BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029836
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 314 bits (804), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 147/186 (79%), Positives = 168/186 (90%)
Query: 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
M TS DE QF SMLLKLINAKNTMEIGV+TGYSLLATALAIP+DGKILA+DI KE+YE G
Sbjct: 61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELG 120
Query: 61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
LP+I+KAGV HKIDFREGPALP+LD++I+DEK HG++DF+FVDADKDNY+NYHKRLI+LV
Sbjct: 121 LPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV 180
Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
KVGGVIGYDNTLW GSVVAPPDA L ++ Y RDFV ELNKALAVDPRIEIC + + DG+
Sbjct: 181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGI 240
Query: 181 TLCRRI 186
T+CRRI
Sbjct: 241 TICRRI 246
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/186 (58%), Positives = 140/186 (75%), Gaps = 1/186 (0%)
Query: 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
M TSP Q S +LKL+NAK T+E+GVFTGYSLL TAL+IPDDGKI A+D +E YE G
Sbjct: 52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIG 111
Query: 61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
LP I+KAGV HKI+F E A+ LD L+Q ++ G++DF FVDADK NY+ YH+RL++LV
Sbjct: 112 LPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLV 171
Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
KVGG++ YDNTLWGG+ VA P++++ + R+ V ELNK LA DPRIEI + + DG+
Sbjct: 172 KVGGIVAYDNTLWGGT-VAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGI 230
Query: 181 TLCRRI 186
T CRR+
Sbjct: 231 TFCRRL 236
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 143 bits (360), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 113/187 (60%), Gaps = 7/187 (3%)
Query: 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
M +P++AQF ML++L AK +E+G FTGYS LA +LA+PDDG+++ DI + +
Sbjct: 42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHA 101
Query: 61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
P ++A HKI R GPAL L L+ + H FDF+F+DADK NY+NY++ ++LV
Sbjct: 102 HPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEH-QFDFIFIDADKTNYLNYYELALKLV 160
Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
G+I DN W G V+ P D R+ +++LN+ + D R+ + ++IADG+
Sbjct: 161 TPKGLIAIDNIFWDGKVIDPNDTSGQT-----RE-IKKLNQVIKNDSRVFVSLLAIADGM 214
Query: 181 TLCRRIG 187
L + I
Sbjct: 215 FLVQPIA 221
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 105/185 (56%), Gaps = 11/185 (5%)
Query: 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
M SP++AQF +L+ L AK +EIGVF GYS LA AL +P DG+I+A D
Sbjct: 54 MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIA 113
Query: 61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
QKAGVA KI R GPAL L+QL Q + FD +F+DADK NY Y++ + L+
Sbjct: 114 KKYWQKAGVAEKISLRLGPALATLEQLTQGKPLP-EFDLIFIDADKRNYPRYYEIGLNLL 172
Query: 121 KVGGVIGYDNTLWGGSV--VAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIAD 178
+ GG++ DN LW G V V P +A +Q+ N+ LA D R+ I I + D
Sbjct: 173 RRGGLMVIDNVLWHGKVTEVDPQEAQT--------QVLQQFNRDLAQDERVRISVIPLGD 224
Query: 179 GVTLC 183
G+TL
Sbjct: 225 GMTLA 229
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
MMT ++AQ + L +LI AK +++G FTGYS LA ALA+P DG+++ ++ + E G
Sbjct: 52 MMTC-EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG 110
Query: 61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV 120
P+ ++A HKID R PAL LD+L+ + GTFD VDADK+N Y++R ++L+
Sbjct: 111 RPLWRQAEAEHKIDLRLKPALETLDELLAAGE-AGTFDVAVVDADKENCSAYYERCLQLL 169
Query: 121 KVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGV 180
+ GG++ LW G V+ PP D+ + V+ LN+ + D R+ I + + DG+
