Query 029833
Match_columns 187
No_of_seqs 105 out of 305
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 06:31:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bkd_A Transmembrane domain of 38.7 40 0.0014 17.9 3.1 21 103-123 6-26 (26)
2 2ljb_A M2 protein, BM2 protein 28.7 69 0.0024 18.2 3.2 22 102-123 9-30 (35)
3 2kih_A Matrix protein 2; S31N, 28.6 68 0.0023 19.0 3.3 22 102-123 9-30 (43)
4 3msq_A Putative ubiquinone bio 22.2 23 0.00079 28.4 0.6 50 101-150 79-139 (224)
5 1flc_B Haemagglutinin-esterase 20.1 11 0.00036 28.1 -1.7 12 115-126 136-147 (175)
6 1loi_A Cyclic 3',5'-AMP specif 18.6 43 0.0015 17.5 1.0 18 122-143 6-23 (26)
7 3lbw_A M2 protein; proton chan 18.5 1.2E+02 0.004 15.7 3.2 17 106-122 6-22 (23)
8 3kb4_A ALR8543 protein; alpha- 15.2 40 0.0014 27.2 0.4 49 102-150 75-133 (225)
9 2zjs_E Preprotein translocase 13.9 2.5E+02 0.0084 17.4 4.1 24 100-123 29-52 (60)
10 3dl8_C SECE; RECA-type ATPase 9.6 2.7E+02 0.0092 17.5 3.1 23 101-123 29-51 (65)
No 1
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=38.73 E-value=40 Score=17.94 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 029833 103 AKLYLATITVGSLCWLCDRLF 123 (187)
Q Consensus 103 ~~~~~~~f~~g~~~W~~D~~~ 123 (187)
...+-++=.+-..+|..||.|
T Consensus 6 v~aa~iiGilHLiLwIldrlf 26 (26)
T 3bkd_A 6 VVAASIMGILHLILWILDRLX 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHhhcC
Confidence 334445556677889999864
No 2
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=28.68 E-value=69 Score=18.25 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 029833 102 LAKLYLATITVGSLCWLCDRLF 123 (187)
Q Consensus 102 l~~~~~~~f~~g~~~W~~D~~~ 123 (187)
+...+-++=.+-+.+|.+||.|
T Consensus 9 lviaA~IigiLHlilWildrLf 30 (35)
T 2ljb_A 9 LVVAASIIGILHFIAWTIGHLN 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhH
Confidence 4555666667788999999965
No 3
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=28.57 E-value=68 Score=18.97 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 029833 102 LAKLYLATITVGSLCWLCDRLF 123 (187)
Q Consensus 102 l~~~~~~~f~~g~~~W~~D~~~ 123 (187)
+...+-++=.+-..+|.+||.|
T Consensus 9 lv~aa~iiGIlHLiLwildRlf 30 (43)
T 2kih_A 9 LVVAANIIGILHLILWILDRLF 30 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667788999999976
No 4
>3msq_A Putative ubiquinone biosynthesis protein; COQ4 superfamily, structural genomics, joint center for STRU genomics, JCSG; 2.85A {Nostoc punctiforme}
Probab=22.25 E-value=23 Score=28.43 Aligned_cols=50 Identities=22% Similarity=0.131 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchhhh-c----------ccchhhhHHHHHHHhHHHH
Q 029833 101 RLAKLYLATITVGSLCWLCDRLFCEKISLW-Y----------FNPQGHALWHTFMGFNSYF 150 (187)
Q Consensus 101 ~l~~~~~~~f~~g~~~W~~D~~~C~~l~~~-~----------~~~elH~wWHiltgig~Y~ 150 (187)
.+...-=.+++-+|.-|+-++.+=.+.+.- + -.-|.|=+||++||.+.-.
T Consensus 79 ~L~~lP~gTlG~~Y~~fl~~~g~spd~~~~v~~~~d~ayv~~R~re~HD~~HvLtG~~t~~ 139 (224)
T 3msq_A 79 DLAKLPEGTLGHVYAREMKARGFDPYFYKKVPVVDDISYLKMLWRSTHDIYHVVAGFDTNV 139 (224)
T ss_dssp HHHTSCTTBHHHHHHHHHHHC-----CCCCCCCCSHHHHHHHHHHHHHHHHHHHHTCCSSH
T ss_pred HHHcCCCCChHHHHHHHHHHcCCCCCccCCCCCCcHHHHHHHHHhcchhhhhhccCCCCCc
Confidence 344344568889999999888775442210 0 0248999999999988643
No 5
>1flc_B Haemagglutinin-esterase-fusion glycoprotein; receptor binding, membrane fusion, influenz hydrolase; HET: NDG NAG BMA MAN; 3.20A {Influenza c virus} SCOP: h.3.1.1
Probab=20.07 E-value=11 Score=28.14 Aligned_cols=12 Identities=33% Similarity=1.157 Sum_probs=10.5
Q ss_pred HHHhhhhhhhcc
Q 029833 115 LCWLCDRLFCEK 126 (187)
Q Consensus 115 ~~W~~D~~~C~~ 126 (187)
.||.+||..|+.
