Query 029836
Match_columns 187
No_of_seqs 167 out of 2679
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:25:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01596 Methyltransf_3: O-met 100.0 3.9E-40 8.4E-45 243.0 20.2 179 1-186 27-205 (205)
2 PLN02589 caffeoyl-CoA O-methyl 100.0 7.9E-39 1.7E-43 241.7 22.7 187 1-187 61-247 (247)
3 PLN02476 O-methyltransferase 100.0 3.2E-37 6.9E-42 235.6 22.7 179 1-186 100-278 (278)
4 COG4122 Predicted O-methyltran 100.0 1.2E-36 2.6E-41 224.3 20.9 174 5-187 45-219 (219)
5 PLN02781 Probable caffeoyl-CoA 100.0 6.1E-36 1.3E-40 226.0 22.6 184 1-186 50-233 (234)
6 KOG1663 O-methyltransferase [S 100.0 5.1E-35 1.1E-39 213.4 18.9 180 1-186 55-237 (237)
7 PF12847 Methyltransf_18: Meth 99.8 4.2E-19 9E-24 119.5 11.0 104 19-130 1-111 (112)
8 COG2242 CobL Precorrin-6B meth 99.8 1.4E-17 3E-22 119.3 17.0 120 3-132 18-137 (187)
9 PRK04457 spermidine synthase; 99.8 7.2E-17 1.6E-21 124.0 18.3 113 10-129 57-176 (262)
10 TIGR02469 CbiT precorrin-6Y C5 99.8 2.4E-17 5.1E-22 112.6 13.4 116 6-129 6-121 (124)
11 PRK00377 cbiT cobalt-precorrin 99.8 4.3E-17 9.3E-22 120.6 14.5 111 15-131 36-146 (198)
12 PRK08287 cobalt-precorrin-6Y C 99.7 3.6E-16 7.7E-21 114.6 17.6 115 6-131 18-132 (187)
13 TIGR00138 gidB 16S rRNA methyl 99.7 7.4E-17 1.6E-21 117.5 11.8 103 16-129 39-141 (181)
14 PRK13942 protein-L-isoaspartat 99.7 1E-16 2.2E-21 119.7 12.7 116 3-129 60-175 (212)
15 PRK13944 protein-L-isoaspartat 99.7 1.1E-16 2.4E-21 118.9 12.8 113 7-129 60-172 (205)
16 PF01209 Ubie_methyltran: ubiE 99.7 8.4E-17 1.8E-21 121.5 10.6 113 13-133 41-156 (233)
17 PF13847 Methyltransf_31: Meth 99.7 1.5E-16 3.2E-21 112.9 11.3 108 18-132 2-112 (152)
18 TIGR00080 pimt protein-L-isoas 99.7 2.1E-16 4.5E-21 118.4 12.6 115 4-129 62-176 (215)
19 PLN03075 nicotianamine synthas 99.7 1.9E-16 4.2E-21 122.2 12.6 119 4-130 109-233 (296)
20 PRK00107 gidB 16S rRNA methylt 99.7 4.5E-16 9.7E-21 113.7 13.5 100 19-129 45-144 (187)
21 COG2226 UbiE Methylase involve 99.7 3.4E-16 7.4E-21 117.5 13.1 107 19-134 51-160 (238)
22 PRK00811 spermidine synthase; 99.7 1.2E-15 2.6E-20 118.5 16.6 106 17-129 74-190 (283)
23 PRK07402 precorrin-6B methylas 99.7 8.2E-16 1.8E-20 113.6 14.5 119 4-131 25-143 (196)
24 PF05175 MTS: Methyltransferas 99.7 3E-16 6.4E-21 113.4 11.9 109 10-128 22-138 (170)
25 TIGR03533 L3_gln_methyl protei 99.7 4E-15 8.6E-20 115.7 17.1 117 4-129 102-250 (284)
26 PRK11036 putative S-adenosyl-L 99.7 8.4E-16 1.8E-20 117.9 13.1 103 18-129 43-148 (255)
27 COG2230 Cfa Cyclopropane fatty 99.7 1E-15 2.2E-20 117.0 13.2 120 3-134 53-180 (283)
28 TIGR02752 MenG_heptapren 2-hep 99.7 1.5E-15 3.2E-20 114.8 13.7 108 16-131 42-152 (231)
29 PRK01581 speE spermidine synth 99.7 5.4E-15 1.2E-19 116.7 16.6 107 16-129 147-267 (374)
30 COG2518 Pcm Protein-L-isoaspar 99.7 8.9E-16 1.9E-20 112.2 11.0 112 3-128 56-167 (209)
31 PRK00121 trmB tRNA (guanine-N( 99.7 1E-15 2.2E-20 113.6 11.2 117 5-129 28-155 (202)
32 PF01135 PCMT: Protein-L-isoas 99.7 6.8E-16 1.5E-20 114.5 10.2 115 3-128 56-170 (209)
33 PRK14901 16S rRNA methyltransf 99.7 5.8E-15 1.3E-19 121.2 16.3 160 5-185 238-430 (434)
34 PF13659 Methyltransf_26: Meth 99.7 1.4E-15 3.1E-20 103.0 10.2 102 20-128 1-113 (117)
35 COG4123 Predicted O-methyltran 99.7 1.8E-15 4E-20 113.7 11.5 115 8-128 33-168 (248)
36 PLN02366 spermidine synthase 99.6 1.6E-14 3.4E-19 113.1 16.8 107 17-129 89-205 (308)
37 PLN02233 ubiquinone biosynthes 99.6 3.3E-15 7.3E-20 114.9 12.8 111 16-133 70-185 (261)
38 COG2264 PrmA Ribosomal protein 99.6 1.2E-14 2.6E-19 112.0 15.7 147 9-187 154-300 (300)
39 PF13578 Methyltransf_24: Meth 99.6 2.5E-16 5.4E-21 105.1 5.5 102 24-131 1-106 (106)
40 PF02353 CMAS: Mycolic acid cy 99.6 1.7E-15 3.8E-20 116.8 10.5 118 6-135 46-171 (273)
41 TIGR00091 tRNA (guanine-N(7)-) 99.6 2E-14 4.4E-19 105.9 15.3 105 18-128 15-130 (194)
42 PRK14902 16S rRNA methyltransf 99.6 1.2E-14 2.5E-19 119.7 15.4 123 4-133 235-382 (444)
43 TIGR00417 speE spermidine synt 99.6 3.8E-14 8.2E-19 109.6 17.1 106 17-129 70-185 (270)
44 PRK14903 16S rRNA methyltransf 99.6 2.1E-14 4.6E-19 117.6 16.5 123 4-133 222-369 (431)
45 PRK11805 N5-glutamine S-adenos 99.6 8.5E-15 1.8E-19 114.9 13.2 117 4-129 114-262 (307)
46 PLN02244 tocopherol O-methyltr 99.6 9.4E-15 2E-19 116.4 13.5 107 18-133 117-226 (340)
47 PRK00312 pcm protein-L-isoaspa 99.6 8E-15 1.7E-19 109.5 12.2 113 3-129 62-174 (212)
48 COG2519 GCD14 tRNA(1-methylade 99.6 5.2E-15 1.1E-19 110.5 11.0 114 5-128 80-193 (256)
49 COG2227 UbiG 2-polyprenyl-3-me 99.6 5.3E-15 1.1E-19 109.7 10.2 113 9-133 46-164 (243)
50 PRK11207 tellurite resistance 99.6 1.1E-14 2.4E-19 107.6 11.9 101 16-128 27-132 (197)
51 PRK00517 prmA ribosomal protei 99.6 1.3E-13 2.8E-18 105.5 17.9 143 6-186 105-249 (250)
52 PRK15128 23S rRNA m(5)C1962 me 99.6 3.4E-14 7.3E-19 114.9 15.3 110 16-130 217-339 (396)
53 PRK14904 16S rRNA methyltransf 99.6 3E-14 6.4E-19 117.3 15.1 119 6-133 237-380 (445)
54 TIGR00477 tehB tellurite resis 99.6 1.6E-14 3.5E-19 106.5 12.2 105 13-130 24-133 (195)
55 PRK11873 arsM arsenite S-adeno 99.6 1.1E-14 2.5E-19 112.6 11.9 112 16-135 74-188 (272)
56 TIGR00446 nop2p NOL1/NOP2/sun 99.6 7.6E-14 1.6E-18 107.6 16.1 118 7-132 59-201 (264)
57 PF07279 DUF1442: Protein of u 99.6 8.8E-14 1.9E-18 101.5 15.1 156 3-184 25-185 (218)
58 PLN02396 hexaprenyldihydroxybe 99.6 2.6E-14 5.6E-19 112.5 13.2 104 19-132 131-237 (322)
59 PRK15451 tRNA cmo(5)U34 methyl 99.6 2E-14 4.3E-19 109.8 12.3 106 18-132 55-166 (247)
60 TIGR00536 hemK_fam HemK family 99.6 2.8E-14 6E-19 111.1 13.1 117 4-129 95-243 (284)
61 TIGR00740 methyltransferase, p 99.6 4.3E-14 9.3E-19 107.4 13.8 106 19-133 53-164 (239)
62 PF06325 PrmA: Ribosomal prote 99.6 5.6E-14 1.2E-18 109.1 14.5 147 5-186 146-294 (295)
63 smart00828 PKS_MT Methyltransf 99.6 1.1E-14 2.4E-19 109.6 10.3 103 21-132 1-106 (224)
64 PRK10901 16S rRNA methyltransf 99.6 9.2E-14 2E-18 113.9 16.5 122 4-133 229-375 (427)
65 COG4106 Tam Trans-aconitate me 99.6 7.4E-15 1.6E-19 106.9 8.7 97 17-128 28-127 (257)
66 PLN02823 spermine synthase 99.6 1.4E-13 3.1E-18 108.8 16.4 107 16-129 100-219 (336)
67 PRK01683 trans-aconitate 2-met 99.6 2E-14 4.4E-19 110.4 11.3 97 18-129 30-129 (258)
68 PRK10909 rsmD 16S rRNA m(2)G96 99.6 1.4E-13 2.9E-18 101.5 15.1 112 10-130 44-159 (199)
69 TIGR00563 rsmB ribosomal RNA s 99.6 1.3E-13 2.8E-18 113.0 16.5 123 5-133 224-371 (426)
70 PF13649 Methyltransf_25: Meth 99.6 1.2E-14 2.7E-19 96.0 8.5 93 23-124 1-101 (101)
71 COG1092 Predicted SAM-dependen 99.6 5.2E-14 1.1E-18 112.7 13.3 119 10-133 208-339 (393)
72 PRK14103 trans-aconitate 2-met 99.6 2.3E-14 5E-19 109.9 10.8 95 18-129 28-125 (255)
73 PRK15001 SAM-dependent 23S rib 99.6 3.1E-14 6.7E-19 114.1 11.6 101 20-129 229-339 (378)
74 PRK11783 rlmL 23S rRNA m(2)G24 99.6 6.9E-14 1.5E-18 120.8 14.4 110 14-131 533-657 (702)
75 TIGR03534 RF_mod_PrmC protein- 99.6 9.9E-14 2.2E-18 106.0 13.8 115 5-129 71-216 (251)
76 PF08241 Methyltransf_11: Meth 99.6 1.2E-14 2.5E-19 94.4 7.4 92 24-128 1-95 (95)
77 TIGR00406 prmA ribosomal prote 99.6 1.1E-13 2.3E-18 108.0 13.9 116 6-132 145-261 (288)
78 PF08704 GCD14: tRNA methyltra 99.6 6.2E-14 1.3E-18 106.1 11.9 116 5-128 26-144 (247)
79 PRK13943 protein-L-isoaspartat 99.6 1.2E-13 2.5E-18 108.8 13.7 114 5-129 66-179 (322)
80 COG0421 SpeE Spermidine syntha 99.6 3.1E-13 6.6E-18 104.3 15.6 106 17-129 74-189 (282)
81 PRK01544 bifunctional N5-gluta 99.6 8.6E-14 1.9E-18 116.0 13.1 101 20-129 139-268 (506)
82 PRK04266 fibrillarin; Provisio 99.5 8.5E-14 1.8E-18 104.7 11.7 105 15-129 68-175 (226)
83 TIGR00537 hemK_rel_arch HemK-r 99.5 2.2E-13 4.7E-18 99.2 12.7 108 9-130 9-140 (179)
84 TIGR00095 RNA methyltransferas 99.5 6.6E-13 1.4E-17 97.4 15.1 115 10-129 40-158 (189)
85 PRK12335 tellurite resistance 99.5 1.6E-13 3.4E-18 107.0 12.4 100 16-128 117-221 (287)
86 PRK08317 hypothetical protein; 99.5 3.2E-13 7E-18 102.1 13.5 120 8-136 8-130 (241)
87 TIGR03704 PrmC_rel_meth putati 99.5 3.9E-13 8.5E-18 102.8 13.8 115 5-129 68-215 (251)
88 PF03602 Cons_hypoth95: Conser 99.5 3.6E-13 7.8E-18 98.1 12.9 119 7-130 29-153 (183)
89 PTZ00098 phosphoethanolamine N 99.5 8.6E-14 1.9E-18 107.2 10.1 106 16-133 49-159 (263)
90 PF03848 TehB: Tellurite resis 99.5 2.8E-13 6E-18 98.8 12.0 114 4-131 16-134 (192)
91 COG2890 HemK Methylase of poly 99.5 2.8E-13 6E-18 105.0 12.5 115 4-129 93-237 (280)
92 PRK14966 unknown domain/N5-glu 99.5 2.7E-13 5.9E-18 109.1 12.6 116 4-128 235-379 (423)
93 PF10672 Methyltrans_SAM: S-ad 99.5 3.8E-13 8.3E-18 103.9 12.9 111 14-130 118-238 (286)
94 PRK15068 tRNA mo(5)U34 methylt 99.5 3.1E-13 6.7E-18 106.8 12.7 108 18-135 121-231 (322)
95 PF01564 Spermine_synth: Sperm 99.5 5.1E-13 1.1E-17 101.8 13.4 108 16-130 73-191 (246)
96 PRK14121 tRNA (guanine-N(7)-)- 99.5 4.8E-13 1E-17 107.0 13.8 103 19-128 122-233 (390)
97 TIGR02716 C20_methyl_CrtF C-20 99.5 3.3E-13 7.1E-18 106.2 12.5 109 16-135 146-259 (306)
98 PRK03522 rumB 23S rRNA methylu 99.5 1E-12 2.2E-17 103.8 15.1 101 18-128 172-272 (315)
99 PRK00216 ubiE ubiquinone/menaq 99.5 4.8E-13 1E-17 101.3 12.6 107 18-131 50-159 (239)
100 PRK14968 putative methyltransf 99.5 8.3E-13 1.8E-17 96.5 13.3 108 11-129 15-147 (188)
101 PRK09328 N5-glutamine S-adenos 99.5 4.4E-13 9.5E-18 103.8 12.4 114 5-128 91-236 (275)
102 PRK14967 putative methyltransf 99.5 8.6E-13 1.9E-17 99.3 13.5 99 18-128 35-157 (223)
103 PF08242 Methyltransf_12: Meth 99.5 7.2E-15 1.6E-19 96.7 1.9 96 24-126 1-99 (99)
104 TIGR03587 Pse_Me-ase pseudamin 99.5 3.7E-13 8E-18 99.9 10.8 104 16-136 40-148 (204)
105 PRK06922 hypothetical protein; 99.5 5.8E-13 1.3E-17 111.9 13.0 113 12-132 411-539 (677)
106 PLN02336 phosphoethanolamine N 99.5 4E-13 8.7E-18 111.7 11.9 113 9-133 257-372 (475)
107 PF05401 NodS: Nodulation prot 99.5 2E-13 4.3E-18 98.8 8.7 97 21-131 45-147 (201)
108 TIGR01177 conserved hypothetic 99.5 6.7E-13 1.5E-17 105.4 12.6 116 3-129 166-293 (329)
109 PF04989 CmcI: Cephalosporin h 99.5 3.7E-13 8E-18 98.5 10.1 161 4-170 17-184 (206)
110 PRK10258 biotin biosynthesis p 99.5 3.8E-13 8.3E-18 102.9 10.7 98 19-132 42-142 (251)
111 PRK09489 rsmC 16S ribosomal RN 99.5 5.6E-13 1.2E-17 106.0 11.5 109 7-128 185-301 (342)
112 PRK03612 spermidine synthase; 99.5 6E-13 1.3E-17 111.4 12.3 107 17-130 295-415 (521)
113 COG2813 RsmC 16S RNA G1207 met 99.5 7.4E-13 1.6E-17 101.7 11.3 110 7-128 147-264 (300)
114 TIGR02072 BioC biotin biosynth 99.5 8.7E-13 1.9E-17 99.8 11.5 103 18-133 33-138 (240)
115 TIGR00452 methyltransferase, p 99.5 1.3E-12 2.8E-17 102.6 12.2 109 17-135 119-230 (314)
116 TIGR02085 meth_trns_rumB 23S r 99.5 4E-12 8.7E-17 102.5 15.2 117 2-129 212-333 (374)
117 PRK05134 bifunctional 3-demeth 99.5 2.5E-12 5.5E-17 97.3 13.2 115 6-131 35-152 (233)
118 PRK00536 speE spermidine synth 99.4 2.5E-12 5.5E-17 98.2 13.0 99 15-128 68-169 (262)
119 TIGR00479 rumA 23S rRNA (uraci 99.4 4.2E-12 9.1E-17 104.4 15.2 103 18-128 291-394 (431)
120 PRK13168 rumA 23S rRNA m(5)U19 99.4 3.5E-12 7.7E-17 105.1 14.7 120 2-129 276-399 (443)
121 PTZ00146 fibrillarin; Provisio 99.4 7.7E-12 1.7E-16 96.5 15.0 103 17-128 130-235 (293)
122 PF02390 Methyltransf_4: Putat 99.4 1.5E-11 3.3E-16 90.6 15.7 101 22-128 20-131 (195)
123 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 3.3E-12 7.2E-17 95.7 12.1 106 17-132 37-145 (223)
124 PRK11705 cyclopropane fatty ac 99.4 3.1E-12 6.8E-17 103.3 12.5 101 17-133 165-270 (383)
125 TIGR03438 probable methyltrans 99.4 4.8E-12 1E-16 99.4 12.7 109 19-129 63-176 (301)
126 PRK11088 rrmA 23S rRNA methylt 99.4 2E-12 4.4E-17 100.1 10.4 94 19-129 85-180 (272)
127 PLN02490 MPBQ/MSBQ methyltrans 99.4 3E-12 6.5E-17 101.3 11.4 100 19-130 113-215 (340)
128 COG0742 N6-adenine-specific me 99.4 1.2E-11 2.6E-16 89.3 13.4 116 8-129 31-153 (187)
129 KOG4300 Predicted methyltransf 99.4 1.9E-12 4.1E-17 93.8 9.3 101 20-129 77-181 (252)
130 TIGR02021 BchM-ChlM magnesium 99.4 6.8E-12 1.5E-16 94.2 12.3 99 18-129 54-157 (219)
131 TIGR01983 UbiG ubiquinone bios 99.4 1.3E-11 2.9E-16 92.7 13.5 116 6-131 28-150 (224)
132 TIGR03840 TMPT_Se_Te thiopurin 99.4 4.3E-12 9.4E-17 94.7 10.5 101 19-131 34-153 (213)
133 PF13489 Methyltransf_23: Meth 99.4 6.1E-12 1.3E-16 89.5 10.9 106 7-133 9-118 (161)
134 KOG1270 Methyltransferases [Co 99.4 1E-12 2.2E-17 98.4 6.6 100 21-133 91-198 (282)
135 KOG2904 Predicted methyltransf 99.4 1E-11 2.2E-16 93.5 11.8 120 4-130 127-285 (328)
136 COG0220 Predicted S-adenosylme 99.4 2.1E-11 4.5E-16 91.4 13.1 102 21-128 50-162 (227)
137 PRK11188 rrmJ 23S rRNA methylt 99.4 8.6E-12 1.9E-16 92.9 10.7 99 18-129 50-164 (209)
138 PRK11933 yebU rRNA (cytosine-C 99.4 2.5E-11 5.5E-16 99.9 14.2 121 6-133 98-245 (470)
139 PRK07580 Mg-protoporphyrin IX 99.3 2.9E-11 6.3E-16 91.2 12.9 98 18-128 62-164 (230)
140 PRK13255 thiopurine S-methyltr 99.3 1.4E-11 3E-16 92.3 10.8 97 19-127 37-152 (218)
141 PLN02336 phosphoethanolamine N 99.3 1.9E-11 4.1E-16 101.7 12.7 106 17-134 35-146 (475)
142 PRK05031 tRNA (uracil-5-)-meth 99.3 5.7E-11 1.2E-15 95.4 14.5 120 2-128 186-318 (362)
143 KOG1271 Methyltransferases [Ge 99.3 3.9E-11 8.4E-16 85.4 11.8 107 20-134 68-185 (227)
144 PRK04338 N(2),N(2)-dimethylgua 99.3 6.7E-11 1.4E-15 95.4 14.5 99 21-129 59-157 (382)
145 KOG1540 Ubiquinone biosynthesi 99.3 3.2E-11 7E-16 90.1 11.4 105 19-130 100-214 (296)
146 PLN02672 methionine S-methyltr 99.3 4.8E-11 1E-15 105.9 13.9 95 4-105 99-212 (1082)
147 smart00650 rADc Ribosomal RNA 99.3 4.5E-11 9.7E-16 86.2 11.5 112 17-141 11-124 (169)
148 cd02440 AdoMet_MTases S-adenos 99.3 6.4E-11 1.4E-15 77.2 10.9 99 22-129 1-103 (107)
149 PHA03412 putative methyltransf 99.3 1.3E-10 2.8E-15 87.0 13.5 102 18-133 48-166 (241)
150 TIGR00438 rrmJ cell division p 99.3 3.1E-11 6.6E-16 88.6 10.1 107 10-129 23-145 (188)
151 PF02475 Met_10: Met-10+ like- 99.3 4.3E-11 9.3E-16 88.1 10.7 101 17-127 99-199 (200)
152 TIGR02143 trmA_only tRNA (urac 99.3 2E-10 4.3E-15 92.0 15.0 120 2-128 177-309 (353)
153 TIGR00308 TRM1 tRNA(guanine-26 99.3 1.5E-10 3.3E-15 92.9 13.8 102 21-130 46-147 (374)
154 smart00138 MeTrc Methyltransfe 99.3 2.6E-11 5.7E-16 93.4 8.9 105 19-130 99-242 (264)
155 COG2265 TrmA SAM-dependent met 99.3 1.8E-10 3.9E-15 94.0 13.6 118 2-128 272-394 (432)
156 PRK06202 hypothetical protein; 99.2 4.1E-11 8.9E-16 90.7 8.8 103 18-133 59-169 (232)
157 COG2521 Predicted archaeal met 99.2 3.6E-11 7.9E-16 88.7 8.0 105 17-128 132-243 (287)
158 PRK05785 hypothetical protein; 99.2 1.2E-10 2.6E-15 87.8 10.9 97 10-124 41-141 (226)
159 PHA03411 putative methyltransf 99.2 4.5E-10 9.8E-15 85.9 13.5 96 19-129 64-182 (279)
160 PF08003 Methyltransf_9: Prote 99.2 2.1E-10 4.6E-15 88.3 11.7 110 17-136 113-225 (315)
161 KOG2899 Predicted methyltransf 99.2 6.2E-11 1.3E-15 88.0 8.2 110 17-133 56-212 (288)
162 PF05891 Methyltransf_PK: AdoM 99.2 7.6E-11 1.6E-15 86.8 7.5 127 7-143 38-176 (218)
163 PF02527 GidB: rRNA small subu 99.2 4.1E-10 8.9E-15 82.0 10.7 96 22-128 51-146 (184)
164 PLN02585 magnesium protoporphy 99.2 6.4E-10 1.4E-14 87.5 12.6 96 19-128 144-248 (315)
165 PF01170 UPF0020: Putative RNA 99.2 5.4E-10 1.2E-14 81.3 11.3 121 2-129 11-150 (179)
166 PF09445 Methyltransf_15: RNA 99.2 1.1E-10 2.4E-15 82.9 7.3 78 21-105 1-78 (163)
167 KOG3191 Predicted N6-DNA-methy 99.1 9.8E-10 2.1E-14 78.3 11.0 104 19-132 43-170 (209)
168 PF10294 Methyltransf_16: Puta 99.1 8.3E-10 1.8E-14 79.9 11.0 107 17-129 43-155 (173)
169 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.1 4E-09 8.6E-14 82.1 15.3 149 5-176 71-248 (283)
170 PTZ00338 dimethyladenosine tra 99.1 2.8E-09 6.2E-14 83.2 14.4 90 5-106 22-111 (294)
171 COG0144 Sun tRNA and rRNA cyto 99.1 2.6E-09 5.5E-14 85.6 14.1 126 3-133 140-291 (355)
172 PRK11727 23S rRNA mA1618 methy 99.1 9.9E-10 2.2E-14 86.4 11.4 83 19-105 114-198 (321)
173 COG2263 Predicted RNA methylas 99.1 3.2E-09 6.9E-14 76.3 12.9 100 5-118 28-135 (198)
174 PF07021 MetW: Methionine bios 99.1 7.1E-10 1.5E-14 80.3 9.5 133 18-166 12-158 (193)
175 PF05724 TPMT: Thiopurine S-me 99.1 2.1E-09 4.6E-14 80.5 12.2 116 3-128 22-153 (218)
176 COG3963 Phospholipid N-methylt 99.1 2E-09 4.3E-14 75.7 11.0 117 4-128 33-154 (194)
177 PRK13256 thiopurine S-methyltr 99.1 1.6E-09 3.4E-14 81.2 9.8 109 19-134 43-167 (226)
178 COG0357 GidB Predicted S-adeno 99.1 1.2E-09 2.6E-14 81.0 8.8 97 20-127 68-165 (215)
179 COG1041 Predicted DNA modifica 99.1 1.9E-09 4.1E-14 84.6 10.2 117 2-129 180-309 (347)
180 KOG1661 Protein-L-isoaspartate 99.0 2.2E-09 4.8E-14 78.2 9.6 112 7-128 69-191 (237)
181 COG2520 Predicted methyltransf 99.0 3.3E-09 7.2E-14 83.7 11.4 107 17-133 186-292 (341)
182 KOG2915 tRNA(1-methyladenosine 99.0 2.7E-09 5.8E-14 80.6 10.1 112 9-127 95-207 (314)
183 COG4976 Predicted methyltransf 99.0 3.3E-10 7.1E-15 83.6 5.1 159 9-187 112-287 (287)
184 PF00891 Methyltransf_2: O-met 99.0 8.9E-10 1.9E-14 83.9 7.5 99 17-134 98-203 (241)
185 PF12147 Methyltransf_20: Puta 99.0 9.7E-09 2.1E-13 78.6 12.7 115 14-134 130-253 (311)
186 TIGR02081 metW methionine bios 99.0 1.7E-09 3.7E-14 79.7 8.2 89 19-122 13-104 (194)
187 PRK01544 bifunctional N5-gluta 99.0 1.5E-08 3.2E-13 84.8 14.6 103 19-128 347-460 (506)
188 PF05958 tRNA_U5-meth_tr: tRNA 99.0 5.8E-09 1.2E-13 83.6 11.6 111 2-116 176-299 (352)
189 PF05185 PRMT5: PRMT5 arginine 99.0 4.4E-09 9.6E-14 86.4 10.9 100 20-127 187-294 (448)
190 PRK14896 ksgA 16S ribosomal RN 99.0 8.9E-09 1.9E-13 79.2 11.9 88 3-105 13-100 (258)
191 KOG2361 Predicted methyltransf 99.0 5.5E-10 1.2E-14 82.9 4.8 108 20-133 72-186 (264)
192 KOG1499 Protein arginine N-met 99.0 2.4E-09 5.3E-14 83.6 8.3 102 17-129 58-166 (346)
193 KOG3010 Methyltransferase [Gen 99.0 1.2E-09 2.5E-14 81.2 5.4 111 8-128 21-135 (261)
194 KOG2730 Methylase [General fun 99.0 3.4E-09 7.4E-14 77.7 7.6 84 16-105 91-174 (263)
195 PRK00274 ksgA 16S ribosomal RN 98.9 1.5E-08 3.3E-13 78.5 11.6 100 4-117 27-126 (272)
196 COG4262 Predicted spermidine s 98.9 2.9E-08 6.3E-13 78.0 11.7 105 18-129 288-406 (508)
197 KOG1541 Predicted protein carb 98.9 3.7E-09 8.1E-14 77.6 6.4 100 14-128 43-158 (270)
198 PRK00050 16S rRNA m(4)C1402 me 98.9 1.5E-08 3.3E-13 78.9 9.5 82 18-105 18-99 (296)
199 TIGR00755 ksgA dimethyladenosi 98.9 4.3E-08 9.3E-13 75.2 11.5 99 4-117 14-115 (253)
200 PRK04148 hypothetical protein; 98.9 5.8E-08 1.3E-12 66.7 10.5 103 7-128 4-107 (134)
201 PF06080 DUF938: Protein of un 98.9 1.7E-08 3.8E-13 74.0 8.4 124 7-132 11-143 (204)
202 PF03291 Pox_MCEL: mRNA cappin 98.8 3.5E-08 7.7E-13 78.2 9.5 107 19-129 62-185 (331)
203 KOG2187 tRNA uracil-5-methyltr 98.8 3.9E-08 8.5E-13 80.3 9.8 121 1-127 361-487 (534)
204 PF03059 NAS: Nicotianamine sy 98.8 4.9E-08 1.1E-12 75.1 9.5 103 20-129 121-229 (276)
205 KOG1562 Spermidine synthase [A 98.8 7.8E-08 1.7E-12 73.6 10.4 143 14-176 116-269 (337)
206 KOG3420 Predicted RNA methylas 98.8 4.8E-08 1E-12 67.3 8.0 77 18-105 47-123 (185)
207 COG0030 KsgA Dimethyladenosine 98.8 4.8E-07 1E-11 69.0 13.7 86 17-115 28-114 (259)
208 PF04816 DUF633: Family of unk 98.8 7E-08 1.5E-12 71.5 8.9 98 23-128 1-99 (205)
209 PF05711 TylF: Macrocin-O-meth 98.7 7.1E-08 1.5E-12 73.2 8.6 126 3-133 54-215 (248)
210 PRK10742 putative methyltransf 98.7 1.4E-07 3E-12 71.3 10.0 88 9-105 76-173 (250)
211 PLN02232 ubiquinone biosynthes 98.7 4.4E-08 9.6E-13 70.0 6.8 78 48-132 1-83 (160)
212 KOG1500 Protein arginine N-met 98.7 1E-07 2.2E-12 74.3 8.3 99 18-127 176-279 (517)
213 PF08123 DOT1: Histone methyla 98.7 2.2E-07 4.7E-12 68.9 9.4 109 14-129 37-157 (205)
214 KOG0820 Ribosomal RNA adenine 98.7 2.3E-07 5.1E-12 70.3 9.5 83 11-105 50-132 (315)
215 COG3510 CmcI Cephalosporin hyd 98.7 8.9E-07 1.9E-11 63.9 11.7 147 4-162 54-209 (237)
216 PF05219 DREV: DREV methyltran 98.7 4.5E-07 9.7E-12 68.6 10.6 134 19-173 94-237 (265)
217 TIGR00478 tly hemolysin TlyA f 98.6 1.4E-07 2.9E-12 71.1 7.0 94 18-128 74-169 (228)
218 KOG1709 Guanidinoacetate methy 98.6 1.1E-06 2.3E-11 64.6 10.4 106 18-132 100-208 (271)
219 PRK11783 rlmL 23S rRNA m(2)G24 98.6 7.7E-07 1.7E-11 77.5 11.3 96 5-105 175-312 (702)
220 COG2384 Predicted SAM-dependen 98.6 1.3E-06 2.7E-11 64.5 10.4 104 11-122 7-112 (226)
221 KOG1122 tRNA and rRNA cytosine 98.5 5.2E-07 1.1E-11 72.2 8.9 111 16-132 238-373 (460)
222 PF01728 FtsJ: FtsJ-like methy 98.5 3.9E-07 8.5E-12 66.3 7.2 99 19-129 23-138 (181)
223 PF02005 TRM: N2,N2-dimethylgu 98.5 6.4E-07 1.4E-11 72.3 9.0 106 19-131 49-155 (377)
224 COG0293 FtsJ 23S rRNA methylas 98.5 4.9E-06 1.1E-10 61.2 12.5 101 19-132 45-161 (205)
225 PF01269 Fibrillarin: Fibrilla 98.5 2.3E-06 5.1E-11 63.4 10.8 104 18-128 72-176 (229)
226 PF02384 N6_Mtase: N-6 DNA Met 98.5 9.6E-07 2.1E-11 69.7 9.1 121 3-128 30-181 (311)
227 PF06962 rRNA_methylase: Putat 98.5 2E-06 4.3E-11 59.5 9.3 84 46-136 1-96 (140)
228 KOG1975 mRNA cap methyltransfe 98.5 1.3E-06 2.9E-11 67.8 8.9 107 18-128 116-235 (389)
229 PF05148 Methyltransf_8: Hypot 98.4 1.1E-06 2.4E-11 64.5 7.7 120 7-173 60-182 (219)
230 COG4076 Predicted RNA methylas 98.4 7.9E-07 1.7E-11 64.0 6.5 99 19-130 32-135 (252)
231 PF13679 Methyltransf_32: Meth 98.4 3E-06 6.6E-11 59.2 9.5 74 8-81 10-92 (141)
232 COG0116 Predicted N6-adenine-s 98.4 3.7E-06 8E-11 67.2 10.6 117 6-129 178-343 (381)
233 TIGR02987 met_A_Alw26 type II 98.4 3.1E-06 6.7E-11 71.5 10.3 100 3-105 8-121 (524)
234 TIGR01444 fkbM_fam methyltrans 98.4 1.7E-06 3.8E-11 60.3 7.2 57 22-80 1-57 (143)
235 KOG3115 Methyltransferase-like 98.4 3.2E-06 7E-11 61.6 8.6 104 20-128 61-181 (249)
236 TIGR03439 methyl_EasF probable 98.4 1.2E-05 2.6E-10 63.6 12.1 108 19-128 76-195 (319)
237 COG1352 CheR Methylase of chem 98.3 2.6E-06 5.7E-11 65.5 7.6 103 19-128 96-239 (268)
238 TIGR00006 S-adenosyl-methyltra 98.3 9.1E-06 2E-10 63.6 10.4 82 18-104 19-100 (305)
239 PRK10611 chemotaxis methyltran 98.3 1.2E-06 2.5E-11 68.2 5.2 104 19-129 115-261 (287)
240 PF00398 RrnaAD: Ribosomal RNA 98.3 2.4E-06 5.1E-11 65.9 6.8 115 5-129 16-133 (262)
241 PF01739 CheR: CheR methyltran 98.2 1.6E-06 3.6E-11 63.8 4.6 104 19-129 31-174 (196)
242 COG1867 TRM1 N2,N2-dimethylgua 98.2 2.5E-05 5.4E-10 61.9 11.1 104 20-132 53-156 (380)
243 PF09243 Rsm22: Mitochondrial 98.2 1.4E-05 3E-10 62.0 9.7 111 8-128 19-137 (274)
244 PF05971 Methyltransf_10: Prot 98.2 6.2E-06 1.3E-10 64.2 7.5 93 9-105 87-186 (299)
245 PF01861 DUF43: Protein of unk 98.2 8.2E-05 1.8E-09 56.0 12.8 97 19-124 44-142 (243)
246 KOG3178 Hydroxyindole-O-methyl 98.1 1.5E-05 3.2E-10 62.8 8.1 97 20-134 178-279 (342)
247 COG1889 NOP1 Fibrillarin-like 98.1 7.5E-05 1.6E-09 54.6 10.0 103 18-128 75-178 (231)
248 PRK11760 putative 23S rRNA C24 98.0 4.3E-05 9.3E-10 60.4 9.2 87 18-123 210-296 (357)
249 COG0275 Predicted S-adenosylme 98.0 7.8E-05 1.7E-09 57.8 10.1 82 19-104 23-104 (314)
250 KOG3045 Predicted RNA methylas 98.0 2.3E-05 5E-10 59.3 7.1 98 7-133 168-267 (325)
251 PF01795 Methyltransf_5: MraW 97.9 6.5E-05 1.4E-09 58.9 8.0 84 17-105 18-102 (310)
252 COG1189 Predicted rRNA methyla 97.9 3.6E-05 7.8E-10 57.6 5.9 99 17-128 77-176 (245)
253 KOG1253 tRNA methyltransferase 97.9 2E-05 4.3E-10 64.5 4.4 114 14-131 104-217 (525)
254 PHA01634 hypothetical protein 97.8 7.9E-05 1.7E-09 50.4 6.4 75 18-105 27-101 (156)
255 PF04445 SAM_MT: Putative SAM- 97.8 4.2E-05 9.2E-10 57.5 5.6 86 11-105 65-160 (234)
256 COG3897 Predicted methyltransf 97.8 5.8E-05 1.3E-09 54.9 6.0 96 17-127 77-175 (218)
257 PF04672 Methyltransf_19: S-ad 97.8 0.00033 7.2E-09 53.7 9.6 120 12-132 61-192 (267)
258 PF03141 Methyltransf_29: Puta 97.7 0.00011 2.3E-09 60.7 6.6 97 21-131 119-220 (506)
259 PRK01747 mnmC bifunctional tRN 97.7 0.00045 9.7E-09 60.2 10.9 102 20-127 58-203 (662)
260 KOG2352 Predicted spermine/spe 97.7 0.0001 2.2E-09 60.5 6.3 112 20-133 296-419 (482)
261 COG0500 SmtA SAM-dependent met 97.7 0.00078 1.7E-08 46.4 10.1 104 23-134 52-159 (257)
262 PF07091 FmrO: Ribosomal RNA m 97.7 0.00021 4.6E-09 54.1 7.2 84 9-103 94-178 (251)
263 KOG1596 Fibrillarin and relate 97.6 0.0012 2.7E-08 49.7 10.8 117 5-128 136-259 (317)
264 KOG3201 Uncharacterized conser 97.6 0.00026 5.7E-09 50.0 6.5 105 18-128 28-138 (201)
265 KOG2940 Predicted methyltransf 97.6 6.8E-05 1.5E-09 55.9 3.4 97 20-128 73-172 (325)
266 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.5 0.00012 2.6E-09 56.1 4.1 114 19-135 56-204 (256)
267 PF07942 N2227: N2227-like pro 97.5 0.0016 3.4E-08 50.3 9.6 111 9-127 39-199 (270)
268 KOG4589 Cell division protein 97.5 0.0018 4E-08 46.9 9.2 103 18-135 68-187 (232)
269 KOG2198 tRNA cytosine-5-methyl 97.3 0.0014 3.1E-08 52.2 7.9 116 16-133 152-299 (375)
270 COG4798 Predicted methyltransf 97.3 0.0006 1.3E-08 49.7 5.1 105 17-130 46-166 (238)
271 KOG1269 SAM-dependent methyltr 97.3 0.00047 1E-08 55.5 5.1 106 18-132 109-217 (364)
272 COG5459 Predicted rRNA methyla 97.2 0.00028 6.1E-09 55.8 3.4 108 17-129 111-224 (484)
273 COG1064 AdhP Zn-dependent alco 97.2 0.0043 9.2E-08 49.4 10.0 97 17-132 164-261 (339)
274 COG4301 Uncharacterized conser 97.2 0.011 2.4E-07 44.8 11.6 111 14-128 73-191 (321)
275 KOG2671 Putative RNA methylase 97.2 0.00099 2.1E-08 52.6 5.8 92 4-105 193-293 (421)
276 KOG1227 Putative methyltransfe 97.2 0.00029 6.2E-09 54.5 2.5 100 20-132 195-299 (351)
277 KOG0024 Sorbitol dehydrogenase 97.1 0.011 2.5E-07 46.5 10.6 121 3-131 144-274 (354)
278 COG0286 HsdM Type I restrictio 97.1 0.0052 1.1E-07 51.7 9.4 131 3-135 170-334 (489)
279 COG1063 Tdh Threonine dehydrog 97.1 0.0089 1.9E-07 48.1 10.3 104 19-134 168-273 (350)
280 KOG4058 Uncharacterized conser 97.0 0.0034 7.3E-08 43.8 6.7 104 14-128 67-170 (199)
281 KOG1501 Arginine N-methyltrans 97.0 0.0019 4.1E-08 52.6 5.9 59 22-82 69-127 (636)
282 PF04378 RsmJ: Ribosomal RNA s 96.9 0.0081 1.7E-07 45.8 8.1 111 7-127 46-161 (245)
283 PF03141 Methyltransf_29: Puta 96.8 0.0049 1.1E-07 51.1 6.9 97 19-130 365-467 (506)
284 PF00107 ADH_zinc_N: Zinc-bind 96.8 0.01 2.2E-07 40.3 7.3 92 29-133 1-92 (130)
285 PF11599 AviRa: RRNA methyltra 96.7 0.028 6E-07 41.8 9.2 108 19-130 51-214 (246)
286 PRK13699 putative methylase; P 96.6 0.0033 7.2E-08 47.5 4.6 51 73-128 2-70 (227)
287 PF02254 TrkA_N: TrkA-N domain 96.6 0.012 2.7E-07 39.2 6.9 88 28-128 4-94 (116)
288 PF11968 DUF3321: Putative met 96.5 0.0041 8.8E-08 46.2 4.2 80 21-125 53-139 (219)
289 PRK11524 putative methyltransf 96.5 0.0067 1.5E-07 47.4 5.7 54 71-129 7-79 (284)
290 COG3129 Predicted SAM-dependen 96.5 0.0041 9E-08 46.6 4.1 80 21-105 80-162 (292)
291 PF12692 Methyltransf_17: S-ad 96.4 0.038 8.1E-07 38.6 8.2 114 7-132 14-136 (160)
292 PRK09424 pntA NAD(P) transhydr 96.4 0.078 1.7E-06 44.8 11.8 109 18-135 163-290 (509)
293 KOG3987 Uncharacterized conser 96.4 0.0011 2.4E-08 48.8 0.5 96 19-134 112-211 (288)
294 PF05430 Methyltransf_30: S-ad 96.3 0.01 2.2E-07 40.5 4.9 50 72-127 32-87 (124)
295 cd08283 FDH_like_1 Glutathione 96.3 0.091 2E-06 42.8 11.1 106 16-130 181-306 (386)
296 COG2961 ComJ Protein involved 96.2 0.12 2.6E-06 39.3 10.5 111 7-127 77-192 (279)
297 COG1568 Predicted methyltransf 96.2 0.027 5.8E-07 43.5 7.0 102 19-128 152-258 (354)
298 KOG0822 Protein kinase inhibit 96.1 0.035 7.5E-07 46.6 7.6 112 8-127 350-475 (649)
299 PRK09880 L-idonate 5-dehydroge 96.0 0.084 1.8E-06 42.1 9.8 98 19-131 169-267 (343)
300 TIGR00027 mthyl_TIGR00027 meth 96.0 0.28 6.1E-06 37.9 12.2 111 19-132 81-199 (260)
301 KOG2793 Putative N2,N2-dimethy 96.0 0.11 2.3E-06 39.7 9.5 100 19-128 86-197 (248)
302 PF10237 N6-adenineMlase: Prob 96.0 0.3 6.5E-06 34.9 11.2 109 4-128 8-121 (162)
303 KOG2651 rRNA adenine N-6-methy 95.8 0.056 1.2E-06 43.6 7.6 54 7-62 141-194 (476)
304 KOG1099 SAM-dependent methyltr 95.8 0.029 6.2E-07 42.2 5.6 96 20-128 42-161 (294)
305 cd00315 Cyt_C5_DNA_methylase C 95.8 0.027 5.9E-07 43.8 5.8 70 22-105 2-71 (275)
306 COG1565 Uncharacterized conser 95.7 0.056 1.2E-06 43.3 7.1 49 20-68 78-133 (370)
307 cd08254 hydroxyacyl_CoA_DH 6-h 95.6 0.2 4.3E-06 39.5 10.4 99 17-129 163-262 (338)
308 PF03686 UPF0146: Uncharacteri 95.6 0.095 2.1E-06 35.7 7.2 98 9-128 3-100 (127)
309 cd08281 liver_ADH_like1 Zinc-d 95.6 0.16 3.5E-06 41.0 10.0 101 18-131 190-291 (371)
310 PF02636 Methyltransf_28: Puta 95.4 0.026 5.6E-07 43.3 4.4 47 20-66 19-72 (252)
311 cd08237 ribitol-5-phosphate_DH 95.4 0.23 5E-06 39.7 10.0 94 18-130 162-256 (341)
312 PRK11524 putative methyltransf 95.4 0.075 1.6E-06 41.5 7.0 56 8-66 195-252 (284)
313 PLN03154 putative allyl alcoho 95.4 0.38 8.3E-06 38.6 11.2 101 17-131 156-259 (348)
314 KOG1098 Putative SAM-dependent 95.3 0.059 1.3E-06 46.0 6.5 95 17-127 42-155 (780)
315 PF05050 Methyltransf_21: Meth 95.3 0.057 1.2E-06 38.0 5.7 43 25-67 1-48 (167)
316 KOG2078 tRNA modification enzy 95.2 0.015 3.2E-07 47.4 2.5 65 18-85 248-313 (495)
317 KOG1331 Predicted methyltransf 95.1 0.014 3E-07 45.1 1.9 90 19-128 45-141 (293)
318 PRK08114 cystathionine beta-ly 95.1 1.1 2.4E-05 36.8 13.1 126 4-136 61-192 (395)
319 COG0686 Ald Alanine dehydrogen 95.0 0.31 6.7E-06 38.5 9.1 102 20-135 168-273 (371)
320 TIGR00561 pntA NAD(P) transhyd 95.0 0.33 7.2E-06 41.1 9.9 109 18-135 162-289 (511)
321 PF01053 Cys_Met_Meta_PP: Cys/ 94.9 1.2 2.6E-05 36.5 12.9 122 4-132 54-180 (386)
322 cd08294 leukotriene_B4_DH_like 94.9 0.65 1.4E-05 36.5 11.3 98 17-129 141-240 (329)
323 TIGR03451 mycoS_dep_FDH mycoth 94.9 0.54 1.2E-05 37.7 10.8 103 17-131 174-277 (358)
324 TIGR03201 dearomat_had 6-hydro 94.8 0.41 8.9E-06 38.3 9.8 106 18-132 165-274 (349)
325 TIGR02825 B4_12hDH leukotriene 94.8 0.87 1.9E-05 35.9 11.6 98 17-129 136-236 (325)
326 TIGR00518 alaDH alanine dehydr 94.7 0.63 1.4E-05 37.9 10.8 104 19-136 166-273 (370)
327 COG0604 Qor NADPH:quinone redu 94.7 0.7 1.5E-05 36.9 10.8 100 17-130 140-241 (326)
328 cd08293 PTGR2 Prostaglandin re 94.7 0.67 1.5E-05 36.8 10.8 94 21-128 156-252 (345)
329 PLN02740 Alcohol dehydrogenase 94.7 0.7 1.5E-05 37.5 11.0 103 16-131 195-301 (381)
330 PRK13699 putative methylase; P 94.7 0.17 3.8E-06 38.2 7.0 56 9-67 151-208 (227)
331 PRK10309 galactitol-1-phosphat 94.7 0.57 1.2E-05 37.3 10.4 103 18-132 159-262 (347)
332 cd05188 MDR Medium chain reduc 94.5 0.83 1.8E-05 34.4 10.5 99 18-130 133-232 (271)
333 PF01210 NAD_Gly3P_dh_N: NAD-d 94.5 0.2 4.4E-06 35.4 6.6 95 22-128 1-101 (157)
334 KOG2912 Predicted DNA methylas 94.5 0.15 3.3E-06 40.2 6.3 95 8-105 86-187 (419)
335 COG1255 Uncharacterized protei 94.4 0.91 2E-05 30.4 8.9 96 10-126 4-100 (129)
336 COG0677 WecC UDP-N-acetyl-D-ma 94.4 0.57 1.2E-05 38.2 9.4 105 21-135 10-133 (436)
337 cd08295 double_bond_reductase_ 94.4 1.2 2.5E-05 35.4 11.5 100 16-129 148-250 (338)
338 PRK09028 cystathionine beta-ly 94.3 2.5 5.4E-05 34.8 13.7 124 5-135 61-188 (394)
339 PLN02827 Alcohol dehydrogenase 94.3 0.72 1.6E-05 37.5 10.2 102 17-131 191-296 (378)
340 KOG2352 Predicted spermine/spe 94.3 0.25 5.5E-06 41.1 7.5 95 22-128 51-159 (482)
341 PF03807 F420_oxidored: NADP o 94.0 0.35 7.6E-06 30.9 6.5 85 23-127 2-91 (96)
342 TIGR02356 adenyl_thiF thiazole 93.8 1.4 3.1E-05 32.6 10.2 81 18-105 19-120 (202)
343 TIGR01324 cysta_beta_ly_B cyst 93.8 3.1 6.8E-05 33.9 13.9 126 4-136 49-178 (377)
344 cd08239 THR_DH_like L-threonin 93.7 0.99 2.1E-05 35.8 10.0 100 17-130 161-262 (339)
345 TIGR03366 HpnZ_proposed putati 93.7 1.9 4E-05 33.4 11.3 100 19-132 120-220 (280)
346 cd00401 AdoHcyase S-adenosyl-L 93.7 1.4 3E-05 36.5 10.8 88 18-130 200-289 (413)
347 PF00145 DNA_methylase: C-5 cy 93.6 0.78 1.7E-05 36.1 9.2 69 22-105 2-70 (335)
348 PRK05967 cystathionine beta-ly 93.6 3.5 7.5E-05 33.9 13.2 122 4-132 63-188 (395)
349 PRK05939 hypothetical protein; 93.6 3.4 7.3E-05 34.0 13.0 122 4-132 46-170 (397)
350 TIGR02818 adh_III_F_hyde S-(hy 93.5 1.5 3.3E-05 35.4 10.8 102 17-131 183-288 (368)
351 COG3315 O-Methyltransferase in 93.5 1.2 2.6E-05 35.2 9.8 108 20-130 93-209 (297)
352 cd08230 glucose_DH Glucose deh 93.4 1.6 3.5E-05 34.9 10.7 96 18-131 171-270 (355)
353 PRK07810 O-succinylhomoserine 93.4 2.2 4.8E-05 35.1 11.6 123 4-133 69-195 (403)
354 COG1748 LYS9 Saccharopine dehy 93.4 0.49 1.1E-05 38.7 7.6 83 21-116 2-88 (389)
355 COG0270 Dcm Site-specific DNA 93.2 1.2 2.5E-05 35.7 9.5 98 20-131 3-117 (328)
356 cd08285 NADP_ADH NADP(H)-depen 93.2 1.9 4.2E-05 34.3 10.9 103 17-131 164-267 (351)
357 PRK06234 methionine gamma-lyas 93.2 3.3 7.2E-05 34.0 12.3 123 4-134 63-192 (400)
358 COG4017 Uncharacterized protei 93.2 0.84 1.8E-05 33.6 7.7 93 11-130 36-129 (254)
359 PRK06940 short chain dehydroge 93.1 1.8 3.8E-05 33.4 10.3 81 21-105 3-85 (275)
360 PRK08045 cystathionine gamma-s 93.0 4.1 8.8E-05 33.4 12.6 123 4-134 51-178 (386)
361 KOG2798 Putative trehalase [Ca 93.0 0.71 1.5E-05 36.5 7.6 34 95-128 258-294 (369)
362 cd08300 alcohol_DH_class_III c 93.0 2.4 5.1E-05 34.2 11.2 102 17-131 184-289 (368)
363 PRK12475 thiamine/molybdopteri 93.0 2.1 4.6E-05 34.4 10.7 80 19-105 23-125 (338)
364 PRK08064 cystathionine beta-ly 93.0 3.2 6.9E-05 34.0 11.9 122 4-133 53-178 (390)
365 PF06859 Bin3: Bicoid-interact 93.0 0.095 2.1E-06 34.7 2.5 39 96-134 1-48 (110)
366 TIGR01202 bchC 2-desacetyl-2-h 92.9 0.79 1.7E-05 36.0 8.1 88 19-131 144-232 (308)
367 KOG3924 Putative protein methy 92.9 1.1 2.4E-05 36.5 8.7 113 13-132 186-310 (419)
368 KOG0821 Predicted ribosomal RN 92.8 0.25 5.5E-06 37.1 4.8 61 19-83 50-110 (326)
369 PLN02586 probable cinnamyl alc 92.8 3.3 7.2E-05 33.3 11.7 95 19-130 183-278 (360)
370 PF07757 AdoMet_MTase: Predict 92.7 0.11 2.4E-06 34.3 2.5 34 19-55 58-91 (112)
371 PF10354 DUF2431: Domain of un 92.7 0.79 1.7E-05 32.9 7.1 100 26-129 3-124 (166)
372 PRK08574 cystathionine gamma-s 92.7 2.2 4.8E-05 34.9 10.6 122 4-133 52-177 (385)
373 PF05206 TRM13: Methyltransfer 92.7 0.58 1.3E-05 36.1 6.8 75 7-82 3-84 (259)
374 PF12242 Eno-Rase_NADH_b: NAD( 92.6 0.41 8.9E-06 29.5 4.7 37 17-53 36-73 (78)
375 KOG2360 Proliferation-associat 92.6 0.19 4.2E-06 40.6 4.2 88 12-105 206-293 (413)
376 COG0541 Ffh Signal recognition 92.6 2 4.3E-05 35.6 9.9 124 20-164 100-240 (451)
377 PRK05225 ketol-acid reductoiso 92.6 1.1 2.4E-05 37.5 8.5 93 16-130 32-131 (487)
378 cd08238 sorbose_phosphate_red 92.5 1.3 2.7E-05 36.5 9.0 101 18-127 174-285 (410)
379 PLN02494 adenosylhomocysteinas 92.4 2.4 5.3E-05 35.6 10.5 95 10-128 240-339 (477)
380 cd00757 ThiF_MoeB_HesA_family 92.4 2.8 6E-05 31.6 10.1 81 18-105 19-120 (228)
381 PRK07671 cystathionine beta-ly 92.4 3.4 7.4E-05 33.6 11.3 122 4-133 49-174 (377)
382 PF02826 2-Hacid_dh_C: D-isome 92.4 1.7 3.8E-05 31.3 8.7 86 18-127 34-124 (178)
383 PF00072 Response_reg: Respons 92.3 2 4.3E-05 27.6 9.6 76 47-129 1-78 (112)
384 KOG1201 Hydroxysteroid 17-beta 92.3 2.6 5.6E-05 33.2 9.8 83 19-105 37-123 (300)
385 PRK15001 SAM-dependent 23S rib 92.2 1.8 3.8E-05 35.4 9.3 106 9-130 34-142 (378)
386 PRK08248 O-acetylhomoserine am 92.1 3.7 8.1E-05 34.2 11.4 123 4-133 63-189 (431)
387 PF11312 DUF3115: Protein of u 92.1 0.57 1.2E-05 37.0 6.1 110 21-131 88-243 (315)
388 cd08301 alcohol_DH_plants Plan 92.0 3.4 7.3E-05 33.3 10.9 103 16-131 184-290 (369)
389 COG1062 AdhC Zn-dependent alco 92.0 3.3 7.2E-05 33.3 10.2 101 17-133 183-288 (366)
390 PRK09496 trkA potassium transp 91.9 3 6.4E-05 34.6 10.7 95 20-127 231-328 (453)
391 cd08277 liver_alcohol_DH_like 91.9 4.3 9.3E-05 32.7 11.4 102 17-131 182-287 (365)
392 cd05278 FDH_like Formaldehyde 91.9 2.4 5.1E-05 33.6 9.8 101 17-129 165-266 (347)
393 TIGR00675 dcm DNA-methyltransf 91.9 0.61 1.3E-05 37.1 6.3 68 23-105 1-68 (315)
394 PRK07502 cyclohexadienyl dehyd 91.9 1.5 3.2E-05 34.6 8.5 88 21-127 7-97 (307)
395 PTZ00357 methyltransferase; Pr 91.8 1 2.2E-05 39.5 7.8 104 22-125 703-830 (1072)
396 TIGR02822 adh_fam_2 zinc-bindi 91.8 4.2 9.2E-05 32.3 11.1 92 17-131 163-255 (329)
397 PRK05708 2-dehydropantoate 2-r 91.8 1.4 3.1E-05 34.8 8.2 96 21-128 3-102 (305)
398 PRK07811 cystathionine gamma-s 91.7 4.2 9E-05 33.3 11.1 122 4-133 60-186 (388)
399 PF01262 AlaDh_PNT_C: Alanine 91.6 0.22 4.7E-06 35.7 3.2 99 17-128 17-137 (168)
400 PRK10669 putative cation:proto 91.5 0.89 1.9E-05 39.0 7.3 93 21-128 418-513 (558)
401 cd08233 butanediol_DH_like (2R 91.4 4.8 0.0001 32.0 11.1 101 17-130 170-272 (351)
402 PRK08247 cystathionine gamma-s 91.3 6.8 0.00015 31.7 13.9 121 4-132 51-175 (366)
403 cd08261 Zn_ADH7 Alcohol dehydr 91.3 3.8 8.3E-05 32.3 10.4 100 16-128 156-256 (337)
404 KOG0022 Alcohol dehydrogenase, 91.2 2.8 6.1E-05 33.4 9.0 106 16-132 189-296 (375)
405 PRK11064 wecC UDP-N-acetyl-D-m 91.2 3.3 7.1E-05 34.3 10.0 104 21-134 4-123 (415)
406 PF03721 UDPG_MGDP_dh_N: UDP-g 91.2 4.6 9.9E-05 29.5 12.8 104 22-135 2-125 (185)
407 PRK03659 glutathione-regulated 91.1 0.87 1.9E-05 39.5 6.9 93 21-128 401-496 (601)
408 PRK06176 cystathionine gamma-s 91.1 5.6 0.00012 32.5 11.3 122 4-133 49-174 (380)
409 cd08278 benzyl_alcohol_DH Benz 91.1 3.8 8.2E-05 33.0 10.3 97 17-129 184-284 (365)
410 TIGR01425 SRP54_euk signal rec 91.1 5.8 0.00013 33.0 11.3 107 20-132 100-223 (429)
411 KOG0023 Alcohol dehydrogenase, 91.0 0.89 1.9E-05 36.1 6.1 100 19-132 181-281 (360)
412 TIGR00936 ahcY adenosylhomocys 91.0 4 8.7E-05 33.7 10.2 87 18-129 193-281 (406)
413 cd01488 Uba3_RUB Ubiquitin act 90.9 3.5 7.7E-05 32.4 9.5 86 22-115 1-107 (291)
414 PLN02662 cinnamyl-alcohol dehy 90.9 2 4.4E-05 33.7 8.3 79 19-104 3-84 (322)
415 cd08286 FDH_like_ADH2 formalde 90.8 5.9 0.00013 31.4 11.1 100 17-128 164-264 (345)
416 TIGR02819 fdhA_non_GSH formald 90.8 6.5 0.00014 32.2 11.4 104 17-132 183-301 (393)
417 PF13460 NAD_binding_10: NADH( 90.8 4.5 9.8E-05 28.8 10.4 66 23-105 1-69 (183)
418 PRK07688 thiamine/molybdopteri 90.8 5.2 0.00011 32.2 10.6 81 18-105 22-125 (339)
419 PLN02256 arogenate dehydrogena 90.6 3.8 8.3E-05 32.4 9.6 97 9-126 25-123 (304)
420 KOG0053 Cystathionine beta-lya 90.6 8.7 0.00019 31.7 13.5 124 5-135 77-204 (409)
421 PRK08861 cystathionine gamma-s 90.5 8.6 0.00019 31.6 14.5 124 4-135 52-180 (388)
422 TIGR01328 met_gam_lyase methio 90.5 7 0.00015 32.0 11.4 123 4-133 58-184 (391)
423 PF00899 ThiF: ThiF family; I 90.5 3.4 7.5E-05 28.2 8.3 79 20-105 2-101 (135)
424 PRK07582 cystathionine gamma-l 90.5 6 0.00013 32.1 10.9 118 4-132 50-171 (366)
425 PF02558 ApbA: Ketopantoate re 90.2 0.43 9.2E-06 33.2 3.6 89 23-128 1-99 (151)
426 cd05213 NAD_bind_Glutamyl_tRNA 90.2 8 0.00017 30.6 11.3 99 18-134 176-276 (311)
427 PRK09422 ethanol-active dehydr 90.2 5.3 0.00012 31.5 10.2 99 16-128 159-259 (338)
428 cd01484 E1-2_like Ubiquitin ac 90.1 6 0.00013 30.1 9.9 85 22-114 1-109 (234)
429 PRK05808 3-hydroxybutyryl-CoA 90.1 5.5 0.00012 30.9 10.0 93 21-127 4-115 (282)
430 PRK07417 arogenate dehydrogena 90.0 2.7 5.8E-05 32.7 8.2 85 22-126 2-87 (279)
431 PRK06460 hypothetical protein; 90.0 9.3 0.0002 31.1 12.5 123 4-133 44-170 (376)
432 cd00755 YgdL_like Family of ac 89.9 7.1 0.00015 29.6 10.1 82 18-105 9-111 (231)
433 PRK12921 2-dehydropantoate 2-r 89.8 2.4 5.3E-05 33.1 8.0 34 95-128 67-100 (305)
434 PRK08762 molybdopterin biosynt 89.8 5.5 0.00012 32.5 10.1 81 18-105 133-234 (376)
435 PRK05476 S-adenosyl-L-homocyst 89.8 11 0.00023 31.5 12.6 86 19-129 211-298 (425)
436 TIGR02080 O_succ_thio_ly O-suc 89.7 9.4 0.0002 31.2 11.5 124 4-134 50-177 (382)
437 cd05279 Zn_ADH1 Liver alcohol 89.7 7 0.00015 31.4 10.7 101 17-130 181-285 (365)
438 PF02153 PDH: Prephenate dehyd 89.7 1.1 2.3E-05 34.5 5.7 74 35-127 3-76 (258)
439 PRK08324 short chain dehydroge 89.6 8 0.00017 34.2 11.6 82 20-105 422-507 (681)
440 COG0287 TyrA Prephenate dehydr 89.6 3.1 6.7E-05 32.5 8.2 89 21-127 4-95 (279)
441 cd05285 sorbitol_DH Sorbitol d 89.5 4.7 0.0001 32.0 9.5 100 17-129 160-264 (343)
442 PRK05599 hypothetical protein; 89.4 4.7 0.0001 30.4 9.0 78 22-104 2-85 (246)
443 cd08232 idonate-5-DH L-idonate 89.3 6.5 0.00014 31.0 10.2 95 19-128 165-260 (339)
444 PRK09496 trkA potassium transp 89.3 4.9 0.00011 33.3 9.8 92 22-127 2-96 (453)
445 PF11899 DUF3419: Protein of u 89.3 0.72 1.6E-05 37.7 4.6 59 71-134 275-338 (380)
446 PRK03562 glutathione-regulated 89.2 1.4 3.1E-05 38.4 6.7 92 21-127 401-495 (621)
447 cd00544 CobU Adenosylcobinamid 89.2 6.6 0.00014 28.2 9.9 66 96-168 73-156 (169)
448 PRK08249 cystathionine gamma-s 89.1 11 0.00023 31.1 11.4 123 4-133 63-189 (398)
449 cd00614 CGS_like CGS_like: Cys 88.9 11 0.00024 30.5 12.4 123 4-133 39-165 (369)
450 PRK08133 O-succinylhomoserine 88.9 12 0.00025 30.7 11.8 122 4-132 60-185 (390)
451 COG1086 Predicted nucleoside-d 88.9 4.5 9.7E-05 34.7 9.0 87 14-105 244-334 (588)
452 PF06690 DUF1188: Protein of u 88.8 1.1 2.3E-05 34.0 4.8 46 13-60 35-80 (252)
453 cd01492 Aos1_SUMO Ubiquitin ac 88.8 7.8 0.00017 28.5 9.6 80 18-105 19-119 (197)
454 PLN02514 cinnamyl-alcohol dehy 88.7 11 0.00024 30.2 11.5 96 19-131 180-276 (357)
455 cd08263 Zn_ADH10 Alcohol dehyd 88.7 6.7 0.00015 31.5 9.9 96 18-128 186-285 (367)
456 PRK08293 3-hydroxybutyryl-CoA 88.6 6.5 0.00014 30.6 9.5 95 21-127 4-117 (287)
457 PRK06249 2-dehydropantoate 2-r 88.6 2.8 6.1E-05 33.1 7.5 34 95-128 71-104 (313)
458 PLN02989 cinnamyl-alcohol dehy 88.6 3.9 8.5E-05 32.2 8.4 79 19-104 4-85 (325)
459 PRK05690 molybdopterin biosynt 88.6 9.3 0.0002 29.2 10.7 80 19-105 31-131 (245)
460 PRK08306 dipicolinate synthase 88.5 11 0.00023 29.8 10.8 87 19-127 151-238 (296)
461 PRK05613 O-acetylhomoserine am 88.5 14 0.00029 31.0 11.7 121 4-132 68-194 (437)
462 PRK06084 O-acetylhomoserine am 88.4 6.2 0.00013 32.8 9.6 123 4-133 57-183 (425)
463 cd01487 E1_ThiF_like E1_ThiF_l 88.3 7.6 0.00017 27.9 9.5 77 22-105 1-97 (174)
464 PRK08507 prephenate dehydrogen 88.3 3.2 6.8E-05 32.2 7.5 84 22-127 2-88 (275)
465 PF01408 GFO_IDH_MocA: Oxidore 88.2 5.6 0.00012 26.2 8.8 90 22-130 2-93 (120)
466 PF02719 Polysacc_synt_2: Poly 88.2 3.1 6.7E-05 32.8 7.3 77 24-105 2-86 (293)
467 PRK15182 Vi polysaccharide bio 88.0 9.4 0.0002 31.8 10.5 41 19-61 5-45 (425)
468 PRK12439 NAD(P)H-dependent gly 88.0 2.4 5.1E-05 34.1 6.8 97 18-127 5-108 (341)
469 COG2933 Predicted SAM-dependen 88.0 1.7 3.8E-05 33.6 5.6 71 17-105 209-279 (358)
470 PRK06522 2-dehydropantoate 2-r 87.9 9 0.0002 29.8 10.0 93 22-128 2-98 (304)
471 PTZ00075 Adenosylhomocysteinas 87.9 6.8 0.00015 33.1 9.5 86 18-128 252-339 (476)
472 PRK05597 molybdopterin biosynt 87.9 10 0.00022 30.7 10.4 81 18-105 26-127 (355)
473 PRK07503 methionine gamma-lyas 87.9 13 0.00027 30.7 11.1 123 4-133 64-190 (403)
474 PLN02427 UDP-apiose/xylose syn 87.9 1.8 3.9E-05 35.2 6.2 76 18-104 12-94 (386)
475 PRK05786 fabG 3-ketoacyl-(acyl 87.9 9.2 0.0002 28.3 15.5 82 19-104 4-89 (238)
476 PRK07063 short chain dehydroge 87.9 9.5 0.00021 28.8 9.9 85 19-104 6-94 (260)
477 PRK07050 cystathionine beta-ly 87.8 14 0.0003 30.3 12.9 123 4-133 64-190 (394)
478 PRK14620 NAD(P)H-dependent gly 87.7 3.5 7.6E-05 32.7 7.6 94 22-127 2-103 (326)
479 PF06460 NSP13: Coronavirus NS 87.6 3.9 8.5E-05 31.6 7.2 90 19-129 61-168 (299)
480 PLN02353 probable UDP-glucose 87.6 16 0.00035 30.9 12.4 42 21-62 2-44 (473)
481 PRK08644 thiamine biosynthesis 87.6 9.9 0.00021 28.4 10.1 79 18-103 26-124 (212)
482 PRK07066 3-hydroxybutyryl-CoA 87.5 6.5 0.00014 31.4 8.9 97 20-131 7-119 (321)
483 COG1893 ApbA Ketopantoate redu 87.4 2.9 6.2E-05 33.2 6.9 35 94-128 65-99 (307)
484 PRK15181 Vi polysaccharide bio 87.4 3.2 6.9E-05 33.2 7.3 79 19-104 14-98 (348)
485 PF04072 LCM: Leucine carboxyl 87.4 5.9 0.00013 28.7 8.1 92 11-104 69-165 (183)
486 PF03269 DUF268: Caenorhabditi 87.4 6.4 0.00014 28.2 7.7 95 20-129 2-110 (177)
487 PLN03209 translocon at the inn 87.3 4.1 8.8E-05 35.2 8.0 79 19-104 79-167 (576)
488 PRK15057 UDP-glucose 6-dehydro 87.3 3.3 7.2E-05 34.0 7.4 39 22-62 2-40 (388)
489 PRK07049 methionine gamma-lyas 87.3 16 0.00034 30.4 12.2 129 4-133 82-220 (427)
490 PRK08655 prephenate dehydrogen 87.2 4.3 9.2E-05 33.9 8.0 87 22-127 2-89 (437)
491 COG0626 MetC Cystathionine bet 87.1 16 0.00034 30.2 12.5 124 4-134 62-190 (396)
492 PRK10083 putative oxidoreducta 87.0 10 0.00022 29.8 10.0 99 17-129 158-258 (339)
493 cd08260 Zn_ADH6 Alcohol dehydr 87.0 9.9 0.00021 30.1 9.9 98 17-128 163-262 (345)
494 PRK07680 late competence prote 87.0 6.4 0.00014 30.4 8.5 87 22-127 2-93 (273)
495 PRK12429 3-hydroxybutyrate deh 87.0 7.6 0.00016 29.1 8.9 83 19-104 3-89 (258)
496 PF11899 DUF3419: Protein of u 86.8 2 4.4E-05 35.1 5.8 48 11-61 27-74 (380)
497 TIGR02355 moeB molybdopterin s 86.8 12 0.00026 28.5 10.5 81 18-105 22-123 (240)
498 cd08231 MDR_TM0436_like Hypoth 86.7 15 0.00032 29.4 11.3 101 19-129 177-279 (361)
499 cd08296 CAD_like Cinnamyl alco 86.6 10 0.00022 29.9 9.8 97 16-128 160-257 (333)
500 cd08265 Zn_ADH3 Alcohol dehydr 86.5 13 0.00028 30.2 10.4 101 18-129 202-306 (384)
No 1
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=3.9e-40 Score=243.00 Aligned_cols=179 Identities=44% Similarity=0.729 Sum_probs=161.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (187)
Q Consensus 1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~ 80 (187)
|+++++++++|..|++..+|++||||||++|++++++++++|++++++++|.+++..+.|+++++..|+.++++++.+|+
T Consensus 27 ~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 27 MSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp GSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred CccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 57899999999999999999999999999999999999999888999999999999999999999999989999999999
Q ss_pred hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836 81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN 160 (187)
Q Consensus 81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (187)
.++++.+.+... .++||+||+|+++..|..+|+.+.++|++||+|++||++|.|.+..+.... .....+++|+
T Consensus 107 ~~~l~~l~~~~~-~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~------~~~~~ir~f~ 179 (205)
T PF01596_consen 107 LEVLPELANDGE-EGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDED------PKTVAIREFN 179 (205)
T ss_dssp HHHHHHHHHTTT-TTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGS------HHHHHHHHHH
T ss_pred HhhHHHHHhccC-CCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchh------hhHHHHHHHH
Confidence 999998865421 258999999999999999999999999999999999999999998885432 3344599999
Q ss_pred HHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836 161 KALAVDPRIEICQISIADGVTLCRRI 186 (187)
Q Consensus 161 ~~~~~~~~~~~~~~p~~~G~~i~~k~ 186 (187)
+.+.++|+++++++|+|+|+.+++||
T Consensus 180 ~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 180 EYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp HHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred HHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 99999999999999999999999996
No 2
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=7.9e-39 Score=241.71 Aligned_cols=187 Identities=79% Similarity=1.290 Sum_probs=168.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (187)
Q Consensus 1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~ 80 (187)
|+++++++++|..+++..++++|||||+++|+++++++..++++++++++|.+++..+.|+++++..|+.++++++.|++
T Consensus 61 ~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a 140 (247)
T PLN02589 61 MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140 (247)
T ss_pred CccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccH
Confidence 67899999999999999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836 81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN 160 (187)
Q Consensus 81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (187)
.+.++.+.+.+...++||+||+|+++..|..+|+.+.++|++||+|++||++|.|.+.++.......+.+.....+++|+
T Consensus 141 ~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn 220 (247)