Sbjct: 170 RPGGILAVLRVLWRGKVLQPPKGDVAA------ECVRNLNERIRRDVRVYISLLPLGDGL 223
Query: 181 TLCRRI 186
TL +I
Sbjct: 224 TLAFKI 229
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 105/184 (57%), Gaps = 7/184 (3%)
Query: 2 MTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGL 61
T+P++AQ ++L+KL AK ++IG FTGYS +A LA+P DG ++ D+ ++
Sbjct: 47 QTAPEQAQLLALLVKLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAK 106
Query: 62 PIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVK 121
+KAG++ KI R PA L +LI + +D +++DADK N Y++ ++L++
Sbjct: 107 EYWEKAGLSDKIGLRLSPAKDTLAELIHAGQ-AWQYDLIYIDADKANTDLYYEESLKLLR 165
Query: 122 VGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVT 181
GG+I DN L G V + + E+ +R F Q++ K D R++ I I DG+T
Sbjct: 166 EGGLIAVDNVLRRGQVA--DEENQSENNQLIRLFNQKVYK----DERVDXILIPIGDGLT 219
Query: 182 LCRR 185
L R+
Sbjct: 220 LARK 223
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 109/195 (55%), Gaps = 16/195 (8%)
Query: 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
M SP+E QF ++L K+ AK +EIG FTGYS L A A+P+DGKIL D+++E
Sbjct: 42 MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVA 101
Query: 61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY----------HGTFDFVFVDADKDNYV 110
++ G+ +KI + G AL L LI + + D F+DADK+NY
Sbjct: 102 RKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYP 161
Query: 111 NYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIE 170
NY+ +++L+K GG++ DN LW GSV ADL H +++ N+ + D ++
Sbjct: 162 NYYPLILKLLKPGGLLIADNVLWDGSV-----ADLS-HQEPSTVGIRKFNELVYNDSLVD 215
Query: 171 ICQISIADGVTLCRR 185
+ + IADGV+L R+
Sbjct: 216 VSLVPIADGVSLVRK 230
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI 63
+ ++ QF ++L++L AK +EIG GYS + A +P DG++L L+ H +
Sbjct: 48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVAREN 107
Query: 64 IQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG 123
+Q AGV ++ REGPAL L+ L + FD +F+DADK N +Y + + + G
Sbjct: 108 LQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 124 GVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIA-----D 178
+I DN + G VV P A DE +R F++ +PR+ + D
Sbjct: 164 TLIIGDNVVRDGEVVNPQSA--DERVQGVRQFIE----XXGAEPRLTATALQTVGTKGWD 217
Query: 179 GVTLC 183
G TL
Sbjct: 218 GFTLA 222
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI 63
SP + +F +L+++ A+N +EIG GYS + A + G+++ L+ +++H +
Sbjct: 43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN 102
Query: 64 IQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG 123
I++A + +++ R G AL L Q I++EKY FDF+F+DADK N Y + ++L + G
Sbjct: 103 IERANLNDRVEVRTGLALDSLQQ-IENEKYE-PFDFIFIDADKQNNPAYFEWALKLSRPG 160
Query: 124 GVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRI 169
VI DN + G V+ + D +R F + +A +PR+
Sbjct: 161 TVIIGDNVVREGEVI--DNTSNDPRVQGIRRFYE----LIAAEPRV 200
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Query: 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKI 73
LLK +EIG GYS + A A+P+ I++++ + YE+ ++ G+ +I
Sbjct: 49 LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 74 DFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLW 133
+ G AL L ++L + + FD +F+DA K Y + V+ GG+I DN L+
Sbjct: 108 ELLFGDALQLGEKL----ELYPLFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLF 163
Query: 134 GGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLC 183
G +VA D + H L + N+ L P+ + + DG+ +
Sbjct: 164 RG-LVAETDIEHKRH-KQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAIS 211
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK 66
+ Q +++ + +E+G + GYS + A + ++L +++ ++ ++
Sbjct: 46 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNF 105
Query: 67 AGVAHKIDFREGPALPLLDQLIQDEKYH-GTFDFVFVDADKDNYVNYHKRLIE---LVKV 122
