Query 029833
Match_columns 187
No_of_seqs 105 out of 305
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 06:31:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029833.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029833hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftc_ f.25.1.1 (C:) Cytochro 8.3 2E+02 0.015 19.7 4.4 18 133-151 124-141 (185)
2 d1guza1 c.2.1.5 (A:1-142) Mala 5.3 1.1E+02 0.0077 20.2 1.1 23 2-24 5-28 (142)
3 d1ojua1 c.2.1.5 (A:22-163) Mal 4.6 1.3E+02 0.0094 20.0 1.2 24 2-25 5-29 (142)
4 d2r7ca2 d.216.1.1 (A:2-143) Ro 4.2 1.2E+02 0.0088 20.7 0.8 19 14-32 69-87 (142)
5 d1u8xx1 c.2.1.5 (X:3-169) Malt 4.1 86 0.0063 21.7 -0.1 18 2-19 8-25 (167)
6 d1a5za1 c.2.1.5 (A:22-163) Lac 3.5 1.8E+02 0.013 19.1 1.2 23 2-24 5-28 (140)
7 d1ldna1 c.2.1.5 (A:15-162) Lac 3.1 2.1E+02 0.015 18.9 1.2 23 2-24 11-34 (148)
8 d1y6ja1 c.2.1.5 (A:7-148) Lact 2.9 2.2E+02 0.016 18.7 1.2 20 2-23 6-28 (142)
9 d1tf3a1 g.37.1.1 (A:1-40) Tran 2.9 1.9E+02 0.014 14.5 0.6 10 117-126 19-28 (31)
10 d1obba1 c.2.1.5 (A:2-172) Alph 2.8 2.8E+02 0.02 18.7 1.6 10 2-11 7-16 (171)
No 1
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=8.26 E-value=2e+02 Score=19.66 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=13.3
Q ss_pred cchhhhHHHHHHHhHHHHH
Q 029833 133 NPQGHALWHTFMGFNSYFA 151 (187)
Q Consensus 133 ~~elH~wWHiltgig~Y~~ 151 (187)
...+|+. |+.+|+..-..
T Consensus 124 lTGlH~l-HV~~Gli~L~~ 141 (185)
T d1fftc_ 124 LVGTHGL-HVTSGLIWMAV 141 (185)
T ss_dssp HHHHHTT-HHHHTTHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHH
Confidence 4778887 99999976433
No 2
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}
Probab=5.25 E-value=1.1e+02 Score=20.25 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=11.2
Q ss_pred eeehhHHHHHHhhhhhhh-hhcch
Q 029833 2 ILAIGSMLYHATLQHMQQ-QGDET 24 (187)
Q Consensus 2 ~VGiGS~~FHaTL~~~~Q-llDEl 24 (187)
++|.|+...+..+.--.+ +.||+
T Consensus 5 IIGaG~VG~~la~~l~~~~l~~el 28 (142)
T d1guza1 5 VIGAGNVGATTAFRLAEKQLAREL 28 (142)
T ss_dssp EECCSHHHHHHHHHHHHTTCCSEE
T ss_pred EECcCHHHHHHHHHHHhCCCCceE
Confidence 567666555533332222 45553
No 3
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.58 E-value=1.3e+02 Score=20.03 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=13.5
Q ss_pred eeehhHHHHHHhhhhhhh-hhcchh
Q 029833 2 ILAIGSMLYHATLQHMQQ-QGDETP 25 (187)
Q Consensus 2 ~VGiGS~~FHaTL~~~~Q-llDElp 25 (187)
++|.|....+..+.--.| +.||+-
T Consensus 5 IIGaG~VG~~~a~~l~~~~~~~elv 29 (142)
T d1ojua1 5 FVGAGRVGSTSAFTCLLNLDVDEIA 29 (142)
T ss_dssp EECCSHHHHHHHHHHHHHSCCSEEE
T ss_pred EECcCHHHHHHHHHHHhcCcCceEE
Confidence 567655555554444444 777753
No 4
>d2r7ca2 d.216.1.1 (A:2-143) Rotavirus NSP2 fragment, N-terminal domain {Simian 11 rotavirus [TaxId: 10923]}
Probab=4.18 E-value=1.2e+02 Score=20.67 Aligned_cols=19 Identities=11% Similarity=-0.052 Sum_probs=15.1
Q ss_pred hhhhhhhhcchhHHHHHHH
Q 029833 14 LQHMQQQGDETPMVWEMLL 32 (187)
Q Consensus 14 L~~~~QllDElpMl~~~~~ 32 (187)
+.|++++.||++++..-..
