~lkiyq~R  364 (570)
T PF13965_consen  326 EGILSACYHICPNRSNFQFDTSFMYVIAGLCMLKIYQKR  364 (570)
T ss_pred             HHHHHHHhhcCcCchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            488999999888877777898888776665545555433


No 11 
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=61.88  E-value=96  Score=27.52  Aligned_cols=75  Identities=16%  Similarity=0.069  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhccCChhHHHHH-HHHHHHHHHHHHHHhhhhhhhcchhhhcccchhhhHHHHHHHhHHHHHH
Q 029833           74 VHYAVLCLLCIPRMYKYYIHTTDVPAKRLA-KLYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNSYFAN  152 (187)
Q Consensus        74 v~f~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~f~~g~~~W~~D~~~C~~l~~~~~~~elH~wWHiltgig~Y~~~  152 (187)
                      +++|++.........  ..+++-|..+|+. ..-+.++.+|-.+=+.|.      .+.-...--||.||.-|-.-++..-
T Consensus       232 v~~g~iq~vlw~~~~--~~~~~~~s~~~i~~~~i~~~~~LA~sLEi~DF------pPy~~~iDAHALWHlaTIplt~~~~  303 (319)
T KOG2970|consen  232 VAIGVIQLVLWLVWS--FKKRNLPSFWRIWPILIVIFFFLAMSLEIFDF------PPYAWLIDAHALWHLATIPLTILWY  303 (319)
T ss_pred             hhhHHHHHHHHHHHH--HHhhcCcchhhhhHHHHHHHHHHHHHHHhhcC------CchhhhcchHHHHHhhcCccHHHHH
Confidence            445555543333322  3445555455533 233455677777777775      2211346679999999988877765


Q ss_pred             HHHH
Q 029833          153 TFLM  156 (187)
Q Consensus       153 ~~~~  156 (187)
                      -++.
T Consensus       304 ~Fv~  307 (319)
T KOG2970|consen  304 DFVS  307 (319)
T ss_pred             HHhh
Confidence            5554


No 12 
>PF03203 MerC:  MerC mercury resistance protein
Probab=55.95  E-value=81  Score=23.33  Aligned_cols=83  Identities=13%  Similarity=0.070  Sum_probs=42.8

Q ss_pred             hcchhHHHHHHHHHHHHhccCccccchhHHHHHHHhhHhheeeeccccchhHHHHHHHHHHHHHhhhhhhhhccCChhHH
Q 029833           21 GDETPMVWEMLLYIYILYSPDWHYKSTMPTFLFLYGAAFAVAHALFRFGIGFKVHYAVLCLLCIPRMYKYYIHTTDVPAK  100 (187)
Q Consensus        21 lDElpMl~~~~~~~y~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~~~~~~~h~v~f~~l~~~~~~~~~~~~~~~~~~~~~  100 (187)
                      +|-+.+.-...+.+.++..|-      +...+...+.      .+..++.+|+..-.+...+.+.-..+-++|.++.+..
T Consensus         1 ~D~~gi~~S~LC~iHCl~~P~------l~~~l~~~g~------~~~~~~~~h~~ll~~~~~i~~~al~~g~r~h~~~~~~   68 (116)
T PF03203_consen    1 LDRLGIGASLLCAIHCLALPA------LLALLPALGG------FFLENEWFHWLLLYLFLPIALLALFRGYRRHRRWLPL   68 (116)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH------HHhhccHHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence            477777777777777766541      1111222221      1257778888765444433333332224444444444


Q ss_pred             HHHHHHHHHHHHHHH
Q 029833          101 RLAKLYLATITVGSL  115 (187)
Q Consensus       101 ~l~~~~~~~f~~g~~  115 (187)
                      .+...|......|.+
T Consensus        69 ~l~~~G~~ll~~~~~   83 (116)
T PF03203_consen   69 ALGVIGLALLLLALF   83 (116)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555556555555553


No 13 
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]
Probab=44.84  E-value=13  Score=31.90  Aligned_cols=34  Identities=24%  Similarity=0.443  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcchhhhcccchhhhHHHHHHHhHH
Q 029833          105 LYLATITVGSLCWLCDRLFCEKISLWYFNPQGHALWHTFMGFNS  148 (187)
Q Consensus       105 ~~~~~f~~g~~~W~~D~~~C~~l~~~~~~~elH~wWHiltgig~  148 (187)
                      .|...+.+|.++--+|.          ..|--|+.||+|.++|+
T Consensus       244 ~GG~~Y~lGvvFFK~DG----------~ipfAHAIWHLFV~l~A  277 (298)
T KOG4243|consen  244 TGGLFYCLGVVFFKSDG----------IIPFAHAIWHLFVALAA  277 (298)
T ss_pred             hCCEEEEEEEEEEecCC----------ceehHHHHHHHHHHHHc
Confidence            45556666666666665          24677999999999987


