Query 029834
Match_columns 187
No_of_seqs 101 out of 1219
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:23:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02743 nicotinamidase 100.0 3.7E-40 8E-45 274.3 17.8 181 1-181 59-239 (239)
2 PRK11609 nicotinamidase/pyrazi 100.0 6.9E-33 1.5E-37 226.0 14.4 157 1-184 28-210 (212)
3 cd01015 CSHase N-carbamoylsarc 100.0 3.1E-31 6.7E-36 211.1 12.9 147 1-182 25-178 (179)
4 cd01011 nicotinamidase Nicotin 100.0 4.3E-31 9.3E-36 213.5 12.6 145 1-176 27-196 (196)
5 PLN02621 nicotinamidase 100.0 6.4E-31 1.4E-35 212.7 12.6 148 1-183 39-192 (197)
6 PF00857 Isochorismatase: Isoc 100.0 5.3E-31 1.1E-35 207.1 10.2 145 1-180 25-174 (174)
7 PRK11440 putative hydrolase; P 100.0 1.2E-30 2.6E-35 209.2 12.4 147 1-183 33-186 (188)
8 TIGR03614 RutB pyrimidine util 100.0 1.4E-30 3.1E-35 214.8 12.8 150 1-184 47-218 (226)
9 cd01013 isochorismatase Isocho 100.0 3.5E-30 7.7E-35 209.3 12.6 144 1-179 55-203 (203)
10 PTZ00331 alpha/beta hydrolase; 100.0 2.8E-29 6.1E-34 205.5 12.9 145 1-182 38-210 (212)
11 COG1335 PncA Amidases related 100.0 3.3E-29 7.1E-34 202.5 12.4 129 1-144 34-176 (205)
12 cd00431 cysteine_hydrolases Cy 100.0 2.2E-28 4.8E-33 190.2 12.2 126 1-144 25-153 (161)
13 cd01014 nicotinamidase_related 99.9 2.2E-27 4.9E-32 185.0 12.9 130 1-162 24-153 (155)
14 cd01012 YcaC_related YcaC rela 99.9 1.6E-27 3.5E-32 186.1 10.7 132 1-183 21-153 (157)
15 COG1535 EntB Isochorismate hyd 99.9 1.4E-22 3E-27 160.2 7.7 147 1-184 56-209 (218)
16 KOG4003 Pyrazinamidase/nicotin 99.8 5.6E-19 1.2E-23 139.6 7.8 128 4-144 32-195 (223)
17 KOG4044 Mitochondrial associat 99.5 3.9E-14 8.4E-19 110.9 9.6 129 1-181 37-166 (201)
18 PRK08329 threonine synthase; V 66.2 20 0.00044 31.3 6.4 63 62-135 73-136 (347)
19 KOG3125 Thymidine kinase [Nucl 66.0 27 0.00059 28.8 6.6 98 3-111 42-149 (234)
20 PRK06381 threonine synthase; V 64.4 22 0.00048 30.4 6.2 65 62-137 32-97 (319)
21 cd06446 Trp-synth_B Tryptophan 62.9 21 0.00045 31.4 5.9 65 62-136 51-116 (365)
22 TIGR01415 trpB_rel pyridoxal-p 61.4 18 0.0004 32.6 5.4 88 62-179 86-174 (419)
23 cd06448 L-Ser-dehyd Serine deh 59.5 27 0.00058 30.1 5.9 64 63-137 18-85 (316)
24 cd00640 Trp-synth-beta_II Tryp 57.5 29 0.00063 28.2 5.5 67 62-137 16-84 (244)
25 cd01561 CBS_like CBS_like: Thi 57.1 36 0.00078 28.6 6.2 67 62-137 18-87 (291)
26 PRK13397 3-deoxy-7-phosphohept 56.2 23 0.00049 30.0 4.7 92 4-103 67-162 (250)
27 TIGR01275 ACC_deam_rel pyridox 54.5 38 0.00082 28.8 6.0 42 86-136 49-91 (311)
28 TIGR00263 trpB tryptophan synt 51.9 41 0.00089 29.9 5.9 66 62-136 67-132 (385)
29 PRK12391 tryptophan synthase s 51.3 33 0.00071 31.2 5.2 88 62-179 95-183 (427)
30 cd01563 Thr-synth_1 Threonine 49.9 61 0.0013 27.6 6.5 64 63-137 40-104 (324)
31 PF02739 5_3_exonuc_N: 5'-3' e 47.6 20 0.00044 28.2 2.9 43 83-133 90-132 (169)
32 COG1647 Esterase/lipase [Gener 46.2 39 0.00085 28.4 4.5 47 86-141 77-123 (243)
33 PRK07591 threonine synthase; V 44.7 67 0.0015 28.9 6.2 63 62-135 106-169 (421)
34 TIGR01139 cysK cysteine syntha 43.4 85 0.0018 26.5 6.4 65 63-137 23-91 (298)
35 PRK06815 hypothetical protein; 42.1 61 0.0013 27.8 5.3 65 63-137 37-102 (317)
36 TIGR01361 DAHP_synth_Bsub phos 41.9 52 0.0011 27.7 4.8 92 4-103 77-172 (260)
37 PRK06721 threonine synthase; R 41.4 52 0.0011 28.8 4.9 64 62-136 44-108 (352)
38 PRK07048 serine/threonine dehy 41.2 82 0.0018 27.0 6.0 65 62-137 40-106 (321)
39 PRK10717 cysteine synthase A; 40.9 88 0.0019 26.9 6.2 66 62-137 29-98 (330)
40 cd06449 ACCD Aminocyclopropane 40.9 45 0.00097 28.4 4.3 44 86-138 45-89 (307)
41 PRK08197 threonine synthase; V 39.9 1.1E+02 0.0024 27.1 6.8 64 62-136 96-160 (394)
42 PLN02556 cysteine synthase/L-3 39.7 77 0.0017 28.1 5.7 84 62-178 75-163 (368)
43 PRK13802 bifunctional indole-3 39.7 52 0.0011 31.9 4.9 63 87-178 373-435 (695)
44 PF00291 PALP: Pyridoxal-phosp 39.2 58 0.0013 27.1 4.7 62 62-134 25-87 (306)
45 TIGR02171 Fb_sc_TIGR02171 Fibr 39.1 38 0.00083 33.7 3.9 68 2-69 807-876 (912)
46 PRK04346 tryptophan synthase s 39.1 68 0.0015 28.9 5.3 61 89-178 102-162 (397)
47 TIGR01137 cysta_beta cystathio 38.7 87 0.0019 28.0 6.0 64 62-136 27-95 (454)
48 COG2089 SpsE Sialic acid synth 38.6 1.4E+02 0.0031 26.4 7.0 54 83-144 138-191 (347)
49 cd05710 SIS_1 A subgroup of th 38.3 46 0.001 24.1 3.5 20 3-22 61-80 (120)
50 PRK11761 cysM cysteine synthas 38.1 1.1E+02 0.0024 26.0 6.3 64 62-136 28-96 (296)
51 TIGR01136 cysKM cysteine synth 37.7 1.2E+02 0.0026 25.6 6.4 66 63-138 24-93 (299)
52 PRK06608 threonine dehydratase 37.4 94 0.002 27.1 5.8 84 63-179 40-125 (338)
53 PLN02618 tryptophan synthase, 36.7 61 0.0013 29.3 4.6 61 89-178 115-175 (410)
54 TIGR01138 cysM cysteine syntha 36.5 1.3E+02 0.0027 25.5 6.4 66 62-137 24-93 (290)
55 PRK07476 eutB threonine dehydr 36.0 91 0.002 26.8 5.5 65 63-137 36-101 (322)
56 PRK12390 1-aminocyclopropane-1 35.9 1.3E+02 0.0027 26.0 6.4 42 85-135 59-101 (337)
57 PRK12595 bifunctional 3-deoxy- 35.7 53 0.0012 29.1 4.0 92 4-103 170-265 (360)
58 PRK13028 tryptophan synthase s 35.5 66 0.0014 29.0 4.6 61 89-178 106-166 (402)
59 TIGR01274 ACC_deam 1-aminocycl 34.8 1.1E+02 0.0025 26.3 5.9 45 84-137 57-102 (337)
60 cd05014 SIS_Kpsf KpsF-like pro 34.7 67 0.0015 23.0 3.9 20 3-22 61-80 (128)
61 PRK06260 threonine synthase; V 34.3 82 0.0018 28.0 5.1 63 62-135 84-147 (397)
62 PLN00011 cysteine synthase 33.9 1.5E+02 0.0033 25.5 6.5 66 62-138 33-104 (323)
63 PF10281 Ish1: Putative stress 33.9 32 0.00068 20.1 1.6 13 82-94 7-19 (38)
64 PRK06110 hypothetical protein; 33.7 1.1E+02 0.0024 26.2 5.7 65 63-137 38-104 (322)
65 PRK00912 ribonuclease P protei 32.8 54 0.0012 26.8 3.4 28 3-30 154-181 (237)
66 PRK07409 threonine synthase; V 32.4 1.1E+02 0.0024 26.6 5.5 64 62-136 47-111 (353)
67 PRK14045 1-aminocyclopropane-1 31.8 1.3E+02 0.0028 26.0 5.7 41 86-135 63-104 (329)
68 PRK05638 threonine synthase; V 31.0 1.6E+02 0.0034 26.6 6.4 64 62-136 81-145 (442)
69 PLN02970 serine racemase 30.7 1.1E+02 0.0023 26.5 5.0 65 62-136 43-108 (328)
70 cd05008 SIS_GlmS_GlmD_1 SIS (S 29.8 85 0.0018 22.4 3.7 20 3-22 60-79 (126)
71 PRK13803 bifunctional phosphor 29.5 94 0.002 29.5 4.8 61 89-178 314-374 (610)
72 PRK06352 threonine synthase; V 29.5 1.1E+02 0.0023 26.8 4.9 63 62-135 44-107 (351)
73 cd04795 SIS SIS domain. SIS (S 29.2 75 0.0016 20.8 3.1 20 3-22 61-80 (87)
74 TIGR03569 NeuB_NnaB N-acetylne 28.6 1.7E+02 0.0036 25.7 5.9 19 4-22 77-95 (329)
75 PRK13600 putative ribosomal pr 27.9 71 0.0015 22.4 2.8 18 5-22 44-61 (84)
76 PRK10886 DnaA initiator-associ 27.2 95 0.0021 25.0 3.9 20 3-22 123-142 (196)
77 PRK03910 D-cysteine desulfhydr 27.0 1.7E+02 0.0036 25.2 5.6 44 86-138 57-101 (331)
78 COG0241 HisB Histidinol phosph 25.9 1.5E+02 0.0033 23.8 4.7 45 113-175 39-87 (181)
79 COG1087 GalE UDP-glucose 4-epi 25.9 75 0.0016 27.9 3.2 39 95-142 2-40 (329)
80 TIGR02991 ectoine_eutB ectoine 25.7 1.9E+02 0.0041 24.8 5.7 56 73-138 46-102 (317)
81 KOG1371 UDP-glucose 4-epimeras 25.3 89 0.0019 27.7 3.5 43 93-144 2-44 (343)
82 KOG3406 40S ribosomal protein 25.1 97 0.0021 23.6 3.3 38 3-45 63-102 (134)
83 TIGR00260 thrC threonine synth 25.1 1.1E+02 0.0024 26.1 4.1 64 62-136 40-104 (328)
84 COG0084 TatD Mg-dependent DNas 23.9 1.2E+02 0.0027 25.5 4.1 94 6-140 115-211 (256)
85 cd00755 YgdL_like Family of ac 23.7 2.9E+02 0.0062 22.8 6.2 17 6-22 117-133 (231)
86 PRK06361 hypothetical protein; 23.6 56 0.0012 26.0 1.9 24 6-29 151-174 (212)
87 cd05005 SIS_PHI Hexulose-6-pho 23.5 1.2E+02 0.0026 23.4 3.8 23 3-25 89-111 (179)
88 TIGR02589 cas_Csd2 CRISPR-asso 23.1 79 0.0017 27.3 2.8 29 99-135 33-63 (284)
89 PRK03670 competence damage-ind 22.9 1.8E+02 0.0038 24.5 4.8 82 83-173 24-105 (252)
90 PRK08813 threonine dehydratase 22.6 2E+02 0.0043 25.4 5.3 67 63-138 50-116 (349)
91 PRK12319 acetyl-CoA carboxylas 22.0 1.1E+02 0.0024 25.8 3.5 24 3-26 85-108 (256)
92 PRK08638 threonine dehydratase 21.4 2E+02 0.0043 25.0 5.0 65 63-138 44-110 (333)
93 TIGR01127 ilvA_1Cterm threonin 21.3 1.9E+02 0.0042 25.2 5.0 65 63-137 17-82 (380)
94 TIGR01832 kduD 2-deoxy-D-gluco 20.8 96 0.0021 24.6 2.8 17 83-100 20-36 (248)
95 PRK06450 threonine synthase; V 20.6 2.6E+02 0.0057 24.3 5.7 63 63-136 67-130 (338)
96 TIGR03586 PseI pseudaminic aci 20.6 3E+02 0.0066 24.1 6.0 18 5-22 79-96 (327)
97 TIGR01552 phd_fam prevent-host 20.6 1.6E+02 0.0034 17.8 3.2 21 3-24 9-29 (52)
98 TIGR00441 gmhA phosphoheptose 20.2 1.7E+02 0.0036 22.2 3.9 20 3-22 93-112 (154)
99 TIGR03127 RuMP_HxlB 6-phospho 20.2 1.6E+02 0.0035 22.5 3.9 20 3-22 86-105 (179)
No 1
>PLN02743 nicotinamidase
Probab=100.00 E-value=3.7e-40 Score=274.29 Aligned_cols=181 Identities=70% Similarity=1.287 Sum_probs=160.9
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCCCCCCCCccCCCCCCccccccccccCCCceEEEeCCccccccccccCCC
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDG 80 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~~~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~~~~~~~~ 80 (187)
+++++++|+++||++|+||||+++.|.++..+..||+||+.||+|++++++|.+.+++....++.|+++|+|+++....+
T Consensus 59 iv~~i~~Ll~~aR~~g~pVI~~~d~h~~~~~~~~~~~h~v~Gt~g~ei~~~L~p~~~~~~v~v~~K~~~saF~~t~~~~~ 138 (239)
T PLN02743 59 MVDESARLAREFCERKWPVLAFLDSHHPDKPEHPYPPHCIVGTGEENLVPALQWLENDPNVTLRRKDCIDGFVGAIEKDG 138 (239)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeCccCCCccccCCCCccCCCCcccccchhhCCCCCCceEEEEecCccccccccccccC
Confidence 36789999999999999999999999877666789999999999999999999865443334778999999998633222
Q ss_pred cchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCCcHHHH
Q 029834 81 SNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFM 160 (187)
Q Consensus 81 ~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~~~~~~ 160 (187)
++.|.++|+++||++|+|+|++||+||.||.+|+++|+++||..|+.+|+|++|||++++.+.|.+..++++..|+++.+
T Consensus 139 t~~L~~~Lr~~gI~~liv~Gv~T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~at~d~~~h~~~~~~~~~~~~~~~~ 218 (239)
T PLN02743 139 SNVFVDWVNNNKIKVILVVGICTDICVLDFVASALSARNHGILPPLEDVVVYSRGCATYDLPLHVAKTIKGALAHPQELM 218 (239)
T ss_pred ccHHHHHHHHCCCCEEEEEEeCcchhccChHHHHHHHHHcCCCCCCceEEEeCCccccCChhhhhhhhhccccCCCHHHH
Confidence 23489999999999999999999999998889999999999966777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEeecccch
Q 029834 161 HHVGLYMAKERGAKIANQLSF 181 (187)
Q Consensus 161 h~~~l~~~~~~~~~v~~~~~~ 181 (187)
|..+|++|+.+|++|++.+.|
T Consensus 219 ~~~~~~~~~~~~~~v~~~~~~ 239 (239)
T PLN02743 219 HHMGLYMAKGRGAKVVSKVSF 239 (239)
T ss_pred HHHHHHHHHhCCcEeeeeecC
Confidence 999999999999999987653
No 2
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=100.00 E-value=6.9e-33 Score=226.00 Aligned_cols=157 Identities=24% Similarity=0.432 Sum_probs=133.6
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCC--------------------CCCCCCccCCCCCCccccccccccCCCc
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPE--------------------DPYPTHCIAGTHESNLVPALQWIEKEPN 60 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~--------------------~~~p~hc~~gt~G~~l~~~L~~~~~~~~ 60 (187)
++++|++|+++||++|+||||++++|.+++.+ ..||+||++|++|+++.++|.+.+ .
