BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029834
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
pdb|2WT9|B Chain B, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 235
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 35 YPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCF----DGYFGSIEDDGSNV--FVDWV 88
+P HCI GTH++ P L P + + F D Y +E D + + ++
Sbjct: 107 WPKHCIQGTHDAEFHPDL----NIPTAQLIIRKGFHAHIDSYSAFMEADHTTMTGLTGYL 162
Query: 89 KNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATH 148
K I + VVG+ TD CV + + A +GF + +V AC D+
Sbjct: 163 KERGIDTVYVVGIATDFCV---AWTALDAVKQGF-----KTLVIEDACKGIDL------- 207
Query: 149 TKGALAHPQEFMHHVGL 165
G+L + M G+
Sbjct: 208 -NGSLEQAWQTMQQQGV 223
>pdb|2WTA|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 213
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 25/137 (18%)
Query: 35 YPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCF----DGYFGSIEDDGSNV--FVDWV 88
+P HCI GTH++ P L P + + F D Y +E D + + ++
Sbjct: 84 WPKHCIQGTHDAEFHPDL----NIPTAQLIIRKGFHAHIDSYSAFMEADHTTMTGLTGYL 139
Query: 89 KNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATH 148
K I + VVG+ TD C + + + + A +GF + +V AC D+
Sbjct: 140 KERGIDTVYVVGIATDFCXVAW--TALDAVKQGF-----KTLVIEDACKGIDL------- 185
Query: 149 TKGALAHPQEFMHHVGL 165
G+L + M G+
Sbjct: 186 -NGSLEQAWQTMQQQGV 201
>pdb|3R2J|A Chain A, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|B Chain B, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|C Chain C, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
pdb|3R2J|D Chain D, Crystal Structure Of Pnc1 From L. Infantum In Complex With
Nicotinate
Length = 227
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 34 PYPTHCIAGTHESNLVPALQWIEKEPNVTIRR--KDCFDGYFGSIEDDG-SNVFVDWVKN 90
P+P HC+ G+ + L L + N IR+ D Y +ED+G S + +
Sbjct: 97 PWPPHCVQGSAGAQLHAGLH--TQRINAVIRKGVTQQADSYSAFVEDNGVSTGLAGLLHS 154
Query: 91 HQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEE 128
R++ V GV D CV + M AR GF L E
Sbjct: 155 IGARRVFVCGVAYDFCVF---FTAMDARKNGFSVVLLE 189
>pdb|3PL1|A Chain A, Determination Of The Crystal Structure Of The
Pyrazinamidase From M.Tuberculosis : A
Structure-Function Analysis For Prediction Resistance To
Pyrazinamide
Length = 186
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 26 HHPNKPE--DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIE--DDGS 81
H P+ +P HC++GT ++ P+L E + K + G + E D+
Sbjct: 57 HFSGTPDYSSSWPPHCVSGTPGADFHPSLDTSAIE---AVFYKGAYTGAYSGFEGVDENG 113
Query: 82 NVFVDWVKNHQIRKLVVVGVCTDICV 107
++W++ + ++ VVG+ TD CV
Sbjct: 114 TPLLNWLRQRGVDEVDVVGIATDHCV 139
>pdb|3EEF|A Chain A, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
pdb|3EEF|B Chain B, Crystal Structure Of N-Carbamoylsarcosine Amidase From
Thermoplasma Acidophilum
Length = 182
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 2 INESARLARAFCDRRLPVMAFLDTHHPNKPE-DPYPTHCIAGTHESNLVPALQWIEKEPN 60
+ + ++ F LPV+ D+H+P+ PE + H G S ++ I
Sbjct: 28 VGPARKVIETFRRSGLPVVYVNDSHYPDDPEIRIWGRHSXKGDDGSEVIDE---IRPSAG 84
Query: 61 VTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICV 107
+ K + G++G+ D ++ + I +V++G+ DICV
Sbjct: 85 DYVLEKHAYSGFYGTNLD-------XILRANGIDTVVLIGLDADICV 124
>pdb|3S2S|A Chain A, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|B Chain B, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|C Chain C, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|D Chain D, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