T Consensus 136 gcwiidnnicdq 147 (175)
T 1flc_B 136 GCWIIDNNICDQ 147 (175)
T ss_dssp TEECCCTTTSCH
T ss_pred CeEEecCchhhH
Confidence 489999999985
No 6
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=18.63 E-value=43 Score=17.51 Aligned_cols=18 Identities=39% Similarity=0.798 Sum_probs=13.4
Q ss_pred hhhcchhhhcccchhhhHHHHH
Q 029833 122 LFCEKISLWYFNPQGHALWHTF 143 (187)
Q Consensus 122 ~~C~~l~~~~~~~elH~wWHil 143 (187)
+||+.-+. |.+-|||.-+
T Consensus 6 ffcetcsk----pwlvgwwdqf 23 (26)
T 1loi_A 6 FFCETCSK----PWLVGWWDQF 23 (26)
T ss_dssp HHHHTSSC----TTGGGGHHHH
T ss_pred HHHHhcCC----chhhhhHHHh
Confidence 57887664 7889999654
No 7
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=18.54 E-value=1.2e+02 Score=15.68 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhhhh
Q 029833 106 YLATITVGSLCWLCDRL 122 (187)
Q Consensus 106 ~~~~f~~g~~~W~~D~~ 122 (187)
+-++=.+-..+|..||.
T Consensus 6 a~iigIlHLiLwIlDrL 22 (23)
T 3lbw_A 6 ASIIAILHLILWILDRL 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34445566778999983
No 8
>3kb4_A ALR8543 protein; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG, function; HET: GR0; 2.41A {Nostoc SP}
Probab=15.23 E-value=40 Score=27.16 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhhh--c--------ccchhhhHHHHHHHhHHHH
Q 029833 102 LAKLYLATITVGSLCWLCDRLFCEKISLW--Y--------FNPQGHALWHTFMGFNSYF 150 (187)
Q Consensus 102 l~~~~~~~f~~g~~~W~~D~~~C~~l~~~--~--------~~~elH~wWHiltgig~Y~ 150 (187)
+...-=.+++-+|.-|+-++.+=.+.+.- . ..=|.|=+||++||.+...
T Consensus 75 L~~lP~gTlG~~Y~~fl~~~g~~pd~~~~~~d~~~aYv~~R~re~HD~~HvltG~~~~~ 133 (225)
T 3kb4_A 75 LHQLPNYTLGYMYADHMIRNQLTPPPVNENVNHPFMFLAAHLGETHDIWHVVTGCDTDK 133 (225)
T ss_dssp HTTSCTTBHHHHHHHHHHHTTCCC-----CCCSHHHHHHHHHHHSHHHHHHHHTCCSSH
T ss_pred HHcCCCCChHHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHHHhhhhhHHHHhhCCCCCc
Confidence 33333457888888888887665443220 0 0128999999999988643
No 9
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=13.95 E-value=2.5e+02 Score=17.35 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 029833 100 KRLAKLYLATITVGSLCWLCDRLF 123 (187)
Q Consensus 100 ~~l~~~~~~~f~~g~~~W~~D~~~ 123 (187)
+.....-+...++|.++|.+|..+
T Consensus 29 ~~t~vViv~v~i~~~~~~~vD~~~ 52 (60)
T 2zjs_E 29 EGTQAILLFTLAFMVILGLYDTVF 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567888999999999865
No 10
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=9.57 E-value=2.7e+02 Score=17.53 Aligned_cols=23 Identities=17% Similarity=0.505 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 029833 101 RLAKLYLATITVGSLCWLCDRLF 123 (187)
Q Consensus 101 ~l~~~~~~~f~~g~~~W~~D~~~ 123 (187)
.....-+...++|.++|.+|..+
T Consensus 29 ~T~vViv~v~i~~~~i~~vD~~~ 51 (65)
T 3dl8_C 29 ATISVIIFSLAIGVYLWILDLTF 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567888999999999865
Done!