T PLN02589 141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELN 220 (247)
T ss_pred HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHH
Confidence 99999875432113689999999999999999999999999999999999999999888754332333344556789999
Q ss_pred HHHhcCCCeeEEEeecCCeeEEEEEcC
Q 029836 161 KALAVDPRIEICQISIADGVTLCRRIG 187 (187)
Q Consensus 161 ~~~~~~~~~~~~~~p~~~G~~i~~k~~ 187 (187)
+.+..++++..+++|+|+|+.+++|++
T Consensus 221 ~~v~~d~~~~~~llPigDGl~l~~k~~ 247 (247)
T PLN02589 221 KALAADPRIEICMLPVGDGITLCRRIS 247 (247)
T ss_pred HHHHhCCCEEEEEEEeCCccEEEEEeC
Confidence 999999999999999999999999975
No 3
>PLN02476 O-methyltransferase
Probab=100.00 E-value=3.2e-37 Score=235.57 Aligned_cols=179 Identities=40% Similarity=0.691 Sum_probs=163.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (187)
Q Consensus 1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~ 80 (187)
|++++++++++..++...++++||||||++|+++++++..++++++++++|.+++.++.|++++++.|+.++++++.||+
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA 179 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA 179 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 67899999999999999999999999999999999999998877899999999999999999999999988999999999
Q ss_pred hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836 81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN 160 (187)
Q Consensus 81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (187)
.+.++.+..++ ..++||+||+|+++..|..+++.+.++|++||+|++||++|.|.+.++...+ .....+++|+
T Consensus 180 ~e~L~~l~~~~-~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d------~~t~~ir~fn 252 (278)
T PLN02476 180 AESLKSMIQNG-EGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVND------AKTISIRNFN 252 (278)
T ss_pred HHHHHHHHhcc-cCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCC------HHHHHHHHHH
Confidence 99998764322 1358999999999999999999999999999999999999999998876533 1245899999
Q ss_pred HHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836 161 KALAVDPRIEICQISIADGVTLCRRI 186 (187)
Q Consensus 161 ~~~~~~~~~~~~~~p~~~G~~i~~k~ 186 (187)
+.+.++++++.+++|+|+|+.+++|+
T Consensus 253 ~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 253 KKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred HHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 99999999999999999999999986
No 4
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=224.30 Aligned_cols=174 Identities=36% Similarity=0.627 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe-CCchHH
Q 029836 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE-GPALPL 83 (187)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~ 83 (187)
|+++++|..|+...++++|||||++.|+|++|++..+|.+++++++|.++++.+.|++|+++.|..++++++. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 8999999999999999999999999999999999999877999999999999999999999999999999999 699998
Q ss_pred HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHH
Q 029836 84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKAL 163 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (187)
+.... .++||+||+|+++..|+.+|+.+.++|+|||++++||++|+|.+..+.. +..+.....+++|++.+
T Consensus 125 l~~~~-----~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~----~~~~~~~~~~~~~~~~~ 195 (219)
T COG4122 125 LSRLL-----DGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSI----RDARTQVRGVRDFNDYL 195 (219)
T ss_pred HHhcc-----CCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccc----hhHHHHHHHHHHHHHHH
Confidence 88632 6899999999999999999999999999999999999999999877754 33456777899999999
Q ss_pred hcCCCeeEEEeecCCeeEEEEEcC
Q 029836 164 AVDPRIEICQISIADGVTLCRRIG 187 (187)
Q Consensus 164 ~~~~~~~~~~~p~~~G~~i~~k~~ 187 (187)
.++|++..+++|+|+|+.+++|++
T Consensus 196 ~~~~~~~t~~lP~gDGl~v~~k~~ 219 (219)
T COG4122 196 LEDPRYDTVLLPLGDGLLLSRKRG 219 (219)
T ss_pred hhCcCceeEEEecCCceEEEeecC
Confidence 999999999999999999999975
No 5
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=6.1e-36 Score=225.96 Aligned_cols=184 Identities=60% Similarity=0.956 Sum_probs=165.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (187)
Q Consensus 1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~ 80 (187)
|+++++++++|+.++...++++|||+|||+|+++++++..++++++++++|+++++++.|+++++++++.++++++++|+
T Consensus 50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda 129 (234)
T PLN02781 50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA 129 (234)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence 67899999999999999999999999999999999999988777899999999999999999999999988999999999
Q ss_pred hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHH
Q 029836 81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELN 160 (187)
Q Consensus 81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (187)
.+.++.+.++. ..++||+||+|+.+..|..+++.+.++|+|||+++++|++|.|.+.++... .+++.+.....+++|+
T Consensus 130 ~~~L~~l~~~~-~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~-~~~~~~~~~~~ir~~~ 207 (234)
T PLN02781 130 LSALDQLLNND-PKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDE-VPEHMRAYRKALLEFN 207 (234)
T ss_pred HHHHHHHHhCC-CCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccc-cchhhhHHHHHHHHHH
Confidence 99888764321 035899999999999999999999999999999999999999998887542 2334455678899999
Q ss_pred HHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836 161 KALAVDPRIEICQISIADGVTLCRRI 186 (187)
Q Consensus 161 ~~~~~~~~~~~~~~p~~~G~~i~~k~ 186 (187)
+.+..+|++.++++|+|+|+.+++|+
T Consensus 208 ~~i~~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 208 KLLASDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred HHHhhCCCeEEEEEEeCCccEEEEEe
Confidence 99999999999999999999999985
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.1e-35 Score=213.36 Aligned_cols=180 Identities=53% Similarity=0.919 Sum_probs=164.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (187)
Q Consensus 1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~ 80 (187)
|+++|++++|++.+++..+++++||||+++|+|++.+|.++|++++|+++|+++...+.+.+..+..|...+++++++++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHH---
Q 029836 81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQ--- 157 (187)
Q Consensus 81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 157 (187)
.+.+.++.+.+ +.++||++|+|+++..|..+++++.+++|+||+|++||++|.|.+..|+... ......++
T Consensus 135 ~esLd~l~~~~-~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~-----~~~~~~~r~~~ 208 (237)
T KOG1663|consen 135 LESLDELLADG-ESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNT-----PVRGRSIREAL 208 (237)
T ss_pred hhhHHHHHhcC-CCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCC-----Ccchhhhhhhh
Confidence 99999887765 3679999999999999999999999999999999999999999776665432 11234455
Q ss_pred HHHHHHhcCCCeeEEEeecCCeeEEEEEc
Q 029836 158 ELNKALAVDPRIEICQISIADGVTLCRRI 186 (187)
Q Consensus 158 ~~~~~~~~~~~~~~~~~p~~~G~~i~~k~ 186 (187)
++++.+..+|+++.+.+|+|+|+++++|+
T Consensus 209 ~~n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 209 NLNKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred hhhhHhccCcceeeEeeeccCceeeeccC
Confidence 99999999999999999999999999985
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.81 E-value=4.2e-19 Score=119.47 Aligned_cols=104 Identities=23% Similarity=0.367 Sum_probs=87.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
++.+|||+|||+|..+.++++..+ +.+++++|+++++++.+++++...+..++++++++|+ ...... .++||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence 467999999999999999998545 7899999999999999999998888889999999999 433332 56899
Q ss_pred EEEEcC-CC------cccHHHHHHHHhcccCCeEEEEeC
Q 029836 99 FVFVDA-DK------DNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 99 ~v~~d~-~~------~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+|++.. .. +....+++.+.+.|+|||+++++.
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999988 32 233567999999999999999864
No 8
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.79 E-value=1.4e-17 Score=119.27 Aligned_cols=120 Identities=23% Similarity=0.246 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+.++...+.-..+...+..+++|||||+|..+++++...| .++++++|-++++++..++|.++++. +|++++.|++.+
T Consensus 18 TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~ 95 (187)
T COG2242 18 TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPE 95 (187)
T ss_pred cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchH
Confidence 3455555555556677888999999999999999995544 89999999999999999999999995 899999999998
Q ss_pred HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
.++.+ .++|.||+.+. ......++.++..||+||.||++-+.
T Consensus 96 ~L~~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 96 ALPDL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred hhcCC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 88754 37999999998 88999999999999999999987554
No 9
>PRK04457 spermidine synthase; Provisional
Probab=99.77 E-value=7.2e-17 Score=124.03 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=94.7
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836 10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ 89 (187)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~ 89 (187)
++..+....++++|||||||.|.++.++++..| ..+++++|+++++++.|++++...+..++++++.+|+.++++..
T Consensus 57 m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-- 133 (262)
T PRK04457 57 MMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-- 133 (262)
T ss_pred HHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC--
Confidence 334444455789999999999999999998876 78999999999999999999876555578999999999888754
Q ss_pred cccCCCceeEEEEcCCCc-------ccHHHHHHHHhcccCCeEEEEe
Q 029836 90 DEKYHGTFDFVFVDADKD-------NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 90 ~~~~~~~~D~v~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|++|.... ...++++.+.+.|+|||+++++
T Consensus 134 ----~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 134 ----RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred ----CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 56899999997521 2378999999999999999985
No 10
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.76 E-value=2.4e-17 Score=112.62 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (187)
Q Consensus 6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~ 85 (187)
+....+...+...+.+++||+|||.|..+..+++..+ ..+++++|+++.+++.++++++..+. .+++++.+|+...++
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccCh
Confidence 3344344444445567999999999999999999876 58999999999999999999998877 478999988765433
Q ss_pred HHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 86 QLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 86 ~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.. .++||.|+++........+++.+.+.|+|||.++++
T Consensus 84 ~~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 84 DS------LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hh------cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 32 468999999876666778999999999999999975
No 11
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.76 E-value=4.3e-17 Score=120.56 Aligned_cols=111 Identities=24% Similarity=0.349 Sum_probs=95.1
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836 15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
+...+..+|||+|||+|..++.++...++..+|+++|+++.+++.++++++.+++.++++++.+|..+.++.. .
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~ 109 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------N 109 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------C
Confidence 3455678999999999999999988765568999999999999999999999986678999999998766654 4
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
++||.||+.........+++.+.+.|+|||.++++..
T Consensus 110 ~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 110 EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 6899999977666778899999999999999997543
No 12
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.74 E-value=3.6e-16 Score=114.64 Aligned_cols=115 Identities=21% Similarity=0.226 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (187)
Q Consensus 6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~ 85 (187)
....++-..+...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++..++ .+++++.+|....
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~-- 93 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIE-- 93 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhh--
Confidence 3344444444556778999999999999999998765 68999999999999999999998887 5799999887422
Q ss_pred HHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 86 QLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 86 ~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+ .++||+|+++.....+..+++.+.+.|+|||+++++..
T Consensus 94 -~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 94 -L------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred -c------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 1 35799999987666678889999999999999998653
No 13
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.73 E-value=7.4e-17 Score=117.48 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=87.8
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
...++.+|||+|||+|.++..++...+ +++|+++|+++.+++.++++.++.++ ++++++++|+.+... .+
T Consensus 39 ~~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~~--------~~ 108 (181)
T TIGR00138 39 EYLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQH--------EE 108 (181)
T ss_pred HhcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhccc--------cC
Confidence 344688999999999999999987654 68999999999999999999999887 479999999976421 46
Q ss_pred ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+||+|++++ ...+..+++.+.++|+|||.+++.
T Consensus 109 ~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 109 QFDVITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred CccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 899999987 456778889999999999999964
No 14
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.72 E-value=1e-16 Score=119.69 Aligned_cols=116 Identities=23% Similarity=0.356 Sum_probs=94.7
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+.|.....+-.++...++.+|||||||+|+.+..+++..++.++|+++|+++++++.++++++..+. .+++++++|+..
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~ 138 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTL 138 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCccc
Confidence 4566666666666777889999999999999999998876568999999999999999999999887 689999999875
Q ss_pred HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++. .++||+|+++......+ +.+.+.|+|||.+++.
T Consensus 139 ~~~~-------~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 139 GYEE-------NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCCc-------CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence 4432 46899999987644443 3566789999999873
No 15
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.72 E-value=1.1e-16 Score=118.95 Aligned_cols=113 Identities=24% Similarity=0.325 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ 86 (187)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~ 86 (187)
....+..++...+..+|||+|||+|+.+..+++.+++.++|+++|+++++++.++++++..+...+++++++|+.+.++.
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 33334344444566899999999999999999887656899999999999999999999988867899999998765442
Q ss_pred HhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 87 LIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 87 ~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+||.|+++......+ +.+.+.|+|||.+++.
T Consensus 140 -------~~~fD~Ii~~~~~~~~~---~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 140 -------HAPFDAIIVTAAASTIP---SALVRQLKDGGVLVIP 172 (205)
T ss_pred -------CCCccEEEEccCcchhh---HHHHHhcCcCcEEEEE
Confidence 46899999987644333 5677899999999874
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.71 E-value=8.4e-17 Score=121.47 Aligned_cols=113 Identities=20% Similarity=0.244 Sum_probs=83.3
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhccc
Q 029836 13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEK 92 (187)
Q Consensus 13 ~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~ 92 (187)
.++...++.+|||+|||+|.++..+++..++.++|+++|+++.+++.|++.++..+. .+++++++|+++. |--
T Consensus 41 ~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-~~i~~v~~da~~l-p~~----- 113 (233)
T PF01209_consen 41 KLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-QNIEFVQGDAEDL-PFP----- 113 (233)
T ss_dssp HHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S------
T ss_pred hccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-CCeeEEEcCHHHh-cCC-----
Confidence 334556778999999999999999998877678999999999999999999998877 4999999999764 311
Q ss_pred CCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 93 YHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 93 ~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+++||.|++.-. -.+....++++.+.|||||.+++-+...
T Consensus 114 -d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 114 -DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp -TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred -CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 679999998754 4567889999999999999998876643
No 17
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.71 E-value=1.5e-16 Score=112.88 Aligned_cols=108 Identities=24% Similarity=0.355 Sum_probs=90.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.+..+|||+|||+|..+..++..+.++.+++++|+++++++.|++.++..+.. +++|.++|..+ ++... .++|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCe
Confidence 35789999999999999999965555789999999999999999999999985 99999999987 44310 2689
Q ss_pred eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
|+|+.... ..+....++.+.++|++||.+++.+..
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999865 344567899999999999999987765
No 18
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.71 E-value=2.1e-16 Score=118.37 Aligned_cols=115 Identities=23% Similarity=0.345 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
.|.....+..++...++.+|||||||+|+.+..+++..+.+++|+++|+++++++.|+++++..++ ++++++++|+.+.
T Consensus 62 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~ 140 (215)
T TIGR00080 62 APHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQG 140 (215)
T ss_pred hHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccC
Confidence 344445555556667788999999999999999998866567899999999999999999999988 6899999998764
Q ss_pred HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
++. ..+||+|++++...... +.+.+.|+|||++++.
T Consensus 141 ~~~-------~~~fD~Ii~~~~~~~~~---~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 141 WEP-------LAPYDRIYVTAAGPKIP---EALIDQLKEGGILVMP 176 (215)
T ss_pred Ccc-------cCCCCEEEEcCCccccc---HHHHHhcCcCcEEEEE
Confidence 432 35899999987654443 4567889999999873
No 19
>PLN03075 nicotianamine synthase; Provisional
Probab=99.71 E-value=1.9e-16 Score=122.16 Aligned_cols=119 Identities=13% Similarity=0.141 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH-cCCCCceEEEeCCch
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTG-YSLLATALAIPDDGKILALDITKEHYEKGLPIIQK-AGVAHKIDFREGPAL 81 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G-~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~ 81 (187)
.+-..++++.+... ++++|+|||||.| .+++.++....++++++++|+++++++.|++.++. .++.++++|..+|+.
T Consensus 109 ~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~ 187 (296)
T PLN03075 109 SKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM 187 (296)
T ss_pred HHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence 34556667666655 8999999999955 45566665444479999999999999999999965 788889999999998
Q ss_pred HHHHHHhhcccCCCceeEEEEcCC----CcccHHHHHHHHhcccCCeEEEEeC
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDAD----KDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+..+. .+.||+||++.- ++.....++.+.+.|+|||++++-.
T Consensus 188 ~~~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 188 DVTES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred hcccc-------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 75322 368999999852 5788999999999999999999754
No 20
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.71 E-value=4.5e-16 Score=113.73 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=86.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
++.+|||+|||+|..+..++...+ +++|+++|+++++++.|+++.+..+.. +++++++|+.+... .++||
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~--------~~~fD 114 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ--------EEKFD 114 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC--------CCCcc
Confidence 478999999999999999998765 689999999999999999999999884 59999999976422 35899
Q ss_pred EEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 99 FVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+|++... ..+..+++.+.+.|+|||.+++-
T Consensus 115 lV~~~~~-~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 115 VVTSRAV-ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred EEEEccc-cCHHHHHHHHHHhcCCCeEEEEE
Confidence 9999763 45778999999999999999875
No 21
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=3.4e-16 Score=117.48 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=93.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
++.+|||+|||+|-++..+++..+ .++|+++|+++.|++.+++.....+... ++++++|+++. | +. +++||
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f~-----D~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-FP-----DNSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-CC-----CCccC
Confidence 689999999999999999999987 7999999999999999999999888754 99999999764 3 22 68999
Q ss_pred EEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836 99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWG 134 (187)
Q Consensus 99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
+|.+.-. -.+....++++.|.|||||.+++.+....
T Consensus 122 ~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 122 AVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred EEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 9998754 56789999999999999999998776543
No 22
>PRK00811 spermidine synthase; Provisional
Probab=99.70 E-value=1.2e-15 Score=118.55 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=87.6
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC----CCCceEEEeCCchHHHHHHhhccc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG----VAHKIDFREGPALPLLDQLIQDEK 92 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~l~~~~~~~~ 92 (187)
..++++||+||||.|..+.++++. +...+|++||+++++++.|++++...+ ..++++++.+|+..+++..
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~----- 147 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET----- 147 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----
Confidence 457899999999999999999875 335799999999999999999997543 1478999999999887653
Q ss_pred CCCceeEEEEcCCCc-------ccHHHHHHHHhcccCCeEEEEe
Q 029836 93 YHGTFDFVFVDADKD-------NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 93 ~~~~~D~v~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|++|.... ...++++.+.+.|+|||++++.
T Consensus 148 -~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 148 -ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred -CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 57899999996411 1267889999999999999863
No 23
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.70 E-value=8.2e-16 Score=113.55 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
.++...++...+...+..+|||+|||+|..+.+++...+ +++++++|+++++++.++++++..+. ++++++.+|+.+.
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~ 102 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHH
Confidence 445555555555666678999999999999999987655 68999999999999999999999887 5799999998765
Q ss_pred HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
++.+ ...+|.++++.. .....+++.+.+.|+|||.+++...
T Consensus 103 ~~~~------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 103 LAQL------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HhhC------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 5433 345688888753 4567889999999999999998653
No 24
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.70 E-value=3e-16 Score=113.38 Aligned_cols=109 Identities=20% Similarity=0.294 Sum_probs=87.7
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836 10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ 89 (187)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~ 89 (187)
+|...+...+.+++||+|||+|..++.+++..+ ..+|+++|+++.+++.++++++.++... ++++..|..+.++
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~---- 95 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP---- 95 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC----
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc----
Confidence 344444444888999999999999999998876 6789999999999999999999999865 9999999876543
Q ss_pred cccCCCceeEEEEcCCC----c----ccHHHHHHHHhcccCCeEEEE
Q 029836 90 DEKYHGTFDFVFVDADK----D----NYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 90 ~~~~~~~~D~v~~d~~~----~----~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.++||+|+++++. . ....+++.+.+.|+|||.+++
T Consensus 96 ----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 96 ----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp ----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 4799999999762 1 246788899999999998854
No 25
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.68 E-value=4e-15 Score=115.71 Aligned_cols=117 Identities=14% Similarity=0.196 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHh-h---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836 4 SPDEAQFFSMLLK-L---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP 79 (187)
Q Consensus 4 ~~~~~~~l~~l~~-~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d 79 (187)
.+++..++...+. . .++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.|++|++.+++.++++++++|
T Consensus 102 r~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D 180 (284)
T TIGR03533 102 RSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSD 180 (284)
T ss_pred CCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 4566666666543 1 2457999999999999999998876 689999999999999999999999887789999999
Q ss_pred chHHHHHHhhcccCCCceeEEEEcCCCc----------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029836 80 ALPLLDQLIQDEKYHGTFDFVFVDADKD----------------------------NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~D~v~~d~~~~----------------------------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+.++ .++||+|+++++.. .+..++..+.+.|+|||.+++.
T Consensus 181 ~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 181 LFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred hhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 865432 35799999986510 1245677788999999999874
No 26
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.68 E-value=8.4e-16 Score=117.93 Aligned_cols=103 Identities=15% Similarity=0.235 Sum_probs=87.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..+..+++. +.+|+++|+++++++.|+++.+..++.++++++++++.+..+.. .++|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~f 113 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPV 113 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCC
Confidence 35679999999999999999875 57999999999999999999999888788999999997754322 5689
Q ss_pred eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEe
Q 029836 98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+|++... ..+...+++.+.++|||||++++.
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 99998754 345678899999999999999764
No 27
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=1e-15 Score=116.99 Aligned_cols=120 Identities=17% Similarity=0.222 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHH---hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836 3 TSPDEAQFFSMLL---KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP 79 (187)
Q Consensus 3 ~~~~~~~~l~~l~---~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d 79 (187)
+++.+..-+..++ .+.+++++||||||.|..++++++.. +.+|+++++|++..+.+++.+++.|+..++++...|
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d 130 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD 130 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc
Confidence 3444555555554 46678999999999999999999987 589999999999999999999999998899999998
Q ss_pred chHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836 80 ALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG 134 (187)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
..++ .+.||-|+.-+. ++.+..+|+.+.+.|+|||.++++.+...
T Consensus 131 ~rd~----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 131 YRDF----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred cccc----------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 8765 456999997654 67799999999999999999999887654
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.68 E-value=1.5e-15 Score=114.83 Aligned_cols=108 Identities=21% Similarity=0.384 Sum_probs=89.5
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
...++.+|||+|||+|.++..+++..++.++++++|+++.+++.++++++..+. ++++++++|+.+.. +. .+
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~-----~~ 113 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP--FD-----DN 113 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC--CC-----CC
Confidence 444568999999999999999998876578999999999999999999988776 68999999986532 11 46
Q ss_pred ceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 96 TFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 96 ~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+||+|++... ..++..+++.+.+.|+|||.+++.+.
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8999998653 35567889999999999999987554
No 29
>PRK01581 speE spermidine synthase; Validated
Probab=99.67 E-value=5.4e-15 Score=116.68 Aligned_cols=107 Identities=13% Similarity=0.188 Sum_probs=86.2
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHH--HH---HcCC-CCceEEEeCCchHHHHHHhh
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI--IQ---KAGV-AHKIDFREGPALPLLDQLIQ 89 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~--~~---~~~~-~~~i~~~~~d~~~~l~~~~~ 89 (187)
...+|++||+||||.|..+.++++. ++..+|++||+++++++.|++. +. +... .++++++.+|+.++++..
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-- 223 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-- 223 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--
Confidence 4568899999999999999988875 3358999999999999999973 22 1122 479999999999988764
Q ss_pred cccCCCceeEEEEcCCCc--------ccHHHHHHHHhcccCCeEEEEe
Q 029836 90 DEKYHGTFDFVFVDADKD--------NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 90 ~~~~~~~~D~v~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|++|.... ...++++.+.+.|+|||++++.
T Consensus 224 ----~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 224 ----SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ----CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 56899999996421 1267899999999999999874
No 30
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.9e-16 Score=112.19 Aligned_cols=112 Identities=21% Similarity=0.339 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+.|.....+-+++...++.+|||||||+|+.+.-+++.. .+|+++|..++..+.|+++++..|. .|+.++++|...
T Consensus 56 s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~gDG~~ 131 (209)
T COG2518 56 SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY-ENVTVRHGDGSK 131 (209)
T ss_pred cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC-CceEEEECCccc
Confidence 345555666667778889999999999999999999863 4999999999999999999999999 469999999987
Q ss_pred HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
-++. ..+||.|++.+.....+. .+.+.|++||.+++
T Consensus 132 G~~~-------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~ 167 (209)
T COG2518 132 GWPE-------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVI 167 (209)
T ss_pred CCCC-------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEE
Confidence 6664 469999999887555544 34458899999986
No 31
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.66 E-value=1e-15 Score=113.56 Aligned_cols=117 Identities=21% Similarity=0.341 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (187)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 84 (187)
+.+..+.+.+.. +..+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...+. ++++++++|+.+.+
T Consensus 28 ~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l 103 (202)
T PRK00121 28 PAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVL 103 (202)
T ss_pred CCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHH
Confidence 344455555544 577999999999999999998776 67999999999999999999998877 68999999994444
Q ss_pred HHHhhcccCCCceeEEEEcCC---Cc--------ccHHHHHHHHhcccCCeEEEEe
Q 029836 85 DQLIQDEKYHGTFDFVFVDAD---KD--------NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~---~~--------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+...+ .++||.|++... .. ....+++.+.+.|+|||++++.
T Consensus 104 ~~~~~----~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 104 LDMFP----DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred HHHcC----ccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 43211 468999998532 11 2578899999999999999874
No 32
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.66 E-value=6.8e-16 Score=114.47 Aligned_cols=115 Identities=20% Similarity=0.287 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+.|.....+-.++...+..+|||||||+|+.+..++....+.++|+++|+++...+.|+++++..+. .+++++++|...
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~ 134 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSE 134 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGG
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhh
Confidence 3455555555666677889999999999999999998876668999999999999999999999988 589999999876
Q ss_pred HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
-++. ..+||.|++.+.....+. .+.+.|++||.||+
T Consensus 135 g~~~-------~apfD~I~v~~a~~~ip~---~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 135 GWPE-------EAPFDRIIVTAAVPEIPE---ALLEQLKPGGRLVA 170 (209)
T ss_dssp TTGG-------G-SEEEEEESSBBSS--H---HHHHTEEEEEEEEE
T ss_pred cccc-------CCCcCEEEEeeccchHHH---HHHHhcCCCcEEEE
Confidence 5553 468999999887555443 45568999999996
No 33
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.66 E-value=5.8e-15 Score=121.16 Aligned_cols=160 Identities=21% Similarity=0.245 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (187)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 84 (187)
.....++..++...++.+|||+|||+|..+..+++..+..++|+++|+++.+++.++++++..|+ .+++++++|+.+..
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~ 316 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLL 316 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcc
Confidence 34455556666666778999999999999999998876568999999999999999999999998 46999999987653
Q ss_pred HHHhhcccCCCceeEEEEcCCCc---------c----------------cHHHHHHHHhcccCCeEEEEeCcCCCccccC
Q 029836 85 DQLIQDEKYHGTFDFVFVDADKD---------N----------------YVNYHKRLIELVKVGGVIGYDNTLWGGSVVA 139 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~ 139 (187)
..... ..++||.|++|++.. + ....++.+.++|||||.|++..+....
T Consensus 317 ~~~~~---~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~---- 389 (434)
T PRK14901 317 ELKPQ---WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP---- 389 (434)
T ss_pred ccccc---ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh----
Confidence 21100 035899999997521 0 246788889999999999987654321
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHhcCCCeeEE-----Eeec---CCeeEEEEE
Q 029836 140 PPDADLDEHFLYLRDFVQELNKALAVDPRIEIC-----QISI---ADGVTLCRR 185 (187)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~---~~G~~i~~k 185 (187)
. +....+...+..+|+|... ++|- .+|+-+++-
T Consensus 390 ----------~---Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l 430 (434)
T PRK14901 390 ----------A---ENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVL 430 (434)
T ss_pred ----------h---hHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEE
Confidence 1 1223334445667777543 3452 488877753
No 34
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.65 E-value=1.4e-15 Score=102.96 Aligned_cols=102 Identities=23% Similarity=0.366 Sum_probs=85.6
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~ 99 (187)
+.+|||+|||+|..+..+++.. ..+++++|+++..++.++.+++..+...+++++++|..+..+.+. .++||+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~-----~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP-----DGKFDL 73 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-----TT-EEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-----CceeEE
Confidence 3589999999999999999875 589999999999999999999999988899999999987764442 579999
Q ss_pred EEEcCCCc-----------ccHHHHHHHHhcccCCeEEEE
Q 029836 100 VFVDADKD-----------NYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 100 v~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+.+++.. .+..+++.+.++|+|||++++
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 99997621 246789999999999999986
No 35
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.65 E-value=1.8e-15 Score=113.66 Aligned_cols=115 Identities=17% Similarity=0.288 Sum_probs=98.4
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836 8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL 87 (187)
Q Consensus 8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~ 87 (187)
+-+|..++......+|||+|||+|..++.+++..+ ..++++||+++++.+.|+++++.+++.++++++++|..++.+..
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 34667777777788999999999999999998866 49999999999999999999999999999999999998887765
Q ss_pred hhcccCCCceeEEEEcCC------C---------------cccHHHHHHHHhcccCCeEEEE
Q 029836 88 IQDEKYHGTFDFVFVDAD------K---------------DNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 88 ~~~~~~~~~~D~v~~d~~------~---------------~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
. ..+||+|+++++ . -...++++.+..+||+||.+.+
T Consensus 112 ~-----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 112 V-----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred c-----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 2 457999999876 0 1236788888999999999986
No 36
>PLN02366 spermidine synthase
Probab=99.65 E-value=1.6e-14 Score=113.09 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=88.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC--C-CCceEEEeCCchHHHHHHhhcccC
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--V-AHKIDFREGPALPLLDQLIQDEKY 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~ 93 (187)
..++++||+||||.|..+.++++. ++..+++.||+++..++.+++++...+ + .++++++.+|+.+++....
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~----- 162 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP----- 162 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----
Confidence 467899999999999999999876 435799999999999999999987642 2 3689999999998886541
Q ss_pred CCceeEEEEcCCCc-------ccHHHHHHHHhcccCCeEEEEe
Q 029836 94 HGTFDFVFVDADKD-------NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 94 ~~~~D~v~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|++|.... ...++++.+.+.|+|||+++..
T Consensus 163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 35899999997521 2357899999999999999853
No 37
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.65 E-value=3.3e-15 Score=114.88 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=87.7
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH--cCCCCceEEEeCCchHHHHHHhhcccC
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK--AGVAHKIDFREGPALPLLDQLIQDEKY 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~--~~~~~~i~~~~~d~~~~l~~~~~~~~~ 93 (187)
...++.+|||+|||+|..+..+++..++.++|+++|+++++++.|+++... ....++++++++|+.+. + +.
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~~----- 142 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-FD----- 142 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-CC-----
Confidence 445678999999999999999988765467999999999999999877642 22335899999998653 2 11
Q ss_pred CCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 94 HGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 94 ~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+++||+|++... ..+...++.++.+.|||||.+++.+...
T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 568999987643 3466789999999999999999877654
No 38
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.2e-14 Score=111.96 Aligned_cols=147 Identities=18% Similarity=0.208 Sum_probs=106.9
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (187)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~ 88 (187)
++|..+.. +++++||+|||+|..++..++. + ..+++++|++|.+++.+++|.+.+++...++....+..+...
T Consensus 154 ~~Le~~~~--~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~--- 226 (300)
T COG2264 154 EALEKLLK--KGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE--- 226 (300)
T ss_pred HHHHHhhc--CCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc---
Confidence 44444433 7899999999999999987764 3 478999999999999999999999886534333333332222
Q ss_pred hcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHHhcCCC
Q 029836 89 QDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPR 168 (187)
Q Consensus 89 ~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (187)
.++||+|+++.-.+-...+...+.++++|||+++++.++-. ....+.+.+.....
T Consensus 227 -----~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~--------------------q~~~V~~a~~~~gf 281 (300)
T COG2264 227 -----NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILED--------------------QAESVAEAYEQAGF 281 (300)
T ss_pred -----cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHh--------------------HHHHHHHHHHhCCC
Confidence 46999999987666677888889999999999999886632 22334444444434
Q ss_pred eeEEEeecCCeeEEEEEcC
Q 029836 169 IEICQISIADGVTLCRRIG 187 (187)
Q Consensus 169 ~~~~~~p~~~G~~i~~k~~ 187 (187)
......--+++.++..||+
T Consensus 282 ~v~~~~~~~eW~~i~~kr~ 300 (300)
T COG2264 282 EVVEVLEREEWVAIVGKRK 300 (300)
T ss_pred eEeEEEecCCEEEEEEEcC
Confidence 4444455688888888874
No 39
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.64 E-value=2.5e-16 Score=105.11 Aligned_cols=102 Identities=32% Similarity=0.587 Sum_probs=52.1
Q ss_pred EEEcccccHHHHHHHhhCCCCC--EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEE
Q 029836 24 MEIGVFTGYSLLATALAIPDDG--KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVF 101 (187)
Q Consensus 24 LeiG~g~G~~~~~l~~~~~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~ 101 (187)
||||++.|.++.++++.+++.. +++++|..+. .+.+++.+++.+...+++++++++.+.++.+. .+++|+++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEE
Confidence 7999999999999999887554 7999999986 44555666666777889999999999988774 36899999
Q ss_pred EcCCC--cccHHHHHHHHhcccCCeEEEEeCc
Q 029836 102 VDADK--DNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 102 ~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+|+.+ +.....++.+++.|+|||++++||+
T Consensus 75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 75 IDGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp EES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 99974 5577889999999999999999985
No 40
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.64 E-value=1.7e-15 Score=116.76 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=89.0
Q ss_pred HHHHHHHHHH---hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 6 DEAQFFSMLL---KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 6 ~~~~~l~~l~---~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
.+.+.+..++ .+.++.+|||||||.|..+.++++.. +++|+++.+|++..+.+++.+++.|+.+++++..+|..+
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 3444444544 45678899999999999999999986 589999999999999999999999999999999999865
Q ss_pred HHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWGG 135 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
+ ..+||.|+.-.. ++.+..+|+.+.++|+|||.++++.+....
T Consensus 124 ~----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 124 L----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp -------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred c----------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 4 348999986644 356799999999999999999988765543
No 41
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.63 E-value=2e-14 Score=105.92 Aligned_cols=105 Identities=26% Similarity=0.359 Sum_probs=87.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
....++||||||+|.++..++...| +.+++++|+++.+++.|++++...++ .+++++++|+.+.++...+ .+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~----~~~~ 88 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFP----DGSL 88 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCC----CCce
Confidence 3566999999999999999998876 68999999999999999999998888 5899999999876654321 3589
Q ss_pred eEEEEcCC---Cc-c-------cHHHHHHHHhcccCCeEEEE
Q 029836 98 DFVFVDAD---KD-N-------YVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 98 D~v~~d~~---~~-~-------~~~~~~~~~~~L~~gG~lv~ 128 (187)
|.|+++.+ .. . ...+++.+.+.|+|||.+++
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 99998742 11 1 25789999999999999986
No 42
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.63 E-value=1.2e-14 Score=119.74 Aligned_cols=123 Identities=17% Similarity=0.252 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
+.+...++..++...++.+|||+|||+|..+..+++.+++.++++++|+++.+++.++++++..|+. +++++++|+.+.
T Consensus 235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~ 313 (444)
T PRK14902 235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKV 313 (444)
T ss_pred EChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccc
Confidence 3455566666666667789999999999999999988754689999999999999999999999984 599999999765
Q ss_pred HHHHhhcccCCCceeEEEEcCCCcc-------------------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 84 LDQLIQDEKYHGTFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.+.+ .++||+|++|++... ...+++.+.++|||||.+++..+..
T Consensus 314 ~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 314 HEKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cchh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 4333 357999999975210 1357888899999999999765543
No 43
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.63 E-value=3.8e-14 Score=109.59 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=87.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC---CCceEEEeCCchHHHHHHhhcccC
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV---AHKIDFREGPALPLLDQLIQDEKY 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~l~~~~~~~~~ 93 (187)
..+|++||+||||.|..+..+++..+ ..+++++|+++++++.+++++...+. .++++++.+|+.+++...