T Consensus 28 ~v~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~g~el~~~l~~~~---~ 104 (212)
T PRK11609 28 TIDVANRLIDWCQSRGIPVIASQDWHPANHGSFASNHGAEPGTQGELDGLPQTWWPDHCVQNSEGAALHPLLNQKA---I 104 (212)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeccCCCCCcchhhcCCCCCccccccCCcccccCcccccCCCCcCccChhhcccC---C
Confidence 46899999999999999999999999765422 148999999999999999998765 3
Q ss_pred eEEEeCC------ccccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCC
Q 029834 61 VTIRRKD------CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSA 134 (187)
Q Consensus 61 ~~vi~K~------~~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~D 134 (187)
+.++.|+ +||+|+++.. ...|+|..+|+++||++|||+|++|++||. +|+++|+++|| +|+|++|
T Consensus 105 d~vi~K~~~~~~~~~SaF~~~~~-~~~T~L~~~L~~~gi~~lii~G~~T~~CV~---~Ta~dA~~~gy-----~v~v~~D 175 (212)
T PRK11609 105 DAVFHKGENPLIDSYSAFFDNGH-RQKTALDDWLREHGITELIVMGLATDYCVK---FTVLDALALGY-----QVNVITD 175 (212)
T ss_pred CEEEECCCCCCCcccccccCCCC-CCCccHHHHHHHcCCCEEEEEEeccCHHHH---HHHHHHHHCCC-----EEEEEee
Confidence 5688996 7999984100 012599999999999999999999999999 99999999999 9999999
Q ss_pred ccccCCccchhhhhcccccCCcHHHHHHHHHHHHHHcCcEeecccchhhh
Q 029834 135 ACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQ 184 (187)
Q Consensus 135 a~~s~~~~~~~a~~~~~~~~~~~~~~h~~~l~~~~~~~~~v~~~~~~~~~ 184 (187)
||++++...+ .|+.+|..|...|++|++++++.++
T Consensus 176 a~a~~~~~~~---------------~~~~al~~~~~~~~~v~t~~~~~~~ 210 (212)
T PRK11609 176 GCRGVNLQPQ---------------DSAHAFMEMSAAGATLYTLADWEET 210 (212)
T ss_pred ccCCCCCCch---------------hHHHHHHHHHHCCCEEEEHHHHHhh
Confidence 9999974322 3678899999999999999998764
No 3
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=99.97 E-value=3.1e-31 Score=211.12 Aligned_cols=147 Identities=16% Similarity=0.276 Sum_probs=130.0
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCC-CCC----C--CCccCCCCCCccccccccccCCCceEEEeCCcccccc
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPE-DPY----P--THCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYF 73 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~-~~~----p--~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~ 73 (187)
+++++++|++.||++|+||||+++.|.++..+ ..| | .+|..|++|+++.++|.+.+ .+.++.|.+||+|+
T Consensus 25 ~~~ni~~l~~~ar~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~l~~~~---~~~v~~K~~~saF~ 101 (179)
T cd01015 25 ALENVQRLLAAARAAGVPVIHTTVVYDPDGADGGLWARKVPAMSDLVEGSPLAAICDELAPQE---DEMVLVKKYASAFF 101 (179)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeeECCccCccchhhhcccccccccCCCCccccccccCCCC---CCEEEecCccCCcc
Confidence 46899999999999999999999888665433 223 2 35778999999999999875 35789999999999
Q ss_pred ccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhccccc
Q 029834 74 GSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGAL 153 (187)
Q Consensus 74 ~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~ 153 (187)
++ +|..+|+++|+++|||+|++||+||+ +|+++|+++|| +|+|++|||++++++
T Consensus 102 ~t-------~L~~~L~~~gi~~vvi~G~~t~~CV~---~Ta~~A~~~Gy-----~v~vv~Da~a~~~~~----------- 155 (179)
T cd01015 102 GT-------SLAATLTARGVDTLIVAGCSTSGCIR---ATAVDAMQHGF-----RPIVVRECVGDRAPA----------- 155 (179)
T ss_pred CC-------cHHHHHHHcCCCEEEEeeecccHhHH---HHHHHHHHCCC-----eEEEeeccccCCCHH-----------
Confidence 85 99999999999999999999999999 99999999999 999999999998764
Q ss_pred CCcHHHHHHHHHHHHHHcCcEeecccchh
Q 029834 154 AHPQEFMHHVGLYMAKERGAKIANQLSFS 182 (187)
Q Consensus 154 ~~~~~~~h~~~l~~~~~~~~~v~~~~~~~ 182 (187)
.|+.+|..|...++.|+++.++.
T Consensus 156 ------~h~~al~~l~~~~~~v~~t~~~~ 178 (179)
T cd01015 156 ------PHEANLFDIDNKYGDVVSTDDAL 178 (179)
T ss_pred ------HHHHHHHHHHhhceeeccHHHHh
Confidence 37899999999999999998875
No 4
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=99.97 E-value=4.3e-31 Score=213.51 Aligned_cols=145 Identities=28% Similarity=0.430 Sum_probs=125.0
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCC-------------------CCCCCCccCCCCCCccccccccccCCCce
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPE-------------------DPYPTHCIAGTHESNLVPALQWIEKEPNV 61 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~-------------------~~~p~hc~~gt~G~~l~~~L~~~~~~~~~ 61 (187)
++++|++|++++| |+||||++++|.+++.. ..||+||++||+|++++|+|.+.+ .+
T Consensus 27 ~v~~i~~l~~~ar--g~~Vi~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~g~~i~~~l~~~~---~d 101 (196)
T cd01011 27 IVPLINALLSLFQ--YDLVVATQDWHPANHASFASNHPGQMPFITLPPGPQVLWPDHCVQGTPGAELHPGLPVPD---ID 101 (196)
T ss_pred HHHHHHHHHHhcC--CCEEEEecCCCCCCCcChhhcCCCCCCccccCCCCcCcCCCccCCCCCCCccCcccccCC---CC
Confidence 4789999999999 99999999999764421 259999999999999999998754 35
Q ss_pred EEEeCC------ccccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCc
Q 029834 62 TIRRKD------CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 135 (187)
Q Consensus 62 ~vi~K~------~~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da 135 (187)
.++.|+ +||+|++..+ .++|+|.++|+++|+++|+|||++||+||. +|+++|+++|| +|+|++||
T Consensus 102 ~vi~K~~~~~~~~~saF~~~~~-~~~t~L~~~L~~~~i~~lii~G~~t~~CV~---~T~~~a~~~g~-----~v~v~~Da 172 (196)
T cd01011 102 LIVRKGTNPDIDSYSAFFDNDR-RSSTGLAEYLRERGIDRVDVVGLATDYCVK---ATALDALKAGF-----EVRVLEDA 172 (196)
T ss_pred EEEECCCCCCCceeeeeecCCc-cCchhHHHHHHHCCCCEEEEEEecccHHHH---HHHHHHHHCCC-----EEEEeccc
Confidence 789994 6899987211 122499999999999999999999999999 99999999999 99999999
Q ss_pred cccCCccchhhhhcccccCCcHHHHHHHHHHHHHHcCcEee
Q 029834 136 CATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIA 176 (187)
Q Consensus 136 ~~s~~~~~~~a~~~~~~~~~~~~~~h~~~l~~~~~~~~~v~ 176 (187)
|++++++. |+.+|..|+..|++|+
T Consensus 173 ~~~~~~~~-----------------~~~al~~~~~~G~~i~ 196 (196)
T cd01011 173 CRAVDPET-----------------IERAIEEMKEAGVVLV 196 (196)
T ss_pred cCCCCHHH-----------------HHHHHHHHHHccCEEC
Confidence 99998753 6889999999999874
No 5
>PLN02621 nicotinamidase
Probab=99.97 E-value=6.4e-31 Score=212.67 Aligned_cols=148 Identities=17% Similarity=0.259 Sum_probs=130.4
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCC----CCCCCCC-ccCCCCCCcccccccc-ccCCCceEEEeCCccccccc
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKP----EDPYPTH-CIAGTHESNLVPALQW-IEKEPNVTIRRKDCFDGYFG 74 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~----~~~~p~h-c~~gt~G~~l~~~L~~-~~~~~~~~vi~K~~~saf~~ 74 (187)
+++++++|++.+|++|+||||++++|.++.. ...||.+ |..|++|++++++|++ .+ .+.++.|++||+|++
T Consensus 39 ~v~~i~~Ll~~ar~~~~pVi~t~~~~~~~~~~~~~~~~~~~~~~~~gs~g~~i~~~L~~~~~---~~~vi~K~~~saf~~ 115 (197)
T PLN02621 39 ILPALLTTIDLCRRASIPVFFTRHSHKSPSDYGMLGEWWDGDLILDGTTEAELMPEIGRVTG---PDEVVEKSTYSAFYN 115 (197)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeccCCCcchhhhhhhhcCCccccCCCCccccchhccCCCC---CCEEEECCCcCCCCC
Confidence 3689999999999999999999988854321 1246666 9999999999999988 33 356889999999998
Q ss_pred cccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccC
Q 029834 75 SIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALA 154 (187)
Q Consensus 75 ~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~ 154 (187)
+ +|.++|+++|+++|||+|++||+||. +|+++|+++|| +|+|++|||++++++.
T Consensus 116 t-------~L~~~L~~~gi~~lvi~Gv~T~~CV~---~Ta~~a~~~gy-----~v~v~~Da~as~~~~~----------- 169 (197)
T PLN02621 116 T-------RLEERLRKIGVKEVIVTGVMTNLCCE---TTAREAFVRGF-----RVFFSTDATATANEEL----------- 169 (197)
T ss_pred C-------cHHHHHHHCCCCEEEEEecccchhHH---HHHHHHHHCCC-----EEEEeccccCCCCHHH-----------
Confidence 5 99999999999999999999999999 99999999999 9999999999997643
Q ss_pred CcHHHHHHHHHHHHHHcCcEeecccchhh
Q 029834 155 HPQEFMHHVGLYMAKERGAKIANQLSFSE 183 (187)
Q Consensus 155 ~~~~~~h~~~l~~~~~~~~~v~~~~~~~~ 183 (187)
|+.+|..|+..|+.|+++.++..
T Consensus 170 ------h~~al~~~~~~~~~v~~~~~~~~ 192 (197)
T PLN02621 170 ------HEATLKNLAYGFAYLVDCDRLEA 192 (197)
T ss_pred ------HHHHHHHHHhhceEeecHHHHHH
Confidence 78999999999999999988764
No 6
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=99.97 E-value=5.3e-31 Score=207.11 Aligned_cols=145 Identities=29% Similarity=0.553 Sum_probs=129.1
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCC-----CCCCCCccCCCCCCccccccccccCCCceEEEeCCcccccccc
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPE-----DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGS 75 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~-----~~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~~~ 75 (187)
+++++++|++++|++|+||||+++.|...... ..|+.+|..|++|++++++|.+.+ .+.+|.|+++|+|+++
T Consensus 25 ~i~~i~~l~~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~---~~~vi~K~~~saf~~t 101 (174)
T PF00857_consen 25 IIPNINRLLDAARAAGVPVIHTRDIHDSPHWSGPFEPKPWPPHCIPGSPGAELVPELAPQP---GDPVIEKNRYSAFFGT 101 (174)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEESBSTTTTTTSGGHSCHTSCSBTTSGGGSBHGGGHCHT---TSEEEEESSSSTTTTS
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeeecccccccccccccccccccCCCCccceeeEeeccc---ccceEEeecccccccc
Confidence 36899999999999999999999988722222 357899999999999999999986 3678999999999985
Q ss_pred ccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCC
Q 029834 76 IEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAH 155 (187)
Q Consensus 76 ~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~ 155 (187)
+|.++|+++|+++|+|+|++|++||. +|+++|+++|| +|+|++|||++++++.
T Consensus 102 -------~L~~~L~~~gi~~vil~G~~t~~CV~---~Ta~~a~~~g~-----~v~v~~Da~~~~~~~~------------ 154 (174)
T PF00857_consen 102 -------DLDEILRKRGIDTVILCGVATDVCVL---ATARDAFDRGY-----RVIVVEDACASYSPEA------------ 154 (174)
T ss_dssp -------SHHHHHHHTTESEEEEEEESTTTHHH---HHHHHHHHTT------EEEEEEEEEEBSSHHH------------
T ss_pred -------cccccccccccceEEEcccccCcEEe---hhHHHHHHCCC-----EEEEEChhhcCCCHHH------------
Confidence 99999999999999999999999999 99999999999 9999999999998653
Q ss_pred cHHHHHHHHHHHHHHcCcEeecccc
Q 029834 156 PQEFMHHVGLYMAKERGAKIANQLS 180 (187)
Q Consensus 156 ~~~~~h~~~l~~~~~~~~~v~~~~~ 180 (187)
|+.+|+.|+.+|+.|+++++
T Consensus 155 -----h~~~l~~l~~~~~~v~t~~~ 174 (174)
T PF00857_consen 155 -----HEAALEELRKRGAEVITSAE 174 (174)
T ss_dssp -----HHHHHHHHHHHTSEEE-HHH
T ss_pred -----HHHHHHHHHhCCCEEEeCCC
Confidence 79999999999999999864
No 7
>PRK11440 putative hydrolase; Provisional
Probab=99.97 E-value=1.2e-30 Score=209.16 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=129.2
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCC-------CCCCCCccCCCCCCccccccccccCCCceEEEeCCcccccc
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPE-------DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYF 73 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~-------~~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~ 73 (187)
+++++++|+++||++|+||||+++.|.++..+ ...++||+.|++ +++.++|.+.++ +.++.|+++|+|+
T Consensus 33 ~i~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~---d~vi~K~~~saF~ 108 (188)
T PRK11440 33 VVARAARLAAKFRASGSPVVLVRVGWSADYAEALKQPVDAPSPAKVLPENW-WQHPAALGKTDS---DIEVTKRQWGAFY 108 (188)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecccCCchhhhccCcccccccccccCCcc-cccCcccCCCCC---CEEEecCCcCCCC
Confidence 47899999999999999999998877665433 124577888877 799999988763 5789999999999
Q ss_pred ccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhccccc
Q 029834 74 GSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGAL 153 (187)
Q Consensus 74 ~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~ 153 (187)
+| +|..+|+++|+++|||+|+.|++||. +|+++|+++|| +|+|++|||++++++.
T Consensus 109 ~T-------~L~~~L~~~gi~~lii~Gv~T~~CV~---~Ta~~A~~~gy-----~v~vv~Da~as~~~~~---------- 163 (188)
T PRK11440 109 GT-------DLELQLRRRGIDTIVLCGISTNIGVE---STARNAWELGF-----NLVIAEDACSAASAEQ---------- 163 (188)
T ss_pred CC-------CHHHHHHHCCCCEEEEeeechhHHHH---HHHHHHHHCCC-----EEEEechhhcCCCHHH----------
Confidence 95 99999999999999999999999999 99999999999 9999999999997653
Q ss_pred CCcHHHHHHHHHHHHHHcCcEeecccchhh
Q 029834 154 AHPQEFMHHVGLYMAKERGAKIANQLSFSE 183 (187)
Q Consensus 154 ~~~~~~~h~~~l~~~~~~~~~v~~~~~~~~ 183 (187)
|+.+|..+..+++.|.+++++++
T Consensus 164 -------h~~al~~~~~~~a~v~~~~~~~~ 186 (188)
T PRK11440 164 -------HQNSMNHIFPRIARVRSVEEILN 186 (188)
T ss_pred -------HHHHHHHHHhheeEEeeHHHHHh
Confidence 78889999889999999988864
No 8
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=99.97 E-value=1.4e-30 Score=214.82 Aligned_cols=150 Identities=20% Similarity=0.248 Sum_probs=130.5
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCC-----C-----------------CCCCCccCCCCCCccccccccccCC
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPE-----D-----------------PYPTHCIAGTHESNLVPALQWIEKE 58 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~-----~-----------------~~p~hc~~gt~G~~l~~~L~~~~~~ 58 (187)
+++++++|+++||++|+||||+++.|.+++.+ . .++.+|..|++|++++++|.+.+
T Consensus 47 ~i~~i~~l~~~aR~~g~pVI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~p~~-- 124 (226)
T TIGR03614 47 VIENIKKAVTAARAAGIQVIYFQNGWDNDYVEAGGPGSPNWHKSNALKTMRKRPELQGKLLAKGTWDYELVDELQPQP-- 124 (226)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecccChhhhhccCCCcccccccccccccccCcccccceeecCCCCcccCcccCCCC--
Confidence 36899999999999999999999888654211 0 01346889999999999999875
Q ss_pred CceEEEeCCccccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcccc
Q 029834 59 PNVTIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACAT 138 (187)
Q Consensus 59 ~~~~vi~K~~~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s 138 (187)
.+.++.|+++|+|++| +|..+|+++||++|||+|++||+||. +|+++|+++|| +|+|++|||++
T Consensus 125 -~d~vi~K~~~saF~~T-------~L~~~Lr~~gI~~lvi~Gv~T~~CV~---sTar~A~~~Gy-----~v~vv~Da~a~ 188 (226)
T TIGR03614 125 -GDIVLPKPRYSGFFNT-------PLDSMLRARGIRNLVFTGIATNVCVE---STLRDGFHLEY-----FGVVLEDATHQ 188 (226)
T ss_pred -CCEEEeCCCcCCCCCC-------CHHHHHHHCCCCEEEEeccCccHhHH---HHHHHHHHCCC-----EEEEechhccC
Confidence 3578999999999995 99999999999999999999999999 99999999999 99999999998
Q ss_pred CCccchhhhhcccccCCcHHHHHHHHHHHHHHcCcEeecccchhhh
Q 029834 139 FDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFSEQ 184 (187)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~h~~~l~~~~~~~~~v~~~~~~~~~ 184 (187)
.+.+ .+|+.+|..|...++.|.+++++.+.