No 14 
>PF12491 ApoB100_C:  Apolipoprotein B100 C terminal;  InterPro: IPR022176  This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport. 
Probab=41.80  E-value=14  Score=24.62  Aligned_cols=17  Identities=24%  Similarity=0.237  Sum_probs=14.8

Q ss_pred             HHHHhhhhhhhhhcchh
Q 029833            9 LYHATLQHMQQQGDETP   25 (187)
Q Consensus         9 ~FHaTL~~~~QllDElp   25 (187)
                      -|||.|+|-+||+-|+-
T Consensus        34 nY~~Fl~yi~eLL~~lq   50 (58)
T PF12491_consen   34 NYHMFLRYITELLKELQ   50 (58)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            48999999999998863


No 15 
>PF05019 Coq4:  Coenzyme Q (ubiquinone) biosynthesis protein Coq4;  InterPro: IPR007715 Coenzyme Q biosynthesis Coq4p (also known as Ubiquinone biosynthesis protein COQ4) was shown to peripherally associate with the matrix face of the mitochondrial inner membrane. The putative mitochondrial- targeting sequence present at the N terminus of the polypeptide efficiently imports it to mitochondria. The function of Coq4p is unknown, although its presence is required to maintain a steady-state level of Coq7p, another component of the Q biosynthetic pathway [].; GO: 0006744 ubiquinone biosynthetic process; PDB: 3MSQ_D 3KB4_B.
Probab=31.97  E-value=22  Score=29.74  Aligned_cols=44  Identities=11%  Similarity=0.151  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHhhhhhhhcchhh-hc------------ccchhhhHHHHHHHhHHHH
Q 029833          107 LATITVGSLCWLCDRLFCEKISL-WY------------FNPQGHALWHTFMGFNSYF  150 (187)
Q Consensus       107 ~~~f~~g~~~W~~D~~~C~~l~~-~~------------~~~elH~wWHiltgig~Y~  150 (187)
                      -.+++=+|.-|+-++.+=.+-+. .+            -.=|.|=.||++||.|.-.
T Consensus        83 ~gTlG~~Y~~fm~~~gl~pd~r~~v~~v~d~e~aYv~~R~re~HDi~HvLtG~~td~  139 (222)
T PF05019_consen   83 EGTLGRAYADFMDRNGLSPDGRPPVRFVDDPELAYVMQRYRETHDIWHVLTGYGTDV  139 (222)
T ss_dssp             TTBHHHHHHHHHHHTT------------SHSHHHHHHHHHHHCHHHHHHHHT--SSH
T ss_pred             CCCcHHHHHHHHHHcCCcccCCCCCcCcCCcHHHHHHHHHHcCcchhhHhcCCCCCc
Confidence            34677777777776655433221 00            1348999999999998743


No 16 
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=25.09  E-value=4.6e+02  Score=22.76  Aligned_cols=48  Identities=17%  Similarity=0.368  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHhh---hhhh---hcchhhhcccchhhhHHHHHHHhHHHHHHHHHHH
Q 029833          104 KLYLATITVGSLCWLC---DRLF---CEKISLWYFNPQGHALWHTFMGFNSYFANTFLMF  157 (187)
Q Consensus       104 ~~~~~~f~~g~~~W~~---D~~~---C~~l~~~~~~~elH~wWHiltgig~Y~~~~~~~~  157 (187)
                      ....++.++|..+-..   +|.+   ||.+      -.-|=+||+++-+|++........
T Consensus       215 ~~~~~~yi~ga~fY~~riPER~~PGkfD~~------G~SHQifHv~vv~~a~~~~~a~~~  268 (286)
T KOG0748|consen  215 ILMAVLYLLGALFYATRIPERWFPGKFDIW------GHSHQIFHVLVVLAALFHLEAVLL  268 (286)
T ss_pred             HHHHHHHHHHHHHhhcCCCcccCCCcccee------CChhHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666555444   3444   3332      355999999999999887665553


No 17 
>PF00599 Flu_M2:  Influenza Matrix protein (M2);  InterPro: IPR002089 This entry contains Influenza virus matrix protein 2. It is an integral membrane protein that is expressed on the infected cell surface and incorporated into virions where it is a minor component. The protein spans the viral membrane with an extracellular amino-terminus and a cytoplasmic carboxy-terminus. The transmembrane domain of the M2 protein forms the channel pore. The M2 protein, which forms a homotetramer, has H+ ion channel which was found to be regulated by pH [ and may have a pivotal role in the biology of Influenza virus infection [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015992 proton transport, 0033644 host cell membrane, 0055036 virion membrane; PDB: 2L0J_A 2KWX_B 2KIH_A 2RLF_A 1MP6_A 2LJB_D 2LJC_A 2H95_B 1NYJ_B 3BKD_E ....
Probab=24.65  E-value=1.3e+02  Score=21.83  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhh
Q 029833          101 RLAKLYLATITVGSLCWLCDRLF  123 (187)
Q Consensus       101 ~l~~~~~~~f~~g~~~W~~D~~~  123 (187)
                      .+...+-++=.+-..+|++||.|
T Consensus        25 ~lv~aA~IiGILHLiLWI~DRlf   47 (97)
T PF00599_consen   25 PLVIAANIIGILHLILWILDRLF   47 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666777778889999999976