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------ 142 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------ 142 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence 45678999999999999999887643 57899999999999999999876431 267899999998888754
Q ss_pred CCceeEEEEcCCC-----cc--cHHHHHHHHhcccCCeEEEEe
Q 029836 94 HGTFDFVFVDADK-----DN--YVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 94 ~~~~D~v~~d~~~-----~~--~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|++|... .. ..++++.+.++|+|||++++.
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 5789999999751 11 367889999999999999975
No 44
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.63 E-value=2.1e-14 Score=117.56 Aligned_cols=123 Identities=23% Similarity=0.306 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
+.....++..++...++.+|||+|||+|..+..++..+++.++|+++|+++.+++.+++++++.|+ .++++.++|+.++
T Consensus 222 Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-~~v~~~~~Da~~l 300 (431)
T PRK14903 222 QGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-SSIEIKIADAERL 300 (431)
T ss_pred ECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhhh
Confidence 344456666666677788999999999999999998876568999999999999999999999998 4699999998764
Q ss_pred HHHHhhcccCCCceeEEEEcCCCc-------------------------ccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 84 LDQLIQDEKYHGTFDFVFVDADKD-------------------------NYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.... .++||.|++|++.. ...+.++.+.++|+|||.+++..+..
T Consensus 301 ~~~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 301 TEYV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hhhh------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 3222 46899999997621 11445788889999999999876654
No 45
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.63 E-value=8.5e-15 Score=114.92 Aligned_cols=117 Identities=15% Similarity=0.216 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHh-h-c-C-CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836 4 SPDEAQFFSMLLK-L-I-N-AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP 79 (187)
Q Consensus 4 ~~~~~~~l~~l~~-~-~-~-~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d 79 (187)
.+++..++...+. . . . +.+|||+|||+|.+++.++...+ ..+++++|+++.+++.|++|++.+++.++++++++|
T Consensus 114 r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D 192 (307)
T PRK11805 114 RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD 192 (307)
T ss_pred CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence 4556666665543 2 1 2 36899999999999999998876 689999999999999999999999887789999999
Q ss_pred chHHHHHHhhcccCCCceeEEEEcCCC----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029836 80 ALPLLDQLIQDEKYHGTFDFVFVDADK----------------------------DNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~D~v~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+.++ .++||+|+++++. ..+..+++.+.+.|+|||.+++.
T Consensus 193 ~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 193 LFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred hhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 865443 3579999998641 01246678888999999999974
No 46
>PLN02244 tocopherol O-methyltransferase
Probab=99.62 E-value=9.4e-15 Score=116.39 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=89.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++.+|||||||+|.++..+++.+ +.+|+++|+++.+++.++++.+..+..+++++.++|+.+. + +. +++|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~-~~-----~~~F 187 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P-FE-----DGQF 187 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C-CC-----CCCc
Confidence 356799999999999999999875 4799999999999999999999888878899999998653 1 11 5789
Q ss_pred eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
|+|++... ..+...+++++.++|||||.+++.+...
T Consensus 188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99998644 3456789999999999999999876543
No 47
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.62 E-value=8e-15 Score=109.53 Aligned_cols=113 Identities=21% Similarity=0.330 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
++|.....+..++...+..+|||+|||+|+.+..+++.. .+++++|+++++++.+++++++.++ .++++.++|+.+
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~ 137 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWK 137 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCccc
Confidence 466666777777777778999999999999999877653 4899999999999999999999887 469999999865
Q ss_pred HHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 138 ~~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 138 GWPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP 174 (212)
T ss_pred CCCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence 4331 3689999998764443 45667899999999874
No 48
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=5.2e-15 Score=110.51 Aligned_cols=114 Identities=19% Similarity=0.308 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (187)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 84 (187)
|.-..++-..+...++.+|+|.|+|+|..+.+|+.++.+.++|+++|+.++.++.|++|++..++.+++++..+|..+..
T Consensus 80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 44445566667788999999999999999999999888789999999999999999999999999888999999987654
Q ss_pred HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
. .+.||.||+|.+ +.-++++.+...|+|||.+++
T Consensus 160 ~--------~~~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 160 D--------EEDVDAVFLDLP--DPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred c--------ccccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEE
Confidence 4 458999999974 446788899999999999986
No 49
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.61 E-value=5.3e-15 Score=109.70 Aligned_cols=113 Identities=19% Similarity=0.261 Sum_probs=91.7
Q ss_pred HHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836 9 QFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (187)
Q Consensus 9 ~~l~~l~~~---~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~ 85 (187)
.+++.-+.. ....+|||||||.|..+..+|+. +.+|+++|++++.++.|+....+.++ ++.+.+..+++...
T Consensus 46 ~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~ 120 (243)
T COG2227 46 DYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLAS 120 (243)
T ss_pred hhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHh
Confidence 344444443 46789999999999999999986 58999999999999999999998887 47777777766654
Q ss_pred HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 86 QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 86 ~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
. .++||+|++-.. .++...++..|.+++||||.++++.+..
T Consensus 121 ~-------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 121 A-------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred c-------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 2 479999998654 3456779999999999999999987753
No 50
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.61 E-value=1.1e-14 Score=107.63 Aligned_cols=101 Identities=16% Similarity=0.145 Sum_probs=82.0
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.++++.+..++ .++++...|..+.. + .+
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~--~------~~ 94 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLT--F------DG 94 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCC--c------CC
Confidence 3456789999999999999999975 57999999999999999999998877 56888888875431 1 35
Q ss_pred ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836 96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+||+|++... ......+++.+.++|+|||++++
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 7999987643 23457889999999999998654
No 51
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.61 E-value=1.3e-13 Score=105.55 Aligned_cols=143 Identities=20% Similarity=0.221 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836 6 DEAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (187)
Q Consensus 6 ~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 84 (187)
.+...+..+... .++++|||+|||+|..++.+++. + ..+++++|+++.+++.|+++++.+++..++.+..++
T Consensus 105 tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~----- 177 (250)
T PRK00517 105 TTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD----- 177 (250)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----
Confidence 344455555543 46789999999999998877654 3 357999999999999999999988775444443321
Q ss_pred HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHHh
Q 029836 85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALA 164 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (187)
.+||+|+++........++..+.+.|+|||++++.++... ....+.+.+.
T Consensus 178 ----------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~--------------------~~~~v~~~l~ 227 (250)
T PRK00517 178 ----------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGILEE--------------------QADEVLEAYE 227 (250)
T ss_pred ----------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHh--------------------hHHHHHHHHH
Confidence 2699999877656667788899999999999998765421 1233333444
Q ss_pred cCCCeeE-EEeecCCeeEEEEEc
Q 029836 165 VDPRIEI-CQISIADGVTLCRRI 186 (187)
Q Consensus 165 ~~~~~~~-~~~p~~~G~~i~~k~ 186 (187)
.. +|.. .....+++..+..++
T Consensus 228 ~~-Gf~~~~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 228 EA-GFTLDEVLERGEWVALVGKK 249 (250)
T ss_pred HC-CCEEEEEEEeCCEEEEEEEe
Confidence 33 4443 344567777777654
No 52
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.61 E-value=3.4e-14 Score=114.87 Aligned_cols=110 Identities=16% Similarity=0.293 Sum_probs=89.5
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchHHHHHHhhcccCC
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
...++++|||+|||+|.+++..+.. ...+|+++|+++.+++.|++|++.+++. .+++++++|+.++++.+... .
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~ 291 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---G 291 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---C
Confidence 3456889999999999998876643 2469999999999999999999999985 58999999999988765322 3
Q ss_pred CceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEEeC
Q 029836 95 GTFDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 95 ~~~D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
++||+|++|++. ..+..++..+.++|++||+++...
T Consensus 292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 589999999872 235566677889999999998643
No 53
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.61 E-value=3e-14 Score=117.34 Aligned_cols=119 Identities=20% Similarity=0.200 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (187)
Q Consensus 6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~ 85 (187)
....+...++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.++++++..|+ ++++++++|+.+..+
T Consensus 237 ~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~ 315 (445)
T PRK14904 237 PTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSP 315 (445)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCccccccc
Confidence 3444455555556678999999999999999998776567999999999999999999999998 579999999876532
Q ss_pred HHhhcccCCCceeEEEEcCCCc-------------------------ccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 86 QLIQDEKYHGTFDFVFVDADKD-------------------------NYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 86 ~~~~~~~~~~~~D~v~~d~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.++||.|++|++.. ....++..+.+.|+|||.+++..+..
T Consensus 316 --------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 316 --------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred --------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 45899999996521 01347888899999999999876543
No 54
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.61 E-value=1.6e-14 Score=106.55 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=81.2
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhccc
Q 029836 13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEK 92 (187)
Q Consensus 13 ~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~ 92 (187)
..+...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.++++.+..++ ++++...|.... + +
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~-~-~----- 91 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAA-A-L----- 91 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhc-c-c-----
Confidence 3344556889999999999999999974 57999999999999999998887776 367777776432 1 1
Q ss_pred CCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeC
Q 029836 93 YHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 93 ~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.++||+|+.... ......+++.+.+.|+|||++++-.
T Consensus 92 -~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 92 -NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred -cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 357999987543 2345788999999999999865543
No 55
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.60 E-value=1.1e-14 Score=112.64 Aligned_cols=112 Identities=21% Similarity=0.370 Sum_probs=91.1
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
...++.+|||+|||+|..+..++...+...+|+++|+++.+++.|+++....+. ++++++.+|..+. + +. ++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l-~-~~-----~~ 145 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEAL-P-VA-----DN 145 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhC-C-CC-----CC
Confidence 345678999999999999888887765567999999999999999999998887 5899999988653 2 10 46
Q ss_pred ceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836 96 TFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGG 135 (187)
Q Consensus 96 ~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
+||+|+.... ..+....++++.++|||||.+++.++...+
T Consensus 146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 146 SVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred ceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 8999997753 345678899999999999999998876543
No 56
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.60 E-value=7.6e-14 Score=107.55 Aligned_cols=118 Identities=15% Similarity=0.195 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ 86 (187)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~ 86 (187)
...+...++...++.+|||+|||+|..+..++..++..+.|+++|+++.+++.++++++..+. .++++++.|+..+..
T Consensus 59 ~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~- 136 (264)
T TIGR00446 59 SSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGA- 136 (264)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhh-
Confidence 334444455555678999999999999999998876557999999999999999999999988 579999999865422
Q ss_pred HhhcccCCCceeEEEEcCCCc-------------------------ccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 87 LIQDEKYHGTFDFVFVDADKD-------------------------NYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 87 ~~~~~~~~~~~D~v~~d~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
. .++||.|++|++.. ....+++.+.++|||||+|+...+.
T Consensus 137 ~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 137 A------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred h------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1 35699999997521 1235788888999999999976554
No 57
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.60 E-value=8.8e-14 Score=101.53 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcccccH--HHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGY--SLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP 79 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~--~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d 79 (187)
.+|...+||+.|++..+.+.++|+.|..|. +++.|+.+- ..+++++||.++++.+...++.+...++.+.++|+.++
T Consensus 25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 367899999999999999999999877553 345544332 34689999999999999999999998887778999998
Q ss_pred ch-HHHHHHhhcccCCCceeEEEEcCCCcccH-HHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHH
Q 029836 80 AL-PLLDQLIQDEKYHGTFDFVFVDADKDNYV-NYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQ 157 (187)
Q Consensus 80 ~~-~~l~~~~~~~~~~~~~D~v~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (187)
.. +.++.+ ...|++++|+..+++. .+|+. .++-+.|.+++..|....+. . -.
T Consensus 105 ~~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~-~~~~~~GaVVV~~Na~~r~~-----~-------------~~ 158 (218)
T PF07279_consen 105 APEEVMPGL-------KGIDFVVVDCKREDFAARVLRA-AKLSPRGAVVVCYNAFSRST-----N-------------GF 158 (218)
T ss_pred CHHHHHhhc-------cCCCEEEEeCCchhHHHHHHHH-hccCCCceEEEEeccccCCc-----C-------------Cc
Confidence 54 566664 5789999999988887 77765 44446777888888765321 0 01
Q ss_pred HHHHHHhcCCCeeEEEeecCCeeEEEE
Q 029836 158 ELNKALAVDPRIEICQISIADGVTLCR 184 (187)
Q Consensus 158 ~~~~~~~~~~~~~~~~~p~~~G~~i~~ 184 (187)
.+...+...+.+.+.+||+|.|+.+++
T Consensus 159 ~w~~~~~~~r~Vrsv~LPIG~GleVt~ 185 (218)
T PF07279_consen 159 SWRSVLRGRRVVRSVFLPIGKGLEVTR 185 (218)
T ss_pred cHHHhcCCCCceeEEEeccCCCeEEEE
Confidence 233445677889999999999999986
No 58
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.60 E-value=2.6e-14 Score=112.53 Aligned_cols=104 Identities=16% Similarity=0.098 Sum_probs=85.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
++.+|||||||+|..+..+++. +.+|+++|+++++++.|+++....+...+++++++++.+. +.. .++||
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~~------~~~FD 200 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-ADE------GRKFD 200 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-hhc------cCCCC
Confidence 4468999999999999988863 5799999999999999998877655556899999998654 221 56899
Q ss_pred EEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+|++... ..+...+++.+.++|||||.+++....
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9998654 345678999999999999999998653
No 59
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.60 E-value=2e-14 Score=109.81 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=86.1
Q ss_pred cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 18 INAKNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
.+..+|||+|||+|..+..+++.+ .++.+++++|+++.+++.|++++...+...+++++++|+.+.. .+.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 125 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN 125 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence 356799999999999999988743 2368999999999999999999998887778999999986542 235
Q ss_pred eeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 97 FDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 97 ~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+|+|++... ......+++++.+.|+|||.+++.+..
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 898886532 223467899999999999999987744
No 60
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.59 E-value=2.8e-14 Score=111.11 Aligned_cols=117 Identities=16% Similarity=0.288 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHhh---cCC-CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836 4 SPDEAQFFSMLLKL---INA-KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP 79 (187)
Q Consensus 4 ~~~~~~~l~~l~~~---~~~-~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d 79 (187)
.|++..++...... .++ .+|||+|||+|..++.++...+ +.+++++|+++.+++.|++|++.+++..+++++++|
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 35566666665532 223 6999999999999999998876 689999999999999999999999886679999999
Q ss_pred chHHHHHHhhcccCCCceeEEEEcCCC--c--------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029836 80 ALPLLDQLIQDEKYHGTFDFVFVDADK--D--------------------------NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~D~v~~d~~~--~--------------------------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+.++ ..+||+|+.+++. . .+..++..+.+.|+|||++++.
T Consensus 174 ~~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 174 LFEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred hhccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 865432 3479999998641 0 2345677788899999999874
No 61
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.59 E-value=4.3e-14 Score=107.45 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=86.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
+..+|||+|||+|..+..+++.++ ++.+++++|+++.+++.|+++++..+...+++++++|+.+.. ...+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 123 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKNA 123 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCCC
Confidence 557999999999999999988653 368999999999999999999988776668999999997542 2357
Q ss_pred eEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 98 DFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 98 D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
|+|++... ..+...+++.+.+.|+|||.+++.+...
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 88876543 1234678999999999999999987644
No 62
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.59 E-value=5.6e-14 Score=109.08 Aligned_cols=147 Identities=22% Similarity=0.284 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 5 PDEAQFFSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 5 ~~~~~~l~~l~~~~-~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
+.+.--|+.|.... ++++|||+|||+|..++..++. + ..+|+++|++|.+++.|++|.+.+++..++.+.. ..+.
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~ 221 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDL 221 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCT
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--eccc
Confidence 44555566666554 4689999999999999987764 3 4789999999999999999999999988776631 1111
Q ss_pred HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHH
Q 029836 84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKAL 163 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (187)
. .++||+|+++....-.......+.++|+|||+++++.++.. ....+.+.+
T Consensus 222 ~---------~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~--------------------~~~~v~~a~ 272 (295)
T PF06325_consen 222 V---------EGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEE--------------------QEDEVIEAY 272 (295)
T ss_dssp C---------CS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGG--------------------GHHHHHHHH
T ss_pred c---------cccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHH--------------------HHHHHHHHH
Confidence 1 46899999988766667777888899999999999887642 123344444
Q ss_pred hcCCCeeEE-EeecCCeeEEEEEc
Q 029836 164 AVDPRIEIC-QISIADGVTLCRRI 186 (187)
Q Consensus 164 ~~~~~~~~~-~~p~~~G~~i~~k~ 186 (187)
. . ++... ...-+++.+++-||
T Consensus 273 ~-~-g~~~~~~~~~~~W~~l~~~K 294 (295)
T PF06325_consen 273 K-Q-GFELVEEREEGEWVALVFKK 294 (295)
T ss_dssp H-T-TEEEEEEEEETTEEEEEEEE
T ss_pred H-C-CCEEEEEEEECCEEEEEEEe
Confidence 3 3 66554 34578888887765
No 63
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.59 E-value=1.1e-14 Score=109.60 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=87.5
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV 100 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v 100 (187)
++|||||||+|..+..+++.++ +.+++++|+++++++.++++++..++.+++++..+|..+. + . .++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEe
Confidence 4799999999999999998875 5899999999999999999999999888999999988543 1 1 3589999
Q ss_pred EEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 101 FVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 101 ~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+.... ..+...+++.+.++|+|||.+++.+..
T Consensus 72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 97542 345678999999999999999998764
No 64
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.59 E-value=9.2e-14 Score=113.90 Aligned_cols=122 Identities=22% Similarity=0.228 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
+.....++..++...++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..|. +++++++|+.+.
T Consensus 229 Qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~ 305 (427)
T PRK10901 229 QDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDP 305 (427)
T ss_pred ECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccc
Confidence 334455555566666788999999999999999998765 48999999999999999999999887 368899998754
Q ss_pred HHHHhhcccCCCceeEEEEcCCCcc-------------------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 84 LDQLIQDEKYHGTFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
..... .++||.|++|++... ...+++.+.++|+|||.+++..+..
T Consensus 306 ~~~~~-----~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 306 AQWWD-----GQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred hhhcc-----cCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 32211 357999999975210 1357888889999999999876543
No 65
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.59 E-value=7.4e-15 Score=106.85 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=86.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
..++.+|+|+|||.|.+|..+++..| ++.++++|.|++|++.|++.+ ++++|..+|..++-+ ...
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p--------~~~ 92 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP--------EQP 92 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------CCc
Confidence 44678999999999999999999998 799999999999999997765 789999999987765 468
Q ss_pred eeEEEEcCC---CcccHHHHHHHHhcccCCeEEEE
Q 029836 97 FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 97 ~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.|++|.++. -.++...|..+...|.|||+|.+
T Consensus 93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEE
Confidence 899999875 67888999999999999999986
No 66
>PLN02823 spermine synthase
Probab=99.58 E-value=1.4e-13 Score=108.77 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=87.6
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC---CCCceEEEeCCchHHHHHHhhccc
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG---VAHKIDFREGPALPLLDQLIQDEK 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~l~~~~~~~~ 92 (187)
...+|++||.||+|.|..+.++++..+ ..++++||++++.++.+++++...+ ..++++++.+|+..++...
T Consensus 100 ~~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~----- 173 (336)
T PLN02823 100 HHPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR----- 173 (336)
T ss_pred hCCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-----
Confidence 345789999999999999999988643 5789999999999999999987542 2479999999999988653
Q ss_pred CCCceeEEEEcCCCc---------ccHHHHH-HHHhcccCCeEEEEe
Q 029836 93 YHGTFDFVFVDADKD---------NYVNYHK-RLIELVKVGGVIGYD 129 (187)
Q Consensus 93 ~~~~~D~v~~d~~~~---------~~~~~~~-~~~~~L~~gG~lv~~ 129 (187)
.++||+|++|.... ...++++ .+.+.|+|||++++.
T Consensus 174 -~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 174 -DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred -CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 57899999995311 1357887 899999999999864
No 67
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=2e-14 Score=110.41 Aligned_cols=97 Identities=19% Similarity=0.298 Sum_probs=81.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++.+|||||||+|.++..+++..+ +.+++++|+++.+++.+++++ ++++++.+|+.++.+ .++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~~f 94 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQAL 94 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CCCc
Confidence 4568999999999999999998875 689999999999999998764 468899999865432 4589
Q ss_pred eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEe
Q 029836 98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+|++... ..+...+++.+.+.|+|||.+++.
T Consensus 95 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 95 DLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred cEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99998765 345678999999999999999885
No 68
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.58 E-value=1.4e-13 Score=101.53 Aligned_cols=112 Identities=14% Similarity=0.117 Sum_probs=86.0
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836 10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ 89 (187)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~ 89 (187)
++..+....+..++||+|||+|.+++.++... ..+|+++|.++++++.+++|++.+++ .+++++++|..+.++..
T Consensus 44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~-- 118 (199)
T PRK10909 44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQP-- 118 (199)
T ss_pred HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhc--
Confidence 44445444567899999999999999755442 46999999999999999999999987 58999999998776532
Q ss_pred cccCCCceeEEEEcCC-Ccc-cHHHHHHHHh--cccCCeEEEEeC
Q 029836 90 DEKYHGTFDFVFVDAD-KDN-YVNYHKRLIE--LVKVGGVIGYDN 130 (187)
Q Consensus 90 ~~~~~~~~D~v~~d~~-~~~-~~~~~~~~~~--~L~~gG~lv~~~ 130 (187)
.++||+||+|++ ... ....++.+.. +|++++++++..
T Consensus 119 ----~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 119 ----GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred ----CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 357999999998 333 3444555543 478999988753
No 69
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.58 E-value=1.3e-13 Score=113.03 Aligned_cols=123 Identities=18% Similarity=0.249 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (187)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 84 (187)
.....++..++...++.+|||+|||+|..+..+++.++ .++++++|+++++++.+++++++.|+..++++..+|.....
T Consensus 224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302 (426)
T ss_pred CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 34455666666666788999999999999999998876 68999999999999999999999988534445667664321
Q ss_pred HHHhhcccCCCceeEEEEcCCCc---------c----------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 85 DQLIQDEKYHGTFDFVFVDADKD---------N----------------YVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.... .++||.|++|++.. + ...+++.++++|||||.+++..+..
T Consensus 303 ~~~~-----~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 303 QWAE-----NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccc-----ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1100 46899999996511 1 2468888899999999999877654
No 70
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.58 E-value=1.2e-14 Score=96.01 Aligned_cols=93 Identities=24% Similarity=0.372 Sum_probs=74.3
Q ss_pred EEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836 23 TMEIGVFTGYSLLATALAIPD--DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV 100 (187)
Q Consensus 23 vLeiG~g~G~~~~~l~~~~~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v 100 (187)
|||+|||+|..+..+++.++. ..+++++|+++++++.++++.+..+. +++++++|+.++ +.. .++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CCCeeEE
Confidence 799999999999999988732 37999999999999999999988665 899999999774 433 6799999
Q ss_pred EEc-CC-----CcccHHHHHHHHhcccCCe
Q 029836 101 FVD-AD-----KDNYVNYHKRLIELVKVGG 124 (187)
Q Consensus 101 ~~d-~~-----~~~~~~~~~~~~~~L~~gG 124 (187)
++- .. ++....+++.+.++|+|||
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 993 31 3456789999999999998
No 71
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.57 E-value=5.2e-14 Score=112.67 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=99.3
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchHHHHHHh
Q 029836 10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLI 88 (187)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~ 88 (187)
.-..+....++++||++-|++|..++..+..- ..+||+||.|...++.|++|++-+|+. .+++++++|+.+++....
T Consensus 208 ~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~ 285 (393)
T COG1092 208 NRRALGELAAGKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAE 285 (393)
T ss_pred HHHHHhhhccCCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHH
Confidence 33445555668999999999999999988652 359999999999999999999999985 668999999999998875
Q ss_pred hcccCCCceeEEEEcCC------------CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 89 QDEKYHGTFDFVFVDAD------------KDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 89 ~~~~~~~~~D~v~~d~~------------~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.. ..+||+|++|++ ..+|...+..+.++|+|||.+++.++..
T Consensus 286 ~~---g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 286 RR---GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred hc---CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 43 459999999987 2356778888899999999999876654
No 72
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.57 E-value=2.3e-14 Score=109.94 Aligned_cols=95 Identities=20% Similarity=0.177 Sum_probs=79.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.|++ .++++.++|+.++.+ .++|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~--------~~~~~~~~d~~~~~~--------~~~f 90 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARE--------RGVDARTGDVRDWKP--------KPDT 90 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHh--------cCCcEEEcChhhCCC--------CCCc
Confidence 4568999999999999999998875 6899999999999998865 257889999865432 4689
Q ss_pred eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEe
Q 029836 98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+|++... ..+...++..+.+.|||||.+++.
T Consensus 91 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 91 DVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred eEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 99998764 345678899999999999999885
No 73
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.57 E-value=3.1e-14 Score=114.05 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=83.1
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC--CceEEEeCCchHHHHHHhhcccCCCce
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--HKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
..+|||+|||+|.+++.+++..| ..+|+++|.++.+++.+++|++.++.. .+++++.+|..+.++ .++|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~~f 299 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRF 299 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CCCE
Confidence 46999999999999999998876 689999999999999999999887643 378999888764332 4589
Q ss_pred eEEEEcCC-Cc-------ccHHHHHHHHhcccCCeEEEEe
Q 029836 98 DFVFVDAD-KD-------NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 98 D~v~~d~~-~~-------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+|+++++ +. ....+|..+.+.|+|||.+++.
T Consensus 300 DlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 300 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 99999876 21 1246788889999999998874
No 74
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.57 E-value=6.9e-14 Score=120.76 Aligned_cols=110 Identities=18% Similarity=0.318 Sum_probs=92.1
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchHHHHHHhhccc
Q 029836 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQDEK 92 (187)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~ 92 (187)
+....++++|||+|||+|.++++++.. + ..+|++||+++.+++.|++|++.+++. .+++++++|..+++...
T Consensus 533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~----- 605 (702)
T PRK11783 533 IGQMAKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA----- 605 (702)
T ss_pred HHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence 444557899999999999999999975 2 357999999999999999999999986 58999999999887654
Q ss_pred CCCceeEEEEcCCC--------------cccHHHHHHHHhcccCCeEEEEeCc
Q 029836 93 YHGTFDFVFVDADK--------------DNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 93 ~~~~~D~v~~d~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.++||+|++|++. ..+..++..+.++|+|||++++...
T Consensus 606 -~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 606 -REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred -CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4689999999862 1245677888899999999987643
No 75
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.57 E-value=9.9e-14 Score=105.95 Aligned_cols=115 Identities=22% Similarity=0.331 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 5 PDEAQFFSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 5 ~~~~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+++..++..++... ++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...+. .+++++++|..+
T Consensus 71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~ 148 (251)
T TIGR03534 71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFE 148 (251)
T ss_pred CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhc
Confidence 45556666665544 345999999999999999998876 67999999999999999999998887 479999999876
Q ss_pred HHHHHhhcccCCCceeEEEEcCCCc-----------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDADKD-----------------------------NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++ .++||+|+++++.. .+..+++.+.+.|++||.+++.
T Consensus 149 ~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 149 PLP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred cCc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 432 46899999976411 0235678888999999999974
No 76
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.57 E-value=1.2e-14 Score=94.43 Aligned_cols=92 Identities=24% Similarity=0.344 Sum_probs=74.2
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEc
Q 029836 24 MEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVD 103 (187)
Q Consensus 24 LeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d 103 (187)
||+|||+|..+..+++. + ..+++++|+++++++.++++... .++.+.++|..++ +-. +++||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~~~------~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDL-PFP------DNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSS-SS-------TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhC-ccc------cccccccccc
Confidence 89999999999999987 3 78999999999999999987765 3556888988765 211 6799999987
Q ss_pred CC---CcccHHHHHHHHhcccCCeEEEE
Q 029836 104 AD---KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 104 ~~---~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.. .++...+++++.+.|||||++++
T Consensus 68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 64 35678899999999999999985
No 77
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.56 E-value=1.1e-13 Score=108.04 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836 6 DEAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (187)
Q Consensus 6 ~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 84 (187)
.+...+..+... .++++|||+|||+|..+..+++. + ..+++++|+++.+++.+++++..+++..++.+..++....
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~- 221 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP- 221 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-
Confidence 333334444332 35689999999999999887764 3 4699999999999999999999998877777777663211
Q ss_pred HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
. .++||+|+++........++..+.+.|+|||++++..+.
T Consensus 222 --~------~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 222 --I------EGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred --c------CCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 1 468999999876666678889999999999999987654
No 78
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.56 E-value=6.2e-14 Score=106.14 Aligned_cols=116 Identities=21% Similarity=0.302 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH-H
Q 029836 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP-L 83 (187)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~ 83 (187)
|.-..++-..+...++.+|||.|+|+|..+.+++..+.+.++|+..|..++.++.|+++++..++..++++.+.|..+ -
T Consensus 26 pkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 26 PKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred CchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 444556666677889999999999999999999998877899999999999999999999999998899999999863 2
Q ss_pred HH-HHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcc-cCCeEEEE
Q 029836 84 LD-QLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELV-KVGGVIGY 128 (187)
Q Consensus 84 l~-~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L-~~gG~lv~ 128 (187)
++ .+ +..+|.||+|.+ +.-..+..+.+.| ++||.+++
T Consensus 106 ~~~~~------~~~~DavfLDlp--~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 106 FDEEL------ESDFDAVFLDLP--DPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp -STT-------TTSEEEEEEESS--SGGGGHHHHHHHE-EEEEEEEE
T ss_pred ccccc------cCcccEEEEeCC--CHHHHHHHHHHHHhcCCceEEE
Confidence 21 11 468999999975 2234466777788 89999985
No 79
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.56 E-value=1.2e-13 Score=108.75 Aligned_cols=114 Identities=18% Similarity=0.315 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (187)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 84 (187)
|.....+...+...+..+|||||||+|..+..+++..+..++|+++|+++++++.|+++++..+. +++.++++|+.+..
T Consensus 66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~ 144 (322)
T PRK13943 66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcc
Confidence 33333333334455678999999999999999998775446899999999999999999999887 67999999986554
Q ss_pred HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+. ..+||+|+++..... ..+.+.+.|++||.+++.
T Consensus 145 ~~-------~~~fD~Ii~~~g~~~---ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 145 PE-------FAPYDVIFVTVGVDE---VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred cc-------cCCccEEEECCchHH---hHHHHHHhcCCCCEEEEE
Confidence 32 357999999865333 234567789999998773
No 80
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.56 E-value=3.1e-13 Score=104.27 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=91.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC--C-CCceEEEeCCchHHHHHHhhcccC
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--V-AHKIDFREGPALPLLDQLIQDEKY 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~ 93 (187)
+.++++||.||.|.|..+.++++..+ -.+++.||+++..++.+++.+.... . .+|++++.+|+.++++..
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------ 146 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------ 146 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------
Confidence 45568999999999999999999865 6899999999999999999998764 2 389999999999999876
Q ss_pred CCceeEEEEcCC-Cc------ccHHHHHHHHhcccCCeEEEEe
Q 029836 94 HGTFDFVFVDAD-KD------NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 94 ~~~~D~v~~d~~-~~------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|++|.. +. ...+|++.|.+.|+++|+++..
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 458999999975 21 2478999999999999999975
No 81
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.55 E-value=8.6e-14 Score=115.97 Aligned_cols=101 Identities=19% Similarity=0.290 Sum_probs=82.9
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~ 99 (187)
+.+|||+|||+|.+++.++..++ +.+++++|+++.+++.|++|+..+++.++++++++|..+.++ .++||+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl 209 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF 209 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence 46899999999999999998876 689999999999999999999998887789999999765432 358999
Q ss_pred EEEcCCC-----------------------------cccHHHHHHHHhcccCCeEEEEe
Q 029836 100 VFVDADK-----------------------------DNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 100 v~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+++++. ..+..+++.+.+.|+|||.+++.
T Consensus 210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 9997640 01234556677899999999874
No 82
>PRK04266 fibrillarin; Provisional
Probab=99.55 E-value=8.5e-14 Score=104.66 Aligned_cols=105 Identities=11% Similarity=0.131 Sum_probs=82.1
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH--HHHhhccc
Q 029836 15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL--DQLIQDEK 92 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l--~~~~~~~~ 92 (187)
+...+..+|||+|||+|.++..+++..+ .++|+++|+++++++.+.++.+.. +++.++.+|+.+.. ..+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l----- 138 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV----- 138 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-----
Confidence 4445678999999999999999999876 689999999999999887776543 57899999986421 112
Q ss_pred CCCceeEEEEcCCCc-ccHHHHHHHHhcccCCeEEEEe
Q 029836 93 YHGTFDFVFVDADKD-NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 93 ~~~~~D~v~~d~~~~-~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++||+|+.+.... ....+++.+.+.|||||.+++.
T Consensus 139 -~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 139 -VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 35699999886522 2344678999999999999984
No 83
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.54 E-value=2.2e-13 Score=99.19 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=85.9
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (187)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~ 88 (187)
.+|...+...++++|||+|||+|.++..++... .+++++|+++.+++.++++++..+. ++++..+|..+..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---- 79 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---- 79 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence 455555566778899999999999999988753 3899999999999999999988775 5888888876532
Q ss_pred hcccCCCceeEEEEcCCCc------------------------ccHHHHHHHHhcccCCeEEEEeC
Q 029836 89 QDEKYHGTFDFVFVDADKD------------------------NYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 89 ~~~~~~~~~D~v~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.++||+|+.+.+.. .+..+++.+.++|+|||.+++..
T Consensus 80 -----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 -----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred -----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 35899999886410 03567888899999999988743
No 84
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.53 E-value=6.6e-13 Score=97.36 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=89.2
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836 10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ 89 (187)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~ 89 (187)
++..+....+..++||++||+|..+++++... ..+|+++|.++.+++.+++|++.++...+++++.+|..+.+..+..
T Consensus 40 ~f~~l~~~~~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~ 117 (189)
T TIGR00095 40 FFNILRPEIQGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK 117 (189)
T ss_pred HHHHHHHhcCCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc
Confidence 33333334568899999999999999998763 3589999999999999999999999877899999999887765421
Q ss_pred cccCCCceeEEEEcCCC--cccHHHHHHHH--hcccCCeEEEEe
Q 029836 90 DEKYHGTFDFVFVDADK--DNYVNYHKRLI--ELVKVGGVIGYD 129 (187)
Q Consensus 90 ~~~~~~~~D~v~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~ 129 (187)
. ...+|+||.|++. ..+...++.+. .+|+++|++++.
T Consensus 118 ~---~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 118 K---PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred c---CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 1 2248999999973 33455565554 479999999975
No 85
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=1.6e-13 Score=107.04 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=81.6
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.++++.+..++ ++++...|..+.. + .+
T Consensus 117 ~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~------~~ 183 (287)
T PRK12335 117 QTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I------QE 183 (287)
T ss_pred hccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c------cC
Confidence 3456789999999999999999874 57999999999999999999988877 6888887775421 1 46
Q ss_pred ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836 96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+||+|++... .+....+++.+.+.|+|||++++
T Consensus 184 ~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 184 EYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred CccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 8999987643 24567889999999999999655
No 86
>PRK08317 hypothetical protein; Provisional
Probab=99.53 E-value=3.2e-13 Score=102.06 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=92.7
Q ss_pred HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836 8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL 87 (187)
Q Consensus 8 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~ 87 (187)
...+...+...++.+|||+|||+|.++..++..+++.++++++|+++.+++.++++.. ....++++..+|..+.. +
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~--~ 83 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP--F 83 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC--C
Confidence 3444445556677899999999999999999887446899999999999999988733 23367899998875431 1
Q ss_pred hhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCcc
Q 029836 88 IQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS 136 (187)
Q Consensus 88 ~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~ 136 (187)
. .++||+|+.... ..+...+++.+.++|+|||.+++.+..+...
T Consensus 84 ~-----~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 130 (241)
T PRK08317 84 P-----DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTL 130 (241)
T ss_pred C-----CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCce
Confidence 1 468999998754 3456789999999999999999987665443
No 87
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.53 E-value=3.9e-13 Score=102.78 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836 5 PDEAQFFSMLLKLI----NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (187)
Q Consensus 5 ~~~~~~l~~l~~~~----~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~ 80 (187)
+++..++....... .+.++||+|||+|..++.++...+ +.+++++|+++.+++.|++|++.++ .+++++|.
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~ 142 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDL 142 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeec
Confidence 34555555554432 235899999999999999998765 5799999999999999999998765 47888998
Q ss_pred hHHHHHHhhcccCCCceeEEEEcCCCcc-----------------------------cHHHHHHHHhcccCCeEEEEe
Q 029836 81 LPLLDQLIQDEKYHGTFDFVFVDADKDN-----------------------------YVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~-----------------------------~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+.++... .++||+|++|++... +..+++.+.++|++||.+++.
T Consensus 143 ~~~l~~~~-----~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 143 YDALPTAL-----RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhhcchhc-----CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 76554321 357999999975110 235666777999999999864
No 88
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.52 E-value=3.6e-13 Score=98.13 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=90.7
Q ss_pred HHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836 7 EAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (187)
Q Consensus 7 ~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~ 85 (187)
...+++.|-.. ....++||+-||+|..+++.++.. ..+|+.||.++..+...++|++..+..++++++.+|+...+.
T Consensus 29 realFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~ 106 (183)
T PF03602_consen 29 REALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLL 106 (183)
T ss_dssp HHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHH
T ss_pred HHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHH
Confidence 34555566556 788999999999999999987652 479999999999999999999999998889999999988887
Q ss_pred HHhhcccCCCceeEEEEcCCC--cc-cHHHHHHHH--hcccCCeEEEEeC
Q 029836 86 QLIQDEKYHGTFDFVFVDADK--DN-YVNYHKRLI--ELVKVGGVIGYDN 130 (187)
Q Consensus 86 ~~~~~~~~~~~~D~v~~d~~~--~~-~~~~~~~~~--~~L~~gG~lv~~~ 130 (187)
+.... ..+||+||+|++. .. +...++.+. .+|+++|++++..
T Consensus 107 ~~~~~---~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 107 KLAKK---GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHHC---TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred hhccc---CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 66332 5799999999983 33 366777776 7999999999743
No 89
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.52 E-value=8.6e-14 Score=107.20 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=84.1
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
...+..+|||||||+|..+..++... +.+|+++|+++.+++.++++... .+++.+..+|+.+. + +. ++
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~-~~-----~~ 116 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-D-FP-----EN 116 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-C-CC-----CC
Confidence 34567899999999999999988754 47999999999999999987654 35799999988642 1 10 46
Q ss_pred ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+||+|++... ..+...+++.+.++|||||.+++.+...
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 8999998432 2366789999999999999999987654
No 90
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.52 E-value=2.8e-13 Score=98.77 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
++...++++. +...++.++||+|||.|..+++|++. +..|+++|.++..++.+++..++.++ .++....|..+.
T Consensus 16 ~~~hs~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~ 89 (192)
T PF03848_consen 16 TPTHSEVLEA-VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDF 89 (192)
T ss_dssp ----HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCB
T ss_pred CCCcHHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhc
Confidence 3444455543 46678899999999999999999986 68999999999999999988888777 388888887654
Q ss_pred HHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 84 LDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.. .+.||+|+.... ++..+..++.+...++|||++++...
T Consensus 90 ~~--------~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 90 DF--------PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp S---------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cc--------cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 22 468999986422 55667889999999999999887443
No 91
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.8e-13 Score=104.99 Aligned_cols=115 Identities=21% Similarity=0.384 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHH-hhcC-CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836 4 SPDEAQFFSMLL-KLIN-AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81 (187)
Q Consensus 4 ~~~~~~~l~~l~-~~~~-~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 81 (187)
.+++..++..+. .... +.+|||+|||+|..++.++...+ ..+|+++|+|+.+++.|++|...+++ .++.++++|..
T Consensus 93 r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf 170 (280)
T COG2890 93 RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLF 170 (280)
T ss_pred CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecc
Confidence 467777777754 1222 22799999999999999999877 68999999999999999999999998 67777777554
Q ss_pred HHHHHHhhcccCCCceeEEEEcCC--C-c-------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDAD--K-D-------------------------NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~--~-~-------------------------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+ .++||+|+.+++ + + .+..++..+...|++||++++.
T Consensus 171 ---~~~------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 171 ---EPL------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred ---ccc------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 333 458999999876 1 1 1245666777899999999874
No 92
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.51 E-value=2.7e-13 Score=109.11 Aligned_cols=116 Identities=16% Similarity=0.262 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~-~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
.|++..++..+.... +..++||+|||+|..++.++...+ +.+++++|+|+++++.|++|++..+. +++++++|..+
T Consensus 235 RpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e 311 (423)
T PRK14966 235 RPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFD 311 (423)
T ss_pred CccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhc
Confidence 567778888776543 457999999999999999988765 68999999999999999999998764 79999999865
Q ss_pred HHHHHhhcccCCCceeEEEEcCCC--c--------------------------ccHHHHHHHHhcccCCeEEEE
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDADK--D--------------------------NYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~~--~--------------------------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..... .++||+|+++++. . .+..+++.+.+.|+|||.+++
T Consensus 312 ~~l~~------~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 312 TDMPS------EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred ccccc------CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 31111 3579999998761 0 123455666689999999876
No 93
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.51 E-value=3.8e-13 Score=103.86 Aligned_cols=111 Identities=22% Similarity=0.356 Sum_probs=86.7
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC-CceEEEeCCchHHHHHHhhccc
Q 029836 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQDEK 92 (187)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~ 92 (187)
+....+.++||++-|++|.+++..+..- ..+|++||.|..+++.+++|++.+++. .+++++++|..+++..+..
T Consensus 118 v~~~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~--- 192 (286)
T PF10672_consen 118 VRKYAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK--- 192 (286)
T ss_dssp HHHHCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH---
T ss_pred HHHHcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc---
Confidence 3445678999999999999999877642 368999999999999999999999986 6899999999998877543
Q ss_pred CCCceeEEEEcCC---------CcccHHHHHHHHhcccCCeEEEEeC
Q 029836 93 YHGTFDFVFVDAD---------KDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 93 ~~~~~D~v~~d~~---------~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.++||+|++|++ ..+|...+..+.++|+|||+|++..
T Consensus 193 -~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 193 -GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp -TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 469999999987 2356778888899999999987643
No 94
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.51 E-value=3.1e-13 Score=106.81 Aligned_cols=108 Identities=15% Similarity=0.185 Sum_probs=82.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++++|||||||+|+.+..++...+ .+|+++|+++.++..++..-+..+...++++..++..+. +. .++|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~F 190 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAF 190 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCc
Confidence 4678999999999999999988643 579999999988876544333333345899999988654 21 3589
Q ss_pred eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836 98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGG 135 (187)
Q Consensus 98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
|+|++-+. ..+...+++.+.+.|+|||.++++.....+
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~ 231 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG 231 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence 99998654 355678999999999999999998655443
No 95
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.51 E-value=5.1e-13 Score=101.78 Aligned_cols=108 Identities=16% Similarity=0.101 Sum_probs=87.5
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC---CCceEEEeCCchHHHHHHhhccc
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV---AHKIDFREGPALPLLDQLIQDEK 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~l~~~~~~~~ 92 (187)
...++++||-||.|.|..+.++++.. +..+++.||+++..++.+++.+..... .+|++++.+|+..++.+.
T Consensus 73 ~~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~----- 146 (246)
T PF01564_consen 73 LHPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET----- 146 (246)
T ss_dssp HSSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----
T ss_pred cCCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----
Confidence 34579999999999999999998763 357999999999999999999886432 379999999999998876
Q ss_pred CCC-ceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEeC
Q 029836 93 YHG-TFDFVFVDADK-------DNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 93 ~~~-~~D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.+ +||+|++|... -...++++.+.+.|+|||+++...
T Consensus 147 -~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 147 -QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp -SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 45 89999999752 124789999999999999999753
No 96
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.51 E-value=4.8e-13 Score=106.98 Aligned_cols=103 Identities=22% Similarity=0.294 Sum_probs=86.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
....+||||||+|..+..+|...| +..++|+|+++.+++.+.+++...++ .++.++++|+..++..+. ++++|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~-----~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLP-----SNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCC-----CCcee
Confidence 346899999999999999999876 78999999999999999999999888 679999999977654442 57899
Q ss_pred EEEEcCC----Ccc-----cHHHHHHHHhcccCCeEEEE
Q 029836 99 FVFVDAD----KDN-----YVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 99 ~v~~d~~----~~~-----~~~~~~~~~~~L~~gG~lv~ 128 (187)
.|++..+ +.. ...+++.+.+.|++||.+.+
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 9987532 111 26789999999999999876
No 97
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.51 E-value=3.3e-13 Score=106.21 Aligned_cols=109 Identities=15% Similarity=0.045 Sum_probs=89.0
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
...+..++||||||+|..+..+++..| +.+++++|. +.+++.+++++++.++.++++++.+|+.+.. .+
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~---------~~ 214 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES---------YP 214 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC---------CC
Confidence 344668999999999999999999987 689999998 7899999999999999889999999986421 12
Q ss_pred ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836 96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWGG 135 (187)
Q Consensus 96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
.+|+|++... .+.....++++.+.|+|||.+++.|..+..
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 259 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 4698876542 233457899999999999999998876643
No 98
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.51 E-value=1e-12 Score=103.82 Aligned_cols=101 Identities=10% Similarity=0.058 Sum_probs=81.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..++.+++. +.+|+++|.++.+++.|+++++.+++ ++++++++|+.++.... .++|
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~ 241 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVP 241 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCC
Confidence 35789999999999999999974 47999999999999999999999998 68999999998765432 3579
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+|++|+++......+......+++++++.+
T Consensus 242 D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 242 DLVLVNPPRRGIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred eEEEECCCCCCccHHHHHHHHHcCCCeEEEE
Confidence 9999999866544334334445678777765
No 99
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.50 E-value=4.8e-13 Score=101.27 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=87.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||.|..+..++..++...+++++|+++.+++.+++++...+...++.++.+|+.+... ..++|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~ 122 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-------PDNSF 122 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-------CCCCc
Confidence 34679999999999999999988754589999999999999999998876666789999998865421 14689
Q ss_pred eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
|+|++... ..+....++.+.+.|++||.+++.+.
T Consensus 123 D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 123 DAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 99987643 34577889999999999999987654
No 100
>PRK14968 putative methyltransferase; Provisional
Probab=99.50 E-value=8.3e-13 Score=96.53 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=84.6
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCc-eEEEeCCchHHHHHHhh
Q 029836 11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK-IDFREGPALPLLDQLIQ 89 (187)
Q Consensus 11 l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~l~~~~~ 89 (187)
+...+...+.+++||+|||+|.++..++.. +.+++++|.++++++.++++++..+..++ +.++++|..+.+.
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---- 87 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR---- 87 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc----
Confidence 333344467789999999999999999876 57999999999999999999998887543 8889988765432
Q ss_pred cccCCCceeEEEEcCCCc------------------------ccHHHHHHHHhcccCCeEEEEe
Q 029836 90 DEKYHGTFDFVFVDADKD------------------------NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 90 ~~~~~~~~D~v~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+||+|+.+++.. ....+++.+.+.|+|||.+++.
T Consensus 88 ----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 88 ----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred ----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 34799999875411 1345788999999999988763
No 101
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.50 E-value=4.4e-13 Score=103.84 Aligned_cols=114 Identities=23% Similarity=0.364 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836 5 PDEAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81 (187)
Q Consensus 5 ~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 81 (187)
+++..++..+.. ..++.+|||+|||+|..+..++..++ ..+++++|+++.+++.+++++. .....+++++++|..
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~ 168 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWF 168 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcccc
Confidence 445555665542 34567999999999999999998876 6899999999999999999998 334468999999885
Q ss_pred HHHHHHhhcccCCCceeEEEEcCCC-----------------------------cccHHHHHHHHhcccCCeEEEE
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDADK-----------------------------DNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+.++ .++||+|+.+++. ..+..+++.+.++|++||++++
T Consensus 169 ~~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 169 EPLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred CcCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 4332 3689999987541 1124566777799999999997
No 102
>PRK14967 putative methyltransferase; Provisional
Probab=99.50 E-value=8.6e-13 Score=99.33 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=79.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.+..+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++...+. +++++++|..+.++ .++|
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~f 102 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRPF 102 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCCe
Confidence 34579999999999999998875 3 35999999999999999999988775 58888888865432 4689
Q ss_pred eEEEEcCCCc------------------------ccHHHHHHHHhcccCCeEEEE
Q 029836 98 DFVFVDADKD------------------------NYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 98 D~v~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+|+++++.. .+..+++.+.++|++||.+++
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9999985411 034567788899999999986
No 103
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.50 E-value=7.2e-15 Score=96.72 Aligned_cols=96 Identities=23% Similarity=0.324 Sum_probs=62.9
Q ss_pred EEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEc
Q 029836 24 MEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVD 103 (187)
Q Consensus 24 LeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d 103 (187)
||||||+|..+..++..++ ..+++++|+|+.+++.+++++...... +......+..+...... .++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDP-----PESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC---------SEEEEE
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhccc-----ccccceehhh
Confidence 7999999999999999885 799999999999999999999887652 33333333333222110 2489999987
Q ss_pred CC---CcccHHHHHHHHhcccCCeEE
Q 029836 104 AD---KDNYVNYHKRLIELVKVGGVI 126 (187)
Q Consensus 104 ~~---~~~~~~~~~~~~~~L~~gG~l 126 (187)
.. .++...+++.+.++|+|||+|
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 54 456788999999999999986
No 104
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.49 E-value=3.7e-13 Score=99.87 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=78.9
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
...++.+|||+|||+|..+..++..++ ..+++++|+++++++.|++++ +++.+.++|+.+..+ ++
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~~~--------~~ 104 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFDPFK--------DN 104 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccCCCC--------CC
Confidence 445677999999999999999988765 689999999999999998764 356778888765221 57
Q ss_pred ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCCcc
Q 029836 96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS 136 (187)
Q Consensus 96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~ 136 (187)
+||+|++... ++....+++++.+.+ ++++++.+..-...
T Consensus 105 sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~~ 148 (204)
T TIGR03587 105 FFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPSP 148 (204)
T ss_pred CEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCCc
Confidence 8999998764 233466777777776 56777777654433
No 105
>PRK06922 hypothetical protein; Provisional
Probab=99.49 E-value=5.8e-13 Score=111.91 Aligned_cols=113 Identities=18% Similarity=0.232 Sum_probs=88.1
Q ss_pred HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcc
Q 029836 12 SMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDE 91 (187)
Q Consensus 12 ~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~ 91 (187)
..+....++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.|+++....+ .++.++++|+.+....+.
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fe--- 484 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFE--- 484 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccC---
Confidence 3445556788999999999999999988776 7899999999999999998876554 368889999876321121
Q ss_pred cCCCceeEEEEcCC----------------CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 92 KYHGTFDFVFVDAD----------------KDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 92 ~~~~~~D~v~~d~~----------------~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+++||+|+.... ......+++.+.+.|||||.+++.+..
T Consensus 485 --deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 485 --KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred --CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 568999987531 124567889999999999999987643
No 106
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.48 E-value=4e-13 Score=111.67 Aligned_cols=113 Identities=14% Similarity=0.228 Sum_probs=88.1
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (187)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~ 88 (187)
.++..+ ...++.+|||||||+|..+..+++.. +.+++++|+++.+++.|+++.. +...++++.++|..+.. +.
T Consensus 257 ~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~~ 329 (475)
T PLN02336 257 EFVDKL-DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--YP 329 (475)
T ss_pred HHHHhc-CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--CC
Confidence 344433 23456799999999999999998865 4799999999999999998775 33357999999986531 10
Q ss_pred hcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 89 QDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 89 ~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+++||+|++... ..+...+++.+.+.|+|||.+++.+...
T Consensus 330 -----~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 330 -----DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred -----CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 468999998654 3456789999999999999999987643
No 107
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.48 E-value=2e-13 Score=98.76 Aligned_cols=97 Identities=15% Similarity=0.300 Sum_probs=74.8
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV 100 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v 100 (187)
.++||+|||.|..+..|+.. +.+++++|+++.+++.|++++... +++++.+.+..++.| .++||+|
T Consensus 45 ~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P--------~~~FDLI 110 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP--------EGRFDLI 110 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----------SS-EEEE
T ss_pred ceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC--------CCCeeEE
Confidence 59999999999999999876 578999999999999999988653 689999999987766 6899999
Q ss_pred EEcCC------CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 101 FVDAD------KDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 101 ~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
++... .+....+++.+...|+|||.+|+-.+
T Consensus 111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 98753 13455678888999999999998543
No 108
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.48 E-value=6.7e-13 Score=105.42 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+.|.....+..++...++.++||.|||+|..+..++.. +.+++++|+++.+++.+++|++..++.+ +++.++|+.+
T Consensus 166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~ 241 (329)
T TIGR01177 166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATK 241 (329)
T ss_pred CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhc
Confidence 34555566666666667789999999999998886653 5789999999999999999999999854 8899999876
Q ss_pred HHHHHhhcccCCCceeEEEEcCCC-------c-----ccHHHHHHHHhcccCCeEEEEe
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDADK-------D-----NYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~~-------~-----~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
. +.. .++||+|+.|++. . .+..+++.+.+.|+|||.+++.