T Consensus 189 ~~~~----------------~~h~~~l~~l~~~~~~v~~~~~~~~~ 218 (226)
T TIGR03614 189 AGPD----------------FMQKAALYNIETFFGWVSDVADFCGT 218 (226)
T ss_pred CCch----------------HHHHHHHHHHHhHheeeecHHHHHHH
Confidence 8653 24899999999999999999887764
No 9
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=99.97 E-value=3.5e-30 Score=209.30 Aligned_cols=144 Identities=22% Similarity=0.262 Sum_probs=126.7
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCC-----CCCCCCccCCCCCCccccccccccCCCceEEEeCCcccccccc
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPE-----DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGS 75 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~-----~~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~~~ 75 (187)
+++++++|+++||++|+||||+++.|...... ..|++++..|++|++++++|.+.+ .+.++.|.++|+|+++
T Consensus 55 ~~~~i~~li~~ar~~g~pVi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~vi~K~~~saF~~T 131 (203)
T cd01013 55 LIANIARLRDWCRQAGIPVVYTAQPGNQTPEQRALLNDFWGPGLTASPEETKIVTELAPQP---DDTVLTKWRYSAFKRS 131 (203)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCCChhHHHHHHHHhhccCCCCCCccccccccCCCC---CCEEEeCCCcCCcCCC
Confidence 36899999999999999999997665432211 257888888899999999998865 3578999999999995
Q ss_pred ccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCC
Q 029834 76 IEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAH 155 (187)
Q Consensus 76 ~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~ 155 (187)
+|..+|+++|+++|+|+|+.||+||. +|+++|+++|| +|+|++|||++++++.
T Consensus 132 -------~L~~~Lr~~gi~~lii~Gv~T~~CV~---~Ta~~A~~~Gy-----~v~vv~Da~as~~~~~------------ 184 (203)
T cd01013 132 -------PLLERLKESGRDQLIITGVYAHIGCL---STAVDAFMRDI-----QPFVVADAIADFSLEE------------ 184 (203)
T ss_pred -------CHHHHHHHcCCCEEEEEEeccChhHH---HHHHHHHHCCC-----eEEEeccccCCCCHHH------------
Confidence 99999999999999999999999999 99999999999 9999999999998643
Q ss_pred cHHHHHHHHHHHHHHcCcEeeccc
Q 029834 156 PQEFMHHVGLYMAKERGAKIANQL 179 (187)
Q Consensus 156 ~~~~~h~~~l~~~~~~~~~v~~~~ 179 (187)
|+.+|..|..+++.|++++
T Consensus 185 -----h~~al~~l~~~~a~v~~t~ 203 (203)
T cd01013 185 -----HRMALKYAATRCAMVVSTD 203 (203)
T ss_pred -----HHHHHHHHHhheeEeeecC
Confidence 7999999999999999874
No 10
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=99.96 E-value=2.8e-29 Score=205.48 Aligned_cols=145 Identities=24% Similarity=0.345 Sum_probs=126.0
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCC-----------------CCCCCCccCCCCCCccccccccccCCCceEE
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPE-----------------DPYPTHCIAGTHESNLVPALQWIEKEPNVTI 63 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~-----------------~~~p~hc~~gt~G~~l~~~L~~~~~~~~~~v 63 (187)
++++|++|++++ .+.+|+|++++|++.+.. ..||+||+.|++|+++.|+|.+.+ .+.+
T Consensus 38 iv~~i~~l~~~~--~~~~Vi~~~d~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~gs~g~~i~~~L~~~~---~~~v 112 (212)
T PTZ00331 38 VIPVINQVRQSH--HFDLVVATQDWHPPNHISFASNHGKPKILPDGTTQGLWPPHCVQGTKGAQLHKDLVVER---IDII 112 (212)
T ss_pred HHHHHHHHHHhc--CCCEEEEecCcCCCCCcChhhcCCCCCcccCCCccCCCcccccCCCCcccCChhhccCC---CcEE
Confidence 367888888843 456799999999765431 269999999999999999998765 3578
Q ss_pred EeCC------ccccc-----cccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEe
Q 029834 64 RRKD------CFDGY-----FGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVY 132 (187)
Q Consensus 64 i~K~------~~saf-----~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv 132 (187)
+.|+ +||+| +++ +|.++|++.|+++|||||++||+||+ +|+++|.++|| +|+|+
T Consensus 113 i~K~~~~~~~~~saF~~~~~~~t-------~L~~~L~~~gi~~lvi~G~~t~~CV~---~Ta~~a~~~g~-----~v~vv 177 (212)
T PTZ00331 113 IRKGTNRDVDSYSAFDNDKGSKT-------GLAQILKAHGVRRVFICGLAFDFCVL---FTALDAVKLGF-----KVVVL 177 (212)
T ss_pred EECCCCCCCceecCccCCCCCCc-------hHHHHHHHCCCCEEEEEEeccCHHHH---HHHHHHHHCCC-----EEEEe
Confidence 8997 69999 774 99999999999999999999999999 99999999999 99999
Q ss_pred CCccccCCccchhhhhcccccCCcHHHHHHHHHHHHHHcCcEeecccchh
Q 029834 133 SAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQLSFS 182 (187)
Q Consensus 133 ~Da~~s~~~~~~~a~~~~~~~~~~~~~~h~~~l~~~~~~~~~v~~~~~~~ 182 (187)
+|||++++++. |+.+|+.|+..|+.|+++++++
T Consensus 178 ~Da~~~~~~~~-----------------~~~al~~~~~~g~~v~~~~~~~ 210 (212)
T PTZ00331 178 EDATRAVDPDA-----------------ISKQRAELLEAGVILLTSSDLV 210 (212)
T ss_pred CcCccCCCHHH-----------------HHHHHHHHHHCCCEEEeHHHhh
Confidence 99999998754 6889999999999999988775
No 11
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=3.3e-29 Score=202.45 Aligned_cols=129 Identities=26% Similarity=0.361 Sum_probs=113.4
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCCCC----------CCCCccCCCCCCccccccccccCC---CceEEEeCC
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPEDP----------YPTHCIAGTHESNLVPALQWIEKE---PNVTIRRKD 67 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~~~----------~p~hc~~gt~G~~l~~~L~~~~~~---~~~~vi~K~ 67 (187)
+++++++|++.+|+.|+||||++++|.+++.... ||.||..|++|++++++|.+.... ....++.|.
T Consensus 34 i~~~i~~l~~~ar~~~~~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~h~~~g~~g~~~~~~l~~~~~~~~~~~~~~~~k~ 113 (205)
T COG1335 34 IIPNIAALVDAARAAGQPVIATQDWHPADISSLAGSPESSKLFPWPRHDVKGTPGAELLGELPPAVDDAQLVPEDVIFKK 113 (205)
T ss_pred hHHHHHHHHHHHHHcCCeEEEecccCCCcccccccccccccCCCCcchhcCCCcchhhccccccccccccccceeeeccc
Confidence 4789999999999999999999999998653322 889999999999999999976530 013566776
Q ss_pred -ccccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccch
Q 029834 68 -CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTH 144 (187)
Q Consensus 68 -~~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~ 144 (187)
+||+|++| +|..+|+++|+++|+|||++||+||+ +|+++|+++|| +|+|++|||++++.+.+
T Consensus 114 ~~~saF~~T-------~L~~~Lr~~~i~~l~v~G~~td~CV~---~T~~~A~~~gy-----~v~v~~da~~~~~~~~~ 176 (205)
T COG1335 114 HGYSAFAGT-------DLDDILRNLGIDTVVVCGIATDICVL---ATARDAFDLGY-----QVTLVEDATAGSSLDRS 176 (205)
T ss_pred cccCcccCC-------CHHHHHHHCCCCEEEEeeeehhHHHH---HHHHHHHHCCC-----eEEEehhhcccCCCChH
Confidence 99999995 99999999999999999999999999 99999999999 99999999999996543
No 12
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=99.96 E-value=2.2e-28 Score=190.18 Aligned_cols=126 Identities=33% Similarity=0.594 Sum_probs=114.1
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCC---CCCCCCccCCCCCCccccccccccCCCceEEEeCCcccccccccc
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPE---DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIE 77 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~---~~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~~~~~ 77 (187)
++++++++++++|++|+||||+++.+.++..+ ..|+.||..|++|+++.++|.+.+ .+.++.|+++|+|+++
T Consensus 25 ~~~~i~~l~~~ar~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~l~~~~---~~~~i~K~~~saf~~t-- 99 (161)
T cd00431 25 LVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAELLWPPHCVKGTEGAELVPELAPLP---DDLVIEKTRYSAFYGT-- 99 (161)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEeeecCCCcccccccCcccccCCCchhhcchhhCCCC---CCEEEecCCcCCccCC--
Confidence 46899999999999999999998888766543 258999999999999999997765 3578999999999985
Q ss_pred CCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccch
Q 029834 78 DDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTH 144 (187)
Q Consensus 78 ~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~ 144 (187)
+|.++|++.|+++|+|+|++|++||+ +|+++|+++|| +|+|++|||++++.+.|
T Consensus 100 -----~l~~~L~~~~i~~vil~G~~t~~CV~---~T~~~a~~~G~-----~v~vi~Da~~s~~~~~~ 153 (161)
T cd00431 100 -----DLDELLRERGIDTLVVCGIATDICVL---ATARDALDLGY-----RVIVVEDACATRDEEDH 153 (161)
T ss_pred -----CHHHHHHHCCCCEEEEEecCcChhHH---HHHHHHHHCCC-----EEEEehhhcccCChHHH
Confidence 99999999999999999999999999 99999999999 99999999999998653
No 13
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=99.95 E-value=2.2e-27 Score=184.98 Aligned_cols=130 Identities=27% Similarity=0.461 Sum_probs=112.3
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCCCCCCCCccCCCCCCccccccccccCCCceEEEeCCccccccccccCCC
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDG 80 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~~~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~~~~~~~~ 80 (187)
+++++++|++++|++|+||||+++.|.++.+ +.+|++|+++.|+|.+.+ .+.+++|+++|+|+++
T Consensus 24 ~v~~i~~li~~~r~~~~~Vi~~~~~~~~~~~-------~~~gt~g~~l~~~l~~~~---~d~v~~K~~~saf~~t----- 88 (155)
T cd01014 24 ALENIAALIAAARAAGIPVIHVRHIDDEGGS-------FAPGSEGWEIHPELAPLE---GETVIEKTVPNAFYGT----- 88 (155)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEeccCCCCC-------CCCCCCccccchhhcCCC---CCEEEeCCCCCCcCCC-----
Confidence 4789999999999999999999776654321 567999999999998754 3578999999999985
Q ss_pred cchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCCcHHHH
Q 029834 81 SNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFM 160 (187)
Q Consensus 81 ~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~~~~~~ 160 (187)
+|.++|+++|+++|+|+|++||+||. +|+++|+++|| +|+|++|||++++.+.|. ....++++
T Consensus 89 --~l~~~L~~~gi~~viv~G~~td~CV~---~Ta~~a~~~g~-----~v~vi~Da~~s~~~~~~~-------~~~~~~~~ 151 (155)
T cd01014 89 --DLEEWLREAGIDHLVICGAMTEMCVD---TTVRSAFDLGY-----DVTVVADACATFDLPDHG-------GVLSAEEI 151 (155)
T ss_pred --CHHHHHHHCCCCEEEEEeeccchhHH---HHHHHHHHCCC-----cEEEecccccCCCcccCC-------ceeCHHHH
Confidence 99999999999999999999999999 99999999999 999999999999998773 12356666
Q ss_pred HH
Q 029834 161 HH 162 (187)
Q Consensus 161 h~ 162 (187)
|.
T Consensus 152 ~~ 153 (155)
T cd01014 152 HA 153 (155)
T ss_pred Hh
Confidence 54
No 14
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=99.95 E-value=1.6e-27 Score=186.13 Aligned_cols=132 Identities=24% Similarity=0.378 Sum_probs=115.7
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCCCCCCCCccCCCCCCcccccccc-ccCCCceEEEeCCccccccccccCC
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQW-IEKEPNVTIRRKDCFDGYFGSIEDD 79 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~~~~p~hc~~gt~G~~l~~~L~~-~~~~~~~~vi~K~~~saf~~~~~~~ 79 (187)
+++++++|+++||++|+||||+ .|.++ ...+++|+|.+ .+ ++.++.|+++|+|+++
T Consensus 21 ~~~~i~~l~~~ar~~g~pVi~~--~~~~~--------------~~g~~~~~l~~~~~---~~~vi~K~~~saf~~t---- 77 (157)
T cd01012 21 LINNTVKLAKAAKLLDVPVILT--EQYPK--------------GLGPTVPELREVFP---DAPVIEKTSFSCWEDE---- 77 (157)
T ss_pred HHHHHHHHHHHHHhcCCCEEEE--eeCCC--------------CCCCchHHHHhhCC---CCCceecccccCcCCH----
Confidence 3689999999999999999999 44321 12278999987 44 3568999999999985
Q ss_pred CcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCCcHHH
Q 029834 80 GSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEF 159 (187)
Q Consensus 80 ~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~~~~~ 159 (187)
+|.++|++.|+++|+|+|++||+||. +|+++|+++|| +|+|++|||++++++.
T Consensus 78 ---~L~~~L~~~gi~~lii~G~~T~~CV~---~Ta~~a~~~g~-----~v~v~~Da~as~~~~~---------------- 130 (157)
T cd01012 78 ---AFRKALKATGRKQVVLAGLETHVCVL---QTALDLLEEGY-----EVFVVADACGSRSKED---------------- 130 (157)
T ss_pred ---HHHHHHHhcCCCEEEEEEeeccHHHH---HHHHHHHHCCC-----EEEEEeeCCCCCCHHH----------------
Confidence 99999999999999999999999999 99999999999 9999999999998653
Q ss_pred HHHHHHHHHHHcCcEeecccchhh
Q 029834 160 MHHVGLYMAKERGAKIANQLSFSE 183 (187)
Q Consensus 160 ~h~~~l~~~~~~~~~v~~~~~~~~ 183 (187)
|+.+|..|+..|+.|+++++++.
T Consensus 131 -h~~al~~~~~~~~~v~~~~~~~~ 153 (157)
T cd01012 131 -HELALARMRQAGAVLTTSESVLF 153 (157)
T ss_pred -HHHHHHHHHHCCCEEeeHHHHHH
Confidence 78999999999999999887654
No 15
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=1.4e-22 Score=160.18 Aligned_cols=147 Identities=19% Similarity=0.230 Sum_probs=127.3
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCC-CC------CCCCCCccCCCCCCccccccccccCCCceEEEeCCcccccc
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNK-PE------DPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYF 73 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~-~~------~~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~ 73 (187)
+|.||.+|-.+|.++|+||+|| .|+... ++ ..|++....+.+...++++|.|.. .+.+..|.+||+|+
T Consensus 56 li~Ni~~Lr~~~~~~giPVvyT--aqp~~qs~~draLL~d~WGpgl~~~p~~~~vv~~l~P~~---~D~vL~kwrYsAF~ 130 (218)
T COG1535 56 LIANIAKLRIWCKQAGIPVVYT--AQPGEQSPEDRALLKDFWGPGLTASPEQQKVVDELAPGA---DDTVLTKWRYSAFH 130 (218)
T ss_pred HHHHHHHHHHHHHHcCCcEEEE--ecCCcCCHHHHHHHHHhcCCCCCCChhhhhhHHhcCCCC---CceEEeeeehhhhh
Confidence 4789999999999999999999 554322 21 258876666667778888888865 46788899999999
Q ss_pred ccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhccccc
Q 029834 74 GSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGAL 153 (187)
Q Consensus 74 ~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~ 153 (187)
.+ +|.++||+.|+++|||||+.+++|+. .|+.+|+.+++ ++++|.|+++.++.+.
T Consensus 131 ~s-------~Llq~lr~~grdQLIItGVyaHigcl---~TA~dAFm~di-----qpfmV~DAlaDfs~~~---------- 185 (218)
T COG1535 131 RS-------PLLQMLREKGRDQLIITGVYAHIGCL---TTATDAFMRDI-----QPFMVADALADFSEEE---------- 185 (218)
T ss_pred cC-------hHHHHHHHcCCCcEEEeehhhhhhhh---hhHHHHHHhcC-----cceeehhhhhhccHHH----------
Confidence 85 99999999999999999999999999 99999999999 9999999999998764
Q ss_pred CCcHHHHHHHHHHHHHHcCcEeecccchhhh
Q 029834 154 AHPQEFMHHVGLYMAKERGAKIANQLSFSEQ 184 (187)
Q Consensus 154 ~~~~~~~h~~~l~~~~~~~~~v~~~~~~~~~ 184 (187)
|..+|..++.+.+.|+++++.+..