T Consensus 69 mnyet~m~~kVA~Li~~~L 87 (142)
T d2r7ca2 69 MNFETIMFTKVAMLICEAL 87 (142)
T ss_dssp BCTTSHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHh
Confidence 6799999999988765443
No 5
>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}
Probab=4.14 E-value=86 Score=21.73 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=11.6
Q ss_pred eeehhHHHHHHhhhhhhh
Q 029833 2 ILAIGSMLYHATLQHMQQ 19 (187)
Q Consensus 2 ~VGiGS~~FHaTL~~~~Q 19 (187)
++|-||..++.......+
T Consensus 8 iIGaGsv~~~~~~~~ll~ 25 (167)
T d1u8xx1 8 IAGGGSTFTPGIVLMLLD 25 (167)
T ss_dssp EECTTSSSHHHHHHHHHH
T ss_pred EECCChhhhHHHHHHHHh
Confidence 678888877755444444
No 6
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=3.55 E-value=1.8e+02 Score=19.09 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=11.5
Q ss_pred eeehhHHHHHHhhhhhhh-hhcch
Q 029833 2 ILAIGSMLYHATLQHMQQ-QGDET 24 (187)
Q Consensus 2 ~VGiGS~~FHaTL~~~~Q-llDEl 24 (187)
++|-|+...+.-+.--.+ +.||+
T Consensus 5 IIGaG~VG~~~a~~l~~~~l~~el 28 (140)
T d1a5za1 5 IVGLGRVGSSTAFALLMKGFAREM 28 (140)
T ss_dssp EECCSHHHHHHHHHHHHHTCCSEE
T ss_pred EECcCHHHHHHHHHHHhCCCCCEE
Confidence 567666555543332223 56664
No 7
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.09 E-value=2.1e+02 Score=18.88 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=9.8
Q ss_pred eeehhHHHHHHhhhhhhh-hhcch
Q 029833 2 ILAIGSMLYHATLQHMQQ-QGDET 24 (187)
Q Consensus 2 ~VGiGS~~FHaTL~~~~Q-llDEl 24 (187)
++|.|...-+..+.--.| +.||+
T Consensus 11 IiGaG~vG~~~a~~l~~~~l~~el 34 (148)
T d1ldna1 11 VIGAGFVGASYVFALMNQGIADEI 34 (148)
T ss_dssp EECCSHHHHHHHHHHHHHTCCSEE
T ss_pred EECcCHHHHHHHHHHHhcCCCceE
Confidence 456544333333332222 55664
No 8
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}
Probab=2.89 E-value=2.2e+02 Score=18.66 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=9.0
Q ss_pred eeeh---hHHHHHHhhhhhhhhhcc
Q 029833 2 ILAI---GSMLYHATLQHMQQQGDE 23 (187)
Q Consensus 2 ~VGi---GS~~FHaTL~~~~QllDE 23 (187)
++|. ||.+=|..+.- .+.||
T Consensus 6 IIGaG~VG~~~a~~l~~~--~l~~e 28 (142)
T d1y6ja1 6 IIGAGFVGASAAFTMALR--QTANE 28 (142)
T ss_dssp EECCSHHHHHHHHHHHHT--TCSSE
T ss_pred EECCCHHHHHHHHHHHhc--CCCCE
Confidence 4565 44444333221 15666
No 9
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=2.89 E-value=1.9e+02 Score=14.54 Aligned_cols=10 Identities=10% Similarity=0.431 Sum_probs=6.0
Q ss_pred Hhhhhhhhcc
Q 029833 117 WLCDRLFCEK 126 (187)
Q Consensus 117 W~~D~~~C~~ 126 (187)
|-+|-++|..
T Consensus 19 wkL~AHLckH 28 (31)
T d1tf3a1 19 WKLQAHLSKH 28 (31)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhHHhhhh
Confidence 5566666643
No 10
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}
Probab=2.76 E-value=2.8e+02 Score=18.67 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=7.5
Q ss_pred eeehhHHHHH
Q 029833 2 ILAIGSMLYH 11 (187)
Q Consensus 2 ~VGiGS~~FH 11 (187)
++|-||..|-
T Consensus 7 iIGaGsvg~t 16 (171)
T d1obba1 7 IIGAGSAVFS 16 (171)
T ss_dssp EETTTCHHHH
T ss_pred EECCCHHHhH
Confidence 6788888764
Done!