T Consensus 242 l-~~~------~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 242 L-PLS------SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred C-Ccc------cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 3 211 4689999999751 1 1467888999999999998863
No 109
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=99.48 E-value=3.7e-13 Score=98.54 Aligned_cols=161 Identities=18% Similarity=0.174 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALA---IPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~---~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~ 80 (187)
.|.-.-.++.|+...+|+.|+|+|+..|++++++|+. +...++|++||++..... ++.++...+.++|++++||+
T Consensus 17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-S
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCC
Confidence 4667778899999999999999999999999998754 334689999999755432 22344455568999999998
Q ss_pred hHH--HHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHH
Q 029836 81 LPL--LDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFV 156 (187)
Q Consensus 81 ~~~--l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (187)
.+. +.+..... ......+|+.|++ +.+....|+...+++++|+++|+.|..+............-...+...+.+
T Consensus 95 ~d~~~~~~v~~~~-~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av 173 (206)
T PF04989_consen 95 IDPEIVDQVRELA-SPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAV 173 (206)
T ss_dssp SSTHHHHTSGSS-----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHH
T ss_pred CCHHHHHHHHHhh-ccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHH
Confidence 653 33221110 0245678999887 577888999999999999999999887765544322111000112234444
Q ss_pred HHHHHHHhcCCCee
Q 029836 157 QELNKALAVDPRIE 170 (187)
Q Consensus 157 ~~~~~~~~~~~~~~ 170 (187)
. +.++.+++|+
T Consensus 174 ~---~fL~~~~~f~ 184 (206)
T PF04989_consen 174 K---EFLAEHPDFE 184 (206)
T ss_dssp H---HHHHTTTTEE
T ss_pred H---HHHHHCCCcE
Confidence 4 4477787754
No 110
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=3.8e-13 Score=102.93 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=77.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
++.+|||+|||+|..+..++.. +.+++++|+++.+++.++++.. ...++++|..+. + +. +++||
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~~-----~~~fD 105 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-LA-----TATFD 105 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-CC-----CCcEE
Confidence 4679999999999998888763 5799999999999999887642 346778888653 2 11 56899
Q ss_pred EEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+|+.... ..+....+.++.+.|+|||.+++....
T Consensus 106 ~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 106 LAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred EEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9998754 356778899999999999999987544
No 111
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.47 E-value=5.6e-13 Score=106.00 Aligned_cols=109 Identities=14% Similarity=0.226 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ 86 (187)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~ 86 (187)
+..++..+.. ....+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++.+++ ..+++.+|..+.
T Consensus 185 t~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~--- 257 (342)
T PRK09489 185 SQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD--- 257 (342)
T ss_pred HHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc---
Confidence 3444444432 3346899999999999999998765 67999999999999999999999876 356777776432
Q ss_pred HhhcccCCCceeEEEEcCC-C-------cccHHHHHHHHhcccCCeEEEE
Q 029836 87 LIQDEKYHGTFDFVFVDAD-K-------DNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 87 ~~~~~~~~~~~D~v~~d~~-~-------~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
. .++||+|+++++ + .....++..+.+.|+|||.+++
T Consensus 258 ~------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 258 I------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred c------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 2 468999999875 2 1246788999999999998865
No 112
>PRK03612 spermidine synthase; Provisional
Probab=99.47 E-value=6e-13 Score=111.43 Aligned_cols=107 Identities=16% Similarity=0.231 Sum_probs=85.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHH--HHHcC---C-CCceEEEeCCchHHHHHHhhc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI--IQKAG---V-AHKIDFREGPALPLLDQLIQD 90 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~--~~~~~---~-~~~i~~~~~d~~~~l~~~~~~ 90 (187)
..++++||+||||+|..+.++++. +...+++++|+++++++.++++ +...+ . .++++++.+|+.+++...
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~--- 370 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL--- 370 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence 457899999999999999999875 4237999999999999999984 33221 1 368999999999887654
Q ss_pred ccCCCceeEEEEcCCCc--------ccHHHHHHHHhcccCCeEEEEeC
Q 029836 91 EKYHGTFDFVFVDADKD--------NYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 91 ~~~~~~~D~v~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.++||+|++|.... ...++++.+.+.|+|||++++..
T Consensus 371 ---~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 ---AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred ---CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 56899999996521 12468999999999999999753
No 113
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=7.4e-13 Score=101.71 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ 86 (187)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~ 86 (187)
+.-+++.|-..... +|||+|||.|.+++.+++..| ..+++.+|++..+++.+++|++.++.. +..++..|..+..
T Consensus 147 S~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~v-- 221 (300)
T COG2813 147 SRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEPV-- 221 (300)
T ss_pred HHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccccc--
Confidence 34455555444334 999999999999999999987 799999999999999999999999884 3367777665443
Q ss_pred HhhcccCCCceeEEEEcCC-C---cccH----HHHHHHHhcccCCeEEEE
Q 029836 87 LIQDEKYHGTFDFVFVDAD-K---DNYV----NYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 87 ~~~~~~~~~~~D~v~~d~~-~---~~~~----~~~~~~~~~L~~gG~lv~ 128 (187)
.++||+|+.+++ + +... +++..+.+.|++||-|.+
T Consensus 222 -------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 222 -------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred -------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 348999999987 2 2233 788888999999997754
No 114
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.46 E-value=8.7e-13 Score=99.78 Aligned_cols=103 Identities=21% Similarity=0.311 Sum_probs=82.9
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|.++..+++..+ ..+++++|+++.+++.+++.+. +++.++.+|..+... . .++|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~-~------~~~f 99 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL-E------DSSF 99 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC-C------CCce
Confidence 3457999999999999999998876 6789999999999988887653 378889998865421 1 5689
Q ss_pred eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
|+|++... ..+....++.+.++|+|||.+++.....
T Consensus 100 D~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 100 DLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred eEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99998754 3456789999999999999999875443
No 115
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.46 E-value=1.3e-12 Score=102.56 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=80.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
..++++|||+|||+|+.+..++... ...|+++|+++.++..++..-+..+...++.+..++..+... ..+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~--------~~~ 188 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE--------LYA 188 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC--------CCC
Confidence 3456899999999999988887653 258999999999887654333322333578888887754421 348
Q ss_pred eeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836 97 FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGG 135 (187)
Q Consensus 97 ~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
||+|++.+. ..+...++.++.+.|+|||.|++......+
T Consensus 189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 999998764 345678999999999999999987655443
No 116
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.45 E-value=4e-12 Score=102.53 Aligned_cols=117 Identities=14% Similarity=0.068 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHH-h---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe
Q 029836 2 MTSPDEAQFFSMLL-K---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE 77 (187)
Q Consensus 2 ~~~~~~~~~l~~l~-~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~ 77 (187)
|+++.+.+-+...+ . ..++.+|||+|||+|..++.++.. ..+|+++|+++.+++.|++|.+.+++ ++++++.
T Consensus 212 Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~ 287 (374)
T TIGR02085 212 QTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAA 287 (374)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 45556655554332 2 235689999999999999999853 47899999999999999999999988 5899999
Q ss_pred CCchHHHHHHhhcccCCCceeEEEEcCCCcc-cHHHHHHHHhcccCCeEEEEe
Q 029836 78 GPALPLLDQLIQDEKYHGTFDFVFVDADKDN-YVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 78 ~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+|+.+++... ..+||+|++|++... ....++.+. .++|++++++.
T Consensus 288 ~d~~~~~~~~------~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 288 LDSAKFATAQ------MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCHHHHHHhc------CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 9998776542 346999999998654 345555554 57888888763
No 117
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.45 E-value=2.5e-12 Score=97.31 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (187)
Q Consensus 6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~ 85 (187)
...+++.......++.+|||||||+|..+..+++. ..+++++|+++..++.+++++...+. ++++..++..+...
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 109 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA 109 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh
Confidence 33445555554556789999999999999888864 46899999999999999999887665 57888888866543
Q ss_pred HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 86 QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 86 ~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.. .++||+|++... ..+....++.+.+.|+|||.+++...
T Consensus 110 ~~------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 110 EH------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hc------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 22 468999988643 34566788999999999999998653
No 118
>PRK00536 speE spermidine synthase; Provisional
Probab=99.45 E-value=2.5e-12 Score=98.16 Aligned_cols=99 Identities=9% Similarity=0.010 Sum_probs=79.9
Q ss_pred HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC---CCceEEEeCCchHHHHHHhhcc
Q 029836 15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV---AHKIDFREGPALPLLDQLIQDE 91 (187)
Q Consensus 15 ~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~l~~~~~~~ 91 (187)
+.+.+|++||-||.|.|..+++++++ + .+|+.||++++.++.+++.+..... .+|++++. .+....
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~~--- 136 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLDLD--- 136 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhhcc---
Confidence 34678999999999999999999987 4 4999999999999999997775432 37888875 122210
Q ss_pred cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.++||+|++|.. ...++++.+.+.|+|||+++.
T Consensus 137 --~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 137 --IKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred --CCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEE
Confidence 368999999964 347888999999999999996
No 119
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.45 E-value=4.2e-12 Score=104.37 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=84.1
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.+..+|||+|||+|..++.+++. ..+|+++|+++.+++.|++|++.+++ .+++++++|+.+.++..... .++|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~---~~~~ 363 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWA---GQIP 363 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhc---CCCC
Confidence 34579999999999999999975 35899999999999999999999887 68999999998876654211 3579
Q ss_pred eEEEEcCCCcc-cHHHHHHHHhcccCCeEEEE
Q 029836 98 DFVFVDADKDN-YVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 98 D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+|++|++... ...+++.+. .+++++++++
T Consensus 364 D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 364 DVLLLDPPRKGCAAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred CEEEECcCCCCCCHHHHHHHH-hcCCCEEEEE
Confidence 99999998655 566777655 4788887765
No 120
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.45 E-value=3.5e-12 Score=105.07 Aligned_cols=120 Identities=12% Similarity=0.127 Sum_probs=90.1
Q ss_pred CCCHHHHH-HHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe
Q 029836 2 MTSPDEAQ-FFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE 77 (187)
Q Consensus 2 ~~~~~~~~-~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~ 77 (187)
|+++.+.+ ++..++. ..+..+|||+|||+|..++.+++. ..+|+++|+++++++.|++|++.++. .++++++
T Consensus 276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~ 351 (443)
T PRK13168 276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGL-DNVTFYH 351 (443)
T ss_pred EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEE
Confidence 34454433 3343433 234579999999999999999876 36899999999999999999999887 5799999
Q ss_pred CCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 78 GPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 78 ~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+|+.+.++..... .++||+|++|++.....+.++.+.+ ++++++++++
T Consensus 352 ~d~~~~l~~~~~~---~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 352 ANLEEDFTDQPWA---LGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred eChHHhhhhhhhh---cCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence 9998765432110 3579999999987666677765555 6888887763
No 121
>PTZ00146 fibrillarin; Provisional
Probab=99.44 E-value=7.7e-12 Score=96.46 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=77.6
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH--HHHhhcccCC
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL--DQLIQDEKYH 94 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l--~~~~~~~~~~ 94 (187)
..+..+|||+|||+|.++..+++...+.++|++||+++++.+...+..+.. +++.++.+|+.... ... .
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~------~ 200 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRML------V 200 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcc------c
Confidence 345679999999999999999998866689999999987665444433322 57889999986421 111 3
Q ss_pred CceeEEEEcCCCcc-cHHHHHHHHhcccCCeEEEE
Q 029836 95 GTFDFVFVDADKDN-YVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 95 ~~~D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~ 128 (187)
+++|+||+|....+ ...++.++.+.|||||.+++
T Consensus 201 ~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 201 PMVDVIFADVAQPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred CCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEE
Confidence 57999999986333 33455678899999999998
No 122
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.43 E-value=1.5e-11 Score=90.56 Aligned_cols=101 Identities=27% Similarity=0.417 Sum_probs=84.2
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEE
Q 029836 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVF 101 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~ 101 (187)
.+||||||.|.+...+|...| +..++|+|+....+..+.+.+...++ .|+.++++|+..+++.+.+ ++++|-|+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~----~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFP----PGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHST----TTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhccc----CCchheEE
Confidence 889999999999999999987 79999999999999999999999888 7999999999988887753 46899998
Q ss_pred Ec---CC-Cc-------ccHHHHHHHHhcccCCeEEEE
Q 029836 102 VD---AD-KD-------NYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 102 ~d---~~-~~-------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+. ++ +. -...+++.+.+.|++||.|.+
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 75 33 11 247899999999999999876
No 123
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.42 E-value=3.3e-12 Score=95.68 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=85.2
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
..++.+|||+|||.|..+..+++..+...+++++|+++.+++.+++++. ...++++..+|..+.. .. .++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~~-----~~~ 106 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--FE-----DNS 106 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--CC-----CCc
Confidence 3467899999999999999999887633799999999999999998876 3357899999887542 10 468
Q ss_pred eeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 97 FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 97 ~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
||+|++... ..+...+++.+.+.|+|||.+++.+..
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999987543 455678899999999999999986653
No 124
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.42 E-value=3.1e-12 Score=103.31 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=80.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
..++.+|||||||+|..+..+++.. +.+|+++|+++++++.++++.+. . ++++..+|..+. .++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--l--~v~~~~~D~~~l----------~~~ 228 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--L--PVEIRLQDYRDL----------NGQ 228 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--C--eEEEEECchhhc----------CCC
Confidence 3466799999999999999999765 47999999999999999998742 2 478888876532 358
Q ss_pred eeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 97 FDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 97 ~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
||.|+.... ...+..+++.+.++|||||.+++..+..
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 999986543 2345788999999999999999876543
No 125
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.41 E-value=4.8e-12 Score=99.36 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=79.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
++.+|||+|||+|..+..+++.+++..+++++|+|+++++.+++++......-++.++++|..+.++..... ......
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCeE
Confidence 457999999999999999999876457899999999999999998876432235777899987644322100 011233
Q ss_pred EEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 029836 99 FVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 99 ~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+++.+.. .++...+++.+.+.|+|||.+++.
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4444433 344567899999999999999874
No 126
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.41 E-value=2e-12 Score=100.09 Aligned_cols=94 Identities=22% Similarity=0.260 Sum_probs=72.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDD--GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
+..+|||+|||+|..+..+++.++.. ..++++|+++.+++.|+++. +++.+.++|+.+. + +. +++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~~-----~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-FA-----DQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-Cc-----CCc
Confidence 44689999999999999998876532 47999999999999987653 4688888887653 2 11 568
Q ss_pred eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
||+|+....+ ..++++.+.|+|||++++.
T Consensus 152 fD~I~~~~~~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 152 LDAIIRIYAP----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred eeEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence 9999965432 3457788999999999974
No 127
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.41 E-value=3e-12 Score=101.32 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=80.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
+..+|||+|||+|..+..+++.++ ..+++++|.++++++.|+++... .+++++.+|+.+. +-. .++||
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p~~------~~sFD 180 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-PFP------TDYAD 180 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-CCC------CCcee
Confidence 457999999999999999988775 57999999999999999987642 4688899998653 211 46899
Q ss_pred EEEEcCC---CcccHHHHHHHHhcccCCeEEEEeC
Q 029836 99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+|++... ..+....++++.+.|+|||.+++.+
T Consensus 181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9998653 2345678999999999999998743
No 128
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.41 E-value=1.2e-11 Score=89.27 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=90.9
Q ss_pred HHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836 8 AQFFSMLLK-LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ 86 (187)
Q Consensus 8 ~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~ 86 (187)
..+++.+.. .....++||+-+|+|..+++.++.. ..+++.||.+...+..+++|++..++..+++++.+|+...++.
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~ 108 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ 108 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHh
Confidence 445555555 4778899999999999999988753 4799999999999999999999999888999999999977776
Q ss_pred HhhcccCCCceeEEEEcCCCc--ccHHHHHHH----HhcccCCeEEEEe
Q 029836 87 LIQDEKYHGTFDFVFVDADKD--NYVNYHKRL----IELVKVGGVIGYD 129 (187)
Q Consensus 87 ~~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~----~~~L~~gG~lv~~ 129 (187)
... .++||+||+|++.. -........ ...|+|+|++++.
T Consensus 109 ~~~----~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 109 LGT----REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred cCC----CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 631 22499999999833 232222222 2679999999975
No 129
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.41 E-value=1.9e-12 Score=93.77 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=80.2
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceE-EEeCCchHHHHHHhhcccCCCcee
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKID-FREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
...+||+|||+|..-.+.-- .+..+|+++|+++.+-+.+.+.+++... .++. |++++.++. ++++ +++||
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l-~~l~-----d~s~D 147 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENL-PQLA-----DGSYD 147 (252)
T ss_pred ccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcC-cccc-----cCCee
Confidence 34679999999986444221 1478999999999999999999998855 5665 888888544 5443 78999
Q ss_pred EEEEc---CCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 99 FVFVD---ADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 99 ~v~~d---~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.|+.- ++.++....+.++.++|||||.+++-
T Consensus 148 tVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 148 TVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred eEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99754 45788899999999999999999873
No 130
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.40 E-value=6.8e-12 Score=94.17 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=79.3
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..+..++.. ..+++++|+++++++.|++++...+...++++.++|+.+. .++|
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~f 120 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGEF 120 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCCc
Confidence 45789999999999999999864 4689999999999999999998877666899999998643 3479
Q ss_pred eEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 029836 98 DFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 98 D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+|++-.. .......+..+.+++++++++.+.
T Consensus 121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 121 DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99986422 233456778888888888777764
No 131
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.39 E-value=1.3e-11 Score=92.75 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836 6 DEAQFFSMLLKL----INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81 (187)
Q Consensus 6 ~~~~~l~~l~~~----~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 81 (187)
...+++...+.. .++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+. .++++..+++.
T Consensus 28 ~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~ 103 (224)
T TIGR01983 28 LRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVE 103 (224)
T ss_pred HHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHH
Confidence 334555555543 34789999999999999988875 35699999999999999999887665 36888888887
Q ss_pred HHHHHHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+..... .++||+|++... ..+...+++.+.+.|++||.+++...
T Consensus 104 ~~~~~~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 104 DLAEKG------AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HhhcCC------CCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 654321 368999998643 45667888999999999999988654
No 132
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.39 E-value=4.3e-12 Score=94.69 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=75.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC--------------CCceEEEeCCchHHH
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--------------AHKIDFREGPALPLL 84 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~l 84 (187)
++.+|||+|||.|..+.++++. +..|+++|+++.+++.+.+ +.+. ..+++++++|..+.-
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 5579999999999999999975 6899999999999997533 2221 246899999997654
Q ss_pred HHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 85 DQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+.. .++||.|+-... ++....+++.+.++|+|||++++...
T Consensus 108 ~~~------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 108 AAD------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred ccc------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 322 346788764322 34456789999999999997655433
No 133
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.39 E-value=6.1e-12 Score=89.47 Aligned_cols=106 Identities=25% Similarity=0.289 Sum_probs=77.1
Q ss_pred HHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836 7 EAQFFSMLLK-LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (187)
Q Consensus 7 ~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~ 85 (187)
..+++..+.. ..+.++|||+|||.|.++..+++. +.+++++|+++.+++. .+......+.... .
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~-~ 73 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDP-P 73 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTH-H
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhh-h
Confidence 3456666664 567889999999999999988665 3599999999998876 1222222211111 1
Q ss_pred HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 86 QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 86 ~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.. .++||+|++... ..+...+++.+.++|||||++++.....
T Consensus 74 ~~------~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 74 FP------DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp CH------SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cc------ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 11 679999998765 3457889999999999999999987653
No 134
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.38 E-value=1e-12 Score=98.43 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=78.5
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC-----ceEEEeCCchHHHHHHhhcccCCC
Q 029836 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-----KIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
++|||+|||.|..+..|++. +.+|+++|+++.+++.|++........+ ++++.+.+.+.. .+
T Consensus 91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~ 157 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG 157 (282)
T ss_pred ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc
Confidence 67999999999999999986 6899999999999999999844332222 255555555433 46
Q ss_pred ceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 96 TFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 96 ~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+||.|++--. ..+..++++.+.++|+|||.+++..+..
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 7999998654 3456788999999999999999987754
No 135
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.38 E-value=1e-11 Score=93.55 Aligned_cols=120 Identities=16% Similarity=0.283 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHh------hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe
Q 029836 4 SPDEAQFFSMLLK------LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE 77 (187)
Q Consensus 4 ~~~~~~~l~~l~~------~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~ 77 (187)
.|++.+++..... +.++..+||+|||+|.+++.++..++ .++++++|.++.++..|.+|...+++..++.+++
T Consensus 127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~ 205 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH 205 (328)
T ss_pred CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence 4677888877764 33556899999999999999999998 7999999999999999999999999999998885
Q ss_pred CCc----hHHHHHHhhcccCCCceeEEEEcCC---Ccc--------------------------cHHHHHHHHhcccCCe
Q 029836 78 GPA----LPLLDQLIQDEKYHGTFDFVFVDAD---KDN--------------------------YVNYHKRLIELVKVGG 124 (187)
Q Consensus 78 ~d~----~~~l~~~~~~~~~~~~~D~v~~d~~---~~~--------------------------~~~~~~~~~~~L~~gG 124 (187)
-+. .+..+.. .+++|+++.+++ .++ +..++..+-++|++||
T Consensus 206 ~~me~d~~~~~~l~------~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg 279 (328)
T KOG2904|consen 206 NIMESDASDEHPLL------EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGG 279 (328)
T ss_pred cccccccccccccc------cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCC
Confidence 433 2222222 578999998765 111 1234555568999999
Q ss_pred EEEEeC
Q 029836 125 VIGYDN 130 (187)
Q Consensus 125 ~lv~~~ 130 (187)
.+.+.-
T Consensus 280 ~~~le~ 285 (328)
T KOG2904|consen 280 FEQLEL 285 (328)
T ss_pred eEEEEe
Confidence 998753
No 136
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.37 E-value=2.1e-11 Score=91.43 Aligned_cols=102 Identities=26% Similarity=0.407 Sum_probs=88.1
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV 100 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v 100 (187)
..+||||||.|.+...+|...| +..++|||+....+..+.+.+.+.++. |+.++.+|+.+++..+.+ +++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~----~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP----DGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC----CCCeeEE
Confidence 5899999999999999999987 789999999999999999999999984 999999999999988763 3477777
Q ss_pred EE---cCCC--c------ccHHHHHHHHhcccCCeEEEE
Q 029836 101 FV---DADK--D------NYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 101 ~~---d~~~--~------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
++ |+|+ . -...+++.+.+.|++||.|.+
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 65 5551 1 247899999999999999986
No 137
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.36 E-value=8.6e-12 Score=92.93 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=73.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCC
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHG 95 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~ 95 (187)
.++.+|||+|||+|.++..+++..++.++|++||+++. ... ++++++++|+.+. ++.+...- ..+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~~-~~~ 116 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLERV-GDS 116 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHHh-CCC
Confidence 45679999999999999999988765689999999881 122 4689999998763 33322111 146
Q ss_pred ceeEEEEcCCCc-------c-------cHHHHHHHHhcccCCeEEEEe
Q 029836 96 TFDFVFVDADKD-------N-------YVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 96 ~~D~v~~d~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+||+|+.+..+. + ...+++.+.++|+|||.+++.
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 899999986311 1 135788889999999999985
No 138
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.36 E-value=2.5e-11 Score=99.94 Aligned_cols=121 Identities=16% Similarity=0.187 Sum_probs=96.2
Q ss_pred HHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 6 DEAQFFSMLL--KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 6 ~~~~~l~~l~--~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
....+...++ ...++.+|||++++.|.-+..++..+...+.++++|+++..++.+++++++.|+ .++.+.+.|+..+
T Consensus 98 ~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~ 176 (470)
T PRK11933 98 ASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVF 176 (470)
T ss_pred HHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhh
Confidence 3344444444 445778999999999999999999887668999999999999999999999998 6789999998765
Q ss_pred HHHHhhcccCCCceeEEEEcCCCc-------c------------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 84 LDQLIQDEKYHGTFDFVFVDADKD-------N------------------YVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~~~-------~------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
.+.+ .+.||.|++|++.. + ....++.++++|||||.||.+.+..
T Consensus 177 ~~~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 177 GAAL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred hhhc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 3333 45799999997621 1 1457778889999999999877654
No 139
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.35 E-value=2.9e-11 Score=91.21 Aligned_cols=98 Identities=21% Similarity=0.273 Sum_probs=74.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++.+|||+|||+|..+..+++. ..+++++|+++.+++.|++++...+..+++.+.++|.. .. .++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~------~~~f 128 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL------LGRF 128 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc------cCCc
Confidence 45679999999999999999875 35799999999999999999988877678999998842 11 4689
Q ss_pred eEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836 98 DFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 98 D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+|++... .......++.+.++++.++++.+
T Consensus 129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 129 DTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred CEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 99987543 22345566777666655555543
No 140
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.34 E-value=1.4e-11 Score=92.32 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=74.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC--------------CCceEEEeCCchHHH
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--------------AHKIDFREGPALPLL 84 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~l 84 (187)
+..+||++|||.|..+++|++. +.+|++||+++.+++.+.+ +.++ ..++++.++|..+..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 4579999999999999999975 6899999999999987632 2222 257899999998764
Q ss_pred HHHhhcccCCCceeEEEEcC-----CCcccHHHHHHHHhcccCCeEEE
Q 029836 85 DQLIQDEKYHGTFDFVFVDA-----DKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~-----~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
+.. .+.||+|+-.. +++....++..+.++|+|||.++
T Consensus 111 ~~~------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 111 AAD------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccc------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 322 35789988332 24556788999999999998643
No 141
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.34 E-value=1.9e-11 Score=101.72 Aligned_cols=106 Identities=23% Similarity=0.344 Sum_probs=80.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCCC
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYHG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~ 95 (187)
..+..+|||+|||+|..+..+++. ..+++++|+++.+++.+++. .+..++++++++|+.+. ++ +. .+
T Consensus 35 ~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~-~~-----~~ 102 (475)
T PLN02336 35 PYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLN-IS-----DG 102 (475)
T ss_pred ccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccC-CC-----CC
Confidence 345679999999999999999976 36899999999999876552 22336889999988532 22 11 46
Q ss_pred ceeEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836 96 TFDFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLWG 134 (187)
Q Consensus 96 ~~D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
+||+|++.... .....+++.+.+.|+|||++++.+..+.
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 89999987641 2246789999999999999999776543
No 142
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.33 E-value=5.7e-11 Score=95.44 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHH-HhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC
Q 029836 2 MTSPDEAQFFSML-LKLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG 78 (187)
Q Consensus 2 ~~~~~~~~~l~~l-~~~~~--~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~ 78 (187)
|+++.+.+.+... ..... +.++||++||+|.+++.+++.. .+|+++|.++.+++.+++|++.+++ ++++++.+
T Consensus 186 Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~ 261 (362)
T PRK05031 186 QPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI-DNVQIIRM 261 (362)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEC
Confidence 4555555544443 33332 3589999999999999888763 5899999999999999999999988 58999999
Q ss_pred CchHHHHHHhhccc---------CCCceeEEEEcCCCcc-cHHHHHHHHhcccCCeEEEE
Q 029836 79 PALPLLDQLIQDEK---------YHGTFDFVFVDADKDN-YVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 79 d~~~~l~~~~~~~~---------~~~~~D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+.++++.+..... ...+||+||+|++... ....++.+.+ +++++++
T Consensus 262 d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyv 318 (362)
T PRK05031 262 SAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYI 318 (362)
T ss_pred CHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEE
Confidence 99988766432100 0125899999998654 4455555543 6776665
No 143
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.33 E-value=3.9e-11 Score=85.42 Aligned_cols=107 Identities=21% Similarity=0.340 Sum_probs=82.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~ 99 (187)
+.+|||+|||.|.....|++.- -.+.+++||.++.+++.|+...+..+.++.|+|.+.|..+. ... .++||+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~-----~~qfdl 139 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFL-----SGQFDL 139 (227)
T ss_pred ccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--ccc-----ccceeE
Confidence 4599999999999999998652 23569999999999999998888889987899999988653 111 355666
Q ss_pred EE---------EcCC--CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836 100 VF---------VDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWG 134 (187)
Q Consensus 100 v~---------~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
|. +.+. .....-++..+.++|+|||++++..+.|.
T Consensus 140 vlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 140 VLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred EeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 63 3222 22335577788899999999999888764
No 144
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.32 E-value=6.7e-11 Score=95.41 Aligned_cols=99 Identities=20% Similarity=0.185 Sum_probs=84.3
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV 100 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v 100 (187)
.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++ ++++++++|+..++.. .++||+|
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~~l~~-------~~~fD~V 129 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANALLHE-------ERKFDVV 129 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHHHHhh-------cCCCCEE
Confidence 5899999999999999987754 46899999999999999999999988 4678999999877653 2469999
Q ss_pred EEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 101 FVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
++|+. .....+++.+...+++||++.++
T Consensus 130 ~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 130 DIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 99985 44467888878889999999986
No 145
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.32 E-value=3.2e-11 Score=90.10 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=87.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCC-----CEEEEEeCCchHHHHHHHHHHHcCCCCc--eEEEeCCchHHHHHHhhcc
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDD-----GKILALDITKEHYEKGLPIIQKAGVAHK--IDFREGPALPLLDQLIQDE 91 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~-----~~v~~vd~~~~~~~~a~~~~~~~~~~~~--i~~~~~d~~~~l~~~~~~~ 91 (187)
+..++||++||+|-++.-++++.... ++|+.+|++|+++..+++...+.++.+. +.++.+|+++. | +
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F---- 173 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F---- 173 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C----
Confidence 44799999999999999999887632 7999999999999999999887777544 89999999764 3 2
Q ss_pred cCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeC
Q 029836 92 KYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 92 ~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
++++||...+... ..+....++++.+.|||||.+.+-+
T Consensus 174 -dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 174 -DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred -CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 2678999987654 5678899999999999999988643
No 146
>PLN02672 methionine S-methyltransferase
Probab=99.31 E-value=4.8e-11 Score=105.94 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC----------
Q 029836 4 SPDEAQFFSMLLKLI----NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV---------- 69 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~----~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~---------- 69 (187)
.|++..++..|.... ++.+|||+|||+|.+++.+++..+ ..+++++|+++.+++.|++|.+.+++
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence 467777777743321 246899999999999999998876 57999999999999999999998643
Q ss_pred -----CCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC
Q 029836 70 -----AHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 70 -----~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
.++++++++|..+.++.. ..+||+|+.+++
T Consensus 178 ~~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSNPP 212 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGYCRDN------NIELDRIVGCIP 212 (1082)
T ss_pred ccccccccEEEEECchhhhcccc------CCceEEEEECCC
Confidence 247999999987665321 237999998865
No 147
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.31 E-value=4.5e-11 Score=86.24 Aligned_cols=112 Identities=14% Similarity=0.017 Sum_probs=82.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
..+..++||+|||+|..+..+++. ..+++++|+++.+++.+++++.. .++++++++|+.++... ..+
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-------~~~ 77 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-------KLQ 77 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-------ccC
Confidence 345679999999999999999976 47899999999999999998854 25899999999875321 346
Q ss_pred eeEEEEcCCCcccHHHHHHHHh--cccCCeEEEEeCcCCCccccCCC
Q 029836 97 FDFVFVDADKDNYVNYHKRLIE--LVKVGGVIGYDNTLWGGSVVAPP 141 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~~~--~L~~gG~lv~~~~~~~~~~~~~~ 141 (187)
||.|+.+.+..-....+..+.. .+.++|++++..-........|.
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~ 124 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPG 124 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCC
Confidence 8999998764434455555553 24488888876544444444444
No 148
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.30 E-value=6.4e-11 Score=77.15 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=78.4
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEE
Q 029836 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVF 101 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~ 101 (187)
+++|+|||.|..+..++. . ...+++++|.++..+..+++..... ...++++.++|..+..... .++||+|+
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEA------DESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcccc------CCceEEEE
Confidence 489999999999998887 2 3689999999999999888644333 3367899999987765411 46899999
Q ss_pred EcCCC----cccHHHHHHHHhcccCCeEEEEe
Q 029836 102 VDADK----DNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 102 ~d~~~----~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
++... .....+++.+.+.+++||.+++.
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98752 34577889999999999999875
No 149
>PHA03412 putative methyltransferase; Provisional
Probab=99.29 E-value=1.3e-10 Score=87.04 Aligned_cols=102 Identities=13% Similarity=0.157 Sum_probs=77.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIP--DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~--~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
..+.+|||+|||+|..++.+++.++ +..+|+++|+++.+++.|++++ .++.++++|..... . .+
T Consensus 48 ~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~--~------~~ 113 (241)
T PHA03412 48 CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTE--F------DT 113 (241)
T ss_pred cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhccc--c------cC
Confidence 3467999999999999999987643 2468999999999999999875 35788998886432 1 45
Q ss_pred ceeEEEEcCCC-----cc----------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 96 TFDFVFVDADK-----DN----------YVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 96 ~~D~v~~d~~~-----~~----------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+||+|+.+++. .+ ...+++.+.+++++|+.|+=.+.+-
T Consensus 114 ~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~ 166 (241)
T PHA03412 114 LFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSAN 166 (241)
T ss_pred CccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccccc
Confidence 89999999761 11 3457777788888888865454443
No 150
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.29 E-value=3.1e-11 Score=88.56 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=75.2
Q ss_pred HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHH
Q 029836 10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQL 87 (187)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~ 87 (187)
+.+.+....++.+|||+|||+|..+..++....+.++++++|+++.+ .. ++++++++|..+. ++.+
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHH
Confidence 33344445677899999999999999998876546799999999864 11 4678888887542 2221
Q ss_pred hhcccCCCceeEEEEcCCC-------cc-------cHHHHHHHHhcccCCeEEEEe
Q 029836 88 IQDEKYHGTFDFVFVDADK-------DN-------YVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 88 ~~~~~~~~~~D~v~~d~~~-------~~-------~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.... ..++||+|++++.. .+ ....++.+.+.|+|||.+++.
T Consensus 91 ~~~~-~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 91 RERV-GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHHh-CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 1110 14579999997531 11 256888899999999999975
No 151
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.29 E-value=4.3e-11 Score=88.12 Aligned_cols=101 Identities=21% Similarity=0.272 Sum_probs=77.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
..+.+.|+|+.||.|..++.+++..+ ..+|+++|++|.+++.+++|++.+++..++..+++|+.++++ .+.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~ 169 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGK 169 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccc
Confidence 34678999999999999999998533 689999999999999999999999999999999999988876 368
Q ss_pred eeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
+|-|+++.+. ....+++.+..++++||++.
T Consensus 170 ~drvim~lp~-~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 170 FDRVIMNLPE-SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEEE--TS-SGGGGHHHHHHHEEEEEEEE
T ss_pred cCEEEECChH-HHHHHHHHHHHHhcCCcEEE
Confidence 9999997753 34478888999999999885
No 152
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.28 E-value=2e-10 Score=92.00 Aligned_cols=120 Identities=13% Similarity=0.050 Sum_probs=86.1
Q ss_pred CCCHHHHHHHH-HHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC
Q 029836 2 MTSPDEAQFFS-MLLKLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG 78 (187)
Q Consensus 2 ~~~~~~~~~l~-~l~~~~~--~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~ 78 (187)
|+++.+.+.|. .+....+ +.++||+|||+|.+++.+++.. .+|+++|+++++++.|++|++.+++ .+++++.+
T Consensus 177 Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~ 252 (353)
T TIGR02143 177 QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRM 252 (353)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEc
Confidence 45555554444 4444332 4579999999999999888763 4899999999999999999999988 57999999
Q ss_pred CchHHHHHHhhc-------ccC--CCceeEEEEcCCCcc-cHHHHHHHHhcccCCeEEEE
Q 029836 79 PALPLLDQLIQD-------EKY--HGTFDFVFVDADKDN-YVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 79 d~~~~l~~~~~~-------~~~--~~~~D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+.++++..... ..+ ...||+||+|++... ....++.+.+ +++++++
T Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYv 309 (353)
T TIGR02143 253 SAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYI 309 (353)
T ss_pred CHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEE
Confidence 998877642110 000 013899999998655 4555565543 6777765
No 153
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.27 E-value=1.5e-10 Score=92.94 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=87.9
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV 100 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v 100 (187)
.+|||..||+|..++.++...+...+|+++|+++.+++.+++|++.++. .++++.++|+..++... ..+||+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~------~~~fDvI 118 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYR------NRKFHVI 118 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHh------CCCCCEE
Confidence 4899999999999999998754347899999999999999999999887 47899999998887754 4679999
Q ss_pred EEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836 101 FVDADKDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
++|+. .....+++.+.+.+++||+|.+.-
T Consensus 119 dlDPf-Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 119 DIDPF-GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred EeCCC-CCcHHHHHHHHHhcccCCEEEEEe
Confidence 99984 445689999999999999999863
No 154
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.27 E-value=2.6e-11 Score=93.43 Aligned_cols=105 Identities=25% Similarity=0.302 Sum_probs=75.8
Q ss_pred CCCEEEEEcccccHH----HHHHHhhCCC----CCEEEEEeCCchHHHHHHHHHHH----cC------------------
Q 029836 19 NAKNTMEIGVFTGYS----LLATALAIPD----DGKILALDITKEHYEKGLPIIQK----AG------------------ 68 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~----~~~l~~~~~~----~~~v~~vd~~~~~~~~a~~~~~~----~~------------------ 68 (187)
++.+|+++|||+|.. +..+++..+. +.+|+++|+++.+++.|++.+-. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 456999999999973 4445554432 46899999999999999985310 01
Q ss_pred ----CCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeC
Q 029836 69 ----VAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 69 ----~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+..+++|.++|..+..+. .++||+|++... .+.....++.+.+.|+|||++++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~-------~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPP-------LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCc-------cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 114688888888764221 468999998643 2344579999999999999999743
No 155
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.8e-10 Score=94.04 Aligned_cols=118 Identities=18% Similarity=0.151 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHH----hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe
Q 029836 2 MTSPDEAQFFSMLL----KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE 77 (187)
Q Consensus 2 ~~~~~~~~~l~~l~----~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~ 77 (187)
|+++.+.+-|...+ ...+.+++||+.||.|.+++.+++. ..+|+++|+++++++.|++|.+.++.. |++|..
T Consensus 272 Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~ 347 (432)
T COG2265 272 QVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGID-NVEFIA 347 (432)
T ss_pred ecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEe
Confidence 55666666655554 3345679999999999999999954 579999999999999999999999995 599999
Q ss_pred CCchHHHHHHhhcccCCCceeEEEEcCCCcccH-HHHHHHHhcccCCeEEEE
Q 029836 78 GPALPLLDQLIQDEKYHGTFDFVFVDADKDNYV-NYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 78 ~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~-~~~~~~~~~L~~gG~lv~ 128 (187)
++++++.+.... ...+|.|++|+++.... .+++.+ ..++|-.++.+
T Consensus 348 ~~ae~~~~~~~~----~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYV 394 (432)
T COG2265 348 GDAEEFTPAWWE----GYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYV 394 (432)
T ss_pred CCHHHHhhhccc----cCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEE
Confidence 999998876521 35789999999977776 555554 55677776665
No 156
>PRK06202 hypothetical protein; Provisional
Probab=99.25 E-value=4.1e-11 Score=90.71 Aligned_cols=103 Identities=14% Similarity=0.046 Sum_probs=72.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIP---DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~---~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
.++.+|||+|||+|..+..+++..+ .+.+++++|+++++++.|+++.... ++++...++... +.. +
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~~~------~ 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-VAE------G 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-ccc------C
Confidence 4667999999999999998876432 2469999999999999998876432 455555544322 211 5
Q ss_pred CceeEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 95 GTFDFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 95 ~~~D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
++||+|++...- .....++.++.+.++ |.+++.+...
T Consensus 128 ~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 128 ERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred CCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 689999987541 123568888888887 5666666543
No 157
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.24 E-value=3.6e-11 Score=88.72 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=84.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC-CCceEEEeCCchHHHHHHhhcccCCC
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV-AHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
..+.++|||..+|.|+.+++.++.- ..+|+.+|.+|..++.|+-|-=..++ +.+++++.||+.++.+.+. +.
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-----D~ 204 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-----DE 204 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC-----cc
Confidence 3457899999999999999888752 24999999999999888755433333 2468999999999998884 67
Q ss_pred ceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEE
Q 029836 96 TFDFVFVDADKD------NYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 96 ~~D~v~~d~~~~------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+||+|+.|++.- ...++++++.+.|++||.++.
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 899999998732 236789999999999999973
No 158
>PRK05785 hypothetical protein; Provisional
Probab=99.24 E-value=1.2e-10 Score=87.81 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=72.8
Q ss_pred HHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836 10 FFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (187)
Q Consensus 10 ~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~ 88 (187)
++..+... .++.+|||+|||+|..+..+++.. +.+|+++|+++++++.|++. ..++++|+.+. + +.
T Consensus 41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p-~~ 107 (226)
T PRK05785 41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-P-FR 107 (226)
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-C-CC
Confidence 34444332 347899999999999999998765 46999999999999998763 13467777643 2 11
Q ss_pred hcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCe
Q 029836 89 QDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGG 124 (187)
Q Consensus 89 ~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG 124 (187)
+++||+|++... ..+....++++.+.|||..
T Consensus 108 -----d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 108 -----DKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -----CCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 679999998654 4567789999999999953
No 159
>PHA03411 putative methyltransferase; Provisional
Probab=99.22 E-value=4.5e-10 Score=85.93 Aligned_cols=96 Identities=11% Similarity=0.186 Sum_probs=73.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
...+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++ ++++++++|+.++.. .++||
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~kFD 128 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEKFD 128 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCCCc
Confidence 457999999999999998887654 479999999999999998864 478899999976542 45899
Q ss_pred EEEEcCCC-----c------cc------------HHHHHHHHhcccCCeEEEEe
Q 029836 99 FVFVDADK-----D------NY------------VNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 99 ~v~~d~~~-----~------~~------------~~~~~~~~~~L~~gG~lv~~ 129 (187)
+|+++++. . .+ ..++.....+|+|+|.+.+-
T Consensus 129 lIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 129 VVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 99998761 1 01 34555556788999877653
No 160
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.22 E-value=2.1e-10 Score=88.32 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=79.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
-.++++|||||||.|+.+..++..- ...|+++|+++......+..-+-.|....+... ....+.++. .+.
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~-------~~~ 182 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN-------LGA 182 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc-------cCC
Confidence 4578999999999999999888763 368999999998776544322223332333333 233344443 368
Q ss_pred eeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCcc
Q 029836 97 FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS 136 (187)
Q Consensus 97 ~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~ 136 (187)
||+||+-+. ..+....+..+...|++||.+|+......|.
T Consensus 183 FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 999998775 5677889999999999999999887766554
No 161
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.22 E-value=6.2e-11 Score=87.95 Aligned_cols=110 Identities=19% Similarity=0.363 Sum_probs=80.1
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC--------------------------
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-------------------------- 70 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-------------------------- 70 (187)
...++.+|||||.+|..++.+++.+. ...+.|+||++..+..|+++++...-.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 45788999999999999999999997 578999999999999999998743110
Q ss_pred --------CceEEEeC----CchHHHHHHhhcccCCCceeEEEEcCC---------CcccHHHHHHHHhcccCCeEEEEe
Q 029836 71 --------HKIDFREG----PALPLLDQLIQDEKYHGTFDFVFVDAD---------KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 71 --------~~i~~~~~----d~~~~l~~~~~~~~~~~~~D~v~~d~~---------~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++.+... +..+++... ...||+|++-.- -+....+|..+.++|.|||+||+.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~------~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMI------QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhc------cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 11111111 112333211 568999986421 355789999999999999999975
Q ss_pred CcCC
Q 029836 130 NTLW 133 (187)
Q Consensus 130 ~~~~ 133 (187)
---|
T Consensus 209 PQpW 212 (288)
T KOG2899|consen 209 PQPW 212 (288)
T ss_pred CCch
Confidence 5444
No 162
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.19 E-value=7.6e-11 Score=86.81 Aligned_cols=127 Identities=16% Similarity=0.197 Sum_probs=84.8
Q ss_pred HHHHHHHHHhh-----cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836 7 EAQFFSMLLKL-----INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81 (187)
Q Consensus 7 ~~~~l~~l~~~-----~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 81 (187)
...||..+... .+..+.||+|+|.|..|..++..+ ..+|..||+.+..++.|++.+.... ....++++...+
T Consensus 38 S~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ 114 (218)
T PF05891_consen 38 SRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQ 114 (218)
T ss_dssp HHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GG
T ss_pred HHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHh
Confidence 34555555443 235699999999999999887443 4799999999999999998776521 134577888887
Q ss_pred HHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe-CcCCCcc-ccCCCCC
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD-NTLWGGS-VVAPPDA 143 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~-~~~~~~~-~~~~~~~ 143 (187)
++.|. ..+||+|.+... -++...||++|...|+|+|+|++. |+...+. ..++++.
T Consensus 115 ~f~P~-------~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~Ds 176 (218)
T PF05891_consen 115 DFTPE-------EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDS 176 (218)
T ss_dssp G-----------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTT
T ss_pred hccCC-------CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccC
Confidence 77764 469999999875 356788999999999999999994 4444443 4444443
No 163
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=99.17 E-value=4.1e-10 Score=82.00 Aligned_cols=96 Identities=19% Similarity=0.254 Sum_probs=81.6
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEE
Q 029836 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVF 101 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~ 101 (187)
+++|||+|.|..++.++-..| +.+++.+|.....+...+......++ +|++++++++++ +.. ..+||+|+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~--~~~------~~~fd~v~ 120 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE--PEY------RESFDVVT 120 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH--TTT------TT-EEEEE
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc--ccc------CCCccEEE
Confidence 899999999999999999887 79999999999999999999999999 589999999987 111 67999999
Q ss_pred EcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 102 VDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 102 ~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..+. .....+++.+.+++++||.+++
T Consensus 121 aRAv-~~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 121 ARAV-APLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp EESS-SSHHHHHHHHGGGEEEEEEEEE
T ss_pred eehh-cCHHHHHHHHHHhcCCCCEEEE
Confidence 9874 3567888999999999999885
No 164
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.17 E-value=6.4e-10 Score=87.53 Aligned_cols=96 Identities=18% Similarity=0.085 Sum_probs=69.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC----CCceEEEeCCchHHHHHHhhcccCC
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV----AHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++.+..+. ..++++..+|..+. .
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~ 210 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S 210 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence 4679999999999999999974 57999999999999999999886532 14678888886432 4
Q ss_pred CceeEEEEcCC----C-cccHHHHHHHHhcccCCeEEEE
Q 029836 95 GTFDFVFVDAD----K-DNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 95 ~~~D~v~~d~~----~-~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
++||+|++-.. . .....++..+.+ +.+|++++.
T Consensus 211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 211 GKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred CCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 68999986432 1 122334555543 456776653
No 165
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.17 E-value=5.4e-10 Score=81.30 Aligned_cols=121 Identities=21% Similarity=0.180 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCC--------EEEEEeCCchHHHHHHHHHHHcCCCCce
Q 029836 2 MTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDG--------KILALDITKEHYEKGLPIIQKAGVAHKI 73 (187)
Q Consensus 2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~--------~v~~vd~~~~~~~~a~~~~~~~~~~~~i 73 (187)
++.+.....|-.++...+...+||--||+|.+.++.+....... ++++.|+++++++.+++|++..+....+
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 35677778888888888888999999999999998765544222 4899999999999999999999998889
Q ss_pred EEEeCCchHHHHHHhhcccCCCceeEEEEcCCC-----------cccHHHHHHHHhcccCCeEEEEe
Q 029836 74 DFREGPALPLLDQLIQDEKYHGTFDFVFVDADK-----------DNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 74 ~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~-----------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+.+.|+.++- .. .+++|.|+.|++. .-|..+++.+.+.+++..++++.
T Consensus 91 ~~~~~D~~~l~--~~-----~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 91 DFIQWDARELP--LP-----DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEE--GGGGG--GT-----TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEecchhhcc--cc-----cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 99999997664 11 5789999999871 22456778888889996666653
No 166
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.17 E-value=1.1e-10 Score=82.91 Aligned_cols=78 Identities=27% Similarity=0.354 Sum_probs=59.4
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV 100 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v 100 (187)
+.|+|..||.|..++.+|+.. .+|+++|+++..++.|+.|.+-.|..++++++++|..+.++.+.. ...+|+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEE
Confidence 368999999999999999873 589999999999999999999999989999999999988766531 1128999
Q ss_pred EEcCC
Q 029836 101 FVDAD 105 (187)
Q Consensus 101 ~~d~~ 105 (187)
|++++
T Consensus 74 FlSPP 78 (163)
T PF09445_consen 74 FLSPP 78 (163)
T ss_dssp EE---
T ss_pred EECCC
Confidence 99975
No 167
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=9.8e-10 Score=78.27 Aligned_cols=104 Identities=21% Similarity=0.164 Sum_probs=81.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
.++.++|||||+|..+.++++.+.+.....++|++|++++..++-.+.++. ++..++.|....+. .++.|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VD 112 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVD 112 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCcc
Confidence 488999999999999999999887778999999999999999998888775 57788887765554 57899
Q ss_pred EEEEcCCC-----c-c------------------cHHHHHHHHhcccCCeEEEEeCcC
Q 029836 99 FVFVDADK-----D-N------------------YVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 99 ~v~~d~~~-----~-~------------------~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+++.+++. + . ...++..+-.+|.|.|++...-..
T Consensus 113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 99988651 0 0 134455555788899998865443
No 168
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.14 E-value=8.3e-10 Score=79.92 Aligned_cols=107 Identities=20% Similarity=0.227 Sum_probs=71.6
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC--CCCceEEEeCCchHHH-HHHhhcccC
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--VAHKIDFREGPALPLL-DQLIQDEKY 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~l-~~~~~~~~~ 93 (187)
..++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++.++ ...++++...+..+.. +... .
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~ 116 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----E 116 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----S
T ss_pred hcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----c
Confidence 55788999999999999999888743 68999999998 9999999999887 4567888777654422 2221 1
Q ss_pred CCceeEEEEcC-C--CcccHHHHHHHHhcccCCeEEEEe
Q 029836 94 HGTFDFVFVDA-D--KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 94 ~~~~D~v~~d~-~--~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+||+|+... - .+.+..+++.+..+|+++|.+++.
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45899999543 2 566788899999999999886653
No 169
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.13 E-value=4e-09 Score=82.09 Aligned_cols=149 Identities=20% Similarity=0.271 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (187)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 84 (187)
.....+...++...+..+|||+.++.|.=+..++..+...+.+++.|+++..+...++++++.|. .++.+...|+....
T Consensus 71 d~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~ 149 (283)
T PF01189_consen 71 DESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLD 149 (283)
T ss_dssp HHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHH
T ss_pred ccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeecccccc
Confidence 34445555566666778999999999999999999887679999999999999999999999998 67888878887765
Q ss_pred HHHhhcccCCCceeEEEEcCCC---------cc----------------cHHHHHHHHhcc----cCCeEEEEeCcCCCc
Q 029836 85 DQLIQDEKYHGTFDFVFVDADK---------DN----------------YVNYHKRLIELV----KVGGVIGYDNTLWGG 135 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~~---------~~----------------~~~~~~~~~~~L----~~gG~lv~~~~~~~~ 135 (187)
+... ...||.|++|++. .+ ....++.+.+++ +|||.++...+...
T Consensus 150 ~~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~- 223 (283)
T PF01189_consen 150 PKKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS- 223 (283)
T ss_dssp HHHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH-
T ss_pred cccc-----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH-
Confidence 5542 3469999999761 00 145778888999 99999997655332
Q ss_pred cccCCCCCCchhhhhhHHHHHHHHHHHHhcCCCeeEEEeec
Q 029836 136 SVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISI 176 (187)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 176 (187)
+ .+-...++.| +..+++++..-.+.
T Consensus 224 ----~---------eENE~vV~~f---l~~~~~~~l~~~~~ 248 (283)
T PF01189_consen 224 ----P---------EENEEVVEKF---LKRHPDFELVPIPL 248 (283)
T ss_dssp ----G---------GGTHHHHHHH---HHHSTSEEEECCES
T ss_pred ----H---------HHHHHHHHHH---HHhCCCcEEEeccc
Confidence 1 1222355555 45566776554443
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.13 E-value=2.8e-09 Score=83.20 Aligned_cols=90 Identities=20% Similarity=0.157 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (187)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 84 (187)
+.....+-..+...+..+|||||||.|..+..+++. ..+++++|+++.+++.+++++...+..++++++++|+.+..
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 334444444444556789999999999999999875 46899999999999999999988775578999999997642
Q ss_pred HHHhhcccCCCceeEEEEcCCC
Q 029836 85 DQLIQDEKYHGTFDFVFVDADK 106 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~~ 106 (187)
...||.|+.+.+.
T Consensus 99 ---------~~~~d~VvaNlPY 111 (294)
T PTZ00338 99 ---------FPYFDVCVANVPY 111 (294)
T ss_pred ---------ccccCEEEecCCc
Confidence 2468999987763
No 171
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.6e-09 Score=85.64 Aligned_cols=126 Identities=17% Similarity=0.230 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 81 (187)
++.....+...++...++.+|||+.++.|.=|..++..+.. +..|+++|.++..++..++|+++.|.. ++.+++.|+.
T Consensus 140 vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~ 218 (355)
T COG0144 140 VQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDAR 218 (355)
T ss_pred EcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccc
Confidence 34555666666777778899999999999999999998864 356699999999999999999999994 5788888775
Q ss_pred HHHHHHhhcccCCCceeEEEEcCCCc---------c----------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDADKD---------N----------------YVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
....... ..++||.|++|++.. + ..++++.++++|||||.|+.+.+..
T Consensus 219 ~~~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 219 RLAELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred ccccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 4432221 023599999997610 0 1467788889999999999877654
No 172
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.12 E-value=9.9e-10 Score=86.41 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=65.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc-CCCCceEEEe-CCchHHHHHHhhcccCCCc
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA-GVAHKIDFRE-GPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~ 96 (187)
+..++||||||+|.+...++...+ +.+++++|+++.+++.|+++++.+ ++..++++++ .+..+.+..+... .+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~---~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHK---NER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccccc---CCc
Confidence 347999999999998888877655 689999999999999999999999 7888898865 4444444332111 468
Q ss_pred eeEEEEcCC
Q 029836 97 FDFVFVDAD 105 (187)
Q Consensus 97 ~D~v~~d~~ 105 (187)
||+|++.++
T Consensus 190 fDlivcNPP 198 (321)
T PRK11727 190 FDATLCNPP 198 (321)
T ss_pred eEEEEeCCC
Confidence 999999987
No 173
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.2e-09 Score=76.33 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836 5 PDEAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81 (187)
Q Consensus 5 ~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 81 (187)
+.....+-..+. ....+.|+|+|||+|..++-.+.. + ..+|+|+|+++++++.+++|..+ +..+++|+.+|..
T Consensus 28 ~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l-G-a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~ 103 (198)
T COG2263 28 APLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL-G-ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVS 103 (198)
T ss_pred hHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc-C-CcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchh
Confidence 334444444443 335678999999999998876654 3 48999999999999999999998 3368999999997
Q ss_pred HHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHh
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIE 118 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~ 118 (187)
++ ...+|.++.+++ +..-..|++.+..