T Consensus 186 -------H~msLky~A~r~a~vv~Teell~~ 209 (218)
T COG1535 186 -------HRMSLKYVAGRCARVVMTEELLCA 209 (218)
T ss_pred -------HHHHHHHHhcceeEEeeHHHHhhc
Confidence 799999999999999999988754
No 16
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms]
Probab=99.78 E-value=5.6e-19 Score=139.59 Aligned_cols=128 Identities=18% Similarity=0.286 Sum_probs=103.4
Q ss_pred HHHHHHHHHhhCCCcEEEEeeeCCCCCCC-----------------------------CCCCCCccCCCCCCcccccccc
Q 029834 4 ESARLARAFCDRRLPVMAFLDTHHPNKPE-----------------------------DPYPTHCIAGTHESNLVPALQW 54 (187)
Q Consensus 4 ~i~~li~~~r~~g~pVv~t~d~h~~~~~~-----------------------------~~~p~hc~~gt~G~~l~~~L~~ 54 (187)
+++.|+......=..||+|.|||+-++.. -.||.||++.|||.++.+++--
T Consensus 32 Pi~~lLq~~d~dw~~Vv~TKDwHP~~HiSF~~~h~~~~p~~~~t~~~~~~~d~V~~~~vl~p~HCv~ntwG~d~~~~~~~ 111 (223)
T KOG4003|consen 32 PISDLLQDADRDWHRVVVTKDWHPSRHISFAKNHKDKEPYSTYTYHSPRPGDDVTQEGILWPVHCVKNTWGVDQIMDQVV 111 (223)
T ss_pred cHHHHHHhcccccceEEEecccCcccceehhhhccCCCCCCCCcccCCCcCCchheeeecchhhhhccCCCCCcchhhhh
Confidence 44445444333323599999999876521 0389999999999999999875
Q ss_pred ccCCCceEEEeCC------ccccccccccCCC-cchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcc
Q 029834 55 IEKEPNVTIRRKD------CFDGYFGSIEDDG-SNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLE 127 (187)
Q Consensus 55 ~~~~~~~~vi~K~------~~saf~~~~~~~~-~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~ 127 (187)
.. ...+|.|+ +||+|+..+ +. .|+|...|++.+|+.|+|+|+++|+||. .|+++|...||
T Consensus 112 ~~---~~~~I~KG~D~~~eSYSaF~D~~--GR~kt~L~~~L~k~~Id~V~IAGvA~DICVk---~TaL~A~~~~y----- 178 (223)
T KOG4003|consen 112 TK---HIKIIDKGFDTDRESYSAFHDIW--GRHKTDLNKYLEKHHIDEVYIAGVALDICVK---ATALSAAELGY----- 178 (223)
T ss_pred hh---heeecccCcchhHHHHHHHhhhc--ccchhhHHHHHHHcCCCeEEEeehhhHHHHH---HHHhhHHHhCc-----
Confidence 43 35688898 488887643 22 5789999999999999999999999999 99999999999
Q ss_pred eEEEeCCccccCCccch
Q 029834 128 EVVVYSAACATFDIPTH 144 (187)
Q Consensus 128 ~V~Vv~Da~~s~~~~~~ 144 (187)
+..|+..|+.+.+.+++
T Consensus 179 ~t~vI~E~~~Gsst~si 195 (223)
T KOG4003|consen 179 KTTVILEYTRGSSTPSI 195 (223)
T ss_pred ceeeehhhhccCCCccc
Confidence 99999999999998876
No 17
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]
Probab=99.54 E-value=3.9e-14 Score=110.95 Aligned_cols=129 Identities=23% Similarity=0.308 Sum_probs=103.6
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEeeeCCCCCCCCCCCCCccCCCCCCccccccccccCCCceEEEeCCccccccccccCCC
Q 029834 1 MINESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDG 80 (187)
Q Consensus 1 ~i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~~~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~~~~~~~~ 80 (187)
+|.+..+|++++|-.++|+|.| .|+|.+. | ..+++|.-... -..+.|..||-+..
T Consensus 37 iIs~~~rLl~aaril~vP~ivT--EqYP~gL-------------G-~TV~eLd~~g~---~~~~~KT~FSM~~p------ 91 (201)
T KOG4044|consen 37 IISVTTRLLAAARILQVPVIVT--EQYPEGL-------------G-KTVPELDIEGL---KLNLSKTKFSMVLP------ 91 (201)
T ss_pred HHHHHHHHHHhhhhhCCcEEee--ccccccc-------------c-ccchhhchhhh---cccccccceeeeCc------
Confidence 4677899999999999999999 4443322 1 33666653321 12478999999965
Q ss_pred cchHHHHHHh-CCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCCcHHH
Q 029834 81 SNVFVDWVKN-HQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEF 159 (187)
Q Consensus 81 ~t~L~~~L~~-~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~~~~~ 159 (187)
+..+.|++ +|.++|+++|+.|++||+ -|+.+.+++|. +|+|+.|||+|.....
T Consensus 92 --~v~~s~~~i~~~k~VvL~GiEthvCv~---qTa~dLl~rgl-----~VhvVaDacSSRs~~D---------------- 145 (201)
T KOG4044|consen 92 --PVEDSLKDIFGGKTVVLFGIETHVCVL---QTALDLLERGL-----NVHVVADACSSRSNQD---------------- 145 (201)
T ss_pred --hHHHHHHhccCCCeEEEEecchheehH---HHHHHHHhCCc-----eEEEEeehhccccchh----------------
Confidence 67777777 888999999999999999 69999999999 9999999999988754
Q ss_pred HHHHHHHHHHHcCcEeecccch
Q 029834 160 MHHVGLYMAKERGAKIANQLSF 181 (187)
Q Consensus 160 ~h~~~l~~~~~~~~~v~~~~~~ 181 (187)
...++..|+..|+.+.+|+..
T Consensus 146 -R~~Al~r~rq~G~~lstsEsv 166 (201)
T KOG4044|consen 146 -RDLALERMRQAGANLSTSESV 166 (201)
T ss_pred -HHHHHHHHHhcCCcccchHHH
Confidence 367888999999999998754
No 18
>PRK08329 threonine synthase; Validated
Probab=66.16 E-value=20 Score=31.28 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=43.9
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCc
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 135 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da 135 (187)
.++-|.. .+. .++++|.++..+...+++.|.++|+.+. ..|.+.- .+.-+...|+ +++|+...
T Consensus 73 ~l~~K~E~~nP-tGSfKdRga~~~i~~a~~~g~~~vv~aS-sGN~g~a----lA~~aa~~G~-----~~~v~vp~ 136 (347)
T PRK08329 73 KVYFKLDYLQP-TGSFKDRGTYVTVAKLKEEGINEVVIDS-SGNAALS----LALYSLSEGI-----KVHVFVSY 136 (347)
T ss_pred eEEEEeCCCCC-CcCCHHHHHHHHHHHHHHcCCCEEEEEC-CCcHHHH----HHHHHHHcCC-----cEEEEECC
Confidence 3555643 455 3677776655666667778999988887 7777776 6677777999 77777654
No 19
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=66.04 E-value=27 Score=28.83 Aligned_cols=98 Identities=15% Similarity=0.066 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeeCCCCCCCCCCCCCccCCCCCCcccc--ccccc-----cCCCceEEEeCCcccccccc
Q 029834 3 NESARLARAFCDRRLPVMAFLDTHHPNKPEDPYPTHCIAGTHESNLVP--ALQWI-----EKEPNVTIRRKDCFDGYFGS 75 (187)
Q Consensus 3 ~~i~~li~~~r~~g~pVv~t~d~h~~~~~~~~~p~hc~~gt~G~~l~~--~L~~~-----~~~~~~~vi~K~~~saf~~~ 75 (187)
.++.+++++++..|..++.+...-+.-+.....-.||-.+-++|.+-+ .+..+ .++-+.+-|+... |++
T Consensus 42 t~LLrr~r~~~~~grrv~liK~~kDTRy~~~si~Thdg~~~~c~~lp~a~~~s~f~~d~~~~~vdVigIDEaQ---Ff~- 117 (234)
T KOG3125|consen 42 TELLRRIRREIIAGRRVLLIKYAKDTRYESSSIVTHDGIEMPCWALPDASFLSEFGKDALNGDVDVIGIDEAQ---FFG- 117 (234)
T ss_pred HHHHHHHHHHHhcCceEEEEEecCCcccchheeEeccCCcccccccCCchhHHHHHHHHhcCcceEEEecHHH---HhH-
Confidence 356778888888898888774333222333344567776666766652 22211 1222234455544 555
Q ss_pred ccCCCcchHHHHHHh---CCCcEEEEeeeecCceeccch
Q 029834 76 IEDDGSNVFVDWVKN---HQIRKLVVVGVCTDICVLDFV 111 (187)
Q Consensus 76 ~~~~~~t~L~~~L~~---~gi~~lii~Gv~Td~CV~~~~ 111 (187)
+|.+++++ ..=+.|+++|+.+|+==.-|.
T Consensus 118 -------dl~efc~evAd~~Gk~VivagLdgdF~Rk~Fg 149 (234)
T KOG3125|consen 118 -------DLYEFCREVADVHGKTVIVAGLDGDFKRKPFG 149 (234)
T ss_pred -------HHHHHHHHHHhccCCEEEEEecCCchhhCcch
Confidence 67777777 235789999999987555444
No 20
>PRK06381 threonine synthase; Validated
Probab=64.39 E-value=22 Score=30.40 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=43.4
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
.++-|.. ++. ++++++.+...+...++++|.++|+ ++-..|.++- .+.-+...|+ +++++.+...
T Consensus 32 ~i~~K~E~~np-tGS~K~R~a~~~l~~a~~~g~~~lv-~aSsGN~g~a----lA~~aa~~G~-----~~~ivvp~~~ 97 (319)
T PRK06381 32 KIYLKFEGANP-TGTQKDRIAEAHVRRAMRLGYSGIT-VGTCGNYGAS----IAYFARLYGL-----KAVIFIPRSY 97 (319)
T ss_pred eEEEEecCCCC-ccCcHHHHHHHHHHHHHHcCCCEEE-EeCCcHHHHH----HHHHHHHcCC-----cEEEEECCCC
Confidence 3556643 444 4666665544555566778887765 4567777776 6777888999 8888777543
No 21
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=62.87 E-value=21 Score=31.42 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=40.3
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcc
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 136 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~ 136 (187)
.++-|.. ++. .+++++.+.-......++.|.+.+++.+=..|.|.- ++.-+..+|+ +++|+....
T Consensus 51 ~l~~K~E~~np-tgS~K~R~a~~~~~~a~~~g~~~vv~~~ssGN~g~a----lA~~a~~~G~-----~~~ivvp~~ 116 (365)
T cd06446 51 KIYLKREDLNH-TGAHKINNALGQALLAKRMGKKRVIAETGAGQHGVA----TATACALFGL-----ECEIYMGAV 116 (365)
T ss_pred eEEEEeccCCC-ccchhHHHHHHHHHHHHHcCCCeEEEecCchHHHHH----HHHHHHHhCC-----CeEEEEcCC
Confidence 3555643 343 345554432233333456788888875545677766 7888889999 788777643
No 22
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=61.37 E-value=18 Score=32.64 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=55.1
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCC
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFD 140 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~ 140 (187)
.++-|.. ++. .+++++.++-......++.|.+++++..=+.+.|.- .+.-+...|+ +++|+....+. .
T Consensus 86 ~Iy~K~E~~nP-tGS~K~R~A~~~~~~a~~~G~~~~vtetssGN~G~a----lA~aaa~~Gl-----~~~V~mp~~s~-~ 154 (419)
T TIGR01415 86 RIYYKYESVSP-TGSHKINTAIAQAYYAKIEGAKRLVTETGAGQWGSA----LSLAGALFGL-----ECKVFMVRVSF-N 154 (419)
T ss_pred eEEEEECCCCC-CCCcHHHHHHHHHHHHHHcCCCeEEEecCchHHHHH----HHHHHHHcCC-----cEEEEEeCCCc-c
Confidence 4666643 333 245555443344455677899988875334667655 6778888999 88887775432 2
Q ss_pred ccchhhhhcccccCCcHHHHHHHHHHHHHHcCcEeeccc
Q 029834 141 IPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQL 179 (187)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~h~~~l~~~~~~~~~v~~~~ 179 (187)
.. ..-..+|+..|++|+.+.
T Consensus 155 ~k-------------------~~k~~~m~~~GA~Vi~~~ 174 (419)
T TIGR01415 155 QK-------------------PYRKYLMELYGAEVIPSP 174 (419)
T ss_pred cC-------------------HHHHHHHHHcCCEEEEEC
Confidence 11 111358999999998653
No 23
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=59.48 E-value=27 Score=30.09 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=41.3
Q ss_pred EEeCC-ccccccccccCCCcchHHHHHHhCC---CcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 63 IRRKD-CFDGYFGSIEDDGSNVFVDWVKNHQ---IRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 63 vi~K~-~~saf~~~~~~~~~t~L~~~L~~~g---i~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
++-|. ..+. .+++++.+...+...+.+.| .++|+.++ ..|.++- .+.-+..+|+ +++|+.....
T Consensus 18 i~~K~E~~np-tGS~K~R~a~~~l~~a~~~g~~~~~~vv~aS-sGN~g~a----lA~~a~~~G~-----~~~iv~p~~~ 85 (316)
T cd06448 18 VFLKLENLQP-SGSFKIRGIGHLCQKSAKQGLNECVHVVCSS-GGNAGLA----AAYAARKLGV-----PCTIVVPEST 85 (316)
T ss_pred EEEEeccCCC-cCChHHHHHHHHHHHHHHhhcccCCeEEEeC-CcHHHHH----HHHHHHHcCC-----CEEEEECCCC
Confidence 44454 3344 46666654444444455556 77777776 5777776 6777888999 8888887753
No 24
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=57.52 E-value=29 Score=28.24 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=41.8
Q ss_pred EEEeCCccccccccccCCCcchHHHHHHhCCC--cEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 62 TIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQI--RKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 62 ~vi~K~~~saf~~~~~~~~~t~L~~~L~~~gi--~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
.++-|..+.-..+++++.+...+...+++.|. ...+++.-..|.++- .+.-+...|+ +++++.+.-.
T Consensus 16 ~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~a----lA~~a~~~g~-----~~~v~~p~~~ 84 (244)
T cd00640 16 NIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIA----LAAAAARLGL-----KCTIVMPEGA 84 (244)
T ss_pred EEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHH----HHHHHHHcCC-----CEEEEECCCC
Confidence 35556543333366665544455556666663 455666555788865 6777777999 7888777654
No 25
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=57.09 E-value=36 Score=28.63 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=43.6
Q ss_pred EEEeCCccccccccccCCCcchHHHHHHhCCCc---EEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 62 TIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIR---KLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 62 ~vi~K~~~saf~~~~~~~~~t~L~~~L~~~gi~---~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
.++-|...--..+++++.+...+...+++.|.. +.+++.-..|.|.- .+.-+...|+ +++|+.+...
T Consensus 18 ~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~a----lA~~a~~~G~-----~~~i~vp~~~ 87 (291)
T cd01561 18 EIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIG----LAMVAAAKGY-----RFIIVMPETM 87 (291)
T ss_pred eEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHH----HHHHHHHcCC-----eEEEEECCCC
Confidence 455565433333666655444555566666652 45677888888876 7888888999 8888876643
No 26
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=56.24 E-value=23 Score=29.96 Aligned_cols=92 Identities=9% Similarity=0.042 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhCCCcEEEEeeeCCCCCCCC--CCCCCccCCCCCCccccccccccCCCceEEEeCCccccccccccCCCc
Q 029834 4 ESARLARAFCDRRLPVMAFLDTHHPNKPED--PYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGS 81 (187)
Q Consensus 4 ~i~~li~~~r~~g~pVv~t~d~h~~~~~~~--~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~~~~~~~~~ 81 (187)
.+..|.+.+++.|+|++-. .|.+...+. ...+--..|+.-..-.+-|....+.....++.|+.+.....-
T Consensus 67 gl~~L~~~~~~~Gl~~~Te--v~d~~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~------ 138 (250)
T PRK13397 67 GIRYLHEVCQEFGLLSVSE--IMSERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEY------ 138 (250)
T ss_pred HHHHHHHHHHHcCCCEEEe--eCCHHHHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHH------
Confidence 4667778888888888876 555443220 111111123322222222222211111234444434444321
Q ss_pred chHHHHHHhCCCcEEEEe--eeec
Q 029834 82 NVFVDWVKNHQIRKLVVV--GVCT 103 (187)
Q Consensus 82 t~L~~~L~~~gi~~lii~--Gv~T 103 (187)
..-.+++++.|.++|+|| |+.|
T Consensus 139 ~~A~e~i~~~Gn~~i~L~eRg~~~ 162 (250)
T PRK13397 139 LGALSYLQDTGKSNIILCERGVRG 162 (250)
T ss_pred HHHHHHHHHcCCCeEEEEccccCC
Confidence 134456777888899998 6533
No 27
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=54.49 E-value=38 Score=28.81 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=31.6
Q ss_pred HHHHhCCCcEEEEee-eecCceeccchhhHHHHHHcCCCCCcceEEEeCCcc
Q 029834 86 DWVKNHQIRKLVVVG-VCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 136 (187)
Q Consensus 86 ~~L~~~gi~~lii~G-v~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~ 136 (187)
+..+++|.++|+-+| -..|.+.- .+.-+..+|+ +++++.+..
T Consensus 49 ~~a~~~g~~~vv~~g~ssGN~g~a----lA~~a~~~G~-----~~~ivvp~~ 91 (311)
T TIGR01275 49 ADALSKGADTVITVGAIQSNHARA----TALAAKKLGL-----DAVLVLREK 91 (311)
T ss_pred HHHHHcCCCEEEEcCCchhHHHHH----HHHHHHHhCC-----ceEEEecCC
Confidence 444567888888876 56677766 6777788999 888888874
No 28
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=51.91 E-value=41 Score=29.90 Aligned_cols=66 Identities=15% Similarity=0.010 Sum_probs=38.9
Q ss_pred EEEeCCccccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcc
Q 029834 62 TIRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 136 (187)
Q Consensus 62 ~vi~K~~~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~ 136 (187)
.++-|...---.+++++.+.-......++.|.+++++..=+.+.|.- .+..+...|+ +++|+....
T Consensus 67 ~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~vi~e~ssGN~G~a----lA~~a~~~Gl-----~~~Iv~p~~ 132 (385)
T TIGR00263 67 KIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVA----TATAAALLGL-----DCEVYMGAE 132 (385)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHH----HHHHHHHcCC-----CEEEEecCC
Confidence 45556432222355544432222233445677888775555566766 7888888999 888887653
No 29
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=51.28 E-value=33 Score=31.17 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=53.5
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCC
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFD 140 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~ 140 (187)
.++-|.. ++. .+++++.++.......++.|+++++...=+.+.|.- .+.-+...|+ +++|+..-++ +.