No 18 
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=23.65  E-value=2e+02  Score=25.18  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=15.8

Q ss_pred             cchhhhHHHHHHHhHHHHHH
Q 029833          133 NPQGHALWHTFMGFNSYFAN  152 (187)
Q Consensus       133 ~~elH~wWHiltgig~Y~~~  152 (187)
                      +..-||.||+.|.+..-++-
T Consensus       284 lIDaHAlWHL~t~~~t~~ly  303 (319)
T COG5237         284 LIDAHALWHLITCISTPFLY  303 (319)
T ss_pred             HhhHHHHhHhhhccchHHHH
Confidence            45669999999999876553


No 19 
>PF08720 Hema_stalk:  Influenza C hemagglutinin stalk;  InterPro: IPR014831 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the stalk segment of haemagglutinin in influenza C virus. It forms a coiled coil structure [].  More information about haemagglutinin proteins can be found at Protein of the Month: Bird Flu, Haemagglutinin [].; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 1FLC_B.
Probab=23.24  E-value=17  Score=28.14  Aligned_cols=13  Identities=31%  Similarity=1.078  Sum_probs=7.2

Q ss_pred             HHHHhhhhhhhcc
Q 029833          114 SLCWLCDRLFCEK  126 (187)
Q Consensus       114 ~~~W~~D~~~C~~  126 (187)
                      =.||.+||..|+.
T Consensus       135 pgcwiidnnicdq  147 (175)
T PF08720_consen  135 PGCWIIDNNICDQ  147 (175)
T ss_dssp             TTEE---TTTS-H
T ss_pred             CCeEEecCchhhH
Confidence            3589999999985


No 20 
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=22.42  E-value=58  Score=27.07  Aligned_cols=19  Identities=11%  Similarity=0.232  Sum_probs=15.9

Q ss_pred             hhhhhhcchhHHHHHHHHH
Q 029833           16 HMQQQGDETPMVWEMLLYI   34 (187)
Q Consensus        16 ~~~QllDElpMl~~~~~~~   34 (187)
                      +..||.||||.++-.-+.+
T Consensus       158 lN~~L~~ELP~L~~~ri~f  176 (211)
T cd07588         158 LNTELHEELPALYDSRIAF  176 (211)
T ss_pred             HHHHHHHHhHHHHHHhhHH
Confidence            4568999999999988863


No 21 
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=22.38  E-value=54  Score=27.42  Aligned_cols=19  Identities=16%  Similarity=0.296  Sum_probs=15.9

Q ss_pred             hhhhhhcchhHHHHHHHHH
Q 029833           16 HMQQQGDETPMVWEMLLYI   34 (187)
Q Consensus        16 ~~~QllDElpMl~~~~~~~   34 (187)
                      +..||.||||.++-.=+..
T Consensus       158 lN~~Lk~ELP~L~~~Ri~f  176 (211)
T cd07611         158 FNVDLQEELPSLWSRRVGF  176 (211)
T ss_pred             HHHHHHHHHHHHHHhhhHH
Confidence            4568999999999988863


No 22 
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=22.11  E-value=81  Score=26.81  Aligned_cols=64  Identities=22%  Similarity=0.211  Sum_probs=36.6

Q ss_pred             eeeeccccchhHHHHHHHHHHHHHhhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhhhhhh--hcchhhh
Q 029833           61 VAHALFRFGIGFKVHYAVLCLLCIPRMYKYYIHTTDVPAKRLAKLYLATITVGSLCWLCDRLF--CEKISLW  130 (187)
Q Consensus        61 ~~~~~~~~~~~h~v~f~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~g~~~W~~D~~~--C~~l~~~  130 (187)
                      ..+=.++...-.-+-|.++.++++.-... .+     .+-|+..+++.+++.|.-+|+.-|.+  |+.+.++
T Consensus       134 ~lFPlWP~~~r~gv~YlS~~~lgll~~~~-~l-----aivRlilF~i~~~~~g~~fWlfPNLfeD~Gf~eSF  199 (232)
T TIGR00869       134 VLFPLWPRFMRRGSWYLSLGALGIIGGFF-AV-----AILRLILFVLTLIVVKPGIWIFPNLFADVGFLDSF  199 (232)
T ss_pred             hhcccChHHHhHhHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHhCCCeeeecchhcccCcceee
Confidence            33333444444445566555443322111 01     34578888999999999999988866  3344443


Done!