T Consensus 104 ~~----------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale 135 (198)
T COG2263 104 DF----------RGKFDTVIMNPPFGSQRRHADRPFLLKALE 135 (198)
T ss_pred hc----------CCccceEEECCCCccccccCCHHHHHHHHH
Confidence 65 568899999976 2223455555554
No 174
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.11 E-value=7.1e-10 Score=80.25 Aligned_cols=133 Identities=8% Similarity=0.071 Sum_probs=86.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.+..+|||+|||.|....++.+. ++.+..++|++++.+..+.+ .-+.++++|..+.++.+. +++|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~-----d~sF 76 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFP-----DQSF 76 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCC-----CCCc
Confidence 35679999999999999888875 26899999999988766544 356799999998888774 6899
Q ss_pred eEEEEcCCCcc---cHHHHHHHHhcccCCeEEEEeCc-C--------CCccccCCCCCC--chhhhhhHHHHHHHHHHHH
Q 029836 98 DFVFVDADKDN---YVNYHKRLIELVKVGGVIGYDNT-L--------WGGSVVAPPDAD--LDEHFLYLRDFVQELNKAL 163 (187)
Q Consensus 98 D~v~~d~~~~~---~~~~~~~~~~~L~~gG~lv~~~~-~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 163 (187)
|.|++.-.-+. ....++++.+. ...+++.|-|. + +.|+++....-+ +....+-..-.++.|.+..
T Consensus 77 D~VIlsqtLQ~~~~P~~vL~EmlRV-gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc 155 (193)
T PF07021_consen 77 DYVILSQTLQAVRRPDEVLEEMLRV-GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLC 155 (193)
T ss_pred cEEehHhHHHhHhHHHHHHHHHHHh-cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHH
Confidence 99998654222 33445554432 23456666665 2 255544332211 1112223345567776666
Q ss_pred hcC
Q 029836 164 AVD 166 (187)
Q Consensus 164 ~~~ 166 (187)
...
T Consensus 156 ~~~ 158 (193)
T PF07021_consen 156 REL 158 (193)
T ss_pred HHC
Confidence 554
No 175
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.11 E-value=2.1e-09 Score=80.46 Aligned_cols=116 Identities=20% Similarity=0.265 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH-cC----------CCC
Q 029836 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK-AG----------VAH 71 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~-~~----------~~~ 71 (187)
.+|.-.+++.. ....++.+||..|||.|.-..+|++. +.+|+++|+++.+++.+.+.-.. .. ...
T Consensus 22 ~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~ 97 (218)
T PF05724_consen 22 PNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG 97 (218)
T ss_dssp STHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred CCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence 34555556665 33455669999999999999999986 67999999999999877322111 00 124
Q ss_pred ceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836 72 KIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 72 ~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+++++++|..++-+.. .++||+|+=... ++...++.+.+.++|+|||.+++
T Consensus 98 ~i~~~~gDfF~l~~~~------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 98 RITIYCGDFFELPPED------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp SEEEEES-TTTGGGSC------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred ceEEEEcccccCChhh------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 6899999998754432 358999985432 56678899999999999999433
No 176
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.10 E-value=2e-09 Score=75.74 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
++-.++.+...+....+..|||+|.|+|..|..+++..-+...++++|.+++......+.+ +.++++.||+.+.
T Consensus 33 Ss~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l 106 (194)
T COG3963 33 SSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDL 106 (194)
T ss_pred cHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhH
Confidence 3444444444455566779999999999999999887655689999999999998777655 4567999999775
Q ss_pred HHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836 84 LDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
-..+.+.. .+.||.|+..-+ .....+.++.+...|+.||.++-
T Consensus 107 ~~~l~e~~--gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 107 RTTLGEHK--GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred HHHHhhcC--CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 43332221 568999998765 33456789999999999999884
No 177
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.06 E-value=1.6e-09 Score=81.24 Aligned_cols=109 Identities=11% Similarity=0.021 Sum_probs=79.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH------H-----cCCCCceEEEeCCchHHHHHH
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ------K-----AGVAHKIDFREGPALPLLDQL 87 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~------~-----~~~~~~i~~~~~d~~~~l~~~ 87 (187)
++.+||..|||.|....+|+.. +.+|+++|+++.+++.+.+... + .....+++++++|..++-+..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 4579999999999999999975 6789999999999987754110 0 001247899999998753210
Q ss_pred hhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836 88 IQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG 134 (187)
Q Consensus 88 ~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
. ..++||+|+-.+. ++....+.+.+.++|+|||.+++-...+.
T Consensus 120 ~----~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 120 N----NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred c----ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 0 0357999875543 45567889999999999998877554433
No 178
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=1.2e-09 Score=80.97 Aligned_cols=97 Identities=23% Similarity=0.283 Sum_probs=83.9
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc-ee
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT-FD 98 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~-~D 98 (187)
+++++|||+|.|..++.++-..| +.+++.+|.....+...++...+.++ +|++++++.++++.+.. . ||
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~--------~~~D 137 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEK--------KQYD 137 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhccccc--------ccCc
Confidence 68999999999999999997766 67799999999999999999999999 78999999998775432 3 99
Q ss_pred EEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 99 FVFVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
+|.+.+. .......+-+.+++++||.++
T Consensus 138 ~vtsRAv-a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 138 VVTSRAV-ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred EEEeehc-cchHHHHHHHHHhcccCCcch
Confidence 9998763 456678889999999999876
No 179
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.05 E-value=1.9e-09 Score=84.56 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-Cc
Q 029836 2 MTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PA 80 (187)
Q Consensus 2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~ 80 (187)
++.|...+.+-.|+...+++.+||=-||+|...++..-. ++++++.|++..+++-|+.|++..+.. ...+... |+
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da 255 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDA 255 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEeccc
Confidence 578999999999999999999999999999999887643 689999999999999999999999874 4544444 77
Q ss_pred hHHHHHHhhcccCCCceeEEEEcCC-------C-cc----cHHHHHHHHhcccCCeEEEEe
Q 029836 81 LPLLDQLIQDEKYHGTFDFVFVDAD-------K-DN----YVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 81 ~~~l~~~~~~~~~~~~~D~v~~d~~-------~-~~----~~~~~~~~~~~L~~gG~lv~~ 129 (187)
... + +. ..++|.|..|++ + .. +.++++.+...|++||++++.
T Consensus 256 ~~l-p-l~-----~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 256 TNL-P-LR-----DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred ccC-C-CC-----CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 543 3 31 346999999987 1 11 577889999999999999873
No 180
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.2e-09 Score=78.17 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=83.7
Q ss_pred HHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHHcCC---------CCceEE
Q 029836 7 EAQFFSMLLK-LINAKNTMEIGVFTGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGV---------AHKIDF 75 (187)
Q Consensus 7 ~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~l~~~~~~~~-~v~~vd~~~~~~~~a~~~~~~~~~---------~~~i~~ 75 (187)
...++..|-. +.+.-+.||+|+|+|+.+..++..+...+ ..++||..++.++.+++++.+.-- ..+..+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 4455566553 45667999999999999999997665344 459999999999999999987541 145788
Q ss_pred EeCCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 76 REGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 76 ~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+.||.....+. ..+||.|++.+..... -+.+...|++||.+++
T Consensus 149 vvGDgr~g~~e-------~a~YDaIhvGAaa~~~---pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 149 VVGDGRKGYAE-------QAPYDAIHVGAAASEL---PQELLDQLKPGGRLLI 191 (237)
T ss_pred EeCCccccCCc-------cCCcceEEEccCcccc---HHHHHHhhccCCeEEE
Confidence 88998765553 5699999998754333 3456678889988875
No 181
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.04 E-value=3.3e-09 Score=83.65 Aligned_cols=107 Identities=20% Similarity=0.191 Sum_probs=91.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
...+++|||+-+|.|..++.+|..-. .+|+++|++|.+++.+++|++.++....+..++||+.++.+.. +.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~~ 256 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-------GV 256 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-------cc
Confidence 34589999999999999999998743 3499999999999999999999999888999999999887753 57
Q ss_pred eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+|-|++..+ .....++..+...+++||++.+.+...
T Consensus 257 aDrIim~~p-~~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 257 ADRIIMGLP-KSAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred CCEEEeCCC-CcchhhHHHHHHHhhcCcEEEEEeccc
Confidence 999999764 344577888889999999999876554
No 182
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.7e-09 Score=80.58 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=85.6
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (187)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~ 88 (187)
+++-.++...++.+|+|-|+|+|..+.++++..++.++++..|..+...+.|++-++..+..+++++.+.|....--...
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 34445557788899999999999999999999988899999999999999999999999999999999988764211110
Q ss_pred hcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCe-EEE
Q 029836 89 QDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGG-VIG 127 (187)
Q Consensus 89 ~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG-~lv 127 (187)
...+|.||+|.+.. -..+..+.+.||.+| +++
T Consensus 175 -----s~~aDaVFLDlPaP--w~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 175 -----SLKADAVFLDLPAP--WEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred -----ccccceEEEcCCCh--hhhhhhhHHHhhhcCceEE
Confidence 45799999997521 122333344666555 444
No 183
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.04 E-value=3.3e-10 Score=83.56 Aligned_cols=159 Identities=13% Similarity=0.180 Sum_probs=97.8
Q ss_pred HHHHHHHhhcC---CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836 9 QFFSMLLKLIN---AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (187)
Q Consensus 9 ~~l~~l~~~~~---~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~ 85 (187)
.++.+++.... -+++||+|||+|..+..+-.. ..++++||+|+.|+++|.+. ++ .=++.+.++..+++
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~--YD~L~~Aea~~Fl~ 182 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GL--YDTLYVAEAVLFLE 182 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cc--hHHHHHHHHHHHhh
Confidence 44444444332 469999999999988876654 35899999999999988652 11 22445666666666
Q ss_pred HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHH
Q 029836 86 QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKA 162 (187)
Q Consensus 86 ~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (187)
.. +.+.||+|..-.. ......+|-.+..+|+|||.+.|+-=.-.+.. .=...++.|+. .-+.+.+.
T Consensus 183 ~~-----~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-~f~l~ps~RyA-----H~~~YVr~ 251 (287)
T COG4976 183 DL-----TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG-GFVLGPSQRYA-----HSESYVRA 251 (287)
T ss_pred hc-----cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC-Ceecchhhhhc-----cchHHHHH
Confidence 44 2578999985322 34556677778899999999998522111110 00112233332 22334444
Q ss_pred HhcCCCeeEEEe-----------ecCCeeEEEEEcC
Q 029836 163 LAVDPRIEICQI-----------SIADGVTLCRRIG 187 (187)
Q Consensus 163 ~~~~~~~~~~~~-----------p~~~G~~i~~k~~ 187 (187)
.....+++.+-. |+..++.|++|+.
T Consensus 252 ~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~~ 287 (287)
T COG4976 252 LLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKKA 287 (287)
T ss_pred HHHhcCceEEEeecccchhhcCCCCCCceEEEecCC
Confidence 445556554433 6778888888863
No 184
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.03 E-value=8.9e-10 Score=83.86 Aligned_cols=99 Identities=19% Similarity=0.231 Sum_probs=79.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
..+.++|||||+|.|..+..+++..| +.+++..|. |+.++.+++ .++++++.+|..+.+| .
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P---------~- 158 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLP---------V- 158 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCS---------S-
T ss_pred ccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhhhc---------c-
Confidence 44567999999999999999999998 789999999 888888877 4799999999975443 3
Q ss_pred eeEEEEcCC-----CcccHHHHHHHHhcccCC--eEEEEeCcCCC
Q 029836 97 FDFVFVDAD-----KDNYVNYHKRLIELVKVG--GVIGYDNTLWG 134 (187)
Q Consensus 97 ~D~v~~d~~-----~~~~~~~~~~~~~~L~~g--G~lv~~~~~~~ 134 (187)
+|++++-.- .+.....++++.+.|+|| |.|++.+.+..
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 999998653 445678899999999999 99998887654
No 185
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.02 E-value=9.7e-09 Score=78.58 Aligned_cols=115 Identities=21% Similarity=0.259 Sum_probs=92.9
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhc
Q 029836 14 LLKLINAKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQD 90 (187)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~ 90 (187)
|....+|-+||||.||.|...+..+...+. ..++...|.++..++..++.+++.|+.+.++|.++|+.+. +..+
T Consensus 130 L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l--- 206 (311)
T PF12147_consen 130 LREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAAL--- 206 (311)
T ss_pred HHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhcc---
Confidence 334457889999999999999998888774 3689999999999999999999999987779999999874 3333
Q ss_pred ccCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836 91 EKYHGTFDFVFVDADKD------NYVNYHKRLIELVKVGGVIGYDNTLWG 134 (187)
Q Consensus 91 ~~~~~~~D~v~~d~~~~------~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
...++++++.+-.+ -....+.-+...+.|||++|..+--|+
T Consensus 207 ---~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 207 ---DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred ---CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 56789999877522 134467777889999999999886654
No 186
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.01 E-value=1.7e-09 Score=79.70 Aligned_cols=89 Identities=11% Similarity=0.161 Sum_probs=64.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
++.+|||+|||+|..+..+++.. ...++++|+++++++.+++ .+++++++|+.+.++... +++||
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~-----~~sfD 77 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFP-----DKSFD 77 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccC-----CCCcC
Confidence 56799999999999998887653 4578999999999887754 246788888765333221 46899
Q ss_pred EEEEcCC---CcccHHHHHHHHhcccC
Q 029836 99 FVFVDAD---KDNYVNYHKRLIELVKV 122 (187)
Q Consensus 99 ~v~~d~~---~~~~~~~~~~~~~~L~~ 122 (187)
+|++... ..+...+++++.+.+++
T Consensus 78 ~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 78 YVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 9998754 33455667776665543
No 187
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.01 E-value=1.5e-08 Score=84.84 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=83.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
....+||||||.|.++..+|...| +..++|+|+....+..+.+.....++ .|+.++.+++..+...+. ++++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~-----~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLP-----NNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcC-----ccccc
Confidence 356889999999999999999987 78999999999999988888888887 689998888754444442 46788
Q ss_pred EEEEc---CCC--c------ccHHHHHHHHhcccCCeEEEE
Q 029836 99 FVFVD---ADK--D------NYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 99 ~v~~d---~~~--~------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.|++. +|+ . -.+.+++.+.+.|++||.+.+
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 88764 441 1 137899999999999998876
No 188
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.01 E-value=5.8e-09 Score=83.61 Aligned_cols=111 Identities=15% Similarity=0.226 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHH-hhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC
Q 029836 2 MTSPDEAQFFSMLL-KLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG 78 (187)
Q Consensus 2 ~~~~~~~~~l~~l~-~~~~--~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~ 78 (187)
|+++.+.+-|...+ ...+ +..+||+.||.|..++.++.. ..+|+|||+++++++.|++|.+.+++ ++++|+.+
T Consensus 176 QvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~ 251 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRG 251 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE-
T ss_pred cCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEe
Confidence 55666665555544 3332 348999999999999999976 46899999999999999999999998 68999999
Q ss_pred CchHHHHHHhhc---------ccCCCceeEEEEcCCCcccH-HHHHHH
Q 029836 79 PALPLLDQLIQD---------EKYHGTFDFVFVDADKDNYV-NYHKRL 116 (187)
Q Consensus 79 d~~~~l~~~~~~---------~~~~~~~D~v~~d~~~~~~~-~~~~~~ 116 (187)
++.++...+... ......+|+|++|+++.... ..++.+
T Consensus 252 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 252 DAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp -SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred eccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 887654332100 00023689999999966544 344444
No 189
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.00 E-value=4.4e-09 Score=86.45 Aligned_cols=100 Identities=12% Similarity=0.060 Sum_probs=78.0
Q ss_pred CCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 20 AKNTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~---~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
.+.|+|+|||+|..+...+++. ....+|++||.++.+....++.++.++..++|+++++|+.++-. ..+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCc
Confidence 4679999999999988776654 12469999999999998888888889998999999999987643 468
Q ss_pred eeEEEEcCC-----CcccHHHHHHHHhcccCCeEEE
Q 029836 97 FDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 97 ~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv 127 (187)
.|+|+.-.- .+-.++.+....+.|||||+++
T Consensus 259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 999986532 4566778888889999999998
No 190
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.00 E-value=8.9e-09 Score=79.20 Aligned_cols=88 Identities=17% Similarity=0.063 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+++...+.+...+...+.++|||||||+|..+..+++. ..+++++|+++.+++.+++++.. .++++++++|+.+
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~ 86 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALK 86 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecccc
Confidence 34555555555555667789999999999999999986 36899999999999999988864 2689999999975
Q ss_pred HHHHHhhcccCCCceeEEEEcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
.. ...+|.|+...+
T Consensus 87 ~~---------~~~~d~Vv~NlP 100 (258)
T PRK14896 87 VD---------LPEFNKVVSNLP 100 (258)
T ss_pred CC---------chhceEEEEcCC
Confidence 41 135799988765
No 191
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.99 E-value=5.5e-10 Score=82.93 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=77.7
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCCCce
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYHGTF 97 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~~ 97 (187)
+.+|||||||.|.....+++..+. +.++.++|.+|.+++..+++..... .++.....|.... +..- ...+++
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~----~~~~sv 145 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEP----PEEGSV 145 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCC----CCcCcc
Confidence 347999999999999999987662 2789999999999998887665432 3444444443221 1111 125678
Q ss_pred eEEEEc-----CCCcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 98 DFVFVD-----ADKDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 98 D~v~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
|+|.+- ..++.....++.+.++|||||.|++-|+-.
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 877432 236778999999999999999999988754
No 192
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.98 E-value=2.4e-09 Score=83.63 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=79.4
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCCC
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYHG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~ 95 (187)
+.+.+.|||+|||+|..+.+.|++. ..+|++||.+.-+ +.|++.+..+++.+.+++++|..++. +| .+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--------~e 126 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP--------VE 126 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC--------cc
Confidence 5678999999999999999999874 4799999998755 99999999999988899999999875 33 36
Q ss_pred ceeEEEEcCC--CcccHHHHHHHH----hcccCCeEEEEe
Q 029836 96 TFDFVFVDAD--KDNYVNYHKRLI----ELVKVGGVIGYD 129 (187)
Q Consensus 96 ~~D~v~~d~~--~~~~~~~~~~~~----~~L~~gG~lv~~ 129 (187)
+.|+|+.... .--+...++.+. +.|+|||.++=+
T Consensus 127 KVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 127 KVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred ceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 8999997643 111122222222 689999999643
No 193
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.96 E-value=1.2e-09 Score=81.24 Aligned_cols=111 Identities=11% Similarity=0.145 Sum_probs=77.2
Q ss_pred HHHHHHHHhhcCCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836 8 AQFFSMLLKLINAK-NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ 86 (187)
Q Consensus 8 ~~~l~~l~~~~~~~-~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~ 86 (187)
-.++..++...... .++|+|||+|.-++.+++.+ .+|+++|+++.+++.|++..+...+....++...+..+++..
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~ 97 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG 97 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC
Confidence 35677777776655 88999999997777777764 479999999999998887654433322233333333333321
Q ss_pred HhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCe-EEEE
Q 029836 87 LIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGG-VIGY 128 (187)
Q Consensus 87 ~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~ 128 (187)
+++.|+|.+.-. .-+...++..+.++||+.| ++.+
T Consensus 98 -------e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 98 -------EESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -------CcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 579999986432 3456889999999999777 6655
No 194
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.95 E-value=3.4e-09 Score=77.71 Aligned_cols=84 Identities=24% Similarity=0.255 Sum_probs=72.9
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
....+..|+|.-||.|+.++.++.. ...|+++|++|..+..|+.|++-.|.+++++|++||..++...+... ..
T Consensus 91 ~~~~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~---K~ 164 (263)
T KOG2730|consen 91 ACMNAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD---KI 164 (263)
T ss_pred HhcCcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh---hh
Confidence 3447889999999999999999876 45799999999999999999999999999999999999988877544 45
Q ss_pred ceeEEEEcCC
Q 029836 96 TFDFVFVDAD 105 (187)
Q Consensus 96 ~~D~v~~d~~ 105 (187)
.+|+||..++
T Consensus 165 ~~~~vf~spp 174 (263)
T KOG2730|consen 165 KYDCVFLSPP 174 (263)
T ss_pred eeeeeecCCC
Confidence 6889998764
No 195
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.95 E-value=1.5e-08 Score=78.50 Aligned_cols=100 Identities=14% Similarity=-0.006 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
++...+.+...+...++.+|||||||+|..+..++... .+++++|+++.+++.+++++.. ++++++++|+.++
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~ 99 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV 99 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence 34444444444445567899999999999999999873 4899999999999999887743 5899999999765
Q ss_pred HHHHhhcccCCCceeEEEEcCCCcccHHHHHHHH
Q 029836 84 LDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLI 117 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~ 117 (187)
... .-.+|.|+...+..-....+..+.
T Consensus 100 ~~~-------~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 100 DLS-------ELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred CHH-------HcCcceEEEeCCccchHHHHHHHH
Confidence 211 111477777765333344444444
No 196
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.91 E-value=2.9e-08 Score=78.04 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=85.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHH--HHHcCC----CCceEEEeCCchHHHHHHhhcc
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI--IQKAGV----AHKIDFREGPALPLLDQLIQDE 91 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~--~~~~~~----~~~i~~~~~d~~~~l~~~~~~~ 91 (187)
...+++|-+|.|.|.-.+++.+. |.-.+++-||.+|++++.++++ ++..+. .+|++++..|+..+++..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---- 362 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---- 362 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence 45679999999999999999875 6568999999999999999843 333322 278999999999999887
Q ss_pred cCCCceeEEEEcCC-C-------cccHHHHHHHHhcccCCeEEEEe
Q 029836 92 KYHGTFDFVFVDAD-K-------DNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 92 ~~~~~~D~v~~d~~-~-------~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+.||+|++|-. + -...+|+..+.+.|+++|.+++.
T Consensus 363 --~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 363 --ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred --cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 569999999964 1 12367888889999999999974
No 197
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.91 E-value=3.7e-09 Score=77.62 Aligned_cols=100 Identities=21% Similarity=0.177 Sum_probs=73.3
Q ss_pred HHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcc
Q 029836 14 LLKLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDE 91 (187)
Q Consensus 14 l~~~~~--~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~ 91 (187)
|..+.. +.-|||||||+|.++..+.+. +...+++|+|+.|++.|.+ +.. .-.++.+|.-+-+|--
T Consensus 43 LLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~--~e~----egdlil~DMG~Glpfr---- 109 (270)
T KOG1541|consen 43 LLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVE--REL----EGDLILCDMGEGLPFR---- 109 (270)
T ss_pred HhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHH--hhh----hcCeeeeecCCCCCCC----
Confidence 334444 678999999999999887754 5789999999999999986 221 1346677776555532
Q ss_pred cCCCceeEEEEcCC--------------CcccHHHHHHHHhcccCCeEEEE
Q 029836 92 KYHGTFDFVFVDAD--------------KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 92 ~~~~~~D~v~~d~~--------------~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.++||-++.-.. +.....||..+...|++|+..++
T Consensus 110 --pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 110 --PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred --CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 689999875421 12245678889999999998886
No 198
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.88 E-value=1.5e-08 Score=78.87 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=68.0
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++..+||.+||.|.-+..+++.+++.++|+++|.++++++.+++.+.. ..++++++++..++...+.. + ..++
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~-~--~~~v 91 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE-G--LGKV 91 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc-C--CCcc
Confidence 3456999999999999999999987679999999999999999998865 36899999999887555421 1 2379
Q ss_pred eEEEEcCC
Q 029836 98 DFVFVDAD 105 (187)
Q Consensus 98 D~v~~d~~ 105 (187)
|.|++|..
T Consensus 92 DgIl~DLG 99 (296)
T PRK00050 92 DGILLDLG 99 (296)
T ss_pred CEEEECCC
Confidence 99999854
No 199
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.87 E-value=4.3e-08 Score=75.21 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
.+...+-+-..+...++.+|||||||+|..+..+++.. .+++++|+++.+++.+++++.. ..+++++++|+.+.
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKV 87 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcC
Confidence 33444434444445567899999999999999999874 4699999999999999887743 36899999999764
Q ss_pred HHHHhhcccCCCcee---EEEEcCCCcccHHHHHHHH
Q 029836 84 LDQLIQDEKYHGTFD---FVFVDADKDNYVNYHKRLI 117 (187)
Q Consensus 84 l~~~~~~~~~~~~~D---~v~~d~~~~~~~~~~~~~~ 117 (187)
.. ..+| +|+.+.+..-....+..+.
T Consensus 88 ~~---------~~~d~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 88 DL---------PDFPKQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred Ch---------hHcCCcceEEEcCChhhHHHHHHHHh
Confidence 22 1234 6776655333344444444
No 200
>PRK04148 hypothetical protein; Provisional
Probab=98.86 E-value=5.8e-08 Score=66.71 Aligned_cols=103 Identities=10% Similarity=0.059 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHH
Q 029836 7 EAQFFSMLLKLINAKNTMEIGVFTGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (187)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~ 85 (187)
.+++|.......+++++||||||+|. .+..|++. +..|+++|+++..++.++++ .++++.+|..+.-.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence 44555554444456889999999997 66666643 57999999999988777653 36788888876544
Q ss_pred HHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 86 QLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 86 ~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+ -+.+|+|+.--++.+....+..+.+.+ |.-+++
T Consensus 73 ~~------y~~a~liysirpp~el~~~~~~la~~~--~~~~~i 107 (134)
T PRK04148 73 EI------YKNAKLIYSIRPPRDLQPFILELAKKI--NVPLII 107 (134)
T ss_pred HH------HhcCCEEEEeCCCHHHHHHHHHHHHHc--CCCEEE
Confidence 44 467899997665555555555555433 444443
No 201
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.85 E-value=1.7e-08 Score=73.99 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=83.9
Q ss_pred HHHHHHHHHhhcC-CC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCce-EEEeCCchHH
Q 029836 7 EAQFFSMLLKLIN-AK-NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKI-DFREGPALPL 83 (187)
Q Consensus 7 ~~~~l~~l~~~~~-~~-~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~~ 83 (187)
..-++..|....+ .. +|||||||+|-=+.+++..+| ..+-...|.++......+..+...+++ |+ .-+.-|..+.
T Consensus 11 k~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~-Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLP-NVRPPLALDVSAP 88 (204)
T ss_pred HhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCc-ccCCCeEeecCCC
Confidence 3445555555443 33 499999999999999999998 688888999999988888888887763 32 1122232221
Q ss_pred -HHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 84 -LDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 84 -l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
.+.........++||.||.-.. ......+|+.+.++|++||.|++=..+
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 1111000001468999997532 345678899999999999999874433
No 202
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.81 E-value=3.5e-08 Score=78.22 Aligned_cols=107 Identities=16% Similarity=0.165 Sum_probs=70.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC---------CCCceEEEeCCchH-HHHHHh
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG---------VAHKIDFREGPALP-LLDQLI 88 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~---------~~~~i~~~~~d~~~-~l~~~~ 88 (187)
++.+|||+|||-|.-..=+..+ . -..++|+|+++..++.|+++.++.. ..-...++.+|... .+....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-K-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 5679999999988855555544 2 4799999999999999999994322 11245777777653 222221
Q ss_pred hcccCCCceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEEe
Q 029836 89 QDEKYHGTFDFVFVDAD-------KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 89 ~~~~~~~~~D~v~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.. ...+||+|=+.-. .+....++..+...|+|||++|..
T Consensus 140 ~~--~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 140 PP--RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp SS--TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cc--cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 0258999976643 334567999999999999999863
No 203
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=3.9e-08 Score=80.31 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEE
Q 029836 1 MMTSPDEAQFFSMLLK----LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFR 76 (187)
Q Consensus 1 ~~~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~ 76 (187)
+|++....+.|+..+. +...+.++|+.||+|.+++.+++. ..+|++||++++.++.|++|...+|. .|.+|+
T Consensus 361 FQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi 436 (534)
T KOG2187|consen 361 FQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGI-SNATFI 436 (534)
T ss_pred hccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCc-cceeee
Confidence 3566667777777664 345578999999999999999876 47899999999999999999999999 799999
Q ss_pred eCCchHHHHHHhhcccCCCcee-EEEEcCCCccc-HHHHHHHHhcccCCeEEE
Q 029836 77 EGPALPLLDQLIQDEKYHGTFD-FVFVDADKDNY-VNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 77 ~~d~~~~l~~~~~~~~~~~~~D-~v~~d~~~~~~-~~~~~~~~~~L~~gG~lv 127 (187)
+|.+++.++.+.... -++-+ ++++|+++... ..++..+++.-++.-.+.
T Consensus 437 ~gqaE~~~~sl~~~~--~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvy 487 (534)
T KOG2187|consen 437 VGQAEDLFPSLLTPC--CDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVY 487 (534)
T ss_pred ecchhhccchhcccC--CCCCceEEEECCCcccccHHHHHHHHhccCccceEE
Confidence 999999888875332 12446 77888885554 445555544433444443
No 204
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.80 E-value=4.9e-08 Score=75.10 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=67.7
Q ss_pred CCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-HcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 20 AKNTMEIGVFTGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQ-KAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 20 ~~~vLeiG~g~G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
|++|+=||||.=- +++.+++....+..++++|+++++.+.+++.++ ..++..+++|+.+|..+.... -..|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-------l~~~ 193 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-------LKEY 193 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-------cccC
Confidence 5699999999544 556666544446789999999999999999888 567778999999998765332 2579
Q ss_pred eEEEEcCC----CcccHHHHHHHHhcccCCeEEEEe
Q 029836 98 DFVFVDAD----KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 98 D~v~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+|++.+- ++.-.+.++.+.+.+++|..+++-
T Consensus 194 DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 194 DVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred CEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 99999875 347789999999999999999974
No 205
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=98.79 E-value=7.8e-08 Score=73.60 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=111.9
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC---CCceEEEeCCchHHHHHHhhc
Q 029836 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV---AHKIDFREGPALPLLDQLIQD 90 (187)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~l~~~~~~ 90 (187)
++++.+|+++|-||-|.|...+..+++ +.-..+.-+|++...++..+++++..-. .+++.++.||...++....
T Consensus 116 l~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-- 192 (337)
T KOG1562|consen 116 LCSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-- 192 (337)
T ss_pred cccCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc--
Confidence 456778999999999999999998877 5347899999999999999999986633 2789999999999988774
Q ss_pred ccCCCceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEE-eCcCCCccccCCCCCCchhhhhhHHHHHHHHHHH
Q 029836 91 EKYHGTFDFVFVDADK-------DNYVNYHKRLIELVKVGGVIGY-DNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKA 162 (187)
Q Consensus 91 ~~~~~~~D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (187)
.++||+|+.|.+. .....+++.+.+.||++|+++. .+..|- ....-...+.|-..
T Consensus 193 ---~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl--------------~~~~i~e~r~~~~~ 255 (337)
T KOG1562|consen 193 ---ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWL--------------HLDYIKEGRSFCYV 255 (337)
T ss_pred ---cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehH--------------HHHHHHHHHHhHHH
Confidence 5799999999761 2235688889999999999985 333331 12344566777777
Q ss_pred HhcCCCeeEEEeec
Q 029836 163 LAVDPRIEICQISI 176 (187)
Q Consensus 163 ~~~~~~~~~~~~p~ 176 (187)
+.....+-.+..|+
T Consensus 256 ~f~~t~ya~ttvPT 269 (337)
T KOG1562|consen 256 IFDLTAYAITTVPT 269 (337)
T ss_pred hcCccceeeecCCC
Confidence 88777788888774
No 206
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=4.8e-08 Score=67.28 Aligned_cols=77 Identities=25% Similarity=0.327 Sum_probs=64.0
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
..++.++|+|||.|..+...+ .+....++++|++|++++.+..|..+..+ ++.+.++|..+.... .+.|
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~-------~g~f 115 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELK-------GGIF 115 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhcc-------CCeE
Confidence 467899999999999874433 45468899999999999999999998776 678999998776543 5789
Q ss_pred eEEEEcCC
Q 029836 98 DFVFVDAD 105 (187)
Q Consensus 98 D~v~~d~~ 105 (187)
|.++++++
T Consensus 116 DtaviNpp 123 (185)
T KOG3420|consen 116 DTAVINPP 123 (185)
T ss_pred eeEEecCC
Confidence 99999987
No 207
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=4.8e-07 Score=68.95 Aligned_cols=86 Identities=15% Similarity=0.066 Sum_probs=65.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCCC
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYHG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~ 95 (187)
..+..+|||||+|.|..|..+++. ..+|+++|+++.++...++.+. ..++++++++|+..+ ++.+ .
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l------~- 94 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL------A- 94 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh------c-
Confidence 445679999999999999999987 4689999999999999888775 237999999999875 3332 1
Q ss_pred ceeEEEEcCCCcccHHHHHH
Q 029836 96 TFDFVFVDADKDNYVNYHKR 115 (187)
Q Consensus 96 ~~D~v~~d~~~~~~~~~~~~ 115 (187)
.++.|+.+.+..-...++..
T Consensus 95 ~~~~vVaNlPY~Isspii~k 114 (259)
T COG0030 95 QPYKVVANLPYNISSPILFK 114 (259)
T ss_pred CCCEEEEcCCCcccHHHHHH
Confidence 57888888764333343333
No 208
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.75 E-value=7e-08 Score=71.52 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=68.2
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEE
Q 029836 23 TMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFV 102 (187)
Q Consensus 23 vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~ 102 (187)
|.||||-.|+...++++... ..+++++|+++..++.|+++++..++.++++++.+|..+.++. .+..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence 68999999999999998743 5789999999999999999999999999999999999887763 233788887
Q ss_pred cCC-CcccHHHHHHHHhcccCCeEEEE
Q 029836 103 DAD-KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 103 d~~-~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+. -.-..+.++.....++....+|+
T Consensus 73 AGMGG~lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 73 AGMGGELIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp EEE-HHHHHHHHHHTGGGGTT--EEEE
T ss_pred ecCCHHHHHHHHHhhHHHhccCCeEEE
Confidence 653 22344455554444444444443
No 209
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.73 E-value=7.1e-08 Score=73.21 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHh---hCC-CCCEEEEEeCCc--------------------
Q 029836 3 TSPDEAQFFSMLLKL----INAKNTMEIGVFTGYSLLATAL---AIP-DDGKILALDITK-------------------- 54 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~----~~~~~vLeiG~g~G~~~~~l~~---~~~-~~~~v~~vd~~~-------------------- 54 (187)
++......|+.++.. .-|..++|+||..|.++..++. .+. .+-++++.|.-+
T Consensus 54 ~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~ 133 (248)
T PF05711_consen 54 IGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHE 133 (248)
T ss_dssp SHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCG
T ss_pred cCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhh
Confidence 344455555555543 3467999999999998876543 222 235788888411
Q ss_pred ------hHHHHHHHHHHHcCC-CCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-CcccHHHHHHHHhcccCCeEE
Q 029836 55 ------EHYEKGLPIIQKAGV-AHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-KDNYVNYHKRLIELVKVGGVI 126 (187)
Q Consensus 55 ------~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-~~~~~~~~~~~~~~L~~gG~l 126 (187)
...+..++++++.++ .++++++.|...+.++... .+++-++.+|++ .+.....++.+.+.|.+||+|
T Consensus 134 ~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p-----~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 134 YNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAP-----IERIALLHLDCDLYESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp CCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-T-----T--EEEEEE---SHHHHHHHHHHHGGGEEEEEEE
T ss_pred cccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCC-----CccEEEEEEeccchHHHHHHHHHHHhhcCCCeEE
Confidence 134556666766665 4689999999999888653 467889999987 667788999999999999999
Q ss_pred EEeCcCC
Q 029836 127 GYDNTLW 133 (187)
Q Consensus 127 v~~~~~~ 133 (187)
++||+..
T Consensus 209 i~DDY~~ 215 (248)
T PF05711_consen 209 IFDDYGH 215 (248)
T ss_dssp EESSTTT
T ss_pred EEeCCCC
Confidence 9999765
No 210
>PRK10742 putative methyltransferase; Provisional
Probab=98.73 E-value=1.4e-07 Score=71.29 Aligned_cols=88 Identities=9% Similarity=0.078 Sum_probs=72.8
Q ss_pred HHHHHHHhhcCCC--EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc------CC--CCceEEEeC
Q 029836 9 QFFSMLLKLINAK--NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA------GV--AHKIDFREG 78 (187)
Q Consensus 9 ~~l~~l~~~~~~~--~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~------~~--~~~i~~~~~ 78 (187)
+.|...+...++. +|||..+|.|..+..++.. +++|+++|-++......+++++.. +. ..+++++++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4455555555655 8999999999999999975 577999999999999999999985 22 257999999
Q ss_pred CchHHHHHHhhcccCCCceeEEEEcCC
Q 029836 79 PALPLLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 79 d~~~~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
|+.+++... .++||+||+|+.
T Consensus 153 da~~~L~~~------~~~fDVVYlDPM 173 (250)
T PRK10742 153 SSLTALTDI------TPRPQVVYLDPM 173 (250)
T ss_pred cHHHHHhhC------CCCCcEEEECCC
Confidence 999999875 458999999987
No 211
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.72 E-value=4.4e-08 Score=70.01 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=60.9
Q ss_pred EEEeCCchHHHHHHHHHHHc--CCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccC
Q 029836 48 LALDITKEHYEKGLPIIQKA--GVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKV 122 (187)
Q Consensus 48 ~~vd~~~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~ 122 (187)
+++|+++++++.|+++.+.. +...+++++++|+.+. +-- +++||+|++... ..+....++++.+.|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~~------~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PFD------DCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CCC------CCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence 48999999999998776532 2235799999999764 311 568999987643 45678899999999999
Q ss_pred CeEEEEeCcC
Q 029836 123 GGVIGYDNTL 132 (187)
Q Consensus 123 gG~lv~~~~~ 132 (187)
||.+++.+..
T Consensus 74 GG~l~i~d~~ 83 (160)
T PLN02232 74 GSRVSILDFN 83 (160)
T ss_pred CeEEEEEECC
Confidence 9999987764
No 212
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.68 E-value=1e-07 Score=74.27 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=79.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.+.+.|||+|||+|..+.+.+.+. ..+|.+||.+ ++.+.|++.++.+.+.++|.++.|..++.- + .++.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--L------PEk~ 244 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--L------PEKV 244 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc--C------chhc
Confidence 357899999999999998888763 4799999996 488899999999999999999999987751 1 4688
Q ss_pred eEEEEcCC-----CcccHHHHHHHHhcccCCeEEE
Q 029836 98 DFVFVDAD-----KDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 98 D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv 127 (187)
|+++..+. .+...+-+-.+++.|+|.|.+.
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 99998754 3444444555678999999886
No 213
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.67 E-value=2.2e-07 Score=68.91 Aligned_cols=109 Identities=19% Similarity=0.214 Sum_probs=67.1
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-------HcCC-CCceEEEeCCchHH--
Q 029836 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ-------KAGV-AHKIDFREGPALPL-- 83 (187)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~-- 83 (187)
.+...+....+|+|||.|......+...+ ..+.+|||+.+...+.|+...+ ..|. ..++++.++|..+.
T Consensus 37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF 115 (205)
T ss_dssp HTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred HhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence 34556678999999999999888776554 5679999999998877765443 3333 35788899998653
Q ss_pred HHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEe
Q 029836 84 LDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.... -..-|+||++.. .+.....+......||+|..+|-.
T Consensus 116 ~~~~------~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 116 VKDI------WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HHHH------GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred Hhhh------hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 2332 135699999865 344555666777889999998853
No 214
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.67 E-value=2.3e-07 Score=70.29 Aligned_cols=83 Identities=18% Similarity=0.099 Sum_probs=68.4
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhc
Q 029836 11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD 90 (187)
Q Consensus 11 l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~ 90 (187)
|..-+...++..|||||.|+|..|.-+++. +.+|+++|+++.++....+.++....+.+.++++||....-
T Consensus 50 I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d------ 120 (315)
T KOG0820|consen 50 IVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD------ 120 (315)
T ss_pred HHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC------
Confidence 333345567789999999999999999987 57999999999999999999988777789999999987531
Q ss_pred ccCCCceeEEEEcCC
Q 029836 91 EKYHGTFDFVFVDAD 105 (187)
Q Consensus 91 ~~~~~~~D~v~~d~~ 105 (187)
...||.++.+.+
T Consensus 121 ---~P~fd~cVsNlP 132 (315)
T KOG0820|consen 121 ---LPRFDGCVSNLP 132 (315)
T ss_pred ---CcccceeeccCC
Confidence 246899988655
No 215
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=98.65 E-value=8.9e-07 Score=63.85 Aligned_cols=147 Identities=20% Similarity=0.139 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~---~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~ 80 (187)
+|.-.-.++.|+...+|..|+|+|+..|.+++++|... +...+|+++|++-...+-+... .+++.|+.+++
T Consensus 54 ~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss 127 (237)
T COG3510 54 SPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSS 127 (237)
T ss_pred CHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCC
Confidence 44555677888889999999999999999999988643 2236899999987654322111 27899999988
Q ss_pred hHHH--HH--HhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHH
Q 029836 81 LPLL--DQ--LIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRD 154 (187)
Q Consensus 81 ~~~l--~~--~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (187)
.+.. .+ .+++ .-+-=+|+.|.+ .++....++...++|.-|-++++.|....++.. |..+ -+.....++
T Consensus 128 ~dpai~eqi~~~~~---~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~-~~~p--~~~g~gP~~ 201 (237)
T COG3510 128 TDPAIAEQIRRLKN---EYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG-PVLP--WRFGGGPYE 201 (237)
T ss_pred CCHHHHHHHHHHhc---CCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCC-cccc--hhcCCChHH
Confidence 6531 11 1221 112345566665 456778888889999999999999888877653 1211 123455666
Q ss_pred HHHHHHHH
Q 029836 155 FVQELNKA 162 (187)
Q Consensus 155 ~~~~~~~~ 162 (187)
++.+|.+.
T Consensus 202 AVe~ylr~ 209 (237)
T COG3510 202 AVEAYLRE 209 (237)
T ss_pred HHHHHHHh
Confidence 77666433
No 216
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.65 E-value=4.5e-07 Score=68.64 Aligned_cols=134 Identities=13% Similarity=0.015 Sum_probs=87.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
+..++||||+|.|..|..++..+ .+|++.|.|+.|.... ++. .++++. ..++ ..- +.+||
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL----~~k----g~~vl~--~~~w-~~~------~~~fD 153 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRL----SKK----GFTVLD--IDDW-QQT------DFKFD 153 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHH----HhC----CCeEEe--hhhh-hcc------CCceE
Confidence 46789999999999999999775 4699999999986543 333 334442 2222 221 46899
Q ss_pred EEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCcc-ccCCC--C-CC---chhhhhhHHHHHHHHHHHHhcCCC
Q 029836 99 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS-VVAPP--D-AD---LDEHFLYLRDFVQELNKALAVDPR 168 (187)
Q Consensus 99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~-~~~~~--~-~~---~~~~~~~~~~~~~~~~~~~~~~~~ 168 (187)
+|-+-.- .......++.+++.|+|+|.+++.=++.-.+ +.... + .+ .+-....+-+.+..+. .+....+
T Consensus 154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~G 232 (265)
T PF05219_consen 154 VISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAG 232 (265)
T ss_pred EEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcC
Confidence 9976543 4567789999999999999999876665433 22211 1 11 1111234556666777 5556666
Q ss_pred eeEEE
Q 029836 169 IEICQ 173 (187)
Q Consensus 169 ~~~~~ 173 (187)
|+...
T Consensus 233 F~v~~ 237 (265)
T PF05219_consen 233 FEVER 237 (265)
T ss_pred CEEEE
Confidence 65433
No 217
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.61 E-value=1.4e-07 Score=71.08 Aligned_cols=94 Identities=12% Similarity=0.191 Sum_probs=58.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceE-EEeCCchHH-HHHHhhcccCCC
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKID-FREGPALPL-LDQLIQDEKYHG 95 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~-l~~~~~~~~~~~ 95 (187)
.+.+++||+|||+|.++..+++. + ..+|+++|+++.++.. .+++. +++. +...+.... ...... +-.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~---~l~~~---~~v~~~~~~ni~~~~~~~~~~---d~~ 142 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE---KLRQD---ERVKVLERTNIRYVTPADIFP---DFA 142 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH---HHhcC---CCeeEeecCCcccCCHhHcCC---Cce
Confidence 35679999999999999999986 3 4789999999977654 12221 2322 222222211 111100 124
Q ss_pred ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+|++|+.. ...+..+.++|++ |.+++
T Consensus 143 ~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 143 TFDVSFISL-----ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred eeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence 688888743 3467888889999 66553
No 218
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.57 E-value=1.1e-06 Score=64.65 Aligned_cols=106 Identities=18% Similarity=0.220 Sum_probs=82.0
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++.+||++|-|.|.....+-++-| .+-+-+|.+|..++..++.-- ...+|+.+..|..++.++.+. ++.|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw--~ek~nViil~g~WeDvl~~L~-----d~~F 170 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGW--REKENVIILEGRWEDVLNTLP-----DKHF 170 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhccc--ccccceEEEecchHhhhcccc-----ccCc
Confidence 6788999999999998888777633 455667999988765554322 223688999999999988885 5679
Q ss_pred eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
|-|+-|.. .++...+.+.+.++|||+|++-+=|-+
T Consensus 171 DGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 171 DGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred ceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 99999976 455667888889999999999764443
No 219
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.57 E-value=7.7e-07 Score=77.49 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhC---CC-------------------------------------
Q 029836 5 PDEAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAI---PD------------------------------------- 43 (187)
Q Consensus 5 ~~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~---~~------------------------------------- 43 (187)
+....-+-.++.. .+...++|-+||+|.+.++.+... ++
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 3334444444444 346799999999999999876521 11
Q ss_pred -CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC
Q 029836 44 -DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 44 -~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
..+++|+|+++.+++.|++|+..+|+.+++++.++|+.+...... .+++|+|+.+++
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~-----~~~~d~IvtNPP 312 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP-----KGPTGLVISNPP 312 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc-----cCCCCEEEECCC
Confidence 136999999999999999999999998889999999976532210 257999999987
No 220
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.55 E-value=1.3e-06 Score=64.52 Aligned_cols=104 Identities=16% Similarity=0.232 Sum_probs=80.2
Q ss_pred HHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhh
Q 029836 11 FSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ 89 (187)
Q Consensus 11 l~~l~~~~-~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~ 89 (187)
|..++... +..++.||||-.++..+++.+..+ ...+++.|+++..++.|.++++++++.++++...+|....+..
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~--- 82 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL--- 82 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc---
Confidence 34444333 344599999999999999998865 7899999999999999999999999999999999999655432
Q ss_pred cccCCCceeEEEEcCC-CcccHHHHHHHHhcccC
Q 029836 90 DEKYHGTFDFVFVDAD-KDNYVNYHKRLIELVKV 122 (187)
Q Consensus 90 ~~~~~~~~D~v~~d~~-~~~~~~~~~~~~~~L~~ 122 (187)
++.+|.+++.+. -.-..+++++-.+.|+.
T Consensus 83 ----~d~~d~ivIAGMGG~lI~~ILee~~~~l~~ 112 (226)
T COG2384 83 ----EDEIDVIVIAGMGGTLIREILEEGKEKLKG 112 (226)
T ss_pred ----cCCcCEEEEeCCcHHHHHHHHHHhhhhhcC
Confidence 457999998764 23345556665555543
No 221
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.55 E-value=5.2e-07 Score=72.21 Aligned_cols=111 Identities=20% Similarity=0.237 Sum_probs=88.3
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
...++.+|||+.+..|.=|.++|.-+...+.|++.|.+...+...++|+...|. .+..+...|..++-.... .+
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~-----~~ 311 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEF-----PG 311 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCccccccccc-----Cc
Confidence 345678999999999999999998887679999999999999999999999998 566777777765532221 45
Q ss_pred ceeEEEEcCCCcc-------------------------cHHHHHHHHhcccCCeEEEEeCcC
Q 029836 96 TFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 96 ~~D~v~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+||-|++|++... ..+.+..+..++++||+||.+.+.
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 8999999976211 145677778999999999976553
No 222
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.52 E-value=3.9e-07 Score=66.32 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=62.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhccc-CCC
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEK-YHG 95 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~-~~~ 95 (187)
++.++||+||+.|.++..+++...+..+|+++|+.+.. .. +.+.++++|..+. ...+..... ..+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PL-QNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cc-cceeeeecccchhhHHHhhhhhcccccc
Confidence 34799999999999999999886445899999998761 11 4566666665431 112111100 025
Q ss_pred ceeEEEEcCC--------Ccc------cHHHHHHHHhcccCCeEEEEe
Q 029836 96 TFDFVFVDAD--------KDN------YVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 96 ~~D~v~~d~~--------~~~------~~~~~~~~~~~L~~gG~lv~~ 129 (187)
++|+|++|.. .+. ....+..+...|++||.+|+.
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 8999999983 111 133445556789999988764
No 223
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.52 E-value=6.4e-07 Score=72.28 Aligned_cols=106 Identities=20% Similarity=0.194 Sum_probs=81.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC-ceEEEeCCchHHHHHHhhcccCCCce
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-KIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
++.++||.=+|+|.=++.++..++...+|++-|+++++.+..++|++.+++.. ++++.+.|+...+... ...|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~------~~~f 122 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR------QERF 122 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS------TT-E
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc------cccC
Confidence 34589999999999888888876645799999999999999999999999987 7999999998776422 5789
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
|+|=+|+. .....|++.+.+.++.||+|.+..+
T Consensus 123 D~IDlDPf-GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 123 DVIDLDPF-GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EEEEE--S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CEEEeCCC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence 99999974 4456899999999999999998655
No 224
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=4.9e-06 Score=61.23 Aligned_cols=101 Identities=21% Similarity=0.197 Sum_probs=72.3
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCc
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGT 96 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~ 96 (187)
+...|+|+|+..|.|+..+++.++++.+|+++|+.|-. .-+++.++++|+.+ .+..+.... ....
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l-~~~~ 111 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEAL-GGAP 111 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHc-CCCC
Confidence 56899999999999999999988767889999998742 11568999998754 333332221 1335
Q ss_pred eeEEEEcCCC--------ccc------HHHHHHHHhcccCCeEEEEeCcC
Q 029836 97 FDFVFVDADK--------DNY------VNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 97 ~D~v~~d~~~--------~~~------~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+|+|+.|..+ .++ ...++.+...|++||.+++....
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 7999999763 111 23455666899999999986543
No 225
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.51 E-value=2.3e-06 Score=63.40 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=75.6
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++.+||-+|+++|.....++...++++.|.+||.++...+..-...++. +|+--+.+|+..... ... .-+..
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~-Y~~---lv~~V 144 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEK-YRM---LVEMV 144 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGG-GTT---TS--E
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHH-hhc---ccccc
Confidence 34679999999999999999998877899999999998776655544443 688888888864321 110 14689
Q ss_pred eEEEEcCCC-cccHHHHHHHHhcccCCeEEEE
Q 029836 98 DFVFVDADK-DNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 98 D~v~~d~~~-~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+||.|-.. .+..-+...+...||+||.+++
T Consensus 145 DvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 145 DVIFQDVAQPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp EEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred cEEEecCCChHHHHHHHHHHHhhccCCcEEEE
Confidence 999999774 4455667788889999998876
No 226
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.49 E-value=9.6e-07 Score=69.71 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC------CCCCEEEEEeCCchHHHHHHHHHHHcCCCC-ceEE
Q 029836 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAI------PDDGKILALDITKEHYEKGLPIIQKAGVAH-KIDF 75 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~------~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-~i~~ 75 (187)
++....+++..++...+..+|+|-.||+|.....+.+.+ ....+++|+|+++..+..++-++.-.+... +..+
T Consensus 30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp --HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 456677888888877777799999999999988877643 125789999999999999998887665533 3468
Q ss_pred EeCCchHHHHHHhhcccCCCceeEEEEcCCC--c----------------------ccHHHHHHHHhcccCCeEEEE
Q 029836 76 REGPALPLLDQLIQDEKYHGTFDFVFVDADK--D----------------------NYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 76 ~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~--~----------------------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..+|+....... ....||+|+..++. . ....|+..+...|++||.+++
T Consensus 110 ~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 110 IQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp EES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccccccccccc-----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 888875432211 03689999998761 1 002477888999999997643
No 227
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.48 E-value=2e-06 Score=59.54 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=59.2
Q ss_pred EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC------------CcccHHHH
Q 029836 46 KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD------------KDNYVNYH 113 (187)
Q Consensus 46 ~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~------------~~~~~~~~ 113 (187)
+|+++|+.+++++.+++.+++.++.+++++++.+=.....-+. .+++|+++.+-. .+.....+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 6899999999999999999999998899999866544433231 237999987622 23346788
Q ss_pred HHHHhcccCCeEEEEeCcCCCcc
Q 029836 114 KRLIELVKVGGVIGYDNTLWGGS 136 (187)
Q Consensus 114 ~~~~~~L~~gG~lv~~~~~~~~~ 136 (187)
+.+.++|++||++++. .+.|+
T Consensus 76 ~~al~lL~~gG~i~iv--~Y~GH 96 (140)
T PF06962_consen 76 EAALELLKPGGIITIV--VYPGH 96 (140)
T ss_dssp HHHHHHEEEEEEEEEE--E--ST
T ss_pred HHHHHhhccCCEEEEE--EeCCC
Confidence 9999999999999873 44443
No 228
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.46 E-value=1.3e-06 Score=67.78 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=76.8
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC-----ceEEEeCCchH-HHHHHhhcc
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-----KIDFREGPALP-LLDQLIQDE 91 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~-~l~~~~~~~ 91 (187)
.+...++++|||-|+-.+-+-++- -+.++|+|+.+-.+..|+++.+...... .+.|+.+|... .+..+...