T Consensus 95 ~Iy~K~E~~nP-tGS~K~R~A~~~a~~a~~~G~~~~vtetgsGN~G~a----lA~aaa~~Gl-----~~~V~mp~~s-~~ 163 (427)
T PRK12391 95 KIYYKYEGVSP-TGSHKPNTAVAQAYYNKKEGIKRLTTETGAGQWGSA----LALACALFGL-----ECTVFMVRVS-YE 163 (427)
T ss_pred eEEEEEcCCCC-CCChHHHHHHHHHHHHHHCCCCEEEEccCchHHHHH----HHHHHHHcCC-----cEEEEEecCC-cc
Confidence 4666653 333 355555443334445577898887764333556655 6777778999 8888877533 22
Q ss_pred ccchhhhhcccccCCcHHHHHHHHHHHHHHcCcEeeccc
Q 029834 141 IPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQL 179 (187)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~h~~~l~~~~~~~~~v~~~~ 179 (187)
.+ ..-..+|+..||+|+.+.
T Consensus 164 ~k-------------------~~r~~~mr~~GA~Vi~~~ 183 (427)
T PRK12391 164 QK-------------------PYRRSLMETYGAEVIPSP 183 (427)
T ss_pred cC-------------------HHHHHHHHHCCCEEEEEC
Confidence 11 111248999999998754
No 30
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=49.86 E-value=61 Score=27.65 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=42.9
Q ss_pred EEeCCc-cccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 63 IRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 63 vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
++-|.. .+. .+++++.+...+...+.++|.++|+.+ -..|.|+- .+.-+...|+ +++++.+-..
T Consensus 40 i~~K~E~~np-tGS~K~R~a~~~l~~a~~~g~~~vv~~-SsGN~g~a----lA~~a~~~G~-----~~~ivvp~~~ 104 (324)
T cd01563 40 LYVKDEGLNP-TGSFKDRGMTVAVSKAKELGVKAVACA-STGNTSAS----LAAYAARAGI-----KCVVFLPAGK 104 (324)
T ss_pred eEEEecCCCC-cccHHHhhHHHHHHHHHHcCCCEEEEe-CCCHHHHH----HHHHHHHcCC-----ceEEEEeCCC
Confidence 555643 344 566666655556666666787776654 67777776 6777888999 8888876654
No 31
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=47.55 E-value=20 Score=28.16 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=36.5
Q ss_pred hHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeC
Q 029834 83 VFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYS 133 (187)
Q Consensus 83 ~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~ 133 (187)
.+.++|...|+..+..-|...|-++- +-++.+.+.|+ +|++++
T Consensus 90 ~i~~~l~~~gi~~~~~~g~EADDvIa---tla~~~~~~~~-----~v~IvS 132 (169)
T PF02739_consen 90 YIKELLEALGIPVLEVPGYEADDVIA---TLAKKASEEGF-----EVIIVS 132 (169)
T ss_dssp HHHHHHHHTTSEEEEETTB-HHHHHH---HHHHHHHHTTC-----EEEEE-
T ss_pred HHHHHHHHCCCCEecCCCCcHHHHHH---HHHhhhccCCC-----EEEEEc
Confidence 35667777999999999999999999 88999999999 888875
No 32
>COG1647 Esterase/lipase [General function prediction only]
Probab=46.18 E-value=39 Score=28.36 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=30.7
Q ss_pred HHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCc
Q 029834 86 DWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDI 141 (187)
Q Consensus 86 ~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~ 141 (187)
..|.+.|+++|.|+|++-- .|. |.+ +++.+|.++++.++-.+...+.
T Consensus 77 ~~L~~~gy~eI~v~GlSmG-Gv~----alk----la~~~p~K~iv~m~a~~~~k~~ 123 (243)
T COG1647 77 RDLKEAGYDEIAVVGLSMG-GVF----ALK----LAYHYPPKKIVPMCAPVNVKSW 123 (243)
T ss_pred HHHHHcCCCeEEEEeecch-hHH----HHH----HHhhCCccceeeecCCcccccc
Confidence 3577799999999999842 222 344 4444466688877766664443
No 33
>PRK07591 threonine synthase; Validated
Probab=44.75 E-value=67 Score=28.89 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=42.2
Q ss_pred EEEeCC-ccccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCc
Q 029834 62 TIRRKD-CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 135 (187)
Q Consensus 62 ~vi~K~-~~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da 135 (187)
.++-|. ..+. .++++|.++..+...+++.|.++| +++-..|.+.- .+.-+...|+ +++|+...
T Consensus 106 ~l~~K~E~~nP-tGSfKdRga~~~v~~A~~~g~~~v-v~aSsGN~g~a----lA~~aa~~Gl-----~~~I~vP~ 169 (421)
T PRK07591 106 NLYIKDDSVNP-THSFKDRVVSVALTAARELGFTTV-ACASTGNLANS----VAAHAARAGL-----DSCVFIPA 169 (421)
T ss_pred cEEEEeCCCCC-ccChHHHHHHHHHHHHHHcCCCEE-EEeCCCHHHHH----HHHHHHHcCC-----CEEEEEcC
Confidence 355564 3455 467776655555556677888887 56677777766 5666677999 77777665
No 34
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=43.41 E-value=85 Score=26.48 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=40.7
Q ss_pred EEeCCc-cccccccccCCCcchHHHHHHhCCC---cEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 63 IRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQI---RKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 63 vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi---~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
++-|.. .+. .+++++.+...+...+.+.|. .+.+++.-..|.|.- .+.-|...|+ +++|+..-..
T Consensus 23 i~~K~E~~np-tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~a----lA~~a~~~Gl-----~~~i~vp~~~ 91 (298)
T TIGR01139 23 VFVKLEGRNP-SGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIA----LAMVAAARGY-----KLILTMPETM 91 (298)
T ss_pred EEEEEcccCC-CCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHH----HHHHHHHcCC-----eEEEEeCCcc
Confidence 444543 343 366666554455555555555 133578888888877 6777778999 7888766543
No 35
>PRK06815 hypothetical protein; Provisional
Probab=42.15 E-value=61 Score=27.81 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=37.8
Q ss_pred EEeCCccccccccccCCCcchHHHHHHhC-CCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 63 IRRKDCFDGYFGSIEDDGSNVFVDWVKNH-QIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 63 vi~K~~~saf~~~~~~~~~t~L~~~L~~~-gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
++-|..+---++++++.++.+....|.+. +.+. +|+.-..|.|.- .+.-+..+|+ +++|+.+...
T Consensus 37 i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~~~~-vv~aSsGN~g~a----lA~~a~~~G~-----~~~i~~p~~~ 102 (317)
T PRK06815 37 VYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQG-VITASSGNHGQG----VALAAKLAGI-----PVTVYAPEQA 102 (317)
T ss_pred EEEEecCCCCCCCcHHHHHHHHHHhcchhhcCce-EEEECCChHHHH----HHHHHHHhCC-----CEEEEECCCC
Confidence 45554322224555555444444444332 2334 455677888876 6777788999 8888876543
No 36
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=41.93 E-value=52 Score=27.73 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhCCCcEEEEeeeCCCCCCCC--CCCCCccCCCCCCccccccccccCCCceEEEeCCccccccccccCCCc
Q 029834 4 ESARLARAFCDRRLPVMAFLDTHHPNKPED--PYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGS 81 (187)
Q Consensus 4 ~i~~li~~~r~~g~pVv~t~d~h~~~~~~~--~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~~~~~~~~~ 81 (187)
.+..|-+.+++.|+|++-+ .|.+...+. ...+.-..|+.-..-.+-|....+.....++.++.+.+...-
T Consensus 77 gl~~l~~~~~~~Gl~~~t~--~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~------ 148 (260)
T TIGR01361 77 GLKLLRRAADEHGLPVVTE--VMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEW------ 148 (260)
T ss_pred HHHHHHHHHHHhCCCEEEe--eCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHH------
Confidence 3556778899999999987 665543321 111111122222111222222211111244444433233221
Q ss_pred chHHHHHHhCCCcEEEEe--eeec
Q 029834 82 NVFVDWVKNHQIRKLVVV--GVCT 103 (187)
Q Consensus 82 t~L~~~L~~~gi~~lii~--Gv~T 103 (187)
.+-.+.+++.|.++|+|+ |+.+
T Consensus 149 ~~Ave~i~~~Gn~~i~l~~rG~s~ 172 (260)
T TIGR01361 149 LYAAEYILSSGNGNVILCERGIRT 172 (260)
T ss_pred HHHHHHHHHcCCCcEEEEECCCCC
Confidence 134456777898888887 5644
No 37
>PRK06721 threonine synthase; Reviewed
Probab=41.41 E-value=52 Score=28.77 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=41.7
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcc
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 136 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~ 136 (187)
.++-|-. ++. .+++++.+...+....+++|.++|+.+ -..|.+.- .+.-+...|+ +++|+.+..
T Consensus 44 ~i~~K~E~~np-tGS~KdR~a~~~i~~a~~~g~~~vV~a-SsGN~G~a----lA~~aa~~G~-----~~~vvvp~~ 108 (352)
T PRK06721 44 QLYGKYEGANP-TGSFKDRGMVMAVAKAKEEGSEAIICA-STGNTSAS----AAAYAARLGM-----KCIIVIPEG 108 (352)
T ss_pred eEEEEecCCCC-ccchHHHHHHHHHHHHHHCCCCEEEEE-CCcHHHHH----HHHHHHHCCC-----cEEEEECCC
Confidence 3555643 455 366666554555555667887766554 57777766 6667778999 888887654
No 38
>PRK07048 serine/threonine dehydratase; Validated
Probab=41.24 E-value=82 Score=26.98 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=39.3
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHH-hCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVK-NHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~-~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
.++-|.. ++. .+++++.++..+...+. +.+.+.|+-++ ..|.+.- .+.-+..+|+ +++++.....
T Consensus 40 ~i~~K~E~~np-tGS~K~R~a~~~i~~~~~~~~~~~vv~aS-sGN~g~a----lA~~a~~~G~-----~~~vvvp~~~ 106 (321)
T PRK07048 40 QVFFKCENFQR-MGAFKFRGAYNALSQFSPEQRRAGVVTFS-SGNHAQA----IALSARLLGI-----PATIVMPQDA 106 (321)
T ss_pred eEEEEeccCCC-CCCeeHHHHHHHHHhhhHhhcCCcEEEeC-CCHHHHH----HHHHHHHcCC-----CEEEEECCCC
Confidence 3455543 343 35566554444444444 45566666555 6777776 6777778999 7888777543
No 39
>PRK10717 cysteine synthase A; Provisional
Probab=40.93 E-value=88 Score=26.89 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=42.1
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHHhCCC-c--EEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQI-R--KLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi-~--~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
.++-|.. .+. .+++++.+...+...+.+.|. . .-+|+.-..|.|.- .+..+..+|+ +++|+.....
T Consensus 29 ~i~~K~E~~np-tGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~a----lA~~a~~~G~-----~~~vv~p~~~ 98 (330)
T PRK10717 29 EILGKAEFLNP-GGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIG----LALVAAARGY-----KTVIVMPETQ 98 (330)
T ss_pred eEEEEeeccCC-CCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHH----HHHHHHHcCC-----cEEEEeCCCC
Confidence 3555643 344 366666554455555555554 1 34777888888887 6777778999 8888877654
No 40
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=40.86 E-value=45 Score=28.37 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=32.9
Q ss_pred HHHHhCCCcEEEEee-eecCceeccchhhHHHHHHcCCCCCcceEEEeCCcccc
Q 029834 86 DWVKNHQIRKLVVVG-VCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACAT 138 (187)
Q Consensus 86 ~~L~~~gi~~lii~G-v~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s 138 (187)
...+++|.++|+-+| -..|.+.- .+..+..+|+ +++++.+...+
T Consensus 45 ~~a~~~g~~~vv~~ggs~GN~g~a----lA~~a~~~G~-----~~~i~v~~~~~ 89 (307)
T cd06449 45 PDALAKGADTLVTVGGIQSNHTRQ----VAAVAAKLGL-----KCVLVQENWVP 89 (307)
T ss_pred HHHHHcCCCEEEECCCchhHHHHH----HHHHHHHcCC-----eEEEEecCCCC
Confidence 334458888888876 66777776 7888888999 88888886544
No 41
>PRK08197 threonine synthase; Validated
Probab=39.90 E-value=1.1e+02 Score=27.12 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=42.9
Q ss_pred EEEeCC-ccccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcc
Q 029834 62 TIRRKD-CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 136 (187)
Q Consensus 62 ~vi~K~-~~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~ 136 (187)
.++-|. ..+. +++++|.++..+.....+.|.++|+. .-+.|.+.- .+.-+...|+ +++|+....
T Consensus 96 ~l~~K~E~~nP-tGSfKdRga~~~i~~a~~~g~~~vv~-aSsGN~g~a----lA~~aa~~G~-----~~~v~vp~~ 160 (394)
T PRK08197 96 RLWVKDEGLNP-TGSFKARGLAVGVSRAKELGVKHLAM-PTNGNAGAA----WAAYAARAGI-----RATIFMPAD 160 (394)
T ss_pred cEEEEeCCCCC-CcCcHHhHHHHHHHHHHHcCCCEEEE-eCCcHHHHH----HHHHHHHcCC-----cEEEEEcCC
Confidence 345564 3455 57788877666666666788877654 456677665 6777778999 788877654
No 42
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=39.67 E-value=77 Score=28.06 Aligned_cols=84 Identities=12% Similarity=0.232 Sum_probs=52.7
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHHhCCC----cEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcc
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQI----RKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 136 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi----~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~ 136 (187)
.++-|.. .+.+ +++++.+...+.....++|. .+-+|+.-..|.|+- .+.-+..+|| +++|+....
T Consensus 75 ~I~~KlE~~nPt-GS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~a----lA~~a~~~G~-----~~~ivvp~~ 144 (368)
T PLN02556 75 YIAAKQEMFQPT-SSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGIS----LAFMAAMKGY-----KMILTMPSY 144 (368)
T ss_pred EEEEEecccCCc-cchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHH----HHHHHHHcCC-----CEEEEECCC
Confidence 4555643 4554 56665544444444444553 245777889999987 7888889999 888886554
Q ss_pred ccCCccchhhhhcccccCCcHHHHHHHHHHHHHHcCcEeecc
Q 029834 137 ATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQ 178 (187)
Q Consensus 137 ~s~~~~~~~a~~~~~~~~~~~~~~h~~~l~~~~~~~~~v~~~ 178 (187)
.+.. -+..|+..|++|+-.
T Consensus 145 ~~~~-----------------------k~~~lr~~GA~Vi~~ 163 (368)
T PLN02556 145 TSLE-----------------------RRVTMRAFGAELVLT 163 (368)
T ss_pred CCHH-----------------------HHHHHHHcCCEEEEE
Confidence 2211 134777788887754
No 43
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=39.66 E-value=52 Score=31.91 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=42.7
Q ss_pred HHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCCcHHHHHHHHHH
Q 029834 87 WVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLY 166 (187)
Q Consensus 87 ~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~~~~~~h~~~l~ 166 (187)
..++.|.+++|+.-=+.+.|+- ++.-+..+|+ +++|+......... ..-+.
T Consensus 373 ~A~~~G~~~~IvetssGNhG~A----lA~aaA~~Gl-----~c~Ivmp~~~~~~~--------------------~~nv~ 423 (695)
T PRK13802 373 LVKRMGKTRVIAETGAGQHGVA----TATVCAMLGL-----KCRIYMGQIDARRQ--------------------ALNVA 423 (695)
T ss_pred HHHHcCCCCEEEEECcHHHHHH----HHHHHHHcCC-----CEEEEEeCCccccc--------------------HHHHH
Confidence 3445788888876666777776 8888888999 88888875422111 12345
Q ss_pred HHHHcCcEeecc
Q 029834 167 MAKERGAKIANQ 178 (187)
Q Consensus 167 ~~~~~~~~v~~~ 178 (187)
.|+..||+|+..
T Consensus 424 ~mr~lGAeVi~v 435 (695)
T PRK13802 424 RMRMLGAEVVEV 435 (695)
T ss_pred HHHHcCCEEEEE
Confidence 788888888753
No 44
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=39.19 E-value=58 Score=27.08 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=40.7
Q ss_pred EEEeCC-ccccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCC
Q 029834 62 TIRRKD-CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSA 134 (187)
Q Consensus 62 ~vi~K~-~~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~D 134 (187)
.++-|. .++. ++++++.+...+....++++.++| +++-..|.|.- .+..+..+|+ +++++..