AG+ K+ G + L+ QL +KY T D VF+D KD Y+ L+E L++
Sbjct: 106 AGLQDKVTILNGASQDLIPQL--KKKYDVDTLDMVFLDHWKDRYLP-DTLLLEKCGLLRK 162
Query: 123 GGVIGYDNTLWGGS 136
G V+ DN + G+
Sbjct: 163 GTVLLADNVIVPGT 176
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK 66
+ Q +++ + +E+G + GYS + A + ++L +++ ++ ++
Sbjct: 48 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNF 107
Query: 67 AGVAHKIDFREGPALPLLDQLIQDEKYH-GTFDFVFVDADKDNYVNYHKRLIE---LVKV 122
AG+ K+ G + L+ QL +KY T D VF+D KD Y+ L+E L++
Sbjct: 108 AGLQDKVTILNGASQDLIPQL--KKKYDVDTLDMVFLDHWKDRYLP-DTLLLEKCGLLRK 164
Query: 123 GGVIGYDNTLWGGS 136
G V+ DN + G+
Sbjct: 165 GTVLLADNVIVPGT 178
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK 66
+ Q +++ + +E+G + GYS + A + ++L ++I + ++
Sbjct: 46 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF 105
Query: 67 AGVAHKIDFREGPALPLLDQLIQDEKYH-GTFDFVFVDADKDNYVNYHKRLIE---LVKV 122
AG+ K+ G + L+ QL +KY T D VF+D KD Y+ L+E L++
Sbjct: 106 AGLQDKVTILNGASQDLIPQL--KKKYDVDTLDMVFLDHWKDRYLP-DTLLLEKCGLLRK 162
Query: 123 GGVIGYDNTLWGGS 136
G V+ DN + G+
Sbjct: 163 GTVLLADNVIVPGT 176
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 25/161 (15%)
Query: 24 MEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83
+E+G + GYS + A + +++ ++I + ++ AGV K+ G + +
Sbjct: 62 LELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDI 121
Query: 84 LDQLIQDEKYH-GTFDFVFVDADKDNYVNYHKRLIE--LVKVGGVIGYDNTLWGGSVVAP 140
+ QL +KY T D VF+D KD Y+ L E L++ G V+ DN V+ P
Sbjct: 122 IPQL--KKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADN------VICP 173
Query: 141 PDADLDEH--------------FLYLRDFVQELNKALAVDP 167
D H FL R+ V L KA+ P
Sbjct: 174 GAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKAIYKGP 214
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 25/157 (15%)
Query: 24 MEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83
+E+G + GYS + A + +++ ++I + ++ AGV K+ G + +
Sbjct: 65 LELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDI 124
Query: 84 LDQLIQDEKYH-GTFDFVFVDADKDNYVNYHKRLIE--LVKVGGVIGYDNTLWGGSVVAP 140
+ QL +KY T D VF+D KD Y+ L E L++ G V+ DN V+ P
Sbjct: 125 IPQL--KKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADN------VICP 176
Query: 141 PDADLDEH--------------FLYLRDFVQELNKAL 163
D H FL R+ V L KA+
Sbjct: 177 GAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKAI 213
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV 69
L++ N KN +EIG GYS A +I DD + ++ + + +
Sbjct: 62 LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 70 AHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129
+++ EG AL + + D+ Y D +F+DA K + + L+K G++ D
Sbjct: 121 ENQVRIIEGNALEQFEN-VNDKVY----DXIFIDAAKAQSKKFFEIYTPLLKHQGLVITD 175
Query: 130 NTLWGGSV 137
N L+ G V
Sbjct: 176 NVLYHGFV 183
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 25/161 (15%)
Query: 24 MEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83
+E+G + GYS + A + +++ ++I + ++ AG+ K+ G + +
Sbjct: 62 LELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGMKDKVTLVVGASQDI 121
Query: 84 LDQLIQDEKYH-GTFDFVFVDADKDNYVNYHKRLIE--LVKVGGVIGYDNTLWGGSVVAP 140
+ QL +KY T D VF+D KD Y+ L E L++ G V+ DN V+ P
Sbjct: 122 IPQL--KKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADN------VICP 173
Query: 141 PDADLDEH--------------FLYLRDFVQELNKALAVDP 167
D H FL R+ V L KA+ P
Sbjct: 174 GAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKAIYKGP 214
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPII 64
P ++ F +M+L + ++ GV +G A A+ GK+ A + +E + +
Sbjct: 98 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNL 157
Query: 65 QKAGVAHKIDFR 76
K G+ ++ +
Sbjct: 158 TKWGLIERVTIK 169