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~- 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF- 192 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC-
Confidence 356789999999999777666542 3789999999999999998888654322 36788888754 34433322
Q ss_pred cCCCceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEE
Q 029836 92 KYHGTFDFVFVDAD-------KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 92 ~~~~~~D~v~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+.+||+|-+.-. .+....++..+...|+|||++|-
T Consensus 193 -~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 193 -KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred -CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 1344999954321 34456788899999999999993
No 229
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.44 E-value=1.1e-06 Score=64.51 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HH
Q 029836 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LD 85 (187)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~ 85 (187)
...+++.|....+...|.|+|||.+.++.. ++....|.+.|.-.. +-.+..+|.... ++
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~----~~~~~~V~SfDLva~----------------n~~Vtacdia~vPL~ 119 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKA----VPNKHKVHSFDLVAP----------------NPRVTACDIANVPLE 119 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S----------------STTEEES-TTS-S--
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHh----cccCceEEEeeccCC----------------CCCEEEecCccCcCC
Confidence 455677776665667999999999887643 443457999998642 223556777442 32
Q ss_pred HHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHHH
Q 029836 86 QLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKAL 163 (187)
Q Consensus 86 ~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (187)
+++.|+++.... -.++..++.++.+.||+||.|.+.++..+= ..+..|.+.+
T Consensus 120 --------~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf------------------~~~~~F~~~~ 173 (219)
T PF05148_consen 120 --------DESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRF------------------ENVKQFIKAL 173 (219)
T ss_dssp --------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-------------------S-HHHHHHHH
T ss_pred --------CCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccC------------------cCHHHHHHHH
Confidence 679999998765 678999999999999999999998765320 1457777776
Q ss_pred hcCCCeeEEE
Q 029836 164 AVDPRIEICQ 173 (187)
Q Consensus 164 ~~~~~~~~~~ 173 (187)
..- +|....
T Consensus 174 ~~~-GF~~~~ 182 (219)
T PF05148_consen 174 KKL-GFKLKS 182 (219)
T ss_dssp HCT-TEEEEE
T ss_pred HHC-CCeEEe
Confidence 643 554443
No 230
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.43 E-value=7.9e-07 Score=64.03 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=77.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
....+.|+|+|+|..+...+++ ..+|+++|.+|...+.|.+|+.-.|. .+++++.+|+.+.- .+..|
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~---------fe~AD 98 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYD---------FENAD 98 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEeccccccc---------ccccc
Confidence 3478999999999998877765 46999999999999999999977776 79999999998652 23468
Q ss_pred EEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeC
Q 029836 99 FVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 99 ~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+|++-.- .+.....+..+...||..+.++-..
T Consensus 99 vvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 99 VVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred eeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHH
Confidence 8875432 3445567777778888888886433
No 231
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.43 E-value=3e-06 Score=59.23 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=55.9
Q ss_pred HHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHHcC--CCCceEEEeC
Q 029836 8 AQFFSMLLKL----INAKNTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQKAG--VAHKIDFREG 78 (187)
Q Consensus 8 ~~~l~~l~~~----~~~~~vLeiG~g~G~~~~~l~~~~---~~~~~v~~vd~~~~~~~~a~~~~~~~~--~~~~i~~~~~ 78 (187)
.+++..++.. .++.+|+|+|||.|+.+..++..+ ..+.+|++||.++...+.+.+..+..+ ...+.++..+
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG 89 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence 3444555444 667899999999999999999822 136899999999999999999888876 3345666665
Q ss_pred Cch
Q 029836 79 PAL 81 (187)
Q Consensus 79 d~~ 81 (187)
+..
T Consensus 90 ~~~ 92 (141)
T PF13679_consen 90 DIA 92 (141)
T ss_pred chh
Confidence 543
No 232
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.41 E-value=3.7e-06 Score=67.20 Aligned_cols=117 Identities=19% Similarity=0.205 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC---CC----------------------------C-------EE
Q 029836 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIP---DD----------------------------G-------KI 47 (187)
Q Consensus 6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~---~~----------------------------~-------~v 47 (187)
....-|-.++...+...++|-=||+|.+.++.|...+ |+ + .+
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 3344444555555667899999999999999775432 10 1 37
Q ss_pred EEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCC------c-----ccHHHHHHH
Q 029836 48 LALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADK------D-----NYVNYHKRL 116 (187)
Q Consensus 48 ~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~------~-----~~~~~~~~~ 116 (187)
+|+|+++.+++.|+.|.+..|+.+.|+|.++|+..+-+. .+.+|+|+.+++. + -|..+.+.+
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~l 330 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREFGRTL 330 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHH
Confidence 899999999999999999999999999999999655331 1589999999871 1 244555566
Q ss_pred HhcccCCeEEEEe
Q 029836 117 IELVKVGGVIGYD 129 (187)
Q Consensus 117 ~~~L~~gG~lv~~ 129 (187)
.+.++.-+..|+.
T Consensus 331 k~~~~~ws~~v~t 343 (381)
T COG0116 331 KRLLAGWSRYVFT 343 (381)
T ss_pred HHHhcCCceEEEE
Confidence 6777777777763
No 233
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.39 E-value=3.1e-06 Score=71.52 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHhhc-------CCCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCchHHHHHHHHHHHcC
Q 029836 3 TSPDEAQFFSMLLKLI-------NAKNTMEIGVFTGYSLLATALAIPD-------DGKILALDITKEHYEKGLPIIQKAG 68 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~~-------~~~~vLeiG~g~G~~~~~l~~~~~~-------~~~v~~vd~~~~~~~~a~~~~~~~~ 68 (187)
+++...++|-.++... ...+|||.+||+|.....++..++. ...++++|+++..+..++.++...+
T Consensus 8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 3455555555544221 3469999999999999998876531 2578999999999999999998775
Q ss_pred CCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC
Q 029836 69 VAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 69 ~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
. ..+.+...|........... ..+.||+|+..++
T Consensus 88 ~-~~~~i~~~d~l~~~~~~~~~--~~~~fD~IIgNPP 121 (524)
T TIGR02987 88 L-LEINVINFNSLSYVLLNIES--YLDLFDIVITNPP 121 (524)
T ss_pred C-CCceeeeccccccccccccc--ccCcccEEEeCCC
Confidence 2 23555555544321101000 1358999999876
No 234
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.38 E-value=1.7e-06 Score=60.29 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=48.9
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~ 80 (187)
.++||||+.|.++.+++...+ ..+++++|+++..++.++++++.++. +++++++...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~-~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNL-PNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEEeee
Confidence 489999999999999998765 57999999999999999999998877 4577776543
No 235
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.38 E-value=3.2e-06 Score=61.59 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=77.5
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC------CCceEEEeCCchHHHHHHhhcccC
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV------AHKIDFREGPALPLLDQLIQDEKY 93 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~------~~~i~~~~~d~~~~l~~~~~~~~~ 93 (187)
.-.+.|||||.|.....++..+| +..+.++|+.....+..++.+....- -.++-+...++..+++.+...
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k--- 136 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK--- 136 (249)
T ss_pred cceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh---
Confidence 35689999999999999999988 78899999999999998888887652 257888889999888887543
Q ss_pred CCcee--EEEE-cCC-C-------cccHHHHHHHHhcccCCeEEEE
Q 029836 94 HGTFD--FVFV-DAD-K-------DNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 94 ~~~~D--~v~~-d~~-~-------~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
++.. +.+. |+. + --....+.+..-+|++||.+..
T Consensus 137 -gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 137 -GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred -cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 3333 2222 221 0 1124567777789999998864
No 236
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.35 E-value=1.2e-05 Score=63.57 Aligned_cols=108 Identities=10% Similarity=0.043 Sum_probs=77.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHHcCCCCceEE--EeCCchHHHHHHhhcccC
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDF--REGPALPLLDQLIQDEKY 93 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~---~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~l~~~~~~~~~ 93 (187)
++..++|+|||+|.=+..+++++.+ ..+++++|+|.+.++.+.+.+..... +.+++ +.+|..+.+..+.... .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~-~ 153 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPE-N 153 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccc-c
Confidence 3458999999999988888877742 36799999999999999999983333 44555 8888877654332100 0
Q ss_pred CCceeEEEEcCC------CcccHHHHHHHHh-cccCCeEEEE
Q 029836 94 HGTFDFVFVDAD------KDNYVNYHKRLIE-LVKVGGVIGY 128 (187)
Q Consensus 94 ~~~~D~v~~d~~------~~~~~~~~~~~~~-~L~~gG~lv~ 128 (187)
.....+++.-+. +.....++..+++ .|+||+.+++
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 123466665443 4556788899988 9999998876
No 237
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.32 E-value=2.6e-06 Score=65.50 Aligned_cols=103 Identities=23% Similarity=0.263 Sum_probs=69.9
Q ss_pred CCCEEEEEcccccHHH----HHHHhhCCC----CCEEEEEeCCchHHHHHHHHHHH-----cCCC---------------
Q 029836 19 NAKNTMEIGVFTGYSL----LATALAIPD----DGKILALDITKEHYEKGLPIIQK-----AGVA--------------- 70 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~----~~l~~~~~~----~~~v~~vd~~~~~~~~a~~~~~~-----~~~~--------------- 70 (187)
++-+|+-.||++|--. ..+.+.++. ..+|+|+|+|...++.|+...=. .+++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3679999999999633 334455442 47899999999999988753322 1221
Q ss_pred --------CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836 71 --------HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 71 --------~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..|+|.+.|..+..+ . .+.||+||+... .+.....++.....|+|||+|++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~------~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-F------LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-c------cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 123444444433221 1 567999998764 45567788999999999999997
No 238
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.30 E-value=9.1e-06 Score=63.60 Aligned_cols=82 Identities=10% Similarity=0.033 Sum_probs=67.4
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++..++|..+|.|.-+..+++.++ .++|+++|.++.+++.+++.++.. ..++++++++..++...+...+ ..++
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~--~~~v 93 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELL--VTKI 93 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcC--CCcc
Confidence 3456899999999999999999887 499999999999999999998765 3689999999987655443221 3579
Q ss_pred eEEEEcC
Q 029836 98 DFVFVDA 104 (187)
Q Consensus 98 D~v~~d~ 104 (187)
|.|++|.
T Consensus 94 DgIl~DL 100 (305)
T TIGR00006 94 DGILVDL 100 (305)
T ss_pred cEEEEec
Confidence 9999984
No 239
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.29 E-value=1.2e-06 Score=68.24 Aligned_cols=104 Identities=24% Similarity=0.273 Sum_probs=70.7
Q ss_pred CCCEEEEEcccccHHHHHHH----hhCC---CCCEEEEEeCCchHHHHHHHHHH------------------Hc-----C
Q 029836 19 NAKNTMEIGVFTGYSLLATA----LAIP---DDGKILALDITKEHYEKGLPIIQ------------------KA-----G 68 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~----~~~~---~~~~v~~vd~~~~~~~~a~~~~~------------------~~-----~ 68 (187)
++-+|+-.||.+|--...+| +..+ ...+|+|+|+++.+++.|++..- .. +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34699999999997444433 3222 13589999999999999987521 10 0
Q ss_pred -------CCCceEEEeCCchHH-HHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 029836 69 -------VAHKIDFREGPALPL-LDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 69 -------~~~~i~~~~~d~~~~-l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+...++|.+.|..+. .+. .+.||+|++... .+.....++.+.+.|+|||+|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~-------~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAV-------PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCcc-------CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 113456666666542 110 368999998543 345678899999999999999863
No 240
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.29 E-value=2.4e-06 Score=65.94 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (187)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 84 (187)
+...+-+-..+...+...|||||+|.|.+|..+++.. .+++++|+++.+.+..++.+. ..++++++++|+.++-
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccc
Confidence 3444444445555578899999999999999999874 799999999999988887665 2378999999998752
Q ss_pred HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhccc---CCeEEEEe
Q 029836 85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVK---VGGVIGYD 129 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~---~gG~lv~~ 129 (187)
.... .......|+...+..-...++..+...-+ ...++++.
T Consensus 90 ~~~~----~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 90 LYDL----LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp GGGH----CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEE
T ss_pred cHHh----hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEe
Confidence 2110 01244566665554333455555554222 33455543
No 241
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.23 E-value=1.6e-06 Score=63.82 Aligned_cols=104 Identities=26% Similarity=0.287 Sum_probs=63.4
Q ss_pred CCCEEEEEcccccHHHHHHH---hh-C----CCCCEEEEEeCCchHHHHHHHHHH--------------Hc-----C---
Q 029836 19 NAKNTMEIGVFTGYSLLATA---LA-I----PDDGKILALDITKEHYEKGLPIIQ--------------KA-----G--- 68 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~---~~-~----~~~~~v~~vd~~~~~~~~a~~~~~--------------~~-----~--- 68 (187)
++-+|+-.||++|--...+| .. . +...+++|+|+++.+++.|++..= +. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999997444333 22 1 113589999999999988875321 00 0
Q ss_pred -----CCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 029836 69 -----VAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 69 -----~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+..+++|.+.|..+..+. .+.||+||+... .+.....++.+...|+|||+|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~-------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPP-------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcc-------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 013577877777662121 568999999865 344577889999999999999974
No 242
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=2.5e-05 Score=61.93 Aligned_cols=104 Identities=19% Similarity=0.177 Sum_probs=86.3
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~ 99 (187)
+.+|+|-=+|+|.=++.++...+ ..+++.-|++|.+.+.+++|++.+.. .+...++.|+..++.+. ...||+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~------~~~fd~ 124 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHEL------HRAFDV 124 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhc------CCCccE
Confidence 88999999999998888888776 34899999999999999999998843 45666679998777764 578999
Q ss_pred EEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 100 VFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 100 v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
|=+|+. .....|++.+.+.++.||+|.+.-+.
T Consensus 125 IDiDPF-GSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 125 IDIDPF-GSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred EecCCC-CCCchHHHHHHHHhhcCCEEEEEecc
Confidence 999874 34567888999999999999986543
No 243
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.21 E-value=1.4e-05 Score=62.05 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=68.2
Q ss_pred HHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836 8 AQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (187)
Q Consensus 8 ~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 84 (187)
.++|..+.. ..+|.+|||+|+|.|..+..+.+.++.-.+++++|.++.+++.++..++.......... .. ...
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~---~~~ 94 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RR---VLY 94 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hh---hhh
Confidence 344555543 35789999999999986666666666447899999999999999887765422111111 11 111
Q ss_pred HHHhhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836 85 DQLIQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.... .....|+|++... ......+++.+++.+.+ +||+
T Consensus 95 ~~~~----~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVl 137 (274)
T PF09243_consen 95 RDFL----PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVL 137 (274)
T ss_pred cccc----cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEE
Confidence 1110 0234499987643 23445677777777766 5553
No 244
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.21 E-value=6.2e-06 Score=64.24 Aligned_cols=93 Identities=18% Similarity=0.291 Sum_probs=54.1
Q ss_pred HHHHHHHhhcC-----CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc-CCCCceEEEeCCch-
Q 029836 9 QFFSMLLKLIN-----AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA-GVAHKIDFREGPAL- 81 (187)
Q Consensus 9 ~~l~~l~~~~~-----~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~- 81 (187)
.++..|+.... ..++||||||.-.+=--|..... +-+++|+|+++..++.|+++++.+ ++.++|+++.....
T Consensus 87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~ 165 (299)
T PF05971_consen 87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPD 165 (299)
T ss_dssp HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-
T ss_pred HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcc
Confidence 34445554433 24799999976654222333322 689999999999999999999999 89999999765433
Q ss_pred HHHHHHhhcccCCCceeEEEEcCC
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
..+..+... .+.||+..+.++
T Consensus 166 ~i~~~i~~~---~e~~dftmCNPP 186 (299)
T PF05971_consen 166 NIFDGIIQP---NERFDFTMCNPP 186 (299)
T ss_dssp SSTTTSTT-----S-EEEEEE---
T ss_pred ccchhhhcc---cceeeEEecCCc
Confidence 233333222 468999999876
No 245
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.19 E-value=8.2e-05 Score=55.98 Aligned_cols=97 Identities=21% Similarity=0.227 Sum_probs=62.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
.+++||-+|=..-.|....+... ..+|+.+|+++..++..++..++.|++ ++.++.|..+.+|.-. .++||
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~--~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~~fD 114 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGL--PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RGKFD 114 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS-BS
T ss_pred cCCEEEEEcCCcHHHHHHHhhCC--CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hcCCC
Confidence 57899999955554444333333 479999999999999999999999983 9999999998887643 58999
Q ss_pred EEEEcCC--CcccHHHHHHHHhcccCCe
Q 029836 99 FVFVDAD--KDNYVNYHKRLIELVKVGG 124 (187)
Q Consensus 99 ~v~~d~~--~~~~~~~~~~~~~~L~~gG 124 (187)
++|.|++ .+...-|+.+....||.-|
T Consensus 115 ~f~TDPPyT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 115 VFFTDPPYTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 9999997 4567778888888888666
No 246
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.13 E-value=1.5e-05 Score=62.79 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=75.3
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~ 99 (187)
-...+|+|.|.|..+..++..+| ++-+++.+...+..++.++. .| ++.+-||..+-.| +-|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P----------~~da 239 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP----------KGDA 239 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC----------CcCe
Confidence 36889999999999999998765 48889999888887777664 33 7778888775544 3468
Q ss_pred EEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836 100 VFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG 134 (187)
Q Consensus 100 v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
||+-.- -++...++++|+..|+|||.|++-+...+
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 876532 56788999999999999998887665433
No 247
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=7.5e-05 Score=54.58 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=77.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.+..+||=+|+.+|.....++.-.+ .+.+.+||.+++..+..-...++. +|+--+.+|+..... ... --+..
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~-Y~~---~Ve~V 146 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEK-YRH---LVEKV 146 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHH-hhh---hcccc
Confidence 4568999999999999999999877 799999999998876655555443 678778888864322 110 04679
Q ss_pred eEEEEcCCCcc-cHHHHHHHHhcccCCeEEEE
Q 029836 98 DFVFVDADKDN-YVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 98 D~v~~d~~~~~-~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+|+.|-.+.+ ..-+...+...||+||++++
T Consensus 147 Dviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 147 DVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred cEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 99999987444 44566777889999996654
No 248
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.04 E-value=4.3e-05 Score=60.44 Aligned_cols=87 Identities=8% Similarity=0.089 Sum_probs=62.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.+.+++||+||++|.++-.+++. +.+|++||..+-. ..+.. .++++...+|...+.+. .+.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~p~-------~~~v 271 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFRPP-------RKNV 271 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccCCC-------CCCC
Confidence 46779999999999999999976 5699999966522 12222 26899999998776552 3579
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCC
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVG 123 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~g 123 (187)
|++++|.. .......+.+.+.|..|
T Consensus 272 DwvVcDmv-e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 272 DWLVCDMV-EKPARVAELMAQWLVNG 296 (357)
T ss_pred CEEEEecc-cCHHHHHHHHHHHHhcC
Confidence 99999985 22334455555666555
No 249
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=7.8e-05 Score=57.75 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=69.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
+...++|..-|.|+-+..+++.+++.++++++|.++.+++.|++.+..++ +++++++++..++...+...+ .+++|
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~--i~~vD 98 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELG--IGKVD 98 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcC--CCcee
Confidence 44689999999999999999999877899999999999999999998866 699999999877655554332 46899
Q ss_pred EEEEcC
Q 029836 99 FVFVDA 104 (187)
Q Consensus 99 ~v~~d~ 104 (187)
-|++|.
T Consensus 99 GiL~DL 104 (314)
T COG0275 99 GILLDL 104 (314)
T ss_pred EEEEec
Confidence 999884
No 250
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.02 E-value=2.3e-05 Score=59.29 Aligned_cols=98 Identities=9% Similarity=0.045 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ 86 (187)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~ 86 (187)
...++..+-.......|-|+|||.+-++. . ....|+++|+-+ .+-+++.+|+... |-
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a----------------~~~~V~~cDm~~v-Pl 224 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA----------------VNERVIACDMRNV-PL 224 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec----------------CCCceeeccccCC-cC
Confidence 34566666666666788999999987654 1 136799999854 3556677787653 32
Q ss_pred HhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 87 LIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 87 ~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
- +++.|+++.... -.+..+++.++.+.|++||.+.+.++-.
T Consensus 225 ~------d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 225 E------DESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred c------cCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhh
Confidence 1 679999987654 5778999999999999999999887653
No 251
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.91 E-value=6.5e-05 Score=58.91 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=61.0
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhc-ccCCC
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD-EKYHG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~-~~~~~ 95 (187)
..++..+||..-|.|+-+..+++.+++ ++++++|.++.+++.+++.+... .+++.+++++..++...+... . ..
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~--~~ 92 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNG--IN 92 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTT--TS
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccC--CC
Confidence 345669999999999999999999885 99999999999999998877654 479999999987765544332 1 46
Q ss_pred ceeEEEEcCC
Q 029836 96 TFDFVFVDAD 105 (187)
Q Consensus 96 ~~D~v~~d~~ 105 (187)
++|-|++|..
T Consensus 93 ~~dgiL~DLG 102 (310)
T PF01795_consen 93 KVDGILFDLG 102 (310)
T ss_dssp -EEEEEEE-S
T ss_pred ccCEEEEccc
Confidence 8999999943
No 252
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=3.6e-05 Score=57.63 Aligned_cols=99 Identities=16% Similarity=0.087 Sum_probs=71.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe-CCchHHHHHHhhcccCCC
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE-GPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~ 95 (187)
..+.+.+||||+.+|..|-.+++.- ..+|+++|.....+..- ++ ..+++..+. .++....+.-. .+
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k---LR---~d~rV~~~E~tN~r~l~~~~~-----~~ 143 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK---LR---NDPRVIVLERTNVRYLTPEDF-----TE 143 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh---Hh---cCCcEEEEecCChhhCCHHHc-----cc
Confidence 3467899999999999999999863 47999999987554321 22 225665544 44544333322 45
Q ss_pred ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..|++++|-+-......+..+..++++++.++.
T Consensus 144 ~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 144 KPDLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 789999998877778888889999999987764
No 253
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=2e-05 Score=64.54 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=92.8
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY 93 (187)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~ 93 (187)
+....++.+|||.=+++|.-++.++..++.-.++++-|.++..++..++|++.++..+.++..++|+....-....-
T Consensus 104 ~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~--- 180 (525)
T KOG1253|consen 104 LKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMV--- 180 (525)
T ss_pred hhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccc---
Confidence 34455677999999999999999999988557899999999999999999999988888889999986543322110
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
...||+|-+|+. .....|++.+.+.++.||+|++.-+
T Consensus 181 ~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 181 AKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEEec
Confidence 368999999874 4456789999999999999998644
No 254
>PHA01634 hypothetical protein
Probab=97.84 E-value=7.9e-05 Score=50.42 Aligned_cols=75 Identities=12% Similarity=0.083 Sum_probs=57.0
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.+.++|+|||.+.|.++++++..- ...|+++|+++...+..+++++.+..-++..... .++.. -+.|
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~-----eW~~~------Y~~~ 93 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG-----EWNGE------YEDV 93 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeecc-----ccccc------CCCc
Confidence 467899999999999999998652 4789999999999999999888764433322221 12221 5789
Q ss_pred eEEEEcCC
Q 029836 98 DFVFVDAD 105 (187)
Q Consensus 98 D~v~~d~~ 105 (187)
|+..+|..
T Consensus 94 Di~~iDCe 101 (156)
T PHA01634 94 DIFVMDCE 101 (156)
T ss_pred ceEEEEcc
Confidence 99999975
No 255
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.83 E-value=4.2e-05 Score=57.54 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=53.8
Q ss_pred HHHHHhhcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC--------CCceEEEeCCc
Q 029836 11 FSMLLKLINA--KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--------AHKIDFREGPA 80 (187)
Q Consensus 11 l~~l~~~~~~--~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~--------~~~i~~~~~d~ 80 (187)
|...+...+. .+|||..+|.|.-+.-++.. +++|+++|-+|-.....+..++.... ..+++++++|+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 3333444443 38999999999999988854 57899999999887777655553311 14799999999
Q ss_pred hHHHHHHhhcccCCCceeEEEEcCC
Q 029836 81 LPLLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 81 ~~~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
.++++.. ..+||+|++|+.
T Consensus 142 ~~~L~~~------~~s~DVVY~DPM 160 (234)
T PF04445_consen 142 LEYLRQP------DNSFDVVYFDPM 160 (234)
T ss_dssp CCHCCCH------SS--SEEEE--S
T ss_pred HHHHhhc------CCCCCEEEECCC
Confidence 9988722 679999999986
No 256
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.83 E-value=5.8e-05 Score=54.88 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=69.3
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
..+.++|||.|+|+|..++..++.. ...|++.|++|.....++-|.+.++. .+.+...|..- . +..
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~--------~~~ 142 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--S--------PPA 142 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--C--------Ccc
Confidence 3467899999999999888777653 47899999999998888989988885 67777776642 1 578
Q ss_pred eeEEEEcCC---CcccHHHHHHHHhcccCCeEEE
Q 029836 97 FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 97 ~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv 127 (187)
+|+++...- +......+. +...++..|.-+
T Consensus 143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~v 175 (218)
T COG3897 143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAV 175 (218)
T ss_pred eeEEEeeceecCchHHHHHHH-HHHHHHhCCCEE
Confidence 999987543 444444444 444555555443
No 257
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.77 E-value=0.00033 Score=53.73 Aligned_cols=120 Identities=10% Similarity=0.124 Sum_probs=69.5
Q ss_pred HHHHhhcCCCEEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh-
Q 029836 12 SMLLKLINAKNTMEIGVFTGY--SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI- 88 (187)
Q Consensus 12 ~~l~~~~~~~~vLeiG~g~G~--~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~- 88 (187)
+.|+....-...||||||.-. .+.++++...++++|+-||.+|-.+..++..+..... .+..++++|..+.-.-+.
T Consensus 61 r~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~ 139 (267)
T PF04672_consen 61 RYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAH 139 (267)
T ss_dssp HHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCS
T ss_pred HHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcC
Confidence 334433456799999999543 6777877766689999999999999999988876532 248999999876422211
Q ss_pred ----hcccCCCceeEEEEcC-----CCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 89 ----QDEKYHGTFDFVFVDA-----DKDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 89 ----~~~~~~~~~D~v~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
.-..-+.+.=++++.. +.++....+..+...|.+|++|+++...
T Consensus 140 p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 140 PEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp HHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred HHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 0000023333444332 1356788999999999999999987654
No 258
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.72 E-value=0.00011 Score=60.67 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=53.4
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-HcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ-KAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF 99 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~ 99 (187)
..+||||||.|.++.++++. +-..+++-+... ..++..+. +.|++.-+-+. ++ .-+|-. ++.||+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~--~~~qvqfaleRGvpa~~~~~-~s--~rLPfp------~~~fDm 184 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER---NVTTMSFAPNDE--HEAQVQFALERGVPAMIGVL-GS--QRLPFP------SNAFDM 184 (506)
T ss_pred EEEEeccceeehhHHHHhhC---CceEEEcccccC--CchhhhhhhhcCcchhhhhh-cc--ccccCC------ccchhh
Confidence 57899999999999999865 333334333222 12222222 23443221111 11 111211 578999
Q ss_pred EEEcCC----CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 100 VFVDAD----KDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 100 v~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
|.+... ...---++-++-++|+|||+++.+..
T Consensus 185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 976532 22222355567799999999997543
No 259
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.71 E-value=0.00045 Score=60.18 Aligned_cols=102 Identities=25% Similarity=0.245 Sum_probs=69.7
Q ss_pred CCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCchHHHH--------------HHHHHHH-----cCC
Q 029836 20 AKNTMEIGVFTGYSLLATALAI-------PD----DGKILALDITKEHYEK--------------GLPIIQK-----AGV 69 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~-------~~----~~~v~~vd~~~~~~~~--------------a~~~~~~-----~~~ 69 (187)
.-+|+|+|-|+|...+...+.. ++ ..+++++|..|-..+. +++.... .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999777766444 21 2478999986532222 2222211 121
Q ss_pred ------CC--ceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-C----c-ccHHHHHHHHhcccCCeEEE
Q 029836 70 ------AH--KIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-K----D-NYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 70 ------~~--~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-~----~-~~~~~~~~~~~~L~~gG~lv 127 (187)
.. ++++..||+.+.++.+ ...+|.+|.|+. + + -..++|..+.+++++||.++
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 11 3567889999988877 457999999975 1 1 13679999999999999997
No 260
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.70 E-value=0.0001 Score=60.47 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=84.4
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~ 99 (187)
...+|-+|-|.|....++...+| ..++++||++|++++.|++++.-..- .+.+++..|..+++.+......+...||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 45788888888999999888877 68999999999999999999864332 35677778888888877654323568999
Q ss_pred EEEcCCC-c------c-----cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 100 VFVDADK-D------N-----YVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 100 v~~d~~~-~------~-----~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+++|-+- . . ...++..+...|.|.|+++++-+-.
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 9998541 1 1 1345556667999999998875543
No 261
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.68 E-value=0.00078 Score=46.40 Aligned_cols=104 Identities=19% Similarity=0.146 Sum_probs=66.6
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCC-CceeEE
Q 029836 23 TMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYH-GTFDFV 100 (187)
Q Consensus 23 vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~-~~~D~v 100 (187)
++|+|||.|..+ .+....+....++++|+++.++..++..... .....+.+..++.... ++-. . ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFE------DSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCC------CCCceeEE
Confidence 999999999977 4343322124889999999988875544432 1111157777776542 2211 2 378999
Q ss_pred EEcCCC--cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836 101 FVDADK--DNYVNYHKRLIELVKVGGVIGYDNTLWG 134 (187)
Q Consensus 101 ~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
...... ......+..+.+.++++|.+++......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 333221 1146788889999999999988766543
No 262
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.67 E-value=0.00021 Score=54.10 Aligned_cols=84 Identities=17% Similarity=0.123 Sum_probs=56.9
Q ss_pred HHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836 9 QFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL 87 (187)
Q Consensus 9 ~~l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~ 87 (187)
.++..+... ..+.+|+|||||.--.+..+.... ++..+++.|++...++.....+...+.. .++...|...-.+
T Consensus 94 ~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~-- 168 (251)
T PF07091_consen 94 EFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP-- 168 (251)
T ss_dssp HHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--
T ss_pred HHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--
Confidence 344444433 347899999999998888777543 3689999999999999999999998864 4454455543322
Q ss_pred hhcccCCCceeEEEEc
Q 029836 88 IQDEKYHGTFDFVFVD 103 (187)
Q Consensus 88 ~~~~~~~~~~D~v~~d 103 (187)
.+..|+.++-
T Consensus 169 ------~~~~DlaLll 178 (251)
T PF07091_consen 169 ------KEPADLALLL 178 (251)
T ss_dssp ------TSEESEEEEE
T ss_pred ------CCCcchhhHH
Confidence 5678999874
No 263
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.65 E-value=0.0012 Score=49.67 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHh------hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC
Q 029836 5 PDEAQFFSMLLK------LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG 78 (187)
Q Consensus 5 ~~~~~~l~~l~~------~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~ 78 (187)
|...++...++. +.+..+||-+|+++|.+....+....+.+-|.+||.++..=+..-...++ .+|+--+..
T Consensus 136 PfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk---RtNiiPIiE 212 (317)
T KOG1596|consen 136 PFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK---RTNIIPIIE 212 (317)
T ss_pred hHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc---cCCceeeec
Confidence 444555555442 34567999999999999999999888889999999998765443332222 257777777
Q ss_pred CchHHHHHHhhcccCCCceeEEEEcCCCcccHH-HHHHHHhcccCCeEEEE
Q 029836 79 PALPLLDQLIQDEKYHGTFDFVFVDADKDNYVN-YHKRLIELVKVGGVIGY 128 (187)
Q Consensus 79 d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~-~~~~~~~~L~~gG~lv~ 128 (187)
|+...-.-.. .-+-.|+||.|-.+.+... ..-.+...||+||-+++
T Consensus 213 DArhP~KYRm----lVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 213 DARHPAKYRM----LVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred cCCCchheee----eeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEE
Confidence 8764322100 0357899999987544433 33456679999998876
No 264
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00026 Score=50.02 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=67.7
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC--CceEEEeCCchHHHHHHhhcccCC
Q 029836 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--HKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
..+++|||+|.| +|..++.+|...+ ...|...|-+++.++..++....+-.. .++....-. ..-.+...+ .
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~--~~~aqsq~e---q 101 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL--IWGAQSQQE---Q 101 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH--HhhhHHHHh---h
Confidence 356899999988 4556666776655 689999999999998888766543111 122111111 111111111 3
Q ss_pred CceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEE
Q 029836 95 GTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 95 ~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..||+|++... .+.+....+.++.+|+|.|.-++
T Consensus 102 ~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 102 HTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred CcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 58999986432 56677888899999999987554
No 265
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.58 E-value=6.8e-05 Score=55.93 Aligned_cols=97 Identities=11% Similarity=0.096 Sum_probs=71.4
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~ 99 (187)
-..++||||+.|.....+.... -.+++-+|.+..+++.++..-. .++ .+..+.+|- ++++ +. ++++|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p~i--~~~~~v~DE-E~Ld-f~-----ens~DL 140 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-PSI--ETSYFVGDE-EFLD-FK-----ENSVDL 140 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-Cce--EEEEEecch-hccc-cc-----ccchhh
Confidence 4589999999999999887542 4789999999999987765221 111 233455554 4555 32 679999
Q ss_pred EEEcC---CCcccHHHHHHHHhcccCCeEEEE
Q 029836 100 VFVDA---DKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 100 v~~d~---~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+... |.-+.+..+..|...|||.|.++.
T Consensus 141 iisSlslHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 141 IISSLSLHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhhhhhhhccCchHHHHHHHhcCCCccchh
Confidence 98664 356778899999999999999985
No 266
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.52 E-value=0.00012 Score=56.05 Aligned_cols=114 Identities=17% Similarity=0.092 Sum_probs=66.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCc--------------------------
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK-------------------------- 72 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~-------------------------- 72 (187)
++.++||||||.-. ..++.+.+...++++.|..+...+..++.++..+.-+.
T Consensus 56 ~g~~llDiGsGPti--y~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTI--YQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT----GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHH--HhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 45689999998733 23344433346899999999999888888876532110
Q ss_pred -e-EEEeCCchHHHHHHhhcccCCCceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836 73 -I-DFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-------KDNYVNYHKRLIELVKVGGVIGYDNTLWGG 135 (187)
Q Consensus 73 -i-~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
+ +++.+|..+.-+ +.......+++|+|+.-.. .+.|...++.+.++|||||.|++..++-..
T Consensus 134 ~Vk~Vv~cDV~~~~p-l~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t 204 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNP-LDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST 204 (256)
T ss_dssp HEEEEEE--TTSSST-TTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S
T ss_pred hhceEEEeeccCCCC-CCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce
Confidence 1 122333222100 0000000235999976532 456788889999999999999997776543
No 267
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.46 E-value=0.0016 Score=50.29 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=70.4
Q ss_pred HHHHHHHhhcC-------CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCC----------
Q 029836 9 QFFSMLLKLIN-------AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH---------- 71 (187)
Q Consensus 9 ~~l~~l~~~~~-------~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~---------- 71 (187)
-++..|-...+ ..+||-=|||.|.++.+++.. +..+.+.|.|--|+-...-.+.......
T Consensus 39 ~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 39 PILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 34555554443 369999999999999999976 5789999999887643333222111111
Q ss_pred -----------------------------ceEEEeCCchHHHHHHhhcccCCCceeEEE----EcCCCcccHHHHHHHHh
Q 029836 72 -----------------------------KIDFREGPALPLLDQLIQDEKYHGTFDFVF----VDADKDNYVNYHKRLIE 118 (187)
Q Consensus 72 -----------------------------~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~----~d~~~~~~~~~~~~~~~ 118 (187)
++.+..||..+.-..-. ..++||.|+ +|- .....++++.+.+
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~----~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~~ 190 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDE----NKGSFDVVVTCFFIDT-AENIIEYIETIEH 190 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcc----cCCcccEEEEEEEeec-hHHHHHHHHHHHH
Confidence 23333344333221100 025888884 443 4667899999999
Q ss_pred cccCCeEEE
Q 029836 119 LVKVGGVIG 127 (187)
Q Consensus 119 ~L~~gG~lv 127 (187)
+|||||+-|
T Consensus 191 lLkpgG~WI 199 (270)
T PF07942_consen 191 LLKPGGYWI 199 (270)
T ss_pred HhccCCEEE
Confidence 999999665
No 268
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.0018 Score=46.92 Aligned_cols=103 Identities=14% Similarity=0.214 Sum_probs=65.2
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchH--HHHHHhhcccCC
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALP--LLDQLIQDEKYH 94 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~--~l~~~~~~~~~~ 94 (187)
.+..+|||+||..|.|+--.-+...+.+.|.+||+-.-. . .+-++++++ |..+ ...++..... +
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p-~~Ga~~i~~~dvtdp~~~~ki~e~lp-~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------P-PEGATIIQGNDVTDPETYRKIFEALP-N 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------C-CCCcccccccccCCHHHHHHHHHhCC-C
Confidence 356799999999999998887777668999999985311 1 134555555 3322 2222221111 4
Q ss_pred CceeEEEEcCC-------CcccHHHHHHH-------HhcccCCeEEEEeCcCCCc
Q 029836 95 GTFDFVFVDAD-------KDNYVNYHKRL-------IELVKVGGVIGYDNTLWGG 135 (187)
Q Consensus 95 ~~~D~v~~d~~-------~~~~~~~~~~~-------~~~L~~gG~lv~~~~~~~~ 135 (187)
...|+|+.|.. ..++...++.| ...++|+|.+++. +|.|
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g 187 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG 187 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence 58899999964 12333333333 4678899999985 4544
No 269
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0014 Score=52.16 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=78.2
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh--hc
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI--QD 90 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~---~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~--~~ 90 (187)
...+..+|||+.+..|.-+..+++.+-. .+.|+|=|.++..+...+..++.... ++..+...++..+ +... ..
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~-p~~~~~~~ 229 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLF-PNIYLKDG 229 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceec-cccccccC
Confidence 4557789999999999999998887642 25899999999999888887755443 4455544444322 2110 00
Q ss_pred c-cCCCceeEEEEcCCC------cc--------------------cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 91 E-KYHGTFDFVFVDADK------DN--------------------YVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 91 ~-~~~~~~D~v~~d~~~------~~--------------------~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
+ .....||-|++|.+. .. ....+....++||+||.+|.+.+..
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 0 013579999999540 00 1345666778999999999876543
No 270
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.28 E-value=0.0006 Score=49.69 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=61.9
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHH------HHHHHHHHcCCCCceEEEeCCchHHHHHHhhc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYE------KGLPIIQKAGVAHKIDFREGPALPLLDQLIQD 90 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~------~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~ 90 (187)
+.+..+|+|+-.|.|++|.-++..+.+.+.|++.-+.+...- ......++... .|.+.+-.+...+.+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~~----- 119 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALGA----- 119 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccCC-----
Confidence 445679999999999999999998887788888766543110 00111111111 233333222222111
Q ss_pred ccCCCceeEEEEcCC----------CcccHHHHHHHHhcccCCeEEEEeC
Q 029836 91 EKYHGTFDFVFVDAD----------KDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 91 ~~~~~~~D~v~~d~~----------~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.+..|+++.... ......++..+.+.|||||++++.|
T Consensus 120 ---pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 120 ---PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred ---CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 345566543211 2234567788899999999887744
No 271
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.28 E-value=0.00047 Score=55.47 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=78.7
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.++..++++|||.|....+++.. . ...+++++.++..+..+.......++.++..++.++...... ++..|
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-~-~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f-------edn~f 179 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-K-KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF-------EDNTF 179 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-c-cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-------Ccccc
Confidence 34457899999999999998875 2 578999999998887777777766666555555555443211 15688
Q ss_pred eEEE-EcCC--CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 98 DFVF-VDAD--KDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 98 D~v~-~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
|.+. ++.. .......++++.+.++|||+.+.-++.
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 9886 4433 566788999999999999999986553
No 272
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.00028 Score=55.82 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=65.1
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
...|++|||+|.|.|.....+-.-+|.-.+++.+|.++..-+........... ........+...-...+. ..+.
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp----~ad~ 185 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLP----AADL 185 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCC----ccce
Confidence 34688999999999886665555566446778888888655444332222222 222222333222111111 1457
Q ss_pred eeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEe
Q 029836 97 FDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 97 ~D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+++++-.. .......++.+|.++.|||.||+-
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 888875432 334556889999999999999864
No 273
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.25 E-value=0.0043 Score=49.43 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=68.2
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
..+.++|+-+|+| .|..++.+++++ +.+|+++|.+++..+.|++. |. -.++.....+..+.. .+
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~------~~ 228 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV------KE 228 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh------Hh
Confidence 4456788887776 556888889877 48999999999998888763 22 223333222444444 23
Q ss_pred ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
.+|+|+.-.. ...++...+.|++||.+++-...
T Consensus 229 ~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 229 IADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence 5899987543 56677888899999999986655
No 274
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.011 Score=44.83 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=79.2
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhc
Q 029836 14 LLKLINAKNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD 90 (187)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~---~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~ 90 (187)
++....+...+|+|+|+-.-+..++.++.. -.+.+.+|++...++...+.+.+....-.+.-+.+|.+..+..+..
T Consensus 73 ia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~- 151 (321)
T COG4301 73 IASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPR- 151 (321)
T ss_pred HHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccC-
Confidence 445567889999999999989988888753 2589999999998875555444432223455577888777766531
Q ss_pred ccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 029836 91 EKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 91 ~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+.-=++|+... ++....|+..+...|+||-++++
T Consensus 152 ---~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 152 ---GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred ---CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 223344555533 56778899999999999998876
No 275
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.19 E-value=0.00099 Score=52.61 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHH-------HHHHHHHHcCCCCc-eEE
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYE-------KGLPIIQKAGVAHK-IDF 75 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~-------~a~~~~~~~~~~~~-i~~ 75 (187)
.++-.-++..++...+++.|.|=-.|+|......+.- ++.|++.||+-.+++ ..+.|+++.|..++ ..+
T Consensus 193 DAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldv 269 (421)
T KOG2671|consen 193 DAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDV 269 (421)
T ss_pred chhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhhe
Confidence 3455556666777778899999999999887766653 689999999887766 56889999997654 466
Q ss_pred EeCCchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836 76 REGPALP-LLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 76 ~~~d~~~-~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
+.+|... .+.. +-.||.|++|++
T Consensus 270 l~~D~sn~~~rs-------n~~fDaIvcDPP 293 (421)
T KOG2671|consen 270 LTADFSNPPLRS-------NLKFDAIVCDPP 293 (421)
T ss_pred eeecccCcchhh-------cceeeEEEeCCC
Confidence 7777654 2322 458999999976
No 276
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.15 E-value=0.00029 Score=54.54 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=72.1
Q ss_pred CCEEEEEcccccHHHH-HHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 20 AKNTMEIGVFTGYSLL-ATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~-~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
...|+|+.+|.||.+. ++..+ + ...|+|+|.+|..++..+.+++.++...+..++.+|....-+ ....|
T Consensus 195 ~eviVDLYAGIGYFTlpflV~a-g-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~Ad 264 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTA-G-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRAD 264 (351)
T ss_pred cchhhhhhcccceEEeehhhcc-C-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccch
Confidence 4789999999999999 44443 2 478999999999999999999999888888888888765433 34667
Q ss_pred EEEEcCC---CcccHHHHHHHHhcccCCe-EEEEeCcC
Q 029836 99 FVFVDAD---KDNYVNYHKRLIELVKVGG-VIGYDNTL 132 (187)
Q Consensus 99 ~v~~d~~---~~~~~~~~~~~~~~L~~gG-~lv~~~~~ 132 (187)
-|.+..- .+.++.+.+. +=.+|| ++-++...
T Consensus 265 rVnLGLlPSse~~W~~A~k~---Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 265 RVNLGLLPSSEQGWPTAIKA---LKPEGGSILHIHENV 299 (351)
T ss_pred heeeccccccccchHHHHHH---hhhcCCcEEEEeccc
Confidence 7776643 4445554443 333566 66555443
No 277
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.07 E-value=0.011 Score=46.45 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHH---------hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCc
Q 029836 3 TSPDEAQFFSMLL---------KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK 72 (187)
Q Consensus 3 ~~~~~~~~l~~l~---------~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~ 72 (187)
++-+.+.+++-|. ......++|-+|+| .|..+.-.|++++ ..+|+.+|+.++.++.|++ + |...-
T Consensus 144 vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~ 218 (354)
T KOG0024|consen 144 VSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVT 218 (354)
T ss_pred CchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEE
Confidence 4455566665543 23456799999999 5777777888887 6899999999999999988 4 43211
Q ss_pred eEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 73 IDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 73 i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
...-+.+..+.+.+..........+|+.|--. ....-++.....++.||.+++..+
T Consensus 219 ~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCs---G~~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 219 DPSSHKSSPQELAELVEKALGKKQPDVTFDCS---GAEVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred eeccccccHHHHHHHHHhhccccCCCeEEEcc---CchHHHHHHHHHhccCCEEEEecc
Confidence 11222222233333322221123588888432 234556667788999999887654
No 278
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.07 E-value=0.0052 Score=51.68 Aligned_cols=131 Identities=19% Similarity=0.267 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP 79 (187)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~---~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d 79 (187)
++.++.+++..++...+..+|.|-.||+|.......+.+.. ...+.+.|+++.....++.|+--+|....+...++|
T Consensus 170 TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d 249 (489)
T COG0286 170 TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD 249 (489)
T ss_pred ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 45667778888777655669999999999988887776642 267999999999999999999988885445666776
Q ss_pred chHHHHHHhhcccCCCceeEEEEcCCC----------------------------cccHHHHHHHHhcccCCe---EEEE
Q 029836 80 ALPLLDQLIQDEKYHGTFDFVFVDADK----------------------------DNYVNYHKRLIELVKVGG---VIGY 128 (187)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~D~v~~d~~~----------------------------~~~~~~~~~~~~~L~~gG---~lv~ 128 (187)
........ . ..+.+.||+|+..++- .....++..+...|+||| +++.
T Consensus 250 tl~~~~~~-~-~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 250 TLSNPKHD-D-KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred cccCCccc-c-cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 65321110 0 0014679988776440 111567888889999865 5555
Q ss_pred eCcCCCc
Q 029836 129 DNTLWGG 135 (187)
Q Consensus 129 ~~~~~~~ 135 (187)
+++++.+
T Consensus 328 ~gvlfr~ 334 (489)
T COG0286 328 DGVLFRG 334 (489)
T ss_pred CCcCcCC
Confidence 6666654
No 279
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.05 E-value=0.0089 Score=48.13 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=68.8
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhcccCCCc
Q 029836 19 NAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 19 ~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~ 96 (187)
++.+++-+|+|. |..+..+++.++ ..+|+.+|.+++.++.|++.... ..+..... +......... ....
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCCC
Confidence 334899999984 666677777765 68999999999999999875532 11111111 1111111221 0236
Q ss_pred eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836 97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWG 134 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
+|++|--.. ....++.+.+.+++||.+++-.+...
T Consensus 239 ~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 239 ADVVIEAVG---SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 999996443 56688899999999999998666533
No 280
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.0034 Score=43.85 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=72.2
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY 93 (187)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~ 93 (187)
++...+..+.+|+|+|.|.+.+..++.. --.-+++|.+|.....++-..-+.|+..+.+|+.-|.-.+-
T Consensus 67 ll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d--------- 135 (199)
T KOG4058|consen 67 LLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD--------- 135 (199)
T ss_pred HccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc---------
Confidence 3334455789999999999988877652 24579999999999888877777788778888776654331
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
-..|..+++-+..+-..+.-..+..-++.+..++.
T Consensus 136 l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 136 LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 23455555555444455555666667778887773
No 281
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.00 E-value=0.0019 Score=52.65 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=51.7
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
.+||||+|+|..+...+++. .-.|+++|.-..+.+.|++...++|..++|+++.-.+.+
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 67999999999999888875 356999999999999999999999999999888766544
No 282
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=96.87 E-value=0.0081 Score=45.76 Aligned_cols=111 Identities=12% Similarity=0.168 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ 86 (187)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~ 86 (187)
...++..+...+.... +...+|+=.++..+++ +.-+.+++|..+.-.+..++++... .++++++.|..+.+..
T Consensus 46 l~~yl~~v~~~n~~~~-l~~YPGSP~ia~~llR---~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~a 118 (245)
T PF04378_consen 46 LQPYLDAVRALNPDGE-LRFYPGSPAIAARLLR---EQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKA 118 (245)
T ss_dssp GHHHHHHHHHHSSSSS---EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHH
T ss_pred HHHHHHHHHHhccCCC-cCcCCCCHHHHHHhCC---ccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhh
Confidence 3455555554444333 5566655555555543 3679999999999999888888652 6899999999987766
Q ss_pred HhhcccCCCceeEEEEcCC---CcccHHHHHHHHhccc--CCeEEE
Q 029836 87 LIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVK--VGGVIG 127 (187)
Q Consensus 87 ~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~--~gG~lv 127 (187)
+.+. ..+==+|+||++ +.+|....+.+...++ +.|+++
T Consensus 119 llPP---~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~ 161 (245)
T PF04378_consen 119 LLPP---PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYA 161 (245)
T ss_dssp H-S----TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEE
T ss_pred hCCC---CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEE
Confidence 6433 334569999997 4556665555554444 556554
No 283
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.80 E-value=0.0049 Score=51.12 Aligned_cols=97 Identities=15% Similarity=0.211 Sum_probs=57.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
+-.+|+|+.+|.|..+..|.+. + |..+-.-|..-...-..+-..|+ +-+. -|..+.++.. ..+||
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~-~----VWVMNVVP~~~~ntL~vIydRGL---IG~y-hDWCE~fsTY------PRTYD 429 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD-P----VWVMNVVPVSGPNTLPVIYDRGL---IGVY-HDWCEAFSTY------PRTYD 429 (506)
T ss_pred ceeeeeeecccccHHHHHhccC-C----ceEEEecccCCCCcchhhhhccc---chhc-cchhhccCCC------Ccchh
Confidence 4469999999999999888753 2 44333333211111112222232 1111 1334444443 67899
Q ss_pred EEEEcCC------CcccHHHHHHHHhcccCCeEEEEeC
Q 029836 99 FVFVDAD------KDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 99 ~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+|..++- +-.....+-++-+.|+|||.+++.|
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 9998854 2334566777789999999999855
No 284
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.76 E-value=0.01 Score=40.35 Aligned_cols=92 Identities=22% Similarity=0.227 Sum_probs=61.1
Q ss_pred cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCcc
Q 029836 29 FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDN 108 (187)
Q Consensus 29 g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~ 108 (187)
|.|..+..+++..+ .+|+++|.++...+.+++ .|...-+.....+..+.+..+.. ...+|+||--..
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~~----~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELTG----GRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHTT----TSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hcccccccccccccccccccccc----cccceEEEEecC---
Confidence 45888999999874 899999999988776654 44211111122233334444321 237999986432
Q ss_pred cHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 109 YVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 109 ~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
....++.+..+++++|.+++-....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 3678888999999999999866554
No 285
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.66 E-value=0.028 Score=41.85 Aligned_cols=108 Identities=14% Similarity=0.078 Sum_probs=64.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCchHHHHHHHHHHHcC-----------------------------
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDD-GKILALDITKEHYEKGLPIIQKAG----------------------------- 68 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~-~~v~~vd~~~~~~~~a~~~~~~~~----------------------------- 68 (187)
.|-++.|-.||.|+...-+.--.++. ..|++-|+++++++.|++|+.-..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 45699999999999877665433323 689999999999999999886221
Q ss_pred ------------CCCceEEEeCCchHHH--HHHhhcccCCCceeEEEEcCC-------C-----cccHHHHHHHHhcccC
Q 029836 69 ------------VAHKIDFREGPALPLL--DQLIQDEKYHGTFDFVFVDAD-------K-----DNYVNYHKRLIELVKV 122 (187)
Q Consensus 69 ------------~~~~i~~~~~d~~~~l--~~~~~~~~~~~~~D~v~~d~~-------~-----~~~~~~~~~~~~~L~~ 122 (187)
-.....+.+.|..+.- ... +. ....|+|+.|-+ . .....+++.+.+.|..
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~-~~---~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~ 206 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVL-DA---GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE 206 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHH-HT---T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhh-cc---CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC
Confidence 0112445555554422 122 11 234699999954 1 1246789999999988
Q ss_pred CeEEEEeC
Q 029836 123 GGVIGYDN 130 (187)
Q Consensus 123 gG~lv~~~ 130 (187)
++++++.|
T Consensus 207 ~sVV~v~~ 214 (246)
T PF11599_consen 207 RSVVAVSD 214 (246)
T ss_dssp T-EEEEEE
T ss_pred CcEEEEec
Confidence 88888744
No 286
>PRK13699 putative methylase; Provisional
Probab=96.65 E-value=0.0033 Score=47.49 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=40.2
Q ss_pred eEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc------------------ccHHHHHHHHhcccCCeEEEE
Q 029836 73 IDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD------------------NYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 73 i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~------------------~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+++++|+.+.++.+. ++++|+|+.|++.- -...++.++.+.|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lp-----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFP-----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCC-----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3688999999988875 67999999997621 123567888899999998875
No 287
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.63 E-value=0.012 Score=39.19 Aligned_cols=88 Identities=17% Similarity=0.060 Sum_probs=57.4
Q ss_pred ccccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCceeEEEEcC
Q 029836 28 VFTGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTFDFVFVDA 104 (187)
Q Consensus 28 ~g~G~~~~~l~~~~~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~D~v~~d~ 104 (187)
||.|..+..+++.+.... .++.+|.+++..+.+++ ..+.++.||+.+ .+.+.. -.+.+.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~-----i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAG-----IEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTT-----GGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcC-----ccccCEEEEcc
Confidence 455778888887775455 89999999998776654 236788898865 355442 35789998876
Q ss_pred CCcccHHHHHHHHhcccCCeEEEE
Q 029836 105 DKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 105 ~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
......-..-...+.+.+...+++
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEE
Confidence 544333333344466667766664
No 288
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.51 E-value=0.0041 Score=46.22 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=52.9
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCCCceeE
Q 029836 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYHGTFDF 99 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~~D~ 99 (187)
.++|||||=+......-.. --.|+.||+++. .-.+.+.|+.+. +|.. +.++||+
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~-----~~e~Fdv 107 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQ----------------HPGILQQDFMERPLPKN-----ESEKFDV 107 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCCC----------------CCCceeeccccCCCCCC-----cccceeE
Confidence 5899999975544332211 246999999862 233455566553 3332 1578999
Q ss_pred EEEcC------CCcccHHHHHHHHhcccCCeE
Q 029836 100 VFVDA------DKDNYVNYHKRLIELVKVGGV 125 (187)
Q Consensus 100 v~~d~------~~~~~~~~~~~~~~~L~~gG~ 125 (187)
|.+.. .+...-+.+..+..+|+++|.