T Consensus 25 ~i~~K~E~~~p-tgs~K~R~a~~~l~~a~~~~~~~v-v~assGN~g~a----~A~~a~~~g~-----~~~i~~p 87 (306)
T PF00291_consen 25 NIYLKREDLNP-TGSFKDRGAYYLLSRAKEKGGRTV-VGASSGNHGRA----LAYAAARLGL-----KCTIVVP 87 (306)
T ss_dssp EEEEEEGGGST-TSBTHHHHHHHHHHHHHHTTTSEE-EEESSSHHHHH----HHHHHHHHTC-----EEEEEEE
T ss_pred eEEEEECCCCC-cCCcccccchhhhhhcccccccee-eeeccCCceeh----hhhhhhhccc-----cceeeec
Confidence 444453 3454 455554433334444555678888 77888888887 6777888899 8888873
No 45
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=39.08 E-value=38 Score=33.74 Aligned_cols=68 Identities=9% Similarity=0.152 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEEeeeCCCCCCC-CCCCCCccCCCCCCccccccccccCC-CceEEEeCCcc
Q 029834 2 INESARLARAFCDRRLPVMAFLDTHHPNKPE-DPYPTHCIAGTHESNLVPALQWIEKE-PNVTIRRKDCF 69 (187)
Q Consensus 2 i~~i~~li~~~r~~g~pVv~t~d~h~~~~~~-~~~p~hc~~gt~G~~l~~~L~~~~~~-~~~~vi~K~~~ 69 (187)
+..+..+|+.++++|+.||-+.....|++.. +.|..+.++.+..-.|+.+|..+.+. ++.++++.+.+
T Consensus 807 ~~~l~~~i~~~~~~~~~~ig~~~p~~p~y~~t~~fg~~g~~rs~a~~~~~~~~~~~~~y~~f~~~denk~ 876 (912)
T TIGR02171 807 MNSLKAFIDETAKKGVKVIGTIFPQSPGYKNTGSFGRYGPRRSIAKKIIDSFKKMEKTYPHFILFDENKD 876 (912)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCCCCCccccCcccccCcchhhHHHHHHHHHHHHhhCCceEEEecCcC
Confidence 3567889999999999999997777777765 56887777777777888888766432 34667766543
No 46
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=39.06 E-value=68 Score=28.85 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=41.2
Q ss_pred HhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCCcHHHHHHHHHHHH
Q 029834 89 KNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMA 168 (187)
Q Consensus 89 ~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~~~~~~h~~~l~~~ 168 (187)
++.|.+++|+.-=+.+.++- ++.-+..+|+ +++|+..... ... ....+..|
T Consensus 102 ~~~Gk~~vIaetgaGnhG~A----~A~~aa~~Gl-----~c~I~mp~~d-~~r-------------------q~~nv~~m 152 (397)
T PRK04346 102 KRMGKKRIIAETGAGQHGVA----TATAAALLGL-----ECVIYMGAED-VER-------------------QALNVFRM 152 (397)
T ss_pred HHcCCCeEEEecCcHHHHHH----HHHHHHHcCC-----cEEEEecCCc-hhh-------------------hhhHHHHH
Confidence 45688888774445567776 8888889999 8888887632 111 12235678
Q ss_pred HHcCcEeecc
Q 029834 169 KERGAKIANQ 178 (187)
Q Consensus 169 ~~~~~~v~~~ 178 (187)
+..||+|+..
T Consensus 153 ~~lGA~Vv~v 162 (397)
T PRK04346 153 KLLGAEVVPV 162 (397)
T ss_pred HHCCCEEEEE
Confidence 8888888753
No 47
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=38.67 E-value=87 Score=28.00 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=40.5
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHHhCCC----cEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcc
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQI----RKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 136 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi----~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~ 136 (187)
.++-|.. ++. .+++++.+...+...+.++|. ++| |+--..|.|.- .+..+..+|+ +++++.+..
T Consensus 27 ~i~~K~E~~np-tGS~K~R~a~~~l~~a~~~g~~~~g~~v-v~~ssGN~g~a----lA~~a~~~G~-----~~~iv~p~~ 95 (454)
T TIGR01137 27 ELLAKCEFFNP-GGSVKDRIALRMIEDAEASGRLKPGDTI-IEPTSGNTGIG----LALVAAIKGY-----KCIIVLPEK 95 (454)
T ss_pred eEEEEEhhcCC-CcchHHHHHHHHHHHHHHcCCCCCCCEE-EEeCCcHHHHH----HHHHHHHcCC-----eEEEEeCCC
Confidence 3555643 344 466666544444444555555 554 55577888876 7778888999 888887754
No 48
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=38.57 E-value=1.4e+02 Score=26.40 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=44.2
Q ss_pred hHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccch
Q 029834 83 VFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTH 144 (187)
Q Consensus 83 ~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~ 144 (187)
+|-+.+-+.+-.-|+=+|+++.-=+. ..+....+.|- .=+++.-|+++|+.+..
T Consensus 138 plik~iA~~~kPiIlSTGma~~~ei~---~av~~~r~~g~-----~~i~LLhC~s~YPap~e 191 (347)
T COG2089 138 PLIKYIAKKGKPIILSTGMATIEEIE---EAVAILRENGN-----PDIALLHCTSAYPAPFE 191 (347)
T ss_pred HHHHHHHhcCCCEEEEcccccHHHHH---HHHHHHHhcCC-----CCeEEEEecCCCCCCHH
Confidence 68888888888999999999988888 77777777887 56778889999987643
No 49
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=38.28 E-value=46 Score=24.13 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhCCCcEEEE
Q 029834 3 NESARLARAFCDRRLPVMAF 22 (187)
Q Consensus 3 ~~i~~li~~~r~~g~pVv~t 22 (187)
+.+.++++.+|++|.|+|.+
T Consensus 61 ~~~~~~~~~a~~~g~~vi~i 80 (120)
T cd05710 61 KETVAAAKFAKEKGATVIGL 80 (120)
T ss_pred hHHHHHHHHHHHcCCeEEEE
Confidence 56788999999999999987
No 50
>PRK11761 cysM cysteine synthase B; Provisional
Probab=38.10 E-value=1.1e+02 Score=26.01 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=40.8
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHHhCCC----cEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcc
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQI----RKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 136 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi----~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~ 136 (187)
.++-|.. .+. .+++++.+...+...+.+.|. ++ +|+--..|.|.- .+.-+...|+ +++|+..-.
T Consensus 28 ~i~~K~E~~np-tGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~a----lA~~a~~~G~-----~~~i~~p~~ 96 (296)
T PRK11761 28 TILAKLEGNNP-AGSVKDRPALSMIVQAEKRGEIKPGDT-LIEATSGNTGIA----LAMIAAIKGY-----RMKLIMPEN 96 (296)
T ss_pred EEEEEEcccCC-CCCchhHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHH----HHHHHHHcCC-----CEEEEECCC
Confidence 3555644 344 566666655555556666664 44 566677777766 6777778999 787777554
No 51
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=37.70 E-value=1.2e+02 Score=25.62 Aligned_cols=66 Identities=11% Similarity=0.180 Sum_probs=40.4
Q ss_pred EEeCC-ccccccccccCCCcchHHHHHHhCCC---cEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcccc
Q 029834 63 IRRKD-CFDGYFGSIEDDGSNVFVDWVKNHQI---RKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACAT 138 (187)
Q Consensus 63 vi~K~-~~saf~~~~~~~~~t~L~~~L~~~gi---~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s 138 (187)
++-|. ..+. .+++++.+...+...+.+.|. .+.+++.-..|.|.- .+.-|..+|+ +++|+.....+
T Consensus 24 i~~K~E~~~p-tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~a----lA~~a~~~G~-----~~~i~vp~~~~ 93 (299)
T TIGR01136 24 VLAKLEGRNP-SGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIA----LAMVAAAKGY-----KLILTMPETMS 93 (299)
T ss_pred EEEEEcccCC-CCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHH----HHHHHHHcCC-----cEEEEECCCCC
Confidence 44453 3344 356666554454455555554 134567788888876 6777778999 78888766543
No 52
>PRK06608 threonine dehydratase; Provisional
Probab=37.36 E-value=94 Score=27.08 Aligned_cols=84 Identities=13% Similarity=0.019 Sum_probs=49.8
Q ss_pred EEeCCc-cccccccccCCCcchHHHHHHhCCC-cEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCC
Q 029834 63 IRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQI-RKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFD 140 (187)
Q Consensus 63 vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi-~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~ 140 (187)
++-|.. ++. .+++++.+...+...+.++|. .+-+|+.-..|.+.- .+.-+..+|+ +++|+.+...+
T Consensus 40 l~~K~E~~np-tGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~g~a----lA~~a~~~G~-----~~~vv~p~~~~-- 107 (338)
T PRK06608 40 IFFKVESLQK-TGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQA----VAYASKLFGI-----KTRIYLPLNTS-- 107 (338)
T ss_pred EEEEeCCCCC-CCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHHHHH----HHHHHHHcCC-----CEEEEECCCCC--
Confidence 445543 333 455555444444455555565 234556677788776 6677778999 88888754322
Q ss_pred ccchhhhhcccccCCcHHHHHHHHHHHHHHcCcEeeccc
Q 029834 141 IPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKIANQL 179 (187)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~h~~~l~~~~~~~~~v~~~~ 179 (187)
..-+..|+..|++|+...
T Consensus 108 ---------------------~~k~~~l~~~GA~V~~~~ 125 (338)
T PRK06608 108 ---------------------KVKQQAALYYGGEVILTN 125 (338)
T ss_pred ---------------------HHHHHHHHhCCCEEEEEC
Confidence 112446777788877553
No 53
>PLN02618 tryptophan synthase, beta chain
Probab=36.73 E-value=61 Score=29.34 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=42.4
Q ss_pred HhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCCcHHHHHHHHHHHH
Q 029834 89 KNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMA 168 (187)
Q Consensus 89 ~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~~~~~~h~~~l~~~ 168 (187)
++.|.+++|+.-=+.+.|+- ++.-+...|+ +++|+..... ... ....+..|
T Consensus 115 ~~~g~~~vIaesgaGNhG~A----lA~aaa~~Gl-----~~~I~m~~~~-~~~-------------------~~~nv~~m 165 (410)
T PLN02618 115 KRLGKKRIIAETGAGQHGVA----TATVCARFGL-----ECIVYMGAQD-MER-------------------QALNVFRM 165 (410)
T ss_pred HHcCCCEEEEEcCcHHHHHH----HHHHHHHcCC-----cEEEEEcCCc-hhh-------------------hhhhHHHH
Confidence 44677888876556778887 8888888999 8998887642 111 12234578
Q ss_pred HHcCcEeecc
Q 029834 169 KERGAKIANQ 178 (187)
Q Consensus 169 ~~~~~~v~~~ 178 (187)
+..|++|+..
T Consensus 166 r~lGA~Vi~v 175 (410)
T PLN02618 166 RLLGAEVRPV 175 (410)
T ss_pred HHCCCEEEEE
Confidence 8888888654
No 54
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=36.49 E-value=1.3e+02 Score=25.53 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=41.7
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHHhCCC---cEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQI---RKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi---~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
.++-|.. .+. .+++++.+...+...+.++|. .+.+|+.-..|.|.- .+.-+..+|+ +++++.+...
T Consensus 24 ~i~~K~E~~np-tGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~a----lA~~a~~~G~-----~~~i~~p~~~ 93 (290)
T TIGR01138 24 EVWLKLEGNNP-AGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIA----LAMIAALKGY-----RMKLLMPDNM 93 (290)
T ss_pred eEEEEEccCCC-CccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHH----HHHHHHHcCC-----eEEEEECCCC
Confidence 3455543 444 366665554444445555554 245677788888876 6777778999 8888876654
No 55
>PRK07476 eutB threonine dehydratase; Provisional
Probab=36.03 E-value=91 Score=26.77 Aligned_cols=65 Identities=14% Similarity=0.060 Sum_probs=40.3
Q ss_pred EEeCCc-cccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 63 IRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 63 vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
++-|.. .+. .+++++.+...+...+.+.+.++=+|+--..|.|.- .+.-+...|+ +++|+.+-..
T Consensus 36 l~~K~E~~np-tGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~a----lA~~a~~~G~-----~~~i~vp~~~ 101 (322)
T PRK07476 36 VWLKLETLQP-TGSFKLRGATNALLSLSAQERARGVVTASTGNHGRA----LAYAARALGI-----RATICMSRLV 101 (322)
T ss_pred EEEEEccCCC-CCCchHHHHHHHHHhhhhhhhCCeEEEECCChHHHH----HHHHHHHhCC-----CEEEEeCCCC
Confidence 444533 333 466666554445555555555552455577888876 6778888999 8888775543
No 56
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=35.87 E-value=1.3e+02 Score=26.05 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=32.2
Q ss_pred HHHHHhCCCcEEEEee-eecCceeccchhhHHHHHHcCCCCCcceEEEeCCc
Q 029834 85 VDWVKNHQIRKLVVVG-VCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 135 (187)
Q Consensus 85 ~~~L~~~gi~~lii~G-v~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da 135 (187)
.+..+++|+++|+-+| ...|.|.- ++.-+..+|+ +++++.+.
T Consensus 59 l~~a~~~G~~~vvs~G~s~GN~g~a----lA~aa~~~G~-----~~~iv~~~ 101 (337)
T PRK12390 59 VPDALAQGADTLVSIGGVQSNHTRQ----VAAVAAHLGM-----KCVLVQEN 101 (337)
T ss_pred HHHHHHcCCCEEEEeCCCccHHHHH----HHHHHHHcCC-----eEEEEeCC
Confidence 3344568999988775 66788776 8889999999 88888654
No 57
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=35.74 E-value=53 Score=29.12 Aligned_cols=92 Identities=11% Similarity=0.074 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhCCCcEEEEeeeCCCCCCCC--CCCCCccCCCCCCccccccccccCCCceEEEeCCccccccccccCCCc
Q 029834 4 ESARLARAFCDRRLPVMAFLDTHHPNKPED--PYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGS 81 (187)
Q Consensus 4 ~i~~li~~~r~~g~pVv~t~d~h~~~~~~~--~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~~~~~~~~~ 81 (187)
.+..|.+.+++.|+|++-+ .|.....+. .+.+.-..|+.-..-.+-|..........++.++.+++...-
T Consensus 170 ~l~~L~~~~~~~Gl~~~t~--v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~------ 241 (360)
T PRK12595 170 GLKILKQVADEYGLAVISE--IVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEF------ 241 (360)
T ss_pred HHHHHHHHHHHcCCCEEEe--eCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHH------
Confidence 4556777788888888876 554433220 111111123322222222222211111244444433444321
Q ss_pred chHHHHHHhCCCcEEEEe--eeec
Q 029834 82 NVFVDWVKNHQIRKLVVV--GVCT 103 (187)
Q Consensus 82 t~L~~~L~~~gi~~lii~--Gv~T 103 (187)
..-.+++.+.|.++|+|| |+.+
T Consensus 242 ~~Ave~i~~~Gn~~i~L~erg~s~ 265 (360)
T PRK12595 242 IYAAEYIMSQGNGQIILCERGIRT 265 (360)
T ss_pred HHHHHHHHHCCCCCEEEECCccCC
Confidence 123356667888889998 7765
No 58
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=35.53 E-value=66 Score=29.01 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=39.8
Q ss_pred HhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCCcHHHHHHHHHHHH
Q 029834 89 KNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMA 168 (187)
Q Consensus 89 ~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~~~~~~h~~~l~~~ 168 (187)
++.|.+.+|+.-=+.+.++- ++.-+..+|+ +++|+...... +. ....+..|
T Consensus 106 ~~~G~~~vI~etgsGnhG~A----~A~aaa~~Gl-----~~~I~m~~~d~---~~-----------------q~~nv~~m 156 (402)
T PRK13028 106 KRMGKKRLIAETGAGQHGVA----TATAAALFGL-----ECEIYMGEVDI---ER-----------------QHPNVFRM 156 (402)
T ss_pred HHcCCCeEEEecCcHHHHHH----HHHHHHHcCC-----CEEEEECCCcc---hh-----------------hHHHHHHH
Confidence 44677788774445567776 7888888999 88888665321 10 12235577
Q ss_pred HHcCcEeecc
Q 029834 169 KERGAKIANQ 178 (187)
Q Consensus 169 ~~~~~~v~~~ 178 (187)
+..||+|+..
T Consensus 157 r~~GAeVi~v 166 (402)
T PRK13028 157 KLLGAEVVPV 166 (402)
T ss_pred HHcCCEEEEE
Confidence 8888887643
No 59
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=34.77 E-value=1.1e+02 Score=26.33 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=33.0
Q ss_pred HHHHHHhCCCcEEEEee-eecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 84 FVDWVKNHQIRKLVVVG-VCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 84 L~~~L~~~gi~~lii~G-v~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
+....+++|+.+|+-+| ...|.|.- ++.-+..+|+ +++++.+-..
T Consensus 57 ~l~~a~~~G~~~vvs~ggs~gN~g~a----lA~~a~~~Gl-----~~~iv~~~~~ 102 (337)
T TIGR01274 57 LIPDAQAQGCTTLVSIGGIQSNQTRQ----VAAVAAHLGM-----KCVLVQENWV 102 (337)
T ss_pred HHHHHHHcCCCEEEECCCCcchHHHH----HHHHHHHcCC-----cEEEEeccCC
Confidence 33344568999888764 66788876 8888999999 8888776543
No 60
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=34.73 E-value=67 Score=22.98 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhCCCcEEEE
Q 029834 3 NESARLARAFCDRRLPVMAF 22 (187)
Q Consensus 3 ~~i~~li~~~r~~g~pVv~t 22 (187)
+.+.++++.+|++|.+||.+
T Consensus 61 ~~~~~~~~~a~~~g~~vi~i 80 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAI 80 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEE
Confidence 56788999999999999988
No 61
>PRK06260 threonine synthase; Validated
Probab=34.34 E-value=82 Score=27.98 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=40.7
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCc
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 135 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da 135 (187)
.++-|.. ++. +++++|.++..+...++++|.++|+. --..|.+.- .+.-+...|+ +++|+.+.
