BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029834
(187 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O32091|PNCA_BACSU Uncharacterized isochorismatase family protein PncA OS=Bacillus
subtilis (strain 168) GN=pncA PE=3 SV=1
Length = 183
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 24/153 (15%)
Query: 1 MINES-ARLARAFCDRRLPVMAFLDTHHPNKPEDP----YPTHCIAGTHESNL----VPA 51
MI E+ L + F V+ +D+H P +P H I GT +L +P
Sbjct: 29 MIEEAIVNLTKEFITNGDYVVLAVDSHDEGDQYHPETRLFPPHNIKGTEGKDLYGKLLPL 88
Query: 52 LQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFV 111
Q E EPNV K + + G+ + ++ QI +L + GVCTDICVL
Sbjct: 89 YQKHEHEPNVYYMEKTRYSAFAGTDLELK-------LRERQIGELHLAGVCTDICVLH-- 139
Query: 112 CSTMSARNRGFLRPLEEVVVYSAACATFDIPTH 144
+ + A N+GF +VV+ A A+F+ H
Sbjct: 140 -TAVDAYNKGF-----RIVVHKQAVASFNQEGH 166
>sp|P21369|PNCA_ECOLI Pyrazinamidase/nicotinamidase OS=Escherichia coli (strain K12)
GN=pncA PE=3 SV=1
Length = 213
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 14/85 (16%)
Query: 31 PEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRK-----DCFDGYFGSIEDDG---SN 82
P+ +P HC+ + + L P L +K + D + +F D+G
Sbjct: 79 PQTFWPDHCVQNSEGAQLHPLLH--QKAIAAVFHKGENPLVDSYSAFF----DNGRRQKT 132
Query: 83 VFVDWVKNHQIRKLVVVGVCTDICV 107
DW+++H+I +L+V+G+ TD CV
Sbjct: 133 SLDDWLRDHEIDELIVMGLATDYCV 157
>sp|P98106|LYAM3_RAT P-selectin OS=Rattus norvegicus GN=Selp PE=2 SV=1
Length = 768
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 11/110 (10%)
Query: 42 GTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGV 101
GT+++ A W + EPN +DC + Y S G + D + R L
Sbjct: 105 GTNKTLTAEAENWADNEPNNKRNNQDCVEIYIKSNSAPGK--WNDEPCFKRKRALCYTAS 162
Query: 102 CTDICV------LDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHV 145
C D+ ++ + S + GF P E Y C FDIP HV
Sbjct: 163 CQDMSCNSQGERIETIGSYTCSCYPGFYGPECE---YVQECGKFDIPQHV 209
>sp|Q4L4U2|NAGD_STAHJ Protein NagD homolog OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=nagD PE=3 SV=1
Length = 263
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 69 FDG--YFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCT 103
DG Y G+ E DG+ F+D++ NHQI L V T
Sbjct: 11 LDGTMYLGTDEIDGAAQFIDYLNNHQIPHLYVTNNST 47
>sp|P42201|LYAM3_BOVIN P-selectin OS=Bos taurus GN=SELP PE=2 SV=1
Length = 646
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 21/115 (18%)
Query: 42 GTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGS-NVFVDWVKNHQIRKLVVVG 100
GT ++ A W + EPN +DC + Y S+ G N W + R L
Sbjct: 105 GTKKTLTEEAENWADNEPNNKRNNQDCVEIYIKSLSAPGKWNDEPCWKRK---RALCYRA 161
Query: 101 VCTDI----------CVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHV 145
C D+ + ++ CS GF P E Y C FD+P HV
Sbjct: 162 SCQDMSCSKQGECIETIGNYTCSCYP----GFYGPECE---YVRECGEFDLPQHV 209
>sp|D4GWH7|Y2328_HALVD Uncharacterized isochorismatase family protein HVO_2328
OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 /
JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
GN=HVO_2328 PE=1 SV=1
Length = 188
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 87 WVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTH 144
W++ LVV G+ TD CV +T A N GF +V + + A ATFD H
Sbjct: 104 WLRERDHSTLVVCGLTTDHCV---STTTRMAENLGF-----DVYLPADATATFDREGH 153
>sp|Q1RK13|Y220_RICBR Putative ankyrin repeat protein RBE_0220 OS=Rickettsia bellii
(strain RML369-C) GN=RBE_0220 PE=4 SV=1
Length = 826
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 11 AFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRR 65
AF + L+T+ N P P P I T N WI+ E N+T+ +
Sbjct: 628 AFLKAEIKSQRTLNTNQSNNPLPPKPPRLIKNTTTQNEENKKTWIKSEANLTLSQ 682
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,765,091
Number of Sequences: 539616
Number of extensions: 2928366
Number of successful extensions: 7419
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7412
Number of HSP's gapped (non-prelim): 8
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)