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 97653 244556788899999999999
No 289
>PRK11524 putative methyltransferase; Provisional
Probab=96.51 E-value=0.0067 Score=47.38 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=41.7
Q ss_pred CceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCc---c------------c----HHHHHHHHhcccCCeEEEEe
Q 029836 71 HKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKD---N------------Y----VNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 71 ~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~---~------------~----~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+.+++++|+.+.+..+. .+++|+|++|++.. . + ..++..+.++||+||.+++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~-----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIP-----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcc-----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456789999999887663 56899999998621 0 1 35778889999999999863
No 290
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.49 E-value=0.0041 Score=46.63 Aligned_cols=80 Identities=14% Similarity=0.281 Sum_probs=56.5
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHc-CCCCceEEEe-CCchHHHHHHhhcccCCCce
Q 029836 21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKA-GVAHKIDFRE-GPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~~ 97 (187)
-++||||+|.- .++=+-... -+.+.++.|+++..++.|+.++..+ ++...++++. -|....++.+... ++.|
T Consensus 80 i~~LDIGvGAn--CIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~---nE~y 154 (292)
T COG3129 80 IRILDIGVGAN--CIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGK---NERY 154 (292)
T ss_pred eEEEeeccCcc--cccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccc---ccee
Confidence 47899988654 344221111 1468999999999999999999988 7767787754 4554555554322 5799
Q ss_pred eEEEEcCC
Q 029836 98 DFVFVDAD 105 (187)
Q Consensus 98 D~v~~d~~ 105 (187)
|+..++++
T Consensus 155 d~tlCNPP 162 (292)
T COG3129 155 DATLCNPP 162 (292)
T ss_pred eeEecCCC
Confidence 99999887
No 291
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=96.43 E-value=0.038 Score=38.62 Aligned_cols=114 Identities=14% Similarity=0.173 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836 7 EAQFFSMLLKLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (187)
Q Consensus 7 ~~~~l~~l~~~~~--~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 84 (187)
|...|...+.... +.-|||+|-|.|..=-.+-+.+| +-+++.+|-.-..-. ...++.-.+++|+..+.+
T Consensus 14 QR~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp--------~~~P~~~~~ilGdi~~tl 84 (160)
T PF12692_consen 14 QRDCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHP--------SSTPPEEDLILGDIRETL 84 (160)
T ss_dssp HHHHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G--------GG---GGGEEES-HHHHH
T ss_pred HHHHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCC--------CCCCchHheeeccHHHHh
Confidence 3444555555443 35899999999998888888888 789999997432111 012245578999999988
Q ss_pred HHHhhcccCCCceeEEEEcCC---Ccc---cHHHH-HHHHhcccCCeEEEEeCcC
Q 029836 85 DQLIQDEKYHGTFDFVFVDAD---KDN---YVNYH-KRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~---~~~---~~~~~-~~~~~~L~~gG~lv~~~~~ 132 (187)
+.+... ..+.-++..|.. ++. ...++ ..+.++|.+||+++-..-+
T Consensus 85 ~~~~~~---g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl 136 (160)
T PF12692_consen 85 PALARF---GAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPL 136 (160)
T ss_dssp HHHHHH----S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS--
T ss_pred HHHHhc---CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 873322 346667777743 111 11222 3445899999999865443
No 292
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.43 E-value=0.078 Score=44.81 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=67.1
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC------------chHHH
Q 029836 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP------------ALPLL 84 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d------------~~~~l 84 (187)
.++.+|+-+|+| .|..++..++.++ ++|+++|.+++.++.+++ .|. ..+.+-..+ ..++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA-~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGA-EFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCC-eEEEeccccccccccchhhhcchhHH
Confidence 468899999998 4667777888774 589999999998887765 332 111110000 01111
Q ss_pred H---HHhhcccCCCceeEEEEcCCCc--ccHHH-HHHHHhcccCCeEEEEeCcCCCc
Q 029836 85 D---QLIQDEKYHGTFDFVFVDADKD--NYVNY-HKRLIELVKVGGVIGYDNTLWGG 135 (187)
Q Consensus 85 ~---~~~~~~~~~~~~D~v~~d~~~~--~~~~~-~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
. ....+ .-..+|+|+--.... ..+.. .+.+.+.+|+||+++.-.+...+
T Consensus 236 ~~~~~~~~~--~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG 290 (509)
T PRK09424 236 KAEMALFAE--QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG 290 (509)
T ss_pred HHHHHHHHh--ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence 1 11000 014689998665421 12344 58999999999999876654444
No 293
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.37 E-value=0.0011 Score=48.81 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=64.8
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
.|.++||+|+|.|-++..++..+ .+|.+.|.|..|....++ . +..+. ...+.+.. +-+||
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k----k----~ynVl--~~~ew~~t-------~~k~d 171 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK----K----NYNVL--TEIEWLQT-------DVKLD 171 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh----c----CCcee--eehhhhhc-------Cceee
Confidence 46799999999999999887543 468999999888765543 1 22222 22233321 34789
Q ss_pred EEEEcCC---CcccHHHHHHHHhcccC-CeEEEEeCcCCC
Q 029836 99 FVFVDAD---KDNYVNYHKRLIELVKV-GGVIGYDNTLWG 134 (187)
Q Consensus 99 ~v~~d~~---~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~ 134 (187)
+|.+-.- ..+....++.++..|+| +|.+|+.=++.-
T Consensus 172 li~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~ 211 (288)
T KOG3987|consen 172 LILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPY 211 (288)
T ss_pred hHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 8865332 34456788889999998 888877655543
No 294
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=96.29 E-value=0.01 Score=40.49 Aligned_cols=50 Identities=28% Similarity=0.397 Sum_probs=38.3
Q ss_pred ceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC-C----cc-cHHHHHHHHhcccCCeEEE
Q 029836 72 KIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD-K----DN-YVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 72 ~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~-~----~~-~~~~~~~~~~~L~~gG~lv 127 (187)
++++..||+.+.++++ ...+|++|.|+. + +- ..++|..+.+++++||.+.
T Consensus 32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~ 87 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLA 87 (124)
T ss_dssp EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEE
Confidence 4677889999999987 578999999985 1 11 3789999999999999998
No 295
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.25 E-value=0.091 Score=42.75 Aligned_cols=106 Identities=17% Similarity=0.193 Sum_probs=66.1
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC-chHHHHHHhhcccC
Q 029836 16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP-ALPLLDQLIQDEKY 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~l~~~~~~~~~ 93 (187)
...+..+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++.. +. ..+.....+ ..+.+..+. .
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~----~ 251 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT----G 251 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc----C
Confidence 344567999999987 888888888864 347999999998888777642 21 112222221 222222221 0
Q ss_pred CCceeEEEEcCCC------------------cccHHHHHHHHhcccCCeEEEEeC
Q 029836 94 HGTFDFVFVDADK------------------DNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 94 ~~~~D~v~~d~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
...+|+|+--... .+....++.+.+.++++|.++.-.
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 2368988753211 123457788889999999888643
No 296
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=96.20 E-value=0.12 Score=39.30 Aligned_cols=111 Identities=11% Similarity=0.099 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHH
Q 029836 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ 86 (187)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~ 86 (187)
...++..+-..++... |...+|+-..+..+++. .-++.++|..|+-....+++|.. ..++++..+|....+..
T Consensus 77 l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~~~l~a 149 (279)
T COG2961 77 LEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGFLALKA 149 (279)
T ss_pred HHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhCC---CcceEEEecCcHHHHhh
Confidence 3344444444444444 78888887777766654 56899999999999999999873 36899999999876655
Q ss_pred HhhcccCCCceeEEEEcCC---CcccHHHHHHHHhccc--CCeEEE
Q 029836 87 LIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVK--VGGVIG 127 (187)
Q Consensus 87 ~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~--~gG~lv 127 (187)
..+. .+.=-+|+||++ +.+|....+.+...++ ++|++.
T Consensus 150 ~LPP---~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~ya 192 (279)
T COG2961 150 HLPP---KERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYA 192 (279)
T ss_pred hCCC---CCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEE
Confidence 4332 345579999998 4556665555544333 445444
No 297
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.17 E-value=0.027 Score=43.51 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=72.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
.++.|+-+|=-.=.+...++..+| .++..||+++..+....+..++.|. ++++.+.-|....+|+-. ..+||
T Consensus 152 ~gK~I~vvGDDDLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~-----~~kFD 223 (354)
T COG1568 152 EGKEIFVVGDDDLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDL-----KRKFD 223 (354)
T ss_pred CCCeEEEEcCchhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHH-----HhhCC
Confidence 456799998433333333344444 6899999999999999999999998 678888888888777654 57999
Q ss_pred EEEEcCCC--cccHHHHHHHHhcccCC---eEEEE
Q 029836 99 FVFVDADK--DNYVNYHKRLIELVKVG---GVIGY 128 (187)
Q Consensus 99 ~v~~d~~~--~~~~~~~~~~~~~L~~g---G~lv~ 128 (187)
+++-|++. .....|+..-...|+.- |++-+
T Consensus 224 vfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgi 258 (354)
T COG1568 224 VFITDPPETIKALKLFLGRGIATLKGEGCAGYFGI 258 (354)
T ss_pred eeecCchhhHHHHHHHHhccHHHhcCCCccceEee
Confidence 99999862 23455555555666655 56554
No 298
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=0.035 Score=46.56 Aligned_cols=112 Identities=12% Similarity=0.053 Sum_probs=79.2
Q ss_pred HHHHHHHHhhcC------CCEEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC
Q 029836 8 AQFFSMLLKLIN------AKNTMEIGVFTGYSLLATALA---IPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG 78 (187)
Q Consensus 8 ~~~l~~l~~~~~------~~~vLeiG~g~G~~~~~l~~~---~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~ 78 (187)
.+++.+|....+ ...|+-+|.|.|-.....+++ ..+.-++++||-+|.++...+. .+-.....+++++.+
T Consensus 350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~ 428 (649)
T KOG0822|consen 350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISS 428 (649)
T ss_pred HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEec
Confidence 445555554422 336788999999877665443 2334689999999999876654 333345579999999
Q ss_pred CchHHHHHHhhcccCCCceeEEEEc-----CCCcccHHHHHHHHhcccCCeEEE
Q 029836 79 PALPLLDQLIQDEKYHGTFDFVFVD-----ADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 79 d~~~~l~~~~~~~~~~~~~D~v~~d-----~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
|+..+-+. .++.|+++.- ++.+--++.++-+.+.|||.|+.|
T Consensus 429 DMR~w~ap-------~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 429 DMRKWNAP-------REQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred cccccCCc-------hhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 99876532 2578988643 234556888999999999999887
No 299
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.03 E-value=0.084 Score=42.15 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=58.2
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
+.++||-+|+| .|..+..+++..+ ..+++++|.+++.++.+++ .|...-+.....+. ...... .+.+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~----~~~~~~---~g~~ 236 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDL----DHYKAE---KGYF 236 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccH----HHHhcc---CCCC
Confidence 56789988875 3445556676653 3479999999988877654 34311111111111 122111 2458
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
|+||--.. ....++.+.+.|++||.++.-..
T Consensus 237 D~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFEVSG---HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CEEEECCC---CHHHHHHHHHHhhcCCEEEEEcc
Confidence 98874322 23456778889999999987553
No 300
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.01 E-value=0.28 Score=37.87 Aligned_cols=111 Identities=9% Similarity=0.010 Sum_probs=66.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC--CCceEEEeCCchHHH-HHHhhcccCCC
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--AHKIDFREGPALPLL-DQLIQDEKYHG 95 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~l-~~~~~~~~~~~ 95 (187)
....|+.+|||.-.-...+ ..+.+.+++-+|. |+.++.-++.+++.+. ..+.+++..|..+.+ ..+...+.+..
T Consensus 81 g~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRL--PWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CCcEEEEeCCccccHHHhc--CCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 3568999999665433333 2232355655555 4566777777776543 357788888876433 33332222122
Q ss_pred ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
..=++++-+. .+.....++.+..+..+|+.++++-+.
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 3334444433 445667888887888899999987543
No 301
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.98 E-value=0.11 Score=39.74 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=59.7
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCC-----CCceEEEe---CCchHHHHHHhhc
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV-----AHKIDFRE---GPALPLLDQLIQD 90 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~-----~~~i~~~~---~d~~~~l~~~~~~ 90 (187)
++.+|||+|+|+|..++.++... ...++..|... .....+.+...++. ...+.+.. +++.+... .
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~-~--- 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSF-R--- 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhh-c---
Confidence 46789999999998888777654 47788877744 33333333332222 11333322 23322211 1
Q ss_pred ccCCCc-eeEEEEcCC---CcccHHHHHHHHhcccCCeEEEE
Q 029836 91 EKYHGT-FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 91 ~~~~~~-~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+. +|+|+.... .+.+......+..+|..++.+.+
T Consensus 159 ---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 159 ---LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred ---cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEE
Confidence 233 899986433 55667777888888888885543
No 302
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.96 E-value=0.3 Score=34.90 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836 4 SPDEAQFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81 (187)
Q Consensus 4 ~~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 81 (187)
++++.+.|...+.. ....+|+-|||=+-+..+ .+......+++..|.+.+. ...+- +...+...+..
T Consensus 8 s~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l--~~~~~~~~~~~Lle~D~RF--------~~~~~-~~F~fyD~~~p 76 (162)
T PF10237_consen 8 SDETAEFLARELLDGALDDTRIACLSTPSLYEAL--KKESKPRIQSFLLEYDRRF--------EQFGG-DEFVFYDYNEP 76 (162)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHH--HhhcCCCccEEEEeecchH--------HhcCC-cceEECCCCCh
Confidence 45555655555544 345689999885544333 2212235789999999753 33332 12444444443
Q ss_pred HHHHHHhhcccCCCceeEEEEcCC--CcccH-HHHHHHHhcccCCeEEEE
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYV-NYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~-~~~~~~~~~L~~gG~lv~ 128 (187)
..++... .++||+|++|++ .++.. .....+..++++++.+++
T Consensus 77 ~~~~~~l-----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 77 EELPEEL-----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred hhhhhhc-----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEE
Confidence 3344322 579999999997 33333 333444456677777764
No 303
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.82 E-value=0.056 Score=43.57 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH
Q 029836 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLP 62 (187)
Q Consensus 7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~ 62 (187)
..++++.+......+.++|+|+|.|+.+.+++-.+ +.+|.+||-+....+.|++
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 35667777777888999999999999999998765 5899999999766555543
No 304
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.80 E-value=0.029 Score=42.19 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=61.5
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC----C-C---EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhh
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPD----D-G---KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQ 89 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~----~-~---~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~ 89 (187)
-++++|+.+..|.|+-.+++.+-. . . .+++||+.+-+ .+ +.+.-+++|... .+..+..
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PI-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------cc-CceEEeecccCCHhHHHHHHH
Confidence 468999999999999998876621 1 1 39999997632 12 345566776532 2222110
Q ss_pred cccCCCceeEEEEcCCCc-----cc---------HHHHHHHHhcccCCeEEEE
Q 029836 90 DEKYHGTFDFVFVDADKD-----NY---------VNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 90 ~~~~~~~~D~v~~d~~~~-----~~---------~~~~~~~~~~L~~gG~lv~ 128 (187)
. ...++.|+|++|+.+. +. ...+......|+|||.+|.
T Consensus 110 h-fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 110 H-FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred H-hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 0 0145899999998621 11 2344444579999999985
No 305
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.79 E-value=0.027 Score=43.78 Aligned_cols=70 Identities=14% Similarity=-0.011 Sum_probs=50.8
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEE
Q 029836 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVF 101 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~ 101 (187)
+++|+.||.|..+.-+... + -..+.++|+++.+++..+.|+... +.++|..++.+.-. ...+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~-----~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF-----IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc-----CCCCCEEE
Confidence 6899999999998887764 2 346899999999998888776421 45667665543210 24689999
Q ss_pred EcCC
Q 029836 102 VDAD 105 (187)
Q Consensus 102 ~d~~ 105 (187)
.+.+
T Consensus 68 ~gpP 71 (275)
T cd00315 68 GGFP 71 (275)
T ss_pred eCCC
Confidence 9865
No 306
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.056 Score=43.30 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=41.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCC-------CCCEEEEEeCCchHHHHHHHHHHHcC
Q 029836 20 AKNTMEIGVFTGYSLLATALAIP-------DDGKILALDITKEHYEKGLPIIQKAG 68 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~-------~~~~v~~vd~~~~~~~~a~~~~~~~~ 68 (187)
+-.++|||+|.|..+..+++.+. ...++..||+|++..+.-++.++...
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 45899999999999999887552 25789999999999998888888764
No 307
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.65 E-value=0.2 Score=39.47 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=60.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
..+..+||..|+| .|..+..+++.. +.++++++.+++..+.+++ .+...-+.....+..+.+... ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~-----~~~ 231 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAG-----LGG 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHh-----cCC
Confidence 3456788888865 467777788775 4679999999887766543 343111111111221222111 145
Q ss_pred ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+|+++--.. ....++.+.+.|+++|.++.-
T Consensus 232 ~~D~vid~~g---~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 232 GFDVIFDFVG---TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CceEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence 7998774221 245677888999999999864
No 308
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=95.64 E-value=0.095 Score=35.66 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=50.2
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (187)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~ 88 (187)
++...++...+..+++|+|.|.=.-....+... +..|+++|+.+.. .+ ..+.++..|..+.-.++
T Consensus 3 ~~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~~-------a~-----~g~~~v~DDif~P~l~i- 67 (127)
T PF03686_consen 3 DFAEYIARLNNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPRK-------AP-----EGVNFVVDDIFNPNLEI- 67 (127)
T ss_dssp HHHHHHHHHS-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S----------------STTEE---SSS--HHH-
T ss_pred hHHHHHHHhCCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECcccc-------cc-----cCcceeeecccCCCHHH-
Confidence 344555666777899999998776544444432 4799999999871 11 34567777776543333
Q ss_pred hcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 89 QDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 89 ~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
-...|+|+.--++.+....+-.+.+. -|.-+++
T Consensus 68 -----Y~~a~lIYSiRPP~El~~~il~lA~~--v~adlii 100 (127)
T PF03686_consen 68 -----YEGADLIYSIRPPPELQPPILELAKK--VGADLII 100 (127)
T ss_dssp -----HTTEEEEEEES--TTSHHHHHHHHHH--HT-EEEE
T ss_pred -----hcCCcEEEEeCCChHHhHHHHHHHHH--hCCCEEE
Confidence 35789999766555555545445443 3445554
No 309
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.62 E-value=0.16 Score=41.00 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=58.8
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
.+.++||-.|+| .|..+..+++..+ ..+|+++|.+++..+.+++ .|.. .++.....++...+.... .+.
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~--~~g 259 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELT--GGG 259 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHh--CCC
Confidence 456788888864 2445555666643 2369999999988776654 3431 122222222222222111 336
Q ss_pred eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+|+||--. .....+..+.+.++++|.++.-..
T Consensus 260 ~d~vid~~---G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 260 VDYAFEMA---GSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCEEEECC---CChHHHHHHHHHHhcCCEEEEEcc
Confidence 89887422 123567777889999999886443
No 310
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.42 E-value=0.026 Score=43.29 Aligned_cols=47 Identities=13% Similarity=0.042 Sum_probs=37.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCchHHHHHHHHHHH
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPD-------DGKILALDITKEHYEKGLPIIQK 66 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~-------~~~v~~vd~~~~~~~~a~~~~~~ 66 (187)
+-+|+|+|+|.|..+..++..+.. ..+++.||++|.+.+..++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999999999887652 25899999999999888888765
No 311
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.41 E-value=0.23 Score=39.67 Aligned_cols=94 Identities=14% Similarity=0.075 Sum_probs=56.3
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
.+.++||-+|+|. |..+..+++......+++++|.+++.++.+++ .+. .... .+ +.. ...
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~-~~~-------~~g 222 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DD-IPE-------DLA 222 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hh-hhh-------ccC
Confidence 3467999999742 22344556542224689999999888777654 221 1111 11 111 224
Q ss_pred eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836 97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+|+||--.........++...++|++||.+++-.
T Consensus 223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 8988732222224567888889999999998754
No 312
>PRK11524 putative methyltransferase; Provisional
Probab=95.40 E-value=0.075 Score=41.53 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=44.9
Q ss_pred HHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH
Q 029836 8 AQFFSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK 66 (187)
Q Consensus 8 ~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~ 66 (187)
.++++.++... ++..|||--+|+|..+....+ + +-+.+|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 46777777654 577999999999987776554 3 46899999999999999999864
No 313
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.37 E-value=0.38 Score=38.56 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=61.9
Q ss_pred hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhcccC
Q 029836 17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEKY 93 (187)
Q Consensus 17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~ 93 (187)
..+.++||-.|+ +.|..+..+++.. +.++++++.+++..+.+++ ..|...-+..... +..+.+....
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~----- 225 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYF----- 225 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHC-----
Confidence 445679999987 4677788888876 4689999988877665542 2344211111111 2222233221
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.+.+|+|+- ..- ...+..+.+.|++||.++.-..
T Consensus 226 ~~gvD~v~d-~vG---~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 226 PEGIDIYFD-NVG---GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CCCcEEEEE-CCC---HHHHHHHHHHhccCCEEEEECc
Confidence 346898883 321 2467788899999999986443
No 314
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=95.33 E-value=0.059 Score=46.01 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=63.8
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH-----HHHHHhhcc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP-----LLDQLIQDE 91 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----~l~~~~~~~ 91 (187)
+.+...|||+||..|.|.--.++.+|.++-|++||+-|-. ..+++..++.|... .+.....
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik------------p~~~c~t~v~dIttd~cr~~l~k~l~-- 107 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK------------PIPNCDTLVEDITTDECRSKLRKILK-- 107 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc------------cCCccchhhhhhhHHHHHHHHHHHHH--
Confidence 3456789999999999999999999988899999997631 11445444444422 2233322
Q ss_pred cCCCceeEEEEcCCCc--------c------cHHHHHHHHhcccCCeEEE
Q 029836 92 KYHGTFDFVFVDADKD--------N------YVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 92 ~~~~~~D~v~~d~~~~--------~------~~~~~~~~~~~L~~gG~lv 127 (187)
..+.|+|+.|+.+. . ....++.+...|+.||.++
T Consensus 108 --t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 108 --TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred --hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 35679999997521 1 1334555567889999954
No 315
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=95.31 E-value=0.057 Score=38.00 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=28.3
Q ss_pred EEccccc--HHHHHHH-hhCCCCCEEEEEeCCchHHHHHHHH--HHHc
Q 029836 25 EIGVFTG--YSLLATA-LAIPDDGKILALDITKEHYEKGLPI--IQKA 67 (187)
Q Consensus 25 eiG~g~G--~~~~~l~-~~~~~~~~v~~vd~~~~~~~~a~~~--~~~~ 67 (187)
|||++.| .++.+++ +...+..+++++|++|..++..+++ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 7999999 6666554 2344478999999999999999888 5544
No 316
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.20 E-value=0.015 Score=47.38 Aligned_cols=65 Identities=17% Similarity=0.044 Sum_probs=57.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCc-eEEEeCCchHHHH
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK-IDFREGPALPLLD 85 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~l~ 85 (187)
..+..|.|+-||.|-.++.++.. +++|++-|.++++++..+.+++.+.+.+. ++++..|+.+++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 35678899999999999988875 58999999999999999999998888766 9999999988884
No 317
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.06 E-value=0.014 Score=45.15 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=60.5
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCce-EEEeCCchHHHHHHhhcccCCCce
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKI-DFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
....++|+|||.|-.+. .. | ...+++.|.+...+..+++ ... .....|+...... ..+|
T Consensus 45 ~gsv~~d~gCGngky~~---~~-p-~~~~ig~D~c~~l~~~ak~--------~~~~~~~~ad~l~~p~~-------~~s~ 104 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG---VN-P-LCLIIGCDLCTGLLGGAKR--------SGGDNVCRADALKLPFR-------EESF 104 (293)
T ss_pred CcceeeecccCCcccCc---CC-C-cceeeecchhhhhcccccc--------CCCceeehhhhhcCCCC-------CCcc
Confidence 45678999999995322 11 2 5689999999887766553 222 4555666544221 5788
Q ss_pred eEEEEcCC------CcccHHHHHHHHhcccCCeEEEE
Q 029836 98 DFVFVDAD------KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 98 D~v~~d~~------~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|.++.-+. .......++++.+.++|||-..+
T Consensus 105 d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 105 DAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 88875433 33456788999999999997654
No 318
>PRK08114 cystathionine beta-lyase; Provisional
Probab=95.05 E-value=1.1 Score=36.78 Aligned_cols=126 Identities=15% Similarity=0.088 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDI-TKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~-~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|....+=+.++.+-.....+-..+|++.+...+...+.++.+|++.+. ........++.+++.|. +++++.....+
T Consensus 61 nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~~ 138 (395)
T PRK08114 61 TLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIGA 138 (395)
T ss_pred ChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHH
Confidence 5666777777777777889999999888877666555555667776543 33455566666777765 56665432223
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc---CCeEEEEeCcCCCcc
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK---VGGVIGYDNTLWGGS 136 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~---~gG~lv~~~~~~~~~ 136 (187)
.+.... .+.-.+|++... +.-....++.+.++.+ +|-.+++||+...+.
T Consensus 139 ~l~~~l-----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~ 192 (395)
T PRK08114 139 DIAKLI-----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV 192 (395)
T ss_pred HHHHhc-----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence 333332 334578888764 2211222333333333 356888888865443
No 319
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.01 E-value=0.31 Score=38.53 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=68.1
Q ss_pred CCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 20 AKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 20 ~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
+.+|.-||.| .|..+.-++..+ ++.|+-+|.+...++.....+. .+++.+-.+...+-... .+.|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v-------~~aD 233 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAV-------KKAD 233 (371)
T ss_pred CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHh-------hhcc
Confidence 4567777776 466666677665 5899999999988877766553 46777776665544333 4678
Q ss_pred EEEEc---CCCcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836 99 FVFVD---ADKDNYVNYHKRLIELVKVGGVIGYDNTLWGG 135 (187)
Q Consensus 99 ~v~~d---~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
+++-. +......-..+++.+.||||++|+=-.+...|
T Consensus 234 lvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGG 273 (371)
T COG0686 234 LVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGG 273 (371)
T ss_pred EEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCC
Confidence 88633 22344555677888999999999643333333
No 320
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.96 E-value=0.33 Score=41.09 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=61.7
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC------------chHHH
Q 029836 18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP------------ALPLL 84 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d------------~~~~l 84 (187)
.++.+++-+|+|. |..+..+++.+ +..|+.+|.+++.++.+++ .|.. .+++-..+ +.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHH
Confidence 3568999999974 45666677766 4679999999987766654 3331 11111000 11111
Q ss_pred H---HHhhcccCCCceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836 85 D---QLIQDEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGG 135 (187)
Q Consensus 85 ~---~~~~~~~~~~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
. ....+. -..+|+||.-.. .....-..++..+.+|+|++++=-.+..+|
T Consensus 235 ~~~~~~~~e~--~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GG 289 (511)
T TIGR00561 235 AAEMELFAAQ--AKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGG 289 (511)
T ss_pred HHHHHHHHHH--hCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCC
Confidence 1 111100 246899975542 222233567778999999998743333333
No 321
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=94.95 E-value=1.2 Score=36.49 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDI-TKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~-~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|....+=+.++.+.....++-..+|.+.++..+...++++.+++..+. -....+..++.++..|. ++.++..+..+
T Consensus 54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~~ 131 (386)
T PF01053_consen 54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDLE 131 (386)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSHH
T ss_pred cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhHH
Confidence 5677777777888888889999999999887777766766677777664 33445566666777665 56666554344
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCe--EEEEeCcC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGG--VIGYDNTL 132 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG--~lv~~~~~ 132 (187)
.+.... .+.-.+||+..+ +.-....++.+.++.++.| .+++||+.
T Consensus 132 ~l~~~l-----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~ 180 (386)
T PF01053_consen 132 ALEAAL-----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTF 180 (386)
T ss_dssp HHHHHH-----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred HHHhhc-----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccc
Confidence 444433 457899999865 3333344555555555544 66667764
No 322
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=94.94 E-value=0.65 Score=36.47 Aligned_cols=98 Identities=10% Similarity=0.005 Sum_probs=60.0
Q ss_pred hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836 17 LINAKNTMEIG--VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 17 ~~~~~~vLeiG--~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
..++.+||-.| .+.|..+..+++.. +.++++++.+++..+.+++ .|. +. ++.....++...+.... .
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga-~~--vi~~~~~~~~~~v~~~~--~ 209 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGF-DA--VFNYKTVSLEEALKEAA--P 209 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCC-CE--EEeCCCccHHHHHHHHC--C
Confidence 44567898887 45666777788875 4689999988877666544 454 22 22222122222221111 3
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+|+|+- ..- ...++..++.|+++|.++.-
T Consensus 210 ~gvd~vld-~~g---~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 210 DGIDCYFD-NVG---GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCcEEEEE-CCC---HHHHHHHHHhhccCCEEEEE
Confidence 46898883 221 24567888999999998753
No 323
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.89 E-value=0.54 Score=37.75 Aligned_cols=103 Identities=18% Similarity=0.132 Sum_probs=59.2
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
..+.++||-.|+| .|..+..+++..+ ..+|++++.+++..+.+++ .|...-+.....+..+.+.... ...
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CCC
Confidence 3456799988864 2445556677653 2369999999887776643 4431111111222222222221 023
Q ss_pred ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.+|+|+- .. .....+..+.+.+++||.+++-..
T Consensus 245 g~d~vid-~~--g~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVID-AV--GRPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEEE-CC--CCHHHHHHHHHHhccCCEEEEECC
Confidence 6898873 32 113456677889999999987554
No 324
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=94.79 E-value=0.41 Score=38.29 Aligned_cols=106 Identities=15% Similarity=0.119 Sum_probs=59.3
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
.+..+||-+|+|. |..+..+++.. +.++++++.+++..+.+++ .|...-+.....+..++.....+.. ....
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t-~~~g 237 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFA-KARG 237 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhc-ccCC
Confidence 4567999999853 55666677765 3589999999988776654 3431111111111122222221110 0124
Q ss_pred eeE---EEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 97 FDF---VFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 97 ~D~---v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+|. +++|.. .....+..+.+.|++||.+++-...
T Consensus 238 ~d~~~d~v~d~~--g~~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 238 LRSTGWKIFECS--GSKPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CCCCcCEEEECC--CChHHHHHHHHHHhcCCeEEEECcC
Confidence 551 344442 2245666778899999999875543
No 325
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=94.78 E-value=0.87 Score=35.89 Aligned_cols=98 Identities=14% Similarity=0.074 Sum_probs=59.6
Q ss_pred hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhcccC
Q 029836 17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEKY 93 (187)
Q Consensus 17 ~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~ 93 (187)
..+..+||-.|. +.|..+..+++.. +.++++++.+++..+.++ +.|...-+..... +..+......
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~----- 204 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKKAS----- 204 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHHhC-----
Confidence 445679998884 5677777888875 468999998887766554 3454111111111 1222222221
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+.+|+|+- ..- ...++..++.|+++|.++.-
T Consensus 205 ~~gvdvv~d-~~G---~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 205 PDGYDCYFD-NVG---GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCCeEEEEE-CCC---HHHHHHHHHHhCcCcEEEEe
Confidence 346898883 321 23457788999999999864
No 326
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.72 E-value=0.63 Score=37.87 Aligned_cols=104 Identities=18% Similarity=0.108 Sum_probs=58.7
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
++.+|+-+|+| .|..+...+..+ +.+|+.+|.+++..+.+...+ +. .+.....+. +.+... -..+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~-~~l~~~------l~~a 231 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNA-YEIEDA------VKRA 231 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCH-HHHHHH------HccC
Confidence 56789999887 555666666665 358999999987665544322 11 122222222 223333 2467
Q ss_pred eEEEEcCC---CcccHHHHHHHHhcccCCeEEEEeCcCCCcc
Q 029836 98 DFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS 136 (187)
Q Consensus 98 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~ 136 (187)
|+|+.... .....-+-+.....+++|++++--.+..+|.
T Consensus 232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~ 273 (370)
T TIGR00518 232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC 273 (370)
T ss_pred CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence 99997542 1111112355667789998876544444444
No 327
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.70 E-value=0.7 Score=36.90 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=62.3
Q ss_pred hcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836 17 LINAKNTMEIGVF--TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 17 ~~~~~~vLeiG~g--~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
..+.++||-.|.. .|..+++|++++. ..++++-.+++..+. .++.|-..-+.+...|..+.+.++.. .
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~----~~~lGAd~vi~y~~~~~~~~v~~~t~----g 209 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLEL----LKELGADHVINYREEDFVEQVRELTG----G 209 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHH----HHhcCCCEEEcCCcccHHHHHHHHcC----C
Confidence 4567899999844 4557778888874 366666666654443 44455433444455555554444421 2
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836 95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
..+|+|+--- -...+....+.|+++|.++.=.
T Consensus 210 ~gvDvv~D~v----G~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 210 KGVDVVLDTV----GGDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred CCceEEEECC----CHHHHHHHHHHhccCCEEEEEe
Confidence 3699998432 2456667788899999887633
No 328
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.70 E-value=0.67 Score=36.77 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=57.5
Q ss_pred CEEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 21 KNTMEIGV--FTGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 21 ~~vLeiG~--g~G~~~~~l~~~~~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
++||-.|+ +.|..+..+++.. +. +|++++.+++..+.+++. .|...-+.....+..+.+..+. ...+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gv 225 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGV 225 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCc
Confidence 78998885 5677777888876 45 799999888766655442 3442111111122222233321 3468
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+|+- ..-. ..+..+++.|+++|.++.
T Consensus 226 d~vid-~~g~---~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 226 DVYFD-NVGG---EISDTVISQMNENSHIIL 252 (345)
T ss_pred eEEEE-CCCc---HHHHHHHHHhccCCEEEE
Confidence 98883 3211 235778889999999885
No 329
>PLN02740 Alcohol dehydrogenase-like
Probab=94.67 E-value=0.7 Score=37.51 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=58.2
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe--CCchHHHHHHhhccc
Q 029836 16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE--GPALPLLDQLIQDEK 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~ 92 (187)
...+.++||-+|+| .|..+..+++..+ ..+|+++|.+++.++.+++ .|...-+.... .+..+.+..+.
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~---- 265 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT---- 265 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh----
Confidence 34456799999874 2334455666653 2379999999988777654 44321111111 01222222221
Q ss_pred CCCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836 93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT 131 (187)
Q Consensus 93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 131 (187)
.+.+|+|+--.. ....+......+++| |.+++-..
T Consensus 266 -~~g~dvvid~~G---~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 266 -GGGVDYSFECAG---NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred -CCCCCEEEECCC---ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 236898874322 235666777788886 87776443
No 330
>PRK13699 putative methylase; Provisional
Probab=94.67 E-value=0.17 Score=38.19 Aligned_cols=56 Identities=7% Similarity=0.078 Sum_probs=43.5
Q ss_pred HHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc
Q 029836 9 QFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA 67 (187)
Q Consensus 9 ~~l~~l~~~--~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~ 67 (187)
++++.++.. .++..|||--||+|..+....+. +-+.+++|++++..+.+.++++..
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 456666543 35679999999999887765543 468999999999999999888764
No 331
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.65 E-value=0.57 Score=37.34 Aligned_cols=103 Identities=20% Similarity=0.277 Sum_probs=58.2
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
.++++||-.|+| .|..+..+++..+ ...+++++.+++..+.+++ .|...-+.....+ .+.+..... ...
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~~----~~~ 228 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVLR----ELR 228 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHhc----CCC
Confidence 356799888864 3334555666653 2347899998887766543 3431111111112 122222211 236
Q ss_pred eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
+|.+++|.. .....+..+.+.|++||.+++-...
T Consensus 229 ~d~~v~d~~--G~~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 229 FDQLILETA--GVPQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred CCeEEEECC--CCHHHHHHHHHHhhcCCEEEEEccC
Confidence 785666653 2245677788999999999875543
No 332
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.46 E-value=0.83 Score=34.45 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=59.8
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
.+..+||..|+|. |..+..+++.. +.++++++.+++..+.+++ .+...-+.....+....+. .. ..+.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~~----~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-LT----GGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-Hh----cCCC
Confidence 5677999999885 66677777765 4789999999877665543 2321111111111211111 11 1457
Q ss_pred eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836 97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
+|+++..... ...+..+.+.|+++|.++.-.
T Consensus 202 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 202 ADVVIDAVGG---PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCEEEECCCC---HHHHHHHHHhcccCCEEEEEc
Confidence 9999864321 145667788899999988643
No 333
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.46 E-value=0.2 Score=35.41 Aligned_cols=95 Identities=17% Similarity=0.083 Sum_probs=57.5
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcC------CCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG------VAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
+|.-+|+|.+..++...-... +.+|+....+++.++..++.-.... ++.++.+ ..|..+.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------T
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------C
Confidence 356678876665544322212 4689999999877766554332111 1134433 34443333 2
Q ss_pred ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..|+|++--+...+..+++.+.+.++++-.++.
T Consensus 69 ~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 69 DADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp T-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred cccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 459999988878889999999999988888874
No 334
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=94.46 E-value=0.15 Score=40.24 Aligned_cols=95 Identities=18% Similarity=0.274 Sum_probs=63.7
Q ss_pred HHHHHHHHhhcC-CC----EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCch
Q 029836 8 AQFFSMLLKLIN-AK----NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81 (187)
Q Consensus 8 ~~~l~~l~~~~~-~~----~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 81 (187)
..++..|+...+ .+ +-+|||+ |.+.++.+.... .+...+++|++......|++++.++++.+.+.+++....
T Consensus 86 ihwI~DLLss~q~~k~~i~~GiDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ 163 (419)
T KOG2912|consen 86 IHWIEDLLSSQQSDKSTIRRGIDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQ 163 (419)
T ss_pred HHHHHHHhhcccCCCcceeeeeeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecch
Confidence 445666665443 22 2467765 677777665432 236789999999999999999999999999999888665
Q ss_pred H-HHHHHhhcccCCCceeEEEEcCC
Q 029836 82 P-LLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 82 ~-~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
. .+.......+ +..||++.++++
T Consensus 164 ktll~d~~~~~~-e~~ydFcMcNPP 187 (419)
T KOG2912|consen 164 KTLLMDALKEES-EIIYDFCMCNPP 187 (419)
T ss_pred hhcchhhhccCc-cceeeEEecCCc
Confidence 4 3333221111 235888887654
No 335
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.43 E-value=0.91 Score=30.44 Aligned_cols=96 Identities=11% Similarity=-0.006 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836 10 FFSMLLKLINAKNTMEIGVFTGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (187)
Q Consensus 10 ~l~~l~~~~~~~~vLeiG~g~G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~ 88 (187)
+...++......+|+|+|.|.=. .+..+++. +..++++|+++.. + + .-++++..|..+.--++
T Consensus 4 ~a~~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~~---a-------~--~g~~~v~DDitnP~~~i- 67 (129)
T COG1255 4 VAEYIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEKT---A-------P--EGLRFVVDDITNPNISI- 67 (129)
T ss_pred HHHHHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEeccccc---C-------c--ccceEEEccCCCccHHH-
Confidence 34455667778899999987655 33334433 4789999998761 1 1 35778888776543333
Q ss_pred hcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEE
Q 029836 89 QDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVI 126 (187)
Q Consensus 89 ~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~l 126 (187)
-...|+|+.--++.+....+-.+.+.++-.-++
T Consensus 68 -----Y~~A~lIYSiRpppEl~~~ildva~aVga~l~I 100 (129)
T COG1255 68 -----YEGADLIYSIRPPPELQSAILDVAKAVGAPLYI 100 (129)
T ss_pred -----hhCccceeecCCCHHHHHHHHHHHHhhCCCEEE
Confidence 356799986544444444443444444333333
No 336
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.35 E-value=0.57 Score=38.24 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=61.0
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhccc-----CC
Q 029836 21 KNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEK-----YH 94 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~-----~~ 94 (187)
.+|--| |.|+.++.++..+.. +.+|+++|+++..++...+ .+..+..-+..+.+.....+++ +.
T Consensus 10 ~~I~Vi--GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~--------G~~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVI--GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR--------GESYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEE--ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC--------CcceeecCcHHHHHHHHHhcCCceEecCh
Confidence 345555 457777776655543 4789999999987765432 2333443344333443332221 01
Q ss_pred ---CceeEEEEcCC------Cc----ccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836 95 ---GTFDFVFVDAD------KD----NYVNYHKRLIELVKVGGVIGYDNTLWGG 135 (187)
Q Consensus 95 ---~~~D~v~~d~~------~~----~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
..-|++++.-+ ++ ......+.+.+.|++|-.+++..+.+.|
T Consensus 80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PG 133 (436)
T COG0677 80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPG 133 (436)
T ss_pred hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 14577665432 11 1244556677899999999998777665
No 337
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.35 E-value=1.2 Score=35.41 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=61.0
Q ss_pred hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC-CchHHHHHHhhccc
Q 029836 16 KLINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDEK 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~--g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~ 92 (187)
...++++||-.|+ +.|..+..+++.. +.+++++..+++..+.+++. .|...-+..... +..+.+....
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~---- 218 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF---- 218 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC----
Confidence 3456789999885 5666777788875 46899988888776665542 343211111111 2222222221
Q ss_pred CCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+|+|+- ..- ...+..+.+.|+++|.++.-
T Consensus 219 -~~gvd~v~d-~~g---~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 219 -PNGIDIYFD-NVG---GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred -CCCcEEEEE-CCC---HHHHHHHHHHhccCcEEEEe
Confidence 346898883 321 24577888999999998853
No 338
>PRK09028 cystathionine beta-lyase; Provisional
Probab=94.34 E-value=2.5 Score=34.78 Aligned_cols=124 Identities=15% Similarity=0.081 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-hHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
|....+=+.++.+.....++-..+|...+...+...+.++.+|+..+..- .....+...++..|. ++.++..+..+.
T Consensus 61 pt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~ 138 (394)
T PRK09028 61 PTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEG 138 (394)
T ss_pred chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHH
Confidence 44445555566555556777777777665555444455567888887654 333444455555554 445554333333
Q ss_pred HHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCCCc
Q 029836 84 LDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLWGG 135 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~~ 135 (187)
+.... ...-.+|++..+ +......++.+.++.+. |.++++|++...+
T Consensus 139 l~~~l-----~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p 188 (394)
T PRK09028 139 IRELI-----RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASP 188 (394)
T ss_pred HHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 44332 334578888754 33334556666666665 4566677776544
No 339
>PLN02827 Alcohol dehydrogenase-like
Probab=94.26 E-value=0.72 Score=37.47 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=57.4
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe--CCchHHHHHHhhcccC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE--GPALPLLDQLIQDEKY 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~ 93 (187)
..+.++||-.|+| .|..+..+++..+ ...+++++.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~----- 260 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT----- 260 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh-----
Confidence 4457799988864 3334455666653 2468899988887766543 45411111111 01122222221
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT 131 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 131 (187)
.+.+|+|+--. .....+..+.+.+++| |.+++-..
T Consensus 261 ~~g~d~vid~~---G~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 261 GGGADYSFECV---GDTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCCCCEEEECC---CChHHHHHHHHhhccCCCEEEEECC
Confidence 23689887422 2234566778889998 99986443
No 340
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.26 E-value=0.25 Score=41.10 Aligned_cols=95 Identities=12% Similarity=0.012 Sum_probs=63.4
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH-HHHHhhcccCCCceeEE
Q 029836 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDEKYHGTFDFV 100 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~~D~v 100 (187)
+++.+|||.--....+-+.. -..++.+|+|+-.++.....-. ...+..++..+|.... ++ +++||+|
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l~fe--------dESFdiV 118 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQLVFE--------DESFDIV 118 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhccCC--------CcceeEE
Confidence 79999998876666555432 3679999999988775544332 1224567777777543 22 5788888
Q ss_pred EEcCC-------------CcccHHHHHHHHhcccCCeEEEE
Q 029836 101 FVDAD-------------KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 101 ~~d~~-------------~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+.=+. .......+..+.++|++||.++.
T Consensus 119 IdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 119 IDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred EecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 64322 11334567788899999998654
No 341
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.98 E-value=0.35 Score=30.87 Aligned_cols=85 Identities=11% Similarity=0.037 Sum_probs=52.1
Q ss_pred EEEEcccccHHHHHHHhhCC-CC---CEEEEE-eCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 23 TMEIGVFTGYSLLATALAIP-DD---GKILAL-DITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 23 vLeiG~g~G~~~~~l~~~~~-~~---~~v~~v-d~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
|--||+ |..+..++..+- .+ .+++.+ +.+++..+...+.+ .+.+...+..+.+. ..
T Consensus 2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~----------~a 62 (96)
T PF03807_consen 2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY-------GVQATADDNEEAAQ----------EA 62 (96)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC-------TTEEESEEHHHHHH----------HT
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh-------ccccccCChHHhhc----------cC
Confidence 445655 555555544331 12 688844 99998776554433 23444434544443 35
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
|+||+--++....+.++.+ ..+.++..++
T Consensus 63 dvvilav~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 63 DVVILAVKPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp SEEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred CEEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence 9999988888899999888 6677777765
No 342
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.82 E-value=1.4 Score=32.56 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=45.4
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEe
Q 029836 18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFRE 77 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~ 77 (187)
.+..+|+-+|||. |......+...+ -++++.+|.+. ...+.+.+.+++.+-.-+++.+.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 4667899999973 443333333322 46899999872 34455566666654323444444
Q ss_pred CCchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836 78 GPALP-LLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 78 ~d~~~-~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
..... .+..+ -..+|+|+.-.+
T Consensus 98 ~~i~~~~~~~~------~~~~D~Vi~~~d 120 (202)
T TIGR02356 98 ERVTAENLELL------INNVDLVLDCTD 120 (202)
T ss_pred hcCCHHHHHHH------HhCCCEEEECCC
Confidence 33322 22333 247899886544
No 343
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=93.78 E-value=3.1 Score=33.91 Aligned_cols=126 Identities=14% Similarity=0.068 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchH-HHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEH-YEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~-~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|....+=+.++.....+.++-..+|++.....+...+.++.+|+..+..-.. ...+...++..|. +++++..+..+
T Consensus 49 nPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi--~v~~~d~~~~e 126 (377)
T TIGR01324 49 TLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGV--DITYYDPLIGE 126 (377)
T ss_pred CccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHH
Confidence 35555666666666667788878777776665554445556778776655432 2333344455554 34444322223
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCCCcc
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLWGGS 136 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~~~ 136 (187)
.+.... .....+|++... .......++.+.++.++ |.++++|++...+.
T Consensus 127 ~l~~~i-----~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~ 178 (377)
T TIGR01324 127 DIATLI-----QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGL 178 (377)
T ss_pred HHHHhc-----CCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 333322 345678887654 33344556666665555 55677788765443
No 344
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.74 E-value=0.99 Score=35.77 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=56.6
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGK-ILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~-v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
..+.++||-+|+| .|..+..+++.. +.+ +++++.+++..+.+++ .|...-+.....+ .+.+..... .
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~~----~ 229 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELTS----G 229 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHhC----C
Confidence 3456789888764 333445566665 345 9999998887766543 3431111111112 222222210 2
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836 95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
..+|+||--.. ....+....+.|+++|.+++-.
T Consensus 230 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 230 AGADVAIECSG---NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEEc
Confidence 36998884322 2344566778999999998643
No 345
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.73 E-value=1.9 Score=33.37 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=57.9
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
+.++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++ .|.. . .+-..+..+.+..+. ....+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~-~-~i~~~~~~~~~~~~~----~~~g~ 188 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGAT-A-LAEPEVLAERQGGLQ----NGRGV 188 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCc-E-ecCchhhHHHHHHHh----CCCCC
Confidence 56789988874 3445556676653 2358999988887766654 3431 1 111111112222221 02468
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
|+++--.. ....++.+.+.++++|.++.-...
T Consensus 189 d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 189 DVALEFSG---ATAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CEEEECCC---ChHHHHHHHHHhcCCCEEEEeccC
Confidence 98874321 245677788899999999875543
No 346
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.72 E-value=1.4 Score=36.49 Aligned_cols=88 Identities=10% Similarity=0.049 Sum_probs=56.0
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
...++|+-+|+|. |......++.+ +.+|+.+|.++.....|++ .|. +.. +.. .. -..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~----e~------v~~ 257 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TME----EA------VKE 257 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHH----HH------HcC
Confidence 3578999999974 54555556655 4689999999987776654 333 111 111 11 124
Q ss_pred eeEEEEcCCCcccHHHHHHH-HhcccCCeEEEEeC
Q 029836 97 FDFVFVDADKDNYVNYHKRL-IELVKVGGVIGYDN 130 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~-~~~L~~gG~lv~~~ 130 (187)
.|+|+.-. .....+... .+.+++||+++.-.
T Consensus 258 aDVVI~at---G~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 258 GDIFVTTT---GNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCEEEECC---CCHHHHHHHHHhcCCCCcEEEEeC
Confidence 69888543 234455544 78999999997643
No 347
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.63 E-value=0.78 Score=36.08 Aligned_cols=69 Identities=12% Similarity=-0.004 Sum_probs=49.7
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEE
Q 029836 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVF 101 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~ 101 (187)
+++|+-||.|....-+..+. -..+.++|+++.+.+.-+.|+. ....+|..+.-.... .+.+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l-----~~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL-----PKDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH-----HHT-SEEE
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc-----cccceEEE
Confidence 68999999999999888762 2468999999999988888883 677788876543321 11589998
Q ss_pred EcCC
Q 029836 102 VDAD 105 (187)
Q Consensus 102 ~d~~ 105 (187)
...+
T Consensus 67 ggpP 70 (335)
T PF00145_consen 67 GGPP 70 (335)
T ss_dssp EE--
T ss_pred eccC
Confidence 8755
No 348
>PRK05967 cystathionine beta-lyase; Provisional
Probab=93.63 E-value=3.5 Score=33.95 Aligned_cols=122 Identities=12% Similarity=0.102 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHH-HHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHY-EKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~-~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|....+-+.++.+......+-+.+|.+.+...+...+.++.+|+..+..-... ..+++.++..|. +++++..+..+
T Consensus 63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e 140 (395)
T PRK05967 63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA 140 (395)
T ss_pred ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence 455555555555655566677788887776666655566667888877654433 334455666665 56666544333
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCe-EEEEeCcC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGG-VIGYDNTL 132 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~ 132 (187)
.+.... .+.-.+|++..+ +.-....++.+.++.++.| ++++|++.
T Consensus 141 ~l~~al-----~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 141 GIAKLM-----RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence 344432 344678888754 3334555666666666554 56666664
No 349
>PRK05939 hypothetical protein; Provisional
Probab=93.58 E-value=3.4 Score=33.98 Aligned_cols=122 Identities=13% Similarity=0.115 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
+|.+..+=+.++.....+..+-+.+|...+...+...+.++.+|+..+..-.........++..|. ++.++..+-.+.
T Consensus 46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~--~v~~v~~~d~e~ 123 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGV--EVTMVDATDVQN 123 (397)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCC--EEEEECCCCHHH
Confidence 466777777788877887888888887666655544455566787766543222121233555554 455554322233
Q ss_pred HHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcC
Q 029836 84 LDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTL 132 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~ 132 (187)
+.... .+.-.+|++... +......++.+.++.+. |.++++|++.
T Consensus 124 l~~~l-----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 124 VAAAI-----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHhC-----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 33332 344567877643 22333445566665555 4456666654
No 350
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=93.55 E-value=1.5 Score=35.37 Aligned_cols=102 Identities=19% Similarity=0.274 Sum_probs=58.2
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe--CCchHHHHHHhhcccC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE--GPALPLLDQLIQDEKY 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~ 93 (187)
..+.++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~----- 252 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT----- 252 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh-----
Confidence 3456799998874 2445566777653 2379999999988776644 34321111111 01112222221
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT 131 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 131 (187)
.+.+|+++--.. ....+..+.+.+++| |.++.-..
T Consensus 253 ~~g~d~vid~~G---~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 253 DGGVDYSFECIG---NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCCEEEECCC---CHHHHHHHHHHhhcCCCeEEEEec
Confidence 236898874321 244567778889886 88775443
No 351
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.52 E-value=1.2 Score=35.18 Aligned_cols=108 Identities=12% Similarity=0.123 Sum_probs=69.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC--CceEEEeCCch-H-HHHHHhhcccCCC
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--HKIDFREGPAL-P-LLDQLIQDEKYHG 95 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~-~-~l~~~~~~~~~~~ 95 (187)
...|+.+|||.- +...=-..+.+.++.-+|. |+.++.-++.++..+.. ...+.+..|.. + +...+.+.+.+..
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 679999999654 3332111122467777776 67777777888877642 36788888887 3 4455554332233
Q ss_pred ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeC
Q 029836 96 TFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 96 ~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
..=+++.-+- .+....+|+.+..+..+|..++++-
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 3334444432 4567789999999998888888764
No 352
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.42 E-value=1.6 Score=34.94 Aligned_cols=96 Identities=11% Similarity=0.093 Sum_probs=56.5
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeC---CchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccC
Q 029836 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDI---TKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKY 93 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~---~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~ 93 (187)
.++.+||-+|+| .|..+..+++.. +.++++++. +++..+.++ +.|.. .+.....+..+ .. .
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~----~~-~--- 235 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAE----VK-L--- 235 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhh----hh-h---
Confidence 356799999875 345666677765 358999987 455555443 34441 12111111111 10 1
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.+.+|+||--.. ....+....+.|++||.+++-..