T Consensus 84 ~l~~K~E~~nP-TGSfKdRga~~~v~~a~~~g~~~vv~-aSsGN~g~a----lA~~aa~~G~-----~~~i~vP~ 147 (397)
T PRK06260 84 ELYVKHEGANP-TGSFKDRGMTVGVTKALELGVKTVAC-ASTGNTSAS----LAAYAARAGL-----KCYVLLPA 147 (397)
T ss_pred cEEEEeCCCCC-CcCcHHHHHHHHHHHHHHcCCCEEEE-eCCcHHHHH----HHHHHHHcCC-----cEEEEEeC
Confidence 4555643 455 47777776555556666788876654 455566544 5666777899 77777764
No 62
>PLN00011 cysteine synthase
Probab=33.90 E-value=1.5e+02 Score=25.48 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=43.2
Q ss_pred EEEeCC-ccccccccccCCCcchHHHHHHhCC-----CcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCc
Q 029834 62 TIRRKD-CFDGYFGSIEDDGSNVFVDWVKNHQ-----IRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 135 (187)
Q Consensus 62 ~vi~K~-~~saf~~~~~~~~~t~L~~~L~~~g-----i~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da 135 (187)
.++-|. ..+. ++++++.+...+...+.++| .++| |+.-..|.|.- .+.-+..+|+ +++++.+-
T Consensus 33 ~i~~K~E~~nP-tGS~K~R~a~~~l~~a~~~g~~~~g~~~v-v~aSsGN~g~a----lA~~a~~~G~-----~~~ivvp~ 101 (323)
T PLN00011 33 RIAAKLEMMEP-CSSVKDRIAYSMIKDAEDKGLITPGKSTL-IEATAGNTGIG----LACIGAARGY-----KVILVMPS 101 (323)
T ss_pred eEEEEecccCC-ccccchHHHHHHHHHHHHcCCCCCCCcEE-EEeCCChHHHH----HHHHHHHcCC-----eEEEEeCC
Confidence 355554 3455 46666655455555555565 4555 56788888877 7778888999 88888776
Q ss_pred ccc
Q 029834 136 CAT 138 (187)
Q Consensus 136 ~~s 138 (187)
..+
T Consensus 102 ~~~ 104 (323)
T PLN00011 102 TMS 104 (323)
T ss_pred CCC
Confidence 543
No 63
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=33.88 E-value=32 Score=20.08 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=10.3
Q ss_pred chHHHHHHhCCCc
Q 029834 82 NVFVDWVKNHQIR 94 (187)
Q Consensus 82 t~L~~~L~~~gi~ 94 (187)
.+|..||.++||.
T Consensus 7 ~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 7 SDLKSWLKSHGIP 19 (38)
T ss_pred HHHHHHHHHcCCC
Confidence 3799999988764
No 64
>PRK06110 hypothetical protein; Provisional
Probab=33.68 E-value=1.1e+02 Score=26.22 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=38.6
Q ss_pred EEeCC-ccccccccccCCCcchHHHHHHhCC-CcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 63 IRRKD-CFDGYFGSIEDDGSNVFVDWVKNHQ-IRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 63 vi~K~-~~saf~~~~~~~~~t~L~~~L~~~g-i~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
++-|. ..+.+ +++++.+.......+.+.+ ...-+++.-..|.|.- .+.-+..+|+ +++|+.+...
T Consensus 38 i~~K~E~~npt-GS~K~Rga~~~l~~a~~~~~~~~~vv~aSsGN~g~a----lA~~a~~~G~-----~~~ivvp~~~ 104 (322)
T PRK06110 38 VWVKHENHTPT-GAFKVRGGLVYFDRLARRGPRVRGVISATRGNHGQS----VAFAARRHGL-----AATIVVPHGN 104 (322)
T ss_pred EEEEeccCCCc-CCcHHHHHHHHHHHhhhhcCCCceEEEECCCHHHHH----HHHHHHHcCC-----CEEEEEcCCC
Confidence 44453 33443 5555544333333333332 2344788888888887 7778888999 8888866543
No 65
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=32.75 E-value=54 Score=26.83 Aligned_cols=28 Identities=4% Similarity=-0.132 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeeCCCCC
Q 029834 3 NESARLARAFCDRRLPVMAFLDTHHPNK 30 (187)
Q Consensus 3 ~~i~~li~~~r~~g~pVv~t~d~h~~~~ 30 (187)
.+..++++.+++.|.|++...|.|.+..
T Consensus 154 ~~~~~~~~~~~~~g~piiisSdAh~~~~ 181 (237)
T PRK00912 154 SNFRDNLALARKYDFPLVLTSGAMSCYD 181 (237)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCCcccc
Confidence 3456799999999999999999998754
No 66
>PRK07409 threonine synthase; Validated
Probab=32.36 E-value=1.1e+02 Score=26.59 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=40.6
Q ss_pred EEEeCC-ccccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcc
Q 029834 62 TIRRKD-CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 136 (187)
Q Consensus 62 ~vi~K~-~~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~ 136 (187)
.++-|- ..+. .+++++.+...+...+.+.|.++ ||+.-..|.+.- .+.-+...|+ +++++....
T Consensus 47 ~i~~K~E~~np-tGSfKdR~a~~~l~~a~~~g~~~-iv~aSsGN~g~a----lA~~a~~~G~-----~~~ivvP~~ 111 (353)
T PRK07409 47 EVYVKYEGLNP-TGSFKDRGMTMAVTKAKEEGAKA-VICASTGNTSAS----AAAYAARAGL-----KAFVLIPEG 111 (353)
T ss_pred eEEEEecCCCC-ccchHHHHHHHHHHHHHHCCCCE-EEEECCcHHHHH----HHHHHHHcCC-----CEEEEEcCC
Confidence 455564 3444 46677665555555566677665 455577777654 6777788999 777776643
No 67
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=31.77 E-value=1.3e+02 Score=25.97 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=30.6
Q ss_pred HHHHhCCCcEEEE-eeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCc
Q 029834 86 DWVKNHQIRKLVV-VGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 135 (187)
Q Consensus 86 ~~L~~~gi~~lii-~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da 135 (187)
...+++|.++|+. .+-..|.+.- .+..+..+|+ +++++...
T Consensus 63 ~~a~~~G~~~vv~~~~ssGN~g~a----lA~~a~~~G~-----~~~ivvp~ 104 (329)
T PRK14045 63 GDALSRGADVVITVGAVHSNHAFV----TGLAAKKLGL-----DAVLVLRG 104 (329)
T ss_pred HHHHHcCCCEEEEeCccHHHHHHH----HHHHHHHcCC-----eEEEEEeC
Confidence 3444578898885 5667777766 8888889999 78887774
No 68
>PRK05638 threonine synthase; Validated
Probab=30.95 E-value=1.6e+02 Score=26.63 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=41.7
Q ss_pred EEEeCC-ccccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcc
Q 029834 62 TIRRKD-CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 136 (187)
Q Consensus 62 ~vi~K~-~~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~ 136 (187)
.++-|. ..+. +++++|.++..+.....+.|.++|+. .-..|.+.- .+.-+...|+ +++|+.+.-
T Consensus 81 ~l~~K~E~~nP-tGSfKdR~a~~~i~~a~~~g~~~vv~-aSsGN~g~a----lA~~aa~~G~-----~~~i~vp~~ 145 (442)
T PRK05638 81 NVYIKDETRNP-TGSFRDRLATVAVSYGLPYAANGFIV-ASDGNAAAS----VAAYSARAGK-----EAFVVVPRK 145 (442)
T ss_pred eEEEEeCCCCC-CCChHHHHHHHHHHHHHHcCCCEEEE-eCCChHHHH----HHHHHHHcCC-----CEEEEEeCC
Confidence 455564 3466 47777766555555455668777654 566677765 5667778899 777777653
No 69
>PLN02970 serine racemase
Probab=30.69 E-value=1.1e+02 Score=26.51 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=38.4
Q ss_pred EEEeCCccccccccccCCCcchHHHHH-HhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcc
Q 029834 62 TIRRKDCFDGYFGSIEDDGSNVFVDWV-KNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 136 (187)
Q Consensus 62 ~vi~K~~~saf~~~~~~~~~t~L~~~L-~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~ 136 (187)
.++-|..+--..+++++.+...+...+ ++.+.+.|+.+ -..|.+.- .+.-+..+|+ +++|+..-.
T Consensus 43 ~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~~~vv~a-SsGN~g~a----lA~~a~~~G~-----~~~ivvp~~ 108 (328)
T PLN02970 43 SLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTH-SSGNHAAA----LALAAKLRGI-----PAYIVVPKN 108 (328)
T ss_pred eEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcCCeEEEE-CCcHHHHH----HHHHHHHcCC-----CEEEEECCC
Confidence 355564432224666665444443333 34555665544 46777765 6777888999 788877754
No 70
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.83 E-value=85 Score=22.38 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhCCCcEEEE
Q 029834 3 NESARLARAFCDRRLPVMAF 22 (187)
Q Consensus 3 ~~i~~li~~~r~~g~pVv~t 22 (187)
+.+.+.++.++++|.+||.+
T Consensus 60 ~e~~~~~~~a~~~g~~vi~i 79 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAI 79 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEE
Confidence 46788999999999999987
No 71
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=29.54 E-value=94 Score=29.53 Aligned_cols=61 Identities=10% Similarity=0.087 Sum_probs=41.7
Q ss_pred HhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCCcHHHHHHHHHHHH
Q 029834 89 KNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHHVGLYMA 168 (187)
Q Consensus 89 ~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~~~~~~h~~~l~~~ 168 (187)
++.|.+++++..=+.+.++- ++.-+..+|+ +++|+...... +. ....+..|
T Consensus 314 ~~~g~~~vi~e~gsGnhG~A----~A~~aa~~Gl-----~~~I~m~~~~~---~~-----------------~~~nv~~m 364 (610)
T PRK13803 314 KRMGKTRIIAETGAGQHGVA----TATACALFGL-----KCTIFMGEEDI---KR-----------------QALNVERM 364 (610)
T ss_pred HHcCCCEEEEecChHHHHHH----HHHHHHHcCC-----cEEEEEeCCcc---cc-----------------hhhHHHHH
Confidence 45678888875445778876 8888889999 88888764421 10 12235688
Q ss_pred HHcCcEeecc
Q 029834 169 KERGAKIANQ 178 (187)
Q Consensus 169 ~~~~~~v~~~ 178 (187)
+..||+|+-.
T Consensus 365 ~~~GA~Vi~v 374 (610)
T PRK13803 365 KLLGANVIPV 374 (610)
T ss_pred HHCCCEEEEE
Confidence 8888888753
No 72
>PRK06352 threonine synthase; Validated
Probab=29.48 E-value=1.1e+02 Score=26.78 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=40.1
Q ss_pred EEEeCC-ccccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCc
Q 029834 62 TIRRKD-CFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAA 135 (187)
Q Consensus 62 ~vi~K~-~~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da 135 (187)
.++-|- .++. .+++++.+...+...+.++|.++|+-+ -..|.+.- .+.-+..+|+ +++|+..-
T Consensus 44 ~l~~K~E~~np-tGS~KdR~a~~~i~~a~~~g~~~vV~a-SsGN~G~A----lA~~aa~~G~-----~~~ivvp~ 107 (351)
T PRK06352 44 TLYGKYEGLNP-TGSFKDRGMVMAVAKAKEEGAEAVICA-STGNTSAA----AAAYATRAGL-----KAYIVIPE 107 (351)
T ss_pred eEEEEecCCCC-ccChHHHHHHHHHHHHHHCCCCEEEEE-CCcHHHHH----HHHHHHHcCC-----cEEEEEeC
Confidence 355564 3455 356666554445455556787775544 56777743 6777888999 78877754
No 73
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.19 E-value=75 Score=20.84 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhCCCcEEEE
Q 029834 3 NESARLARAFCDRRLPVMAF 22 (187)
Q Consensus 3 ~~i~~li~~~r~~g~pVv~t 22 (187)
+.+.++++.+|++|.++|.+
T Consensus 61 ~~~~~~~~~a~~~g~~ii~i 80 (87)
T cd04795 61 EELLAALEIAKELGIPVIAI 80 (87)
T ss_pred HHHHHHHHHHHHcCCeEEEE
Confidence 56788999999999999876
No 74
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=28.61 E-value=1.7e+02 Score=25.71 Aligned_cols=19 Identities=5% Similarity=0.118 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhCCCcEEEE
Q 029834 4 ESARLARAFCDRRLPVMAF 22 (187)
Q Consensus 4 ~i~~li~~~r~~g~pVv~t 22 (187)
....|.+.+++.|++++-+
T Consensus 77 ~~~~L~~~~~~~Gi~~~st 95 (329)
T TIGR03569 77 DHRELKEYCESKGIEFLST 95 (329)
T ss_pred HHHHHHHHHHHhCCcEEEE
Confidence 4567889999999999988
No 75
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=27.92 E-value=71 Score=22.40 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=16.0
Q ss_pred HHHHHHHHhhCCCcEEEE
Q 029834 5 SARLARAFCDRRLPVMAF 22 (187)
Q Consensus 5 i~~li~~~r~~g~pVv~t 22 (187)
+..+...|.++++|++|+
T Consensus 44 v~~l~~lceek~Ip~v~V 61 (84)
T PRK13600 44 MTRVLSQINQKNIPVSFF 61 (84)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 467888999999999999
No 76
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=27.22 E-value=95 Score=25.03 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhCCCcEEEE
Q 029834 3 NESARLARAFCDRRLPVMAF 22 (187)
Q Consensus 3 ~~i~~li~~~r~~g~pVv~t 22 (187)
+++.++++.+|++|+|||.+
T Consensus 123 ~~v~~a~~~Ak~~G~~vI~I 142 (196)
T PRK10886 123 RDIVKAVEAAVTRDMTIVAL 142 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 57889999999999999987
No 77
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=27.00 E-value=1.7e+02 Score=25.23 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=30.8
Q ss_pred HHHHhCCCcEEEEee-eecCceeccchhhHHHHHHcCCCCCcceEEEeCCcccc
Q 029834 86 DWVKNHQIRKLVVVG-VCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACAT 138 (187)
Q Consensus 86 ~~L~~~gi~~lii~G-v~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s 138 (187)
...+++|.++|+-+| -..|.+.- .+..+..+|+ +++++.+...+
T Consensus 57 ~~a~~~g~~~vvt~g~s~gN~g~a----lA~~a~~~G~-----~~~i~vp~~~~ 101 (331)
T PRK03910 57 ADALAQGADTLITAGAIQSNHARQ----TAAAAAKLGL-----KCVLLLENPVP 101 (331)
T ss_pred HHHHHcCCCEEEEcCcchhHHHHH----HHHHHHHhCC-----cEEEEEcCCCC
Confidence 334457889888655 33466655 6777888999 88888877654
No 78
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=25.90 E-value=1.5e+02 Score=23.75 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=32.7
Q ss_pred hHHHHHHcCCCCCcceEEEeCC----ccccCCccchhhhhcccccCCcHHHHHHHHHHHHHHcCcEe
Q 029834 113 STMSARNRGFLRPLEEVVVYSA----ACATFDIPTHVATHTKGALAHPQEFMHHVGLYMAKERGAKI 175 (187)
Q Consensus 113 Ta~~a~~~G~~~~~~~V~Vv~D----a~~s~~~~~~~a~~~~~~~~~~~~~~h~~~l~~~~~~~~~v 175 (187)
..+...+.|| +++|+++ +...++. .++..+|+.-+..++..|+++
T Consensus 39 al~~l~~~gy-----~lVvvTNQsGi~rgyf~~-------------~~f~~~~~~m~~~l~~~gv~i 87 (181)
T COG0241 39 ALLKLQRAGY-----KLVVVTNQSGIGRGYFTE-------------ADFDKLHNKMLKILASQGVKI 87 (181)
T ss_pred HHHHHHhCCC-----eEEEEECCCCccccCccH-------------HHHHHHHHHHHHHHHHcCCcc
Confidence 4455558899 9999998 3333332 257788999999999999864
No 79
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=25.86 E-value=75 Score=27.94 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=32.0
Q ss_pred EEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCcc
Q 029834 95 KLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIP 142 (187)
Q Consensus 95 ~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~ 142 (187)
+|.|+|=+.=+.-- |+++..+.|| +|+|+-+.+.+....
T Consensus 2 ~iLVtGGAGYIGSH----tv~~Ll~~G~-----~vvV~DNL~~g~~~~ 40 (329)
T COG1087 2 KVLVTGGAGYIGSH----TVRQLLKTGH-----EVVVLDNLSNGHKIA 40 (329)
T ss_pred eEEEecCcchhHHH----HHHHHHHCCC-----eEEEEecCCCCCHHH
Confidence 57788877766655 8999999999 999999999886553
No 80
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=25.73 E-value=1.9e+02 Score=24.85 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=33.5
Q ss_pred cccccCCCcchHHHHHH-hCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcccc
Q 029834 73 FGSIEDDGSNVFVDWVK-NHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACAT 138 (187)
Q Consensus 73 ~~~~~~~~~t~L~~~L~-~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s 138 (187)
.+++++.+...+...+. +.+.+. +++.-..|.+.- .+.-+..+|+ +++|+.....+
T Consensus 46 tGS~K~R~a~~~i~~~~~~~~~~~-vv~aSsGN~g~a----lA~~a~~~G~-----~~~v~~p~~~~ 102 (317)
T TIGR02991 46 TGSFKLRGATNAVLSLSDTQRAAG-VVAASTGNHGRA----LAYAAAEEGV-----RATICMSELVP 102 (317)
T ss_pred CCCcHHHHHHHHHHhhhHhccCCe-EEEECCCHHHHH----HHHHHHHhCC-----CEEEEcCCCCC
Confidence 35555544333333332 344455 446666777766 6778888999 88888875543
No 81
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=25.31 E-value=89 Score=27.67 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=35.1
Q ss_pred CcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccch
Q 029834 93 IRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTH 144 (187)
Q Consensus 93 i~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~ 144 (187)
..+|.|+|-+. +|=- .|+....+.|| +|+++-+-+-++.+...