Length = 217
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 26/141 (18%)
Query: 24 DTHHPNKPEDPYPTHCIAGTHESNLVPAL----QWIEKEPNVTIRRKDCFDGYFGSIEDD 79
D HP +P H I GT +L AL Q E + V K + + G+ D
Sbjct: 93 DDFHPETK--LFPPHNIKGTSGRDLYGALADFYQKHENDKRVFWMDKRHYSAFSGTDLDI 150
Query: 80 GSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATF 139
++ ++ +V+ GV TDICVL + + A N G+ ++ V +A A+
Sbjct: 151 -------RLRERRVDTVVLTGVLTDICVL---HTAIDAYNLGY-----QIEVVQSAVASL 195
Query: 140 DIPTHVATHTKGALAHPQEFM 160
H + AL H Q +
Sbjct: 196 SQENH-----QFALNHLQNVL 211
>pdb|1YAC|A Chain A, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
Product From Escherichia Coli Reveals An Octameric
Hydrolase Of Unknown Specificity
pdb|1YAC|B Chain B, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
Product From Escherichia Coli Reveals An Octameric
Hydrolase Of Unknown Specificity
Length = 208
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 74 GSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYS 133
G+I + FV VK ++L++ GV T++CV +SA GF +V V +
Sbjct: 86 GNINAWDNEDFVKAVKATGKKQLIIAGVVTEVCV---AFPALSAIEEGF-----DVFVVT 137
Query: 134 AACATFD 140
A TF+
Sbjct: 138 DASGTFN 144
>pdb|3O90|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 18/125 (14%)
Query: 6 ARLARAFCDRRLPVMAFLDTHHPNK---PEDP-YPTHCIAGTHESNLVPALQWIEKEPNV 61
+++ R +R + +D H N PE +P H + GT NL L +E
Sbjct: 55 SKVTRLAFERGDYIFFTIDAHEENDCFHPESKLFPPHNLIGTSGRNLYGDLGIFYQEHGS 114
Query: 62 TIR----RKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSA 117
R K + + G+ D ++ ++ +++ GV TDICVL + + A
Sbjct: 115 DSRVFWMDKRHYSAFSGTDLDI-------RLRERRVSTVILTGVLTDICVLH---TAIDA 164
Query: 118 RNRGF 122
N G+
Sbjct: 165 YNLGY 169
>pdb|1IM5|A Chain A, Crystal Structure Of Pyrazinamidase Of Pyrococcus
Horikoshii In Complex With Zinc
pdb|1ILW|A Chain A, Crystal Structure Of PyrazinamidaseNICOTINAMIDASE OF
Pyrococcus Horikoshii
Length = 180
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 24/123 (19%)
Query: 10 RAFCDRRLPVMAFLDTHHPN-----KPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIR 64
R F ++ ++A D H N + P+P HC+ T + V L E V I
Sbjct: 38 RKFKEKGALIVATRDWHPENHISFRERGGPWPRHCVQNTPGAEFVVDLP----EDAVIIS 93
Query: 65 R-----KDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARN 119
+ K+ + G+ G+ D + + + + ++++ + GV T+ CV + + A
Sbjct: 94 KATEPDKEAYSGFEGT---DLAKIL----RGNGVKRVYICGVATEYCVR---ATALDALK 143
Query: 120 RGF 122
GF
Sbjct: 144 HGF 146
>pdb|1DQ7|A Chain A, Three-Dimensional Structure Of A Neurotoxin From Red
Scorpion (Buthus Tamulus) At 2.2a Resolution.
pdb|1DQ7|B Chain B, Three-Dimensional Structure Of A Neurotoxin From Red
Scorpion (Buthus Tamulus) At 2.2a Resolution.
pdb|2A7T|A Chain A, Crystal Structure Of A Novel Neurotoxin From Buthus
Tamalus At 2.2a Resolution.
pdb|2A7T|B Chain B, Crystal Structure Of A Novel Neurotoxin From Buthus
Tamalus At 2.2a Resolution
Length = 64
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 19/50 (38%)
Query: 102 CTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKG 151
CT IC + C + +G + V Y C D+PT V G
Sbjct: 12 CTYICTFNNYCHALCTDKKGDSGACDWWVPYGVVCWCEDLPTPVPIRGSG 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,903,056
Number of Sequences: 62578
Number of extensions: 237066
Number of successful extensions: 682
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 13
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)