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 116 LIELVKVGGVIGYDNTLWGGSVVAP--PDADLDEHFLYLRDFVQELNKALAVDPRI 169
LIEL+K V+ D T W + P+A +++ +YL +Q L + L+ +PR+
Sbjct: 413 LIELMKDPSVVVRDTTAWTVGRICELLPEAAIND--VYLAPLLQCLIEGLSAEPRV 466
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 9 QFFSMLLKLINAKNTM---EIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ 65
M+ +L++ K M EIG GY TA + +DG +++++ E EK ++
Sbjct: 64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLR 123
Query: 66 KAG 68
K G
Sbjct: 124 KLG 126
>pdb|2XD2|A Chain A, The Crystal Structure Of Malx From Streptococcus
Pneumoniae
pdb|2XD2|B Chain B, The Crystal Structure Of Malx From Streptococcus
Pneumoniae
pdb|2XD3|A Chain A, The Crystal Structure Of Malx From Streptococcus
Pneumoniae In Complex With Maltopentaose
Length = 416
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 36 ATALAIPDDGKILALDITKEHYE---KGLPIIQKAGVAHKIDFREGPALPLLD 85
A + + +DG I+ ++ K YE KG+ + AG + F+EG ++D
Sbjct: 212 AKDIGLANDGSIVGINYAKSWYEKWPKGMQDTEGAGNLIQTQFQEGKTAAIID 264
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE 77
I A ++IG +G L+ ALA D I ALD +K E L I A + +I +
Sbjct: 42 ITAGTCIDIG--SGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADANLNDRIQIVQ 99
Query: 78 GPA--LPLLDQ 86
G +P+ D
Sbjct: 100 GDVHNIPIEDN 110
>pdb|2IO7|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
pdb|2IO7|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
pdb|2IO8|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
pdb|2IO8|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
pdb|2IO9|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
pdb|2IO9|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
pdb|2IOA|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
Phosphinate Inhibitor
pdb|2IOA|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
Phosphinate Inhibitor
pdb|2IOB|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE APO PROTEIN
pdb|2IOB|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE APO PROTEIN
Length = 619
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 51 DITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYV 110
D H E GL + + A +K + PA L+++L K+ FV + DKD
Sbjct: 334 DSASCHTEAGLILERWAEQGYKGNGF-NPAEGLINELAGAWKHSRARPFVHIMQDKDIEE 392
Query: 111 NYHKRLIE 118
NYH + +E
Sbjct: 393 NYHAQFME 400
>pdb|3O98|A Chain A, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
ADP AND Gsp
pdb|3O98|B Chain B, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
ADP AND Gsp
Length = 619
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 51 DITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYV 110
D H E GL + + A +K + PA L+++L K+ FV + DKD
Sbjct: 334 DSASCHTEAGLILERWAEQGYKGNGF-NPAEGLINELAGAWKHSRARPFVHIMQDKDIEE 392
Query: 111 NYHKRLIE 118
NYH + +E
Sbjct: 393 NYHAQFME 400
>pdb|2XYA|A Chain A, Non-Covalent Inhibtors Of Rhinovirus 3c Protease
Length = 182
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIP---DDGKILALDITKEHYEKG 60
S E +F L+K + T E G FTG + + +P D GK + +D
Sbjct: 2 SGPEEEFGMSLIKHNSCVITTENGKFTGLGVYDRFVVVPTHADPGKEIQVDGITTKVIDS 61
Query: 61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLI--- 117
+ K G+ +I + +L ++EK+ ++ ++D+Y N + L+
Sbjct: 62 YDLYNKNGIKLEI---------TVLKLDRNEKFRDIRR--YIPNNEDDYPNCNLALLANQ 110
Query: 118 ---ELVKVGGVIGYDNTLWGGSVVA 139
++ VG V+ Y N L G+ A
Sbjct: 111 PEPTIINVGDVVSYGNILLSGNQTA 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,930,644
Number of Sequences: 62578
Number of extensions: 261729
Number of successful extensions: 603
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 30
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)