T Consensus 2 ~~~VLVtGgaG-yiGs---ht~l~L~~~gy-----~v~~vDNl~n~~~~sl~ 44 (343)
T KOG1371|consen 2 GKHVLVTGGAG-YIGS---HTVLALLKRGY-----GVVIVDNLNNSYLESLK 44 (343)
T ss_pred CcEEEEecCCc-ceeh---HHHHHHHhCCC-----cEEEEecccccchhHHH
Confidence 46789999775 4555 59999999999 99999999999876544
No 82
>KOG3406 consensus 40S ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=25.14 E-value=97 Score=23.60 Aligned_cols=38 Identities=13% Similarity=0.333 Sum_probs=27.4
Q ss_pred HHHHHHHHH-HhhCCCcEEEEeeeCCCCCCC-CCCCCCccCCCCC
Q 029834 3 NESARLARA-FCDRRLPVMAFLDTHHPNKPE-DPYPTHCIAGTHE 45 (187)
Q Consensus 3 ~~i~~li~~-~r~~g~pVv~t~d~h~~~~~~-~~~p~hc~~gt~G 45 (187)
|++.+|+++ +.++.+|+|-+ ++... +-|-..|...++|
T Consensus 63 p~yvKLVeALcaeh~iplikV-----~d~k~LGew~Glckid~eG 102 (134)
T KOG3406|consen 63 PMYVKLVEALCAEHQIPLIKV-----GDAKELGEWAGLCKIDSEG 102 (134)
T ss_pred hHHHHHHHHHHhhcCCCeEEe-----ccchhhhhhhceeeecCCC
Confidence 677888886 66789999988 22222 3588888887777
No 83
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=25.12 E-value=1.1e+02 Score=26.11 Aligned_cols=64 Identities=16% Similarity=0.093 Sum_probs=40.9
Q ss_pred EEEeCCc-cccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcc
Q 029834 62 TIRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 136 (187)
Q Consensus 62 ~vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~ 136 (187)
.++-|.. .+. .++++|.+...+...+.+.|..+ +|+.-..|.+.- .+.-+...|+ +++|+..-.
T Consensus 40 ~i~~K~E~~np-tGSfKdR~a~~~l~~a~~~g~~~-vv~aSsGN~g~a----~A~~a~~~g~-----~~~v~~p~~ 104 (328)
T TIGR00260 40 NLYVLELFHNP-TLSFKDRGMAVALTKALELGNDT-VLCASTGNTGAA----AAAYAGKAGV-----KVVILYPAG 104 (328)
T ss_pred cEEehhhccCC-chhhHhhhHHHHHHHHHHcCCCE-EEEeCCcHHHHH----HHHHhccCCC-----cEEEEECCC
Confidence 3555643 343 56667665455555555667554 566667788877 5566777999 788876654
No 84
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=23.91 E-value=1.2e+02 Score=25.51 Aligned_cols=94 Identities=12% Similarity=0.064 Sum_probs=55.8
Q ss_pred HHHHHHHhhCCCcE-EEEeeeCCCCCCCCCCCCCccCCCCCCccccccccccCCCceEEEeCCccccccccccCCCcchH
Q 029834 6 ARLARAFCDRRLPV-MAFLDTHHPNKPEDPYPTHCIAGTHESNLVPALQWIEKEPNVTIRRKDCFDGYFGSIEDDGSNVF 84 (187)
Q Consensus 6 ~~li~~~r~~g~pV-v~t~d~h~~~~~~~~~p~hc~~gt~G~~l~~~L~~~~~~~~~~vi~K~~~saf~~~~~~~~~t~L 84 (187)
.+-++.|++.+.|| |++|+.|. ++..-|+.... -.+.-+..|+|+ -++
T Consensus 115 ~~ql~lA~~~~lPviIH~R~A~~-------------------d~~~iL~~~~~------~~~gi~HcFsGs------~e~ 163 (256)
T COG0084 115 EAQLELAKELNLPVIIHTRDAHE-------------------DTLEILKEEGA------PVGGVLHCFSGS------AEE 163 (256)
T ss_pred HHHHHHHHHcCCCEEEEccccHH-------------------HHHHHHHhcCC------CCCEEEEccCCC------HHH
Confidence 45577888889884 46766543 22333332210 134456678886 356
Q ss_pred HHHHHhCCCcEEEEeeeecCceeccchh--hHHHHHHcCCCCCcceEEEeCCccccCC
Q 029834 85 VDWVKNHQIRKLVVVGVCTDICVLDFVC--STMSARNRGFLRPLEEVVVYSAACATFD 140 (187)
Q Consensus 85 ~~~L~~~gi~~lii~Gv~Td~CV~~~~~--Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~ 140 (187)
.+.+-+.| +..|+.+.++-. . -.+..... .|..++.+=+|+=--.+
T Consensus 164 a~~~~d~G----~yisisG~itfk---~a~~~~ev~~~---iPldrLL~ETDsPyl~P 211 (256)
T COG0084 164 ARKLLDLG----FYISISGIVTFK---NAEKLREVARE---LPLDRLLLETDAPYLAP 211 (256)
T ss_pred HHHHHHcC----eEEEECceeecC---CcHHHHHHHHh---CCHhHeEeccCCCCCCC
Confidence 66665666 777888888887 3 23333322 37778888888755433
No 85
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=23.73 E-value=2.9e+02 Score=22.80 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.7
Q ss_pred HHHHHHHhhCCCcEEEE
Q 029834 6 ARLARAFCDRRLPVMAF 22 (187)
Q Consensus 6 ~~li~~~r~~g~pVv~t 22 (187)
..|.++++++++|+|.+
T Consensus 117 ~~L~~~c~~~~ip~I~s 133 (231)
T cd00755 117 VALIAYCRKRKIPVISS 133 (231)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 56888999999999987
No 86
>PRK06361 hypothetical protein; Provisional
Probab=23.56 E-value=56 Score=26.00 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.5
Q ss_pred HHHHHHHhhCCCcEEEEeeeCCCC
Q 029834 6 ARLARAFCDRRLPVMAFLDTHHPN 29 (187)
Q Consensus 6 ~~li~~~r~~g~pVv~t~d~h~~~ 29 (187)
.++++.+++.|+|++...|.|.+.
T Consensus 151 ~~~l~~a~~~gi~vv~~SDaH~~~ 174 (212)
T PRK06361 151 GHVARIAREAGAPLVINTDTHAPS 174 (212)
T ss_pred HHHHHHHHHhCCcEEEECCCCCHH
Confidence 468889999999999999999644
No 87
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.47 E-value=1.2e+02 Score=23.38 Aligned_cols=23 Identities=9% Similarity=-0.023 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEeee
Q 029834 3 NESARLARAFCDRRLPVMAFLDT 25 (187)
Q Consensus 3 ~~i~~li~~~r~~g~pVv~t~d~ 25 (187)
+.+.++++.++++|.+||.+.+.
T Consensus 89 ~~~i~~~~~ak~~g~~iI~IT~~ 111 (179)
T cd05005 89 SSVVNAAEKAKKAGAKVVLITSN 111 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECC
Confidence 56788999999999999988443
No 88
>TIGR02589 cas_Csd2 CRISPR-associated protein, Csd2 family. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csd2 protein of the Dvulg subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02590, the Csh2 protein of the Hmari CRISPR subtype.
Probab=23.15 E-value=79 Score=27.30 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=24.4
Q ss_pred eeeecCceeccchhhHHHHHHc--CCCCCcceEEEeCCc
Q 029834 99 VGVCTDICVLDFVCSTMSARNR--GFLRPLEEVVVYSAA 135 (187)
Q Consensus 99 ~Gv~Td~CV~~~~~Ta~~a~~~--G~~~~~~~V~Vv~Da 135 (187)
.|+.||+|++ -++|+-+.. |+ .|.|=++.
T Consensus 33 ~glVSDV~LK---RkIRd~l~~~~g~-----~IfV~~~~ 63 (284)
T TIGR02589 33 HGLVTDVSLK---RKIRNRVLLMGGQ-----DIFVQEKA 63 (284)
T ss_pred CEEECcceec---HHHHHHHHhcCCc-----eEEEEecc
Confidence 4889999999 999999876 79 88886654
No 89
>PRK03670 competence damage-inducible protein A; Provisional
Probab=22.89 E-value=1.8e+02 Score=24.47 Aligned_cols=82 Identities=13% Similarity=-0.043 Sum_probs=45.4
Q ss_pred hHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccccCCccchhhhhcccccCCcHHHHHH
Q 029834 83 VFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACATFDIPTHVATHTKGALAHPQEFMHH 162 (187)
Q Consensus 83 ~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s~~~~~~~a~~~~~~~~~~~~~~h~ 162 (187)
-|..+|++.|++ +.-+++..|---. ...+++.+...++ ++++.+ +-.+.+......+++..+...+.. +|+
T Consensus 24 ~la~~L~~~G~~-v~~~~iV~Dd~~~-I~~~l~~a~~~~~-----DlVItt-GGlGpt~dD~T~eava~a~g~~l~-~~~ 94 (252)
T PRK03670 24 FIAQKLTEKGYW-VRRITTVGDDVEE-IKSVVLEILSRKP-----EVLVIS-GGLGPTHDDVTMLAVAEALGRELV-LCE 94 (252)
T ss_pred HHHHHHHHCCCE-EEEEEEcCCCHHH-HHHHHHHHhhCCC-----CEEEEC-CCccCCCCCchHHHHHHHhCCCCc-CCH
Confidence 488889999987 4445555543321 0034556666678 788888 444555544433333222222222 366
Q ss_pred HHHHHHHHcCc
Q 029834 163 VGLYMAKERGA 173 (187)
Q Consensus 163 ~~l~~~~~~~~ 173 (187)
.++..++.++.
T Consensus 95 e~~~~i~~~~~ 105 (252)
T PRK03670 95 DCLERIKEFYE 105 (252)
T ss_pred HHHHHHHHHHH
Confidence 77766666553
No 90
>PRK08813 threonine dehydratase; Provisional
Probab=22.64 E-value=2e+02 Score=25.36 Aligned_cols=67 Identities=13% Similarity=-0.074 Sum_probs=39.3
Q ss_pred EEeCCccccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcccc
Q 029834 63 IRRKDCFDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACAT 138 (187)
Q Consensus 63 vi~K~~~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s 138 (187)
++-|....--.+++++.+.......+.+.+..+-+++.=..|...- -+..+..+|+ +++|+.....+
T Consensus 50 v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~~VV~aSsGN~G~a----lA~aa~~~Gi-----~~~IvvP~~~~ 116 (349)
T PRK08813 50 VWLKLENLQRTGSYKVRGALNALLAGLERGDERPVICASAGNHAQG----VAWSAYRLGV-----QAITVMPHGAP 116 (349)
T ss_pred EEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCCeEEEECCCHHHHH----HHHHHHHcCC-----CEEEEEcCCCC
Confidence 4445433223466666554455555555555544666666655554 5677778999 78877765443
No 91
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=22.01 E-value=1.1e+02 Score=25.82 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeeC
Q 029834 3 NESARLARAFCDRRLPVMAFLDTH 26 (187)
Q Consensus 3 ~~i~~li~~~r~~g~pVv~t~d~h 26 (187)
.++.++++.|.+.++|||+..|.-
T Consensus 85 rKa~R~~~lA~~~~lPvV~lvDtp 108 (256)
T PRK12319 85 RKALRLMKQAEKFGRPVVTFINTA 108 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECC
Confidence 467899999999999999996653
No 92
>PRK08638 threonine dehydratase; Validated
Probab=21.40 E-value=2e+02 Score=24.97 Aligned_cols=65 Identities=15% Similarity=0.036 Sum_probs=36.1
Q ss_pred EEeCCc-cccccccccCCCcchHHHHHHh-CCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcccc
Q 029834 63 IRRKDC-FDGYFGSIEDDGSNVFVDWVKN-HQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACAT 138 (187)
Q Consensus 63 vi~K~~-~saf~~~~~~~~~t~L~~~L~~-~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~s 138 (187)
++-|.. ++. .++++|.++......+.+ .+.+.|+ +.-..|.++- .+.-+..+|+ +++|+.+...+
T Consensus 44 i~~K~E~~np-tGS~KdR~a~~~i~~~~~~~~~~~vv-~~SsGN~g~a----lA~~aa~~G~-----~~~iv~p~~~~ 110 (333)
T PRK08638 44 IFLKLENMQR-TGSFKIRGAFNKLSSLTDAEKRKGVV-ACSAGNHAQG----VALSCALLGI-----DGKVVMPKGAP 110 (333)
T ss_pred EEEEeccCCc-cCCcHHHHHHHHHHhccHHhcCCeEE-EeCCcHHHHH----HHHHHHHcCC-----CEEEEeCCCCc
Confidence 455543 333 355555443333333332 4455544 4444677665 6778888999 78887775443
No 93
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=21.31 E-value=1.9e+02 Score=25.25 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=36.7
Q ss_pred EEeCCc-cccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCccc
Q 029834 63 IRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAACA 137 (187)
Q Consensus 63 vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~~ 137 (187)
++-|.. .+. .+++++.++......+.+.+..+-+|+--+.|.+.- -+.-|..+|+ +++++.....
T Consensus 17 i~~K~E~~~p-tgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~a----lA~~a~~~G~-----~~~iv~p~~~ 82 (380)
T TIGR01127 17 VYLKLENLQK-TGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQG----VAYAAKKFGI-----KAVIVMPESA 82 (380)
T ss_pred EEEEecCCCC-CCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHH----HHHHHHHcCC-----CEEEEEcCCC
Confidence 444543 232 345555443444444444444333555556777755 6777888999 7777776644
No 94
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=20.76 E-value=96 Score=24.60 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=9.2
Q ss_pred hHHHHHHhCCCcEEEEee
Q 029834 83 VFVDWVKNHQIRKLVVVG 100 (187)
Q Consensus 83 ~L~~~L~~~gi~~lii~G 100 (187)
.+.+.|-++|. +|++++
T Consensus 20 ~ia~~l~~~G~-~vi~~~ 36 (248)
T TIGR01832 20 GIAVGLAEAGA-DIVGAG 36 (248)
T ss_pred HHHHHHHHCCC-EEEEEc
Confidence 46666666665 344444
No 95
>PRK06450 threonine synthase; Validated
Probab=20.65 E-value=2.6e+02 Score=24.31 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=38.5
Q ss_pred EEeCCc-cccccccccCCCcchHHHHHHhCCCcEEEEeeeecCceeccchhhHHHHHHcCCCCCcceEEEeCCcc
Q 029834 63 IRRKDC-FDGYFGSIEDDGSNVFVDWVKNHQIRKLVVVGVCTDICVLDFVCSTMSARNRGFLRPLEEVVVYSAAC 136 (187)
Q Consensus 63 vi~K~~-~saf~~~~~~~~~t~L~~~L~~~gi~~lii~Gv~Td~CV~~~~~Ta~~a~~~G~~~~~~~V~Vv~Da~ 136 (187)
++-|.. .+. +++++|.++..+...++++|.++|+.+ -..|..+- -+.-+...|+ +++|+....
T Consensus 67 l~~K~E~~nP-TGSfKDRga~~~i~~a~~~g~~~vv~a-SsGN~g~s----lA~~aa~~G~-----~~~i~vP~~ 130 (338)
T PRK06450 67 IWFKLDFLNP-TGSYKDRGSVTLISYLAEKGIKQISED-SSGNAGAS----IAAYGAAAGI-----EVKIFVPET 130 (338)
T ss_pred EEEEecCCCC-cCCCHHHHHHHHHHHHHHcCCCEEEEE-CCcHHHHH----HHHHHHHcCC-----CEEEEEcCC
Confidence 445644 455 577888776677677777888765433 33333322 4555556899 777776654
No 96
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.65 E-value=3e+02 Score=24.06 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=15.3
Q ss_pred HHHHHHHHhhCCCcEEEE
Q 029834 5 SARLARAFCDRRLPVMAF 22 (187)
Q Consensus 5 i~~li~~~r~~g~pVv~t 22 (187)
..+|.+.+++.|++++-+
T Consensus 79 ~~~L~~~~~~~Gi~~~st 96 (327)
T TIGR03586 79 HKELFERAKELGLTIFSS 96 (327)
T ss_pred HHHHHHHHHHhCCcEEEc
Confidence 356888899999999988
No 97
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=20.62 E-value=1.6e+02 Score=17.80 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEee
Q 029834 3 NESARLARAFCDRRLPVMAFLD 24 (187)
Q Consensus 3 ~~i~~li~~~r~~g~pVv~t~d 24 (187)
.++..+++.+...+ ||+.+++
T Consensus 9 ~~~~~~l~~v~~~~-pv~It~~ 29 (52)
T TIGR01552 9 NKLGELLKRVRDGE-PVTITKR 29 (52)
T ss_pred HHHHHHHHHHHCCC-CEEEEEC
Confidence 45778899998777 9999944
No 98
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=20.20 E-value=1.7e+02 Score=22.19 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhCCCcEEEE
Q 029834 3 NESARLARAFCDRRLPVMAF 22 (187)
Q Consensus 3 ~~i~~li~~~r~~g~pVv~t 22 (187)
+.+.++++.+|++|+++|.+
T Consensus 93 ~~~~~~~~~a~~~g~~ii~i 112 (154)
T TIGR00441 93 KNVLKAIEAAKDKGMKTITL 112 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 46788999999999999987
No 99
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.19 E-value=1.6e+02 Score=22.55 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhCCCcEEEE
Q 029834 3 NESARLARAFCDRRLPVMAF 22 (187)
Q Consensus 3 ~~i~~li~~~r~~g~pVv~t 22 (187)
+.+.++++.++++|.|||.+
T Consensus 86 ~~~i~~~~~ak~~g~~ii~I 105 (179)
T TIGR03127 86 ESLVTVAKKAKEIGATVAAI 105 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEE
Confidence 46788899999999999988
Done!