T Consensus 236 ~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 236 VGEFDLIIEATG---VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred cCCCCEEEECcC---CHHHHHHHHHHccCCcEEEEEec
Confidence 346898875332 23467788899999999886544
No 353
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=93.41 E-value=2.2 Score=35.12 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDI-TKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~-~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|...++-+.++.....+..+-.++|.......+...+.++.+|+..+. .........+.++..|. ++.++..+..+
T Consensus 69 ~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 146 (403)
T PRK07810 69 NPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV--ETVFVDGEDLS 146 (403)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence 4666777788888888889999999888766655444454567766553 22334444555555554 45555443223
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 133 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 133 (187)
.+.... ...-.+|++..+ +......++.+.++.++ |-.+++|++..
T Consensus 147 ~l~~ai-----~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 147 QWEEAL-----SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence 333332 234578887543 22222224444444444 45677777754
No 354
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.40 E-value=0.49 Score=38.67 Aligned_cols=83 Identities=24% Similarity=0.218 Sum_probs=51.5
Q ss_pred CEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCCc
Q 029836 21 KNTMEIGVFTGYSLLATALAIPD--DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHGT 96 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~ 96 (187)
++||-||| |..+...+..+.. +.+|+..|.+++..+.+..... .+++..+-|+.+. +..+. ..
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li------~~ 68 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI------KD 68 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH------hc
Confidence 57999999 5555555444322 3799999999888776655432 3777887777653 33332 34
Q ss_pred eeEEEEcCCCcccHHHHHHH
Q 029836 97 FDFVFVDADKDNYVNYHKRL 116 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~ 116 (187)
+|+|+.-.+......+++.|
T Consensus 69 ~d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 69 FDLVINAAPPFVDLTILKAC 88 (389)
T ss_pred CCEEEEeCCchhhHHHHHHH
Confidence 59998766533333444433
No 355
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.24 E-value=1.2 Score=35.66 Aligned_cols=98 Identities=14% Similarity=0.017 Sum_probs=65.8
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC-cee
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG-TFD 98 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~-~~D 98 (187)
..+++|+-||.|...+-+..+. -.-+.++|+++.+++.-+.|+.. ..+...|..+...... .. .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCC
Confidence 4589999999999988877652 24679999999998887777742 4556666665443321 12 689
Q ss_pred EEEEcCCCcc----------------cHHHHHHHHhcccCCeEEEEeCc
Q 029836 99 FVFVDADKDN----------------YVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 99 ~v~~d~~~~~----------------~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
+++...+.+. ..-.+..+...++| -++++.|+
T Consensus 70 vligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV 117 (328)
T COG0270 70 VLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENV 117 (328)
T ss_pred EEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecC
Confidence 9987755221 12233445567778 77777776
No 356
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.21 E-value=1.9 Score=34.31 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=60.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
..+.++||-.|+| .|..+..+++..+ ...+++++.+++..+.+++ .|...-+.....+..+.+..+.. ..
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~----~~ 234 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTG----GK 234 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhC----CC
Confidence 4456788888765 4455666777653 3469999999877766553 44321111111222222222210 24
Q ss_pred ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.+|+++-... ....+..+++.|+++|.++.-+.
T Consensus 235 ~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 235 GVDAVIIAGG---GQDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCcEEEECCC---CHHHHHHHHHHhhcCCEEEEecc
Confidence 6898874322 13567788899999998886443
No 357
>PRK06234 methionine gamma-lyase; Provisional
Probab=93.16 E-value=3.3 Score=33.99 Aligned_cols=123 Identities=14% Similarity=0.109 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeC-Cch
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREG-PAL 81 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~-d~~ 81 (187)
+|...++-+.++.....+.++-+++|++.+...+...+.++.+|+..+..-. ........++..|. ++.++.. |..
T Consensus 63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd~~d~e 140 (400)
T PRK06234 63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV--EVTFVDTSNLE 140 (400)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe--EEEEECCCCHH
Confidence 4566677777777777777888888877665555444554567766554222 22223333444443 4444433 333
Q ss_pred HHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC---CeEEEEeCcCCC
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV---GGVIGYDNTLWG 134 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~---gG~lv~~~~~~~ 134 (187)
++...+ ...-.+|++..+ +.....-++.+.++.+. |-++++|+++..
T Consensus 141 ~l~~~i------~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~ 192 (400)
T PRK06234 141 EVRNAL------KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCT 192 (400)
T ss_pred HHHHHh------ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCc
Confidence 333323 234578886643 22112223444444443 778888887643
No 358
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.16 E-value=0.84 Score=33.56 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=52.7
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhc
Q 029836 11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD 90 (187)
Q Consensus 11 l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~ 90 (187)
+........++++|-+|++. ++.+.+..+....+|+.+|++|.+... ++++++|..+ ..+ .
T Consensus 36 i~~~~~~~E~~~vli~G~Yl--tG~~~a~~Ls~~~~vtv~Di~p~~r~~---------lp~~v~Fr~~--~~~---~--- 96 (254)
T COG4017 36 IRDFLEGEEFKEVLIFGVYL--TGNYTAQMLSKADKVTVVDIHPFMRGF---------LPNNVKFRNL--LKF---I--- 96 (254)
T ss_pred hhhhhcccCcceEEEEEeee--hhHHHHHHhcccceEEEecCCHHHHhc---------CCCCccHhhh--cCC---C---
Confidence 33333455788999999863 334444555446899999999865322 3356666543 111 1
Q ss_pred ccCCCceeEEEEcCC-CcccHHHHHHHHhcccCCeEEEEeC
Q 029836 91 EKYHGTFDFVFVDAD-KDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 91 ~~~~~~~D~v~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.+.+|+|+=--. -.-.++++ +.++|+-.+ +.|
T Consensus 97 ---~G~~DlivDlTGlGG~~Pe~L----~~fnp~vfi-VEd 129 (254)
T COG4017 97 ---RGEVDLIVDLTGLGGIEPEFL----AKFNPKVFI-VED 129 (254)
T ss_pred ---CCceeEEEeccccCCCCHHHH----hccCCceEE-EEC
Confidence 578899873222 12223433 345565544 444
No 359
>PRK06940 short chain dehydrogenase; Provisional
Probab=93.14 E-value=1.8 Score=33.41 Aligned_cols=81 Identities=20% Similarity=0.191 Sum_probs=49.9
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCCcee
Q 029836 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHGTFD 98 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~~D 98 (187)
+.+|-.|+ |.++..+++.+..+.+|+.++.+++.++.+.+.++..+ .++.++..|..+. +..+.+.....+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 35666664 56888888877656899999998776665555555433 3677777766432 222221110135789
Q ss_pred EEEEcCC
Q 029836 99 FVFVDAD 105 (187)
Q Consensus 99 ~v~~d~~ 105 (187)
.++....
T Consensus 79 ~li~nAG 85 (275)
T PRK06940 79 GLVHTAG 85 (275)
T ss_pred EEEECCC
Confidence 9987653
No 360
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=93.04 E-value=4.1 Score=33.35 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeC-Cch
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREG-PAL 81 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~-d~~ 81 (187)
+|....+-+.++.......++-.++|...+...+...+.++.+|+..+..-. ............+. ++.++.. |..
T Consensus 51 ~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~e 128 (386)
T PRK08045 51 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVDQGDEQ 128 (386)
T ss_pred CccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe--EEEEeCCCCHH
Confidence 4566777777877766667777777776665555444555667777766544 23333333333222 3444332 232
Q ss_pred HHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCCC
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLWG 134 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~ 134 (187)
+ +.... ....++|++..+ +.....-++.+.++.+. |.++++|++...
T Consensus 129 ~-l~~~l-----~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~ 178 (386)
T PRK08045 129 A-LRAAL-----AEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLS 178 (386)
T ss_pred H-HHHhc-----ccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 2 33322 235578887644 21111113333333333 667788888643
No 361
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=93.01 E-value=0.71 Score=36.53 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=26.0
Q ss_pred CceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEE
Q 029836 95 GTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 95 ~~~D~v~~d~~---~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+.||+|+..-. .....++++.+.+.|+|||+-|=
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe
Confidence 46898854321 45678899999999999998873
No 362
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=93.01 E-value=2.4 Score=34.20 Aligned_cols=102 Identities=18% Similarity=0.288 Sum_probs=58.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC--CchHHHHHHhhcccC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG--PALPLLDQLIQDEKY 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~l~~~~~~~~~ 93 (187)
..++++||-+|+| .|..+..+++..+ ..++++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~----- 253 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT----- 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh-----
Confidence 4457889988864 3345555676653 2379999999988776643 443211111111 1222222221
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT 131 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 131 (187)
.+.+|+|+--.. ....+..+.+.++++ |.++.-..
T Consensus 254 ~~g~d~vid~~g---~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 254 DGGVDYTFECIG---NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCCCcEEEECCC---ChHHHHHHHHhhccCCCeEEEEcc
Confidence 346898884221 234667778889887 87776443
No 363
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.00 E-value=2.1 Score=34.42 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=47.0
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc---------------------hHHHHHHHHHHHcCCCCceEEE
Q 029836 19 NAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITK---------------------EHYEKGLPIIQKAGVAHKIDFR 76 (187)
Q Consensus 19 ~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~---------------------~~~~~a~~~~~~~~~~~~i~~~ 76 (187)
+..+|+-||||. |......+...+ -++++.+|.+. ...+.+++.+++.+-.-+++.+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 567899999973 333333222222 36899999874 2345566777766543455556
Q ss_pred eCCch-HHHHHHhhcccCCCceeEEEEcCC
Q 029836 77 EGPAL-PLLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 77 ~~d~~-~~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
..+.. +.+..+ -..+|+|+.-.+
T Consensus 102 ~~~~~~~~~~~~------~~~~DlVid~~D 125 (338)
T PRK12475 102 VTDVTVEELEEL------VKEVDLIIDATD 125 (338)
T ss_pred eccCCHHHHHHH------hcCCCEEEEcCC
Confidence 55543 233333 346899886554
No 364
>PRK08064 cystathionine beta-lyase; Provisional
Probab=92.99 E-value=3.2 Score=33.98 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|...++-+.++.....+..+-+++|...+...+. .+.++.+|+..+..-. ......+.++..|. ++.++..+..+
T Consensus 53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~ 129 (390)
T PRK08064 53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGI--EHTFVDMTNLE 129 (390)
T ss_pred ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCC--EEEEECCCCHH
Confidence 56677777778777666566667777665544443 4444567877665332 33344444555554 45555433223
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 133 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 133 (187)
.+.... ...-.+|++..+ +......++.+.++.+. |.++++|++..
T Consensus 130 ~l~~~l-----~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~ 178 (390)
T PRK08064 130 EVAQNI-----KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFL 178 (390)
T ss_pred HHHHhc-----CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCC
Confidence 333221 334578887654 22222223344443443 55677777643
No 365
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.97 E-value=0.095 Score=34.75 Aligned_cols=39 Identities=15% Similarity=0.514 Sum_probs=27.7
Q ss_pred ceeEEEEcCC---------CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836 96 TFDFVFVDAD---------KDNYVNYHKRLIELVKVGGVIGYDNTLWG 134 (187)
Q Consensus 96 ~~D~v~~d~~---------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
+||+|++-.. .+....+|+.+..+|+|||++|+.---|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~ 48 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWK 48 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcH
Confidence 4888887543 24467899999999999999998655553
No 366
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.93 E-value=0.79 Score=36.05 Aligned_cols=88 Identities=9% Similarity=0.021 Sum_probs=53.6
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
+.+++|-+|+| .|..+..+++..+ ...++++|.+++.++.+.+. .++ +..+. . ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----------~~i--~~~~~---~------~~g~ 201 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----------EVL--DPEKD---P------RRDY 201 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----------ccc--Chhhc---c------CCCC
Confidence 45689888865 4556666777654 34577788887766555431 011 11110 1 3468
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
|+||-.. .....++.+.+.|+++|.+++-..
T Consensus 202 Dvvid~~---G~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 202 RAIYDAS---GDPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CEEEECC---CCHHHHHHHHHhhhcCcEEEEEee
Confidence 9887322 223456778889999999986443
No 367
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.88 E-value=1.1 Score=36.54 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=72.1
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHH-------HHHHHcCC-CCceEEEeCCchHH-
Q 029836 13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGL-------PIIQKAGV-AHKIDFREGPALPL- 83 (187)
Q Consensus 13 ~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~-------~~~~~~~~-~~~i~~~~~d~~~~- 83 (187)
.-+...+.....|+|+|.|......+.... ...-+|+|+....-..+. +..+-.|- ...++.++++..+.
T Consensus 186 dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~ 264 (419)
T KOG3924|consen 186 DELKLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPK 264 (419)
T ss_pred HHhccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHH
Confidence 334566778999999999999888776543 456677887654433332 23333444 35678888887652
Q ss_pred -HHHHhhcccCCCceeEEEEcCCCcc--cHHHHHHHHhcccCCeEEEEeCcC
Q 029836 84 -LDQLIQDEKYHGTFDFVFVDADKDN--YVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 84 -l~~~~~~~~~~~~~D~v~~d~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
...+ ....++||+....-+ ..--.+++...+++|..++-.+-+
T Consensus 265 ~v~eI------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L 310 (419)
T KOG3924|consen 265 RVTEI------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPL 310 (419)
T ss_pred HHHHH------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccccc
Confidence 3333 346789998765322 222334777888999999854444
No 368
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=92.82 E-value=0.25 Score=37.08 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=46.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
...-|.+||.|.|.++..++.+- ..++..||.++..+.-.+-.-+.. +.+..++++|+..+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcC--CcceEEecccccee
Confidence 34579999999999999999763 478999999998886655433322 25788888888653
No 369
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=92.77 E-value=3.3 Score=33.35 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=53.9
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
+.++||-.|+| .|..+..+++.. +.++++++.+++....+ .++.|.. .++.....+.+... .+.+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~------~~~~ 248 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAA------IGTM 248 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhh------cCCC
Confidence 56788888874 344556667765 46788888776543322 2334431 12211111222222 2358
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
|+||- .. .....+..+.+.|++||.++.-.
T Consensus 249 D~vid-~~--g~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 249 DYIID-TV--SAVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CEEEE-CC--CCHHHHHHHHHHhcCCcEEEEeC
Confidence 98883 21 12346777889999999988644
No 370
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.71 E-value=0.11 Score=34.33 Aligned_cols=34 Identities=9% Similarity=0.094 Sum_probs=26.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE 55 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~ 55 (187)
+....+|||||.|....-|... +.+-.++|....
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~R 91 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARRR 91 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCccccccccc
Confidence 3558999999999988777654 466788888654
No 371
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.70 E-value=0.79 Score=32.88 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=58.2
Q ss_pred EcccccHHHHHHHhhCCCCCEEEEEe--CCchHHH---HHHHHHHHcCCCCceEEEe-CCchHHHHHHhhcccCCCceeE
Q 029836 26 IGVFTGYSLLATALAIPDDGKILALD--ITKEHYE---KGLPIIQKAGVAHKIDFRE-GPALPLLDQLIQDEKYHGTFDF 99 (187)
Q Consensus 26 iG~g~G~~~~~l~~~~~~~~~v~~vd--~~~~~~~---~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~~D~ 99 (187)
+|=|.=..++.+++.++....+++.- ...+..+ .+.++++.... ..+++.+ -|+...-.... . ..+.||.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~-~--~~~~FDr 78 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFR-L--KNQRFDR 78 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCccccccc-c--cCCcCCE
Confidence 45556667777888776445565544 4433333 23355555422 3344433 35543322210 0 1578999
Q ss_pred EEEcCCCcc----------------cHHHHHHHHhcccCCeEEEEe
Q 029836 100 VFVDADKDN----------------YVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 100 v~~d~~~~~----------------~~~~~~~~~~~L~~gG~lv~~ 129 (187)
|+..-++.. ...+|..+.++|+++|.+.+.
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 998765222 256888899999999998874
No 372
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=92.70 E-value=2.2 Score=34.89 Aligned_cols=122 Identities=14% Similarity=0.097 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
+|...++=+.++.....+.++-.++|+......+...+.++.+|+..+..-......-+.++..|. ++.+...+..++
T Consensus 52 np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~--~v~~~~~d~~~l 129 (385)
T PRK08574 52 NPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV--KVVLAYPSTEDI 129 (385)
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc--EEEEECCCHHHH
Confidence 345666666677777777888888877666555544455456676665544333222222333343 444444444333
Q ss_pred HHHHhhcccCCC-ceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836 84 LDQLIQDEKYHG-TFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 133 (187)
Q Consensus 84 l~~~~~~~~~~~-~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 133 (187)
...+ .. ...+|++... +.....-++.+.++.+. |..+++|++..
T Consensus 130 ~~~i------~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a 177 (385)
T PRK08574 130 IEAI------KEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFA 177 (385)
T ss_pred HHhc------CccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCC
Confidence 3332 23 5678887643 21111123444444444 55777787753
No 373
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=92.66 E-value=0.58 Score=36.14 Aligned_cols=75 Identities=16% Similarity=0.082 Sum_probs=47.5
Q ss_pred HHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC
Q 029836 7 EAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIP----DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP 79 (187)
Q Consensus 7 ~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~l~~~~~----~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d 79 (187)
+.+++..+.. +.+...++|+|||.|..+.+++..++ +...++.||-..... .+...++.......++=+..|
T Consensus 3 qsSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riD 81 (259)
T PF05206_consen 3 QSSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRID 81 (259)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEE
Confidence 4456666654 23556899999999999999999884 246899999865433 333444443321234444455
Q ss_pred chH
Q 029836 80 ALP 82 (187)
Q Consensus 80 ~~~ 82 (187)
..+
T Consensus 82 I~d 84 (259)
T PF05206_consen 82 IKD 84 (259)
T ss_pred eec
Confidence 544
No 374
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=92.62 E-value=0.41 Score=29.52 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=21.8
Q ss_pred hcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCC
Q 029836 17 LINAKNTMEIGVFTGY-SLLATALAIPDDGKILALDIT 53 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~-~~~~l~~~~~~~~~v~~vd~~ 53 (187)
...|++||-||+.+|+ .+..++.++..++..++|-.+
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 3567999999999998 444456555546777776554
No 375
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.60 E-value=0.19 Score=40.59 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=67.6
Q ss_pred HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcc
Q 029836 12 SMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDE 91 (187)
Q Consensus 12 ~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~ 91 (187)
..++...++.+|+|+.|..|..|..++..+...+++.++|.++...+..++.++..|. ..++...+|+... +...
T Consensus 206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~-~~~~~~~~df~~t-~~~~--- 280 (413)
T KOG2360|consen 206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV-SIVESVEGDFLNT-ATPE--- 280 (413)
T ss_pred hhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC-CccccccccccCC-CCcc---
Confidence 3445555678999999999999999998877679999999999999999999999988 4667778888654 2110
Q ss_pred cCCCceeEEEEcCC
Q 029836 92 KYHGTFDFVFVDAD 105 (187)
Q Consensus 92 ~~~~~~D~v~~d~~ 105 (187)
+-...-.|++|+.
T Consensus 281 -~~~~v~~iL~Dps 293 (413)
T KOG2360|consen 281 -KFRDVTYILVDPS 293 (413)
T ss_pred -cccceeEEEeCCC
Confidence 0234567777765
No 376
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.59 E-value=2 Score=35.60 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=71.7
Q ss_pred CCEEEEEcc-cccHH------HHHHHhhCCCCCEEEEEeCC-chHHHHHHHHHHHcCCCCceEEEeC----CchHHHHHH
Q 029836 20 AKNTMEIGV-FTGYS------LLATALAIPDDGKILALDIT-KEHYEKGLPIIQKAGVAHKIDFREG----PALPLLDQL 87 (187)
Q Consensus 20 ~~~vLeiG~-g~G~~------~~~l~~~~~~~~~v~~vd~~-~~~~~~a~~~~~~~~~~~~i~~~~~----d~~~~l~~~ 87 (187)
|..|+=+|- |+|-. +.++.+ .....-+++.|.. |.++++.+....+.+. .|+.. |+.+.....
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v----~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGV----PFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCC----ceecCCCCCCHHHHHHHH
Confidence 456777763 34433 333333 1223457888874 5566777777766554 34332 333332221
Q ss_pred hhcccCCCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEeCcCCCccccCCCCCCchhhhhhHHHHHHHHHHH
Q 029836 88 IQDEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKA 162 (187)
Q Consensus 88 ~~~~~~~~~~D~v~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (187)
.+.- ....||+|++|-. .+...+.+..+...++|.=+|++-|...+ +......+.|++.
T Consensus 175 l~~a-k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---------------QdA~~~A~aF~e~ 238 (451)
T COG0541 175 LEKA-KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---------------QDAVNTAKAFNEA 238 (451)
T ss_pred HHHH-HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---------------hHHHHHHHHHhhh
Confidence 1100 1457999999965 23345566677789999998888776543 3455667777776
Q ss_pred Hh
Q 029836 163 LA 164 (187)
Q Consensus 163 ~~ 164 (187)
+-
T Consensus 239 l~ 240 (451)
T COG0541 239 LG 240 (451)
T ss_pred cC
Confidence 63
No 377
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=92.56 E-value=1.1 Score=37.47 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=55.1
Q ss_pred hhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEE------EEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHh
Q 029836 16 KLINAKNTMEIGVFTGYSLLATALAIPD-DGKIL------ALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~------~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~ 88 (187)
...+.++|+-||||+ .+...+..+.. +.+|+ ++|......+.|.+ .|+ ..++..+.++
T Consensus 32 ~~LkgKtIaIIGyGS--qG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~----dGF------~v~~~~Ea~~--- 96 (487)
T PRK05225 32 SYLKGKKIVIVGCGA--QGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE----NGF------KVGTYEELIP--- 96 (487)
T ss_pred HHhCCCEEEEEccCH--HHHHHhCCCccccceeEEeccccccccccchHHHHHh----cCC------ccCCHHHHHH---
Confidence 345779999999954 44433333321 23444 34444444443332 343 1234444433
Q ss_pred hcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836 89 QDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 89 ~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
..|+|++-.+......+.+.+.+.||+|..|.+..
T Consensus 97 -------~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 97 -------QADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred -------hCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecC
Confidence 46999887664446667789999999999998853
No 378
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=92.50 E-value=1.3 Score=36.47 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=59.3
Q ss_pred cCCCEEEEEc--ccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHc----CCCCceEEEeC----CchHHHHH
Q 029836 18 INAKNTMEIG--VFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKA----GVAHKIDFREG----PALPLLDQ 86 (187)
Q Consensus 18 ~~~~~vLeiG--~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~----~~~~~i~~~~~----d~~~~l~~ 86 (187)
.+..+|+-+| .+.|..+..+++.... ..+|+++|.+++.++.+++.+... |. ...++.. +..+.+..
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHHH
Confidence 3456888887 3467777777876531 247999999999998887753211 11 1122221 22222222
Q ss_pred HhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 87 LIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 87 ~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
+.. ...+|+|+.... ....+..+.+.++++|.++
T Consensus 252 ~t~----g~g~D~vid~~g---~~~~~~~a~~~l~~~G~~v 285 (410)
T cd08238 252 LTG----GQGFDDVFVFVP---VPELVEEADTLLAPDGCLN 285 (410)
T ss_pred HhC----CCCCCEEEEcCC---CHHHHHHHHHHhccCCeEE
Confidence 210 236898886432 2456777888999777554
No 379
>PLN02494 adenosylhomocysteinase
Probab=92.40 E-value=2.4 Score=35.60 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=55.2
Q ss_pred HHHHHHhh----cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHH
Q 029836 10 FFSMLLKL----INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (187)
Q Consensus 10 ~l~~l~~~----~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 84 (187)
++..+.+. ..+++++-+|+| .|......++.+ +.+|+.+|.++.....+.. .|. .+. +..+.+
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal 307 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV 307 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH
Confidence 34445544 356899999987 344444445554 4689999999865433322 122 221 232222
Q ss_pred HHHhhcccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 85 DQLIQDEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 85 ~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
...|+|+...... .-+.......||+|++|+-
T Consensus 308 ----------~~ADVVI~tTGt~--~vI~~e~L~~MK~GAiLiN 339 (477)
T PLN02494 308 ----------SEADIFVTTTGNK--DIIMVDHMRKMKNNAIVCN 339 (477)
T ss_pred ----------hhCCEEEECCCCc--cchHHHHHhcCCCCCEEEE
Confidence 2469888733211 1223567789999999985
No 380
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.39 E-value=2.8 Score=31.60 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=46.4
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCC-------------------chHHHHHHHHHHHcCCCCceEEEe
Q 029836 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDIT-------------------KEHYEKGLPIIQKAGVAHKIDFRE 77 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~-------------------~~~~~~a~~~~~~~~~~~~i~~~~ 77 (187)
.+..+|+-+||| .|...+..+...+ -++++.+|.+ ....+.+++.+++.+-.-+++.+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 356789999996 3433333333323 4788888643 344566777777765433555555
Q ss_pred CCch-HHHHHHhhcccCCCceeEEEEcCC
Q 029836 78 GPAL-PLLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 78 ~d~~-~~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
.... +.+..+ -..+|+|+...+
T Consensus 98 ~~i~~~~~~~~------~~~~DvVi~~~d 120 (228)
T cd00757 98 ERLDAENAEEL------IAGYDLVLDCTD 120 (228)
T ss_pred ceeCHHHHHHH------HhCCCEEEEcCC
Confidence 4432 222333 246899986654
No 381
>PRK07671 cystathionine beta-lyase; Provisional
Probab=92.39 E-value=3.4 Score=33.64 Aligned_cols=122 Identities=14% Similarity=0.177 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|....+-+.++.....+..+-+++|.+.....+. .+.++.+|+..+..-. ......+.++..|. ++.++..+..+
T Consensus 49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~ 125 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGI--EHTFVDTSNLE 125 (377)
T ss_pred ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-HhCCCCEEEECCCccchHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence 46667777777776666666678888776544432 3444677877665433 33333444455554 45555432223
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc-CCeEEEEeCcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTLW 133 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~~ 133 (187)
.+.... .....+|++..+ +......++.+.++.+ .|..+++|++..
T Consensus 126 ~l~~ai-----~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 126 EVEEAI-----RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred HHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 233322 334578887543 2112223344444444 356777777753
No 382
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.38 E-value=1.7 Score=31.33 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=50.0
Q ss_pred cCCCEEEEEcccccHHHHHH---HhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836 18 INAKNTMEIGVFTGYSLLAT---ALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l---~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
...++|.-+|+| .++..+ ++.+ +.+|++.|.+...... ... ..+ ...+..+.++
T Consensus 34 l~g~tvgIiG~G--~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~----~~~----~~~--~~~~l~ell~--------- 90 (178)
T PF02826_consen 34 LRGKTVGIIGYG--RIGRAVARRLKAF--GMRVIGYDRSPKPEEG----ADE----FGV--EYVSLDELLA--------- 90 (178)
T ss_dssp STTSEEEEESTS--HHHHHHHHHHHHT--T-EEEEEESSCHHHHH----HHH----TTE--EESSHHHHHH---------
T ss_pred cCCCEEEEEEEc--CCcCeEeeeeecC--CceeEEecccCChhhh----ccc----ccc--eeeehhhhcc---------
Confidence 356799999884 444444 4444 5799999999875541 221 122 2335555554
Q ss_pred CceeEEEEcCC--CcccHHHHHHHHhcccCCeEEE
Q 029836 95 GTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 95 ~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv 127 (187)
..|+|++..+ .+...-+=+.....||+|.+||
T Consensus 91 -~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 91 -QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp -H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE
T ss_pred -hhhhhhhhhccccccceeeeeeeeeccccceEEE
Confidence 3589998766 2222222245567889999887
No 383
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=92.31 E-value=2 Score=27.65 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=50.5
Q ss_pred EEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCe
Q 029836 47 ILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGG 124 (187)
Q Consensus 47 v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG 124 (187)
|..+|-++...+..++.++..+. ..+. ...+..+.+..+. ...+|+|++|.. .....++++.+...-....
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~-~~v~-~~~~~~~~~~~~~-----~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ 73 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGY-EEVT-TASSGEEALELLK-----KHPPDLIIIDLELPDGDGLELLEQIRQINPSIP 73 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTE-EEEE-EESSHHHHHHHHH-----HSTESEEEEESSSSSSBHHHHHHHHHHHTTTSE
T ss_pred cEEEECCHHHHHHHHHHHHhCCC-CEEE-EECCHHHHHHHhc-----ccCceEEEEEeeecccccccccccccccccccc
Confidence 45689999999999999996554 1222 4456656665553 457999999975 3455677777765553444
Q ss_pred EEEEe
Q 029836 125 VIGYD 129 (187)
Q Consensus 125 ~lv~~ 129 (187)
++++.
T Consensus 74 ii~~t 78 (112)
T PF00072_consen 74 IIVVT 78 (112)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 55543
No 384
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.28 E-value=2.6 Score=33.15 Aligned_cols=83 Identities=20% Similarity=0.186 Sum_probs=54.0
Q ss_pred CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcc-cCC
Q 029836 19 NAKNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDE-KYH 94 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~-~~~ 94 (187)
.++.||-.|.|.|. ++.++..+ ..+++++..|++.+......+.+++.| ++....+|..+ -+.+.++.. .+.
T Consensus 37 ~g~~vLITGgg~Gl-Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGL-GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchH-HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 45688999988876 33333322 225789999999999999888888875 56666666532 122222111 125
Q ss_pred CceeEEEEcCC
Q 029836 95 GTFDFVFVDAD 105 (187)
Q Consensus 95 ~~~D~v~~d~~ 105 (187)
+..|+++..+.
T Consensus 113 G~V~ILVNNAG 123 (300)
T KOG1201|consen 113 GDVDILVNNAG 123 (300)
T ss_pred CCceEEEeccc
Confidence 78899987754
No 385
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=92.21 E-value=1.8 Score=35.44 Aligned_cols=106 Identities=11% Similarity=-0.006 Sum_probs=68.3
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCc-eEEEeCCchHHHHHH
Q 029836 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK-IDFREGPALPLLDQL 87 (187)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~l~~~ 87 (187)
-+|+.+.......+|+-++=..|..+.+++..-+ +.+--+--.....++|++.++++.. +++.. +.+.+
T Consensus 34 ~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~--~~~~~--- 103 (378)
T PRK15001 34 YLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLD--STADY--- 103 (378)
T ss_pred HHHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeec--ccccc---
Confidence 3455554432223899999999999999985422 2222223334566788999888543 45542 22222
Q ss_pred hhcccCCCceeEEEEcCCCc--ccHHHHHHHHhcccCCeEEEEeC
Q 029836 88 IQDEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 88 ~~~~~~~~~~D~v~~d~~~~--~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
.+.+|+|++-.++. .....+..+.+.|++|+.+++-+
T Consensus 104 ------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 104 ------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred ------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 34689999987743 34556677888999999987643
No 386
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=92.12 E-value=3.7 Score=34.15 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-hHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|....+-..++.....+..+-.++|+......+...+.++.+|+..+..- .........++..|. ++.++..+..+
T Consensus 63 ~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv--~v~~vd~~d~e 140 (431)
T PRK08248 63 NPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI--TVKFVDPSDPE 140 (431)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCE--EEEEECCCCHH
Confidence 566677777777777778888888888777666654455456777665432 223334444555554 45555443233
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 133 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 133 (187)
.+.... .+...+|++... +......++.+.++.+. |..+++|++..
T Consensus 141 ~l~~ai-----~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a 189 (431)
T PRK08248 141 NFEAAI-----TDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFA 189 (431)
T ss_pred HHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence 333332 345678887633 21111223344444444 55677777753
No 387
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=92.08 E-value=0.57 Score=37.00 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=64.7
Q ss_pred CEEEEEcccccHHHHHHHhhC----C---------------CCCEEEEEeCCchH--HHHHHHHHHHc------------
Q 029836 21 KNTMEIGVFTGYSLLATALAI----P---------------DDGKILALDITKEH--YEKGLPIIQKA------------ 67 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~----~---------------~~~~v~~vd~~~~~--~~~a~~~~~~~------------ 67 (187)
.+||-||.|.|.-...++..+ . +...++.||+.+.. +......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999998777776655 0 11489999997643 23333333332
Q ss_pred CC--C--CceEEEeCCchHHHH-HHhhcccCCCceeEEEEc--------CCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 68 GV--A--HKIDFREGPALPLLD-QLIQDEKYHGTFDFVFVD--------ADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 68 ~~--~--~~i~~~~~d~~~~l~-~~~~~~~~~~~~D~v~~d--------~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.. + -+++|.+.|....-. .+..-- .....++|-+- ........|+..+-..+++|.+|++.|.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll-~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLL-GPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHh-ccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 00 1 246788888765322 110000 01234555211 1134456788888899999999988664
No 388
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=92.02 E-value=3.4 Score=33.27 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC--CchHHHHHHhhccc
Q 029836 16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG--PALPLLDQLIQDEK 92 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~l~~~~~~~~ 92 (187)
...+..+||-+|+| .|..+..+++..+ ..++++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~---- 254 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT---- 254 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh----
Confidence 34566789888864 2334455666653 2489999999887776643 443111111110 1112222221
Q ss_pred CCCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836 93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT 131 (187)
Q Consensus 93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 131 (187)
.+.+|+++--. .....+..+.+.+++| |.++.-..
T Consensus 255 -~~~~d~vid~~---G~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 255 -GGGVDYSFECT---GNIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred -CCCCCEEEECC---CChHHHHHHHHHhhcCCCEEEEECc
Confidence 33689777322 1234566677888996 88876544
No 389
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.97 E-value=3.3 Score=33.28 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=63.5
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC----CchHHHHHHhhcc
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG----PALPLLDQLIQDE 91 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~----d~~~~l~~~~~~~ 91 (187)
..+..++.-+||| .|..++.-+.... ..+++++|++++.++.|++ .|. .++++. |..+.+..+.
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~----fGA---T~~vn~~~~~~vv~~i~~~T--- 251 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKK----FGA---THFVNPKEVDDVVEAIVELT--- 251 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHh----cCC---ceeecchhhhhHHHHHHHhc---
Confidence 4456788888886 4556666565543 6899999999999988876 332 334433 2333334442
Q ss_pred cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCC
Q 029836 92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLW 133 (187)
Q Consensus 92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 133 (187)
++..|.+|--. .....++.....+.++|..++-.+..
T Consensus 252 --~gG~d~~~e~~---G~~~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 252 --DGGADYAFECV---GNVEVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred --CCCCCEEEEcc---CCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 34778886322 22346666666777788887755543
No 390
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.94 E-value=3 Score=34.62 Aligned_cols=95 Identities=15% Similarity=0.033 Sum_probs=58.0
Q ss_pred CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCCc
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHGT 96 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~ 96 (187)
.++++-+|+ |..+..+++.+.. +..++.+|.+++.++.+++.. ..+.++.||+.+. +.... -..
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~-----~~~ 297 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEG-----IDE 297 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcC-----Ccc
Confidence 578999887 6677777666642 578999999998877655532 3567788888543 33221 357
Q ss_pred eeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
+|.|++-.......-......+.+.+.-+++
T Consensus 298 a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 298 ADAFIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred CCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 8888875543322222333334455543443
No 391
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=91.92 E-value=4.3 Score=32.67 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=57.2
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC--chHHHHHHhhcccC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP--ALPLLDQLIQDEKY 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d--~~~~l~~~~~~~~~ 93 (187)
..+.++||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++ .|...-+.....+ ..+.+..+.
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~----- 251 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT----- 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh-----
Confidence 3456789888864 3334455666653 2379999998887776643 3431111111111 122222221
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCc
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT 131 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~ 131 (187)
.+.+|+|+--.. ....+...++.++++ |.++.-..
T Consensus 252 ~~g~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 252 GGGVDYSFECTG---NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCCEEEECCC---ChHHHHHHHHhcccCCCEEEEEcC
Confidence 346898884221 134567778889875 88876443
No 392
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=91.92 E-value=2.4 Score=33.58 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=56.7
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
..++.+||..|+| .|..+..+++..+ ...+++++.++...+.+++ .+...-+.....+..+.+..... .+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~----~~ 235 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTG----GR 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcC----CC
Confidence 3456788887764 3556677777753 2478888887766655443 33211111112222222222210 25
Q ss_pred ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
.+|+++-... ....+...++.|+++|.++.-
T Consensus 236 ~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 236 GVDCVIEAVG---FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCcEEEEccC---CHHHHHHHHHHhhcCCEEEEE
Confidence 6898874221 124677788899999988853
No 393
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.90 E-value=0.61 Score=37.06 Aligned_cols=68 Identities=13% Similarity=-0.055 Sum_probs=47.4
Q ss_pred EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEE
Q 029836 23 TMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFV 102 (187)
Q Consensus 23 vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~ 102 (187)
|+|+-||.|..+.-+..+. -.-+.++|+++.+.+..+.|+. . .+..+|..++...- ...+|+++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~------~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSD------IPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhh------CCCcCEEEe
Confidence 5899999999998887651 2346789999999888777763 2 34567776654321 235899987
Q ss_pred cCC
Q 029836 103 DAD 105 (187)
Q Consensus 103 d~~ 105 (187)
..+
T Consensus 66 g~P 68 (315)
T TIGR00675 66 GFP 68 (315)
T ss_pred cCC
Confidence 654
No 394
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=91.86 E-value=1.5 Score=34.59 Aligned_cols=88 Identities=17% Similarity=0.142 Sum_probs=50.0
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-C--CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 21 KNTMEIGVFTGYSLLATALAIPD-D--GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~-~--~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.+|.-||+|. .+..++..+.. + .+|+++|.+++..+.+++ .+... .. ..+.. .. -...
T Consensus 7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~~-~~~~~----~~------~~~a 67 (307)
T PRK07502 7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--RV-TTSAA----EA------VKGA 67 (307)
T ss_pred cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--ee-cCCHH----HH------hcCC
Confidence 5788888754 33333333221 2 389999999877655532 33211 11 11211 11 1346
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
|+|++-.+......+++.+.+.+++|.+++
T Consensus 68 DvViiavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 68 DLVILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 888887665555666777777788887654
No 395
>PTZ00357 methyltransferase; Provisional
Probab=91.83 E-value=1 Score=39.54 Aligned_cols=104 Identities=10% Similarity=0.036 Sum_probs=65.8
Q ss_pred EEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHH-cCC-------CCceEEEeCCchHHHHHHh-h
Q 029836 22 NTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQK-AGV-------AHKIDFREGPALPLLDQLI-Q 89 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~---~~~~~v~~vd~~~~~~~~a~~~~~~-~~~-------~~~i~~~~~d~~~~l~~~~-~ 89 (187)
.|+-+|+|-|-+....+++. ....+|++||-++..+...+.+... ... .++++++..|+.++-.... .
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999999776655443 2346899999997765554444322 122 2468999999987632110 0
Q ss_pred cc---cCCCceeEEEEc-----CCCcccHHHHHHHHhcccC----CeE
Q 029836 90 DE---KYHGTFDFVFVD-----ADKDNYVNYHKRLIELVKV----GGV 125 (187)
Q Consensus 90 ~~---~~~~~~D~v~~d-----~~~~~~~~~~~~~~~~L~~----gG~ 125 (187)
+. ...+++|+|+.- ++.+--++.++-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 00 002479999753 2245557777777788876 665
No 396
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.79 E-value=4.2 Score=32.26 Aligned_cols=92 Identities=16% Similarity=0.063 Sum_probs=56.2
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
..+..+||-.|+| .|..+..+++.. +.++++++.+++..+.+++ .|... ++. ..+. . .+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~-~--------~~ 222 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AGG--AYDT-P--------PE 222 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ecc--cccc-C--------cc
Confidence 3456799999864 344455667664 4689999999887665544 45421 111 1010 0 23
Q ss_pred ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.+|+++.... ....+....+.|++||.+++-..
T Consensus 223 ~~d~~i~~~~---~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 223 PLDAAILFAP---AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred cceEEEECCC---cHHHHHHHHHhhCCCcEEEEEec
Confidence 5787654221 13467788899999999987544
No 397
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.77 E-value=1.4 Score=34.77 Aligned_cols=96 Identities=9% Similarity=-0.016 Sum_probs=53.0
Q ss_pred CEEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEE-eCCchHH-HHHHhhcccCCCc
Q 029836 21 KNTMEIGVFT--GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFR-EGPALPL-LDQLIQDEKYHGT 96 (187)
Q Consensus 21 ~~vLeiG~g~--G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~-l~~~~~~~~~~~~ 96 (187)
.+|+-+|+|. |+++..|++. +..|+.++..++.++..++ +.|+ .+. .+....+ .+....+ ..+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~~~~~~~~~~~~--~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQ---AGGL----TLVEQGQASLYAIPAETAD--AAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhh---cCCe----EEeeCCcceeeccCCCCcc--cccc
Confidence 4688898862 3344444443 4679999887655543332 1122 111 0110000 0000000 0357
Q ss_pred eeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+|+|++-....+..+.++.+.+.+.++..++.
T Consensus 71 ~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 71 IHRLLLACKAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred cCEEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence 99999876555567788888999999987763
No 398
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=91.71 E-value=4.2 Score=33.28 Aligned_cols=122 Identities=11% Similarity=0.029 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeC-Cch
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREG-PAL 81 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~-d~~ 81 (187)
+|...++-+.++.....+..+-+++|+..+...+...+.++.+|+..+..-. ........++..+. ++.+... |..
T Consensus 60 ~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi--~~~~~d~~d~e 137 (388)
T PRK07811 60 NPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGV--EYTPVDLSDLD 137 (388)
T ss_pred CccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCe--EEEEeCCCCHH
Confidence 3556677777777776666777777765544444333454567777665433 22222222222232 2333322 232
Q ss_pred HHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 133 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 133 (187)
++...+ .+...+|++..+ +......++.+.++.++ |.++++|++..
T Consensus 138 ~l~~~i------~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 138 AVRAAI------TPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred HHHHhc------CcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 232222 335678887643 22223334444444443 56777787654
No 399
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.64 E-value=0.22 Score=35.71 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=55.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe------------------
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE------------------ 77 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~------------------ 77 (187)
..+|.+|+-+|.| .|..+..++..++ .+++..|..+...+.... .+. ..+.+..
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~----~~~-~~i~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLES----LGA-YFIEVDYEDHLERKDFDKADYYEHP 89 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHH----TTT-EESEETTTTTTTSB-CCHHHCHHHC
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhc----ccC-ceEEEcccccccccccchhhhhHHH
Confidence 3568899999988 4667777888874 899999998876655443 221 2233310
Q ss_pred CCchHHHHHHhhcccCCCceeEEEEcC--CCcccHHHH-HHHHhcccCCeEEEE
Q 029836 78 GPALPLLDQLIQDEKYHGTFDFVFVDA--DKDNYVNYH-KRLIELVKVGGVIGY 128 (187)
Q Consensus 78 ~d~~~~l~~~~~~~~~~~~~D~v~~d~--~~~~~~~~~-~~~~~~L~~gG~lv~ 128 (187)
......+.+. -..+|+|+... +....+.++ ++..+.|++|.+++=
T Consensus 90 ~~~~~~f~~~------i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvD 137 (168)
T PF01262_consen 90 ESYESNFAEF------IAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVD 137 (168)
T ss_dssp CHHHHHHHHH------HHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEE
T ss_pred HHhHHHHHHH------HhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEE
Confidence 1111122222 24689998653 233333333 556678898888763
No 400
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.50 E-value=0.89 Score=39.05 Aligned_cols=93 Identities=6% Similarity=-0.054 Sum_probs=56.5
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCCce
Q 029836 21 KNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHGTF 97 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~~ 97 (187)
.+++-+|+ |..+..+++.+.. +..++.+|.+++..+.+++ .....+.||+.+. +.+.. -++.
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~-----i~~a 482 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAH-----LDCA 482 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcC-----cccc
Confidence 45666655 7777777776642 4689999999988777654 2467888888653 33321 3578
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|.+++..........+-.+.+...+...++.
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence 8777653322222222233344566666664
No 401
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.39 E-value=4.8 Score=32.02 Aligned_cols=101 Identities=16% Similarity=0.125 Sum_probs=57.8
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
..++.+||-.|+| .|..+..+++.. +. ++++++.+++..+.+++ .|...-+.....+..+.+..... .
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~----~ 239 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTG----G 239 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhC----C
Confidence 3456788888753 333455566664 34 89999988887776643 34311111122222222222210 2
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836 95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
..+|+|+--.. ....++.+++.|+++|.++.-.
T Consensus 240 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 240 GGVDVSFDCAG---VQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCCEEEECCC---CHHHHHHHHHhccCCCEEEEEc
Confidence 35899985321 1345777888999999888643
No 402
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=91.31 E-value=6.8 Score=31.72 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|....+-..++.....+..+-.++|.......+ ..+.++.+|+..+..-. ........++..|. ++.++..+..+
T Consensus 51 ~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 127 (366)
T PRK08247 51 NPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV--RFVYVNTASLK 127 (366)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCc--eEEEECCCCHH
Confidence 4566677777777776666666777666555433 34444567777665333 33334444555554 44554432223
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTL 132 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~ 132 (187)
.+.... .+..++|++..+ +......++.+.++.++ |.++++|++.
T Consensus 128 ~l~~~i-----~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 128 AIEQAI-----TPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred HHHHhc-----ccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 333322 335678887543 32233455555555554 5677778876
No 403
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=91.29 E-value=3.8 Score=32.34 Aligned_cols=100 Identities=19% Similarity=0.260 Sum_probs=59.4
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836 16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
...+..+||..|+|. |..+..+++.. +.+++++..+++..+.+++ .+...-+.....+..+.+..... .
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~----~ 225 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTD----G 225 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhC----C
Confidence 344667999988763 66777788775 5789998888776665533 33211112222222222332211 2
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..+|+++-... -...+..+.+.|+++|.++.
T Consensus 226 ~~vd~vld~~g---~~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 226 EGADVVIDATG---NPASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCCEEEECCC---CHHHHHHHHHHHhcCCEEEE
Confidence 45899985421 13456777889999998875
No 404
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.19 E-value=2.8 Score=33.37 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=59.9
Q ss_pred hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836 16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 16 ~~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
...++.++.-+|.|. |....+-+++.+ .+++++||++++..+.|++.=...-..++ ++ .....+.+.+.- +
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~fGaTe~iNp~-d~-~~~i~evi~EmT-----d 260 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEFGATEFINPK-DL-KKPIQEVIIEMT-----D 260 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhcCcceecChh-hc-cccHHHHHHHHh-----c
Confidence 345667888888764 334444455433 68999999999999888762211111111 11 123445555553 5
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCC-eEEEEeCcC
Q 029836 95 GTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNTL 132 (187)
Q Consensus 95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~~ 132 (187)
+.+|.-|=-. ...+.+.++....++| |.-++-.+.
T Consensus 261 gGvDysfEc~---G~~~~m~~al~s~h~GwG~sv~iGv~ 296 (375)
T KOG0022|consen 261 GGVDYSFECI---GNVSTMRAALESCHKGWGKSVVIGVA 296 (375)
T ss_pred CCceEEEEec---CCHHHHHHHHHHhhcCCCeEEEEEec
Confidence 7888888221 1244455555555667 666554443
No 405
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.17 E-value=3.3 Score=34.30 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=55.4
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcc-----cCC
Q 029836 21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDE-----KYH 94 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~-----~~~ 94 (187)
++|--||.|. .+..++..+. .+.+|+++|.+++.++... . | .+.+...+..+.+....+.+ .+.
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~----~-g---~~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTIN----R-G---EIHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHH----C-C---CCCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 5677887764 3333333332 1478999999998776432 1 1 12222222222222111000 001
Q ss_pred CceeEEEEcCCC----------cccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836 95 GTFDFVFVDADK----------DNYVNYHKRLIELVKVGGVIGYDNTLWG 134 (187)
Q Consensus 95 ~~~D~v~~d~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
...|+||+.-+. .......+.+.+.+++|.++|...+...
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~p 123 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPV 123 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 246888876542 2344556777788999988887655443
No 406
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.16 E-value=4.6 Score=29.47 Aligned_cols=104 Identities=20% Similarity=0.237 Sum_probs=50.0
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhccc--------
Q 029836 22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEK-------- 92 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~-------- 92 (187)
+|--||. |+.++.+|..+. .+.+|+++|++++.++...+ |.. .+..-...+.+.+....++
T Consensus 2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~-----g~~---p~~E~~l~~ll~~~~~~~~l~~t~~~~ 71 (185)
T PF03721_consen 2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN-----GEL---PIYEPGLDELLKENVSAGRLRATTDIE 71 (185)
T ss_dssp EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT-----TSS---SS-CTTHHHHHHHHHHTTSEEEESEHH
T ss_pred EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh-----ccc---cccccchhhhhccccccccchhhhhhh
Confidence 4566665 444444443332 15799999999987765542 111 1111111112221110000
Q ss_pred C-CCceeEEEEcCC----------CcccHHHHHHHHhcccCCeEEEEeCcCCCc
Q 029836 93 Y-HGTFDFVFVDAD----------KDNYVNYHKRLIELVKVGGVIGYDNTLWGG 135 (187)
Q Consensus 93 ~-~~~~D~v~~d~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 135 (187)
. -...|++|+.-+ ........+.+.+.++++.++++....+.|
T Consensus 72 ~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG 125 (185)
T PF03721_consen 72 EAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPG 125 (185)
T ss_dssp HHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTT
T ss_pred hhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEe
Confidence 0 124688887643 112456777888899999999986665544
No 407
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.10 E-value=0.87 Score=39.53 Aligned_cols=93 Identities=11% Similarity=-0.058 Sum_probs=55.9
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCce
Q 029836 21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTF 97 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~ 97 (187)
.+|+-+|+ |..+..+++.+. .+..++.+|.+++.++.+++ . ...++.||+.+ .+.+.. -++.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~ag-----i~~A 465 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y----GYKVYYGDATQLELLRAAG-----AEKA 465 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHHHHHhcC-----CccC
Confidence 46666654 677777666553 24689999999998887654 2 35678888765 344331 3567
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|.+++-.+........-...+.+.|...+++
T Consensus 466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 466 EAIVITCNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 8887655432222222223345566666654
No 408
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=91.09 E-value=5.6 Score=32.46 Aligned_cols=122 Identities=11% Similarity=0.056 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-hHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|....+=..++.....+..+-+++|+......++ .+.++.+|+..+..- .........++..|. .++++..+..+
T Consensus 49 ~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi--~v~~vd~~d~e 125 (380)
T PRK06176 49 NPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQSGDHVLLGDDVYGGTFRLFDKVLVKNGL--SCTIIDTSDLS 125 (380)
T ss_pred ChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcCCCCEEEEcCCChhHHHHHHHHHHHhcCe--EEEEcCCCCHH
Confidence 46666777777777767777888888776654443 455567787766532 233334444555444 34444333223
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 133 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 133 (187)
.+.... .+...+|++..+ +.....-++.+.++.+. |..+++|++..
T Consensus 126 ~l~~ai-----~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a 174 (380)
T PRK06176 126 QIKKAI-----KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFA 174 (380)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 333322 345678886433 21122224444444444 55666777653
No 409
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=91.08 E-value=3.8 Score=32.97 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=57.4
Q ss_pred hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC---CchHHHHHHhhccc
Q 029836 17 LINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDEK 92 (187)
Q Consensus 17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~ 92 (187)
..+.++||-.|+|. |..+..++++.+ ...+++++.+++..+.+++ .+. . .++.. +..+.+....
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~-~--~~i~~~~~~~~~~v~~~~---- 251 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGA-T--HVINPKEEDLVAAIREIT---- 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCC-c--EEecCCCcCHHHHHHHHh----
Confidence 34567888887642 556666777764 3379999998877665543 333 1 22222 1222222221
Q ss_pred CCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+|+|+--... ...+..+++.|+++|.++.-
T Consensus 252 -~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 252 -GGGVDYALDTTGV---PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred -CCCCcEEEECCCC---cHHHHHHHHHhccCCEEEEe
Confidence 2468988743211 24567788899999988853
No 410
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.06 E-value=5.8 Score=33.03 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=53.5
Q ss_pred CCEEEEEc-ccccHHHHH--HHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEe----CCchHH----HHHH
Q 029836 20 AKNTMEIG-VFTGYSLLA--TALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE----GPALPL----LDQL 87 (187)
Q Consensus 20 ~~~vLeiG-~g~G~~~~~--l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~----~d~~~~----l~~~ 87 (187)
+..|+=+| .|.|-+|.. +|..+. .+.+|..++.++... .|.+.++..+-...+.++. .|+... +..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 34567777 577776554 343332 134666666655433 3333333322222344432 232221 2222
Q ss_pred hhcccCCCceeEEEEcCC--Cc---ccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 88 IQDEKYHGTFDFVFVDAD--KD---NYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 88 ~~~~~~~~~~D~v~~d~~--~~---~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
. ...||+|++|.. .. .....+..+.+..+|.-++++-|..
T Consensus 179 ~-----~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~ 223 (429)
T TIGR01425 179 K-----KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGS 223 (429)
T ss_pred H-----hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccc
Confidence 1 347999999976 21 2334444555567777666655543
No 411
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.00 E-value=0.89 Score=36.14 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=59.6
Q ss_pred CCCEEEEEcc-cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 19 NAKNTMEIGV-FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 19 ~~~~vLeiG~-g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
+.+++--+|. |.|..+..+++++ +.+|+++|.+...-+.+ ++..|-+.-+.+. .|. +....+.+.. +.-.
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea---~~~LGAd~fv~~~-~d~-d~~~~~~~~~--dg~~ 251 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEA---IKSLGADVFVDST-EDP-DIMKAIMKTT--DGGI 251 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHH---HHhcCcceeEEec-CCH-HHHHHHHHhh--cCcc
Confidence 4566655553 4788999999998 58999999998655544 5555553222222 222 3334432111 3333
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
|-|..- ....++.+..+||++|.+|+-.+.
T Consensus 252 ~~v~~~-----a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 252 DTVSNL-----AEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred eeeeec-----cccchHHHHHHhhcCCEEEEEeCc
Confidence 444311 234466777899999999986554
No 412
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.99 E-value=4 Score=33.72 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=52.9
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
...++|+-+|+|. |......++.+ +.+|+.+|.++.....+.. .|. ++. +..+.+ ..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~leeal----------~~ 250 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DGF----RVM--TMEEAA----------KI 250 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cCC----EeC--CHHHHH----------hc
Confidence 4678999999874 44445555554 4789999999865433332 222 221 222221 24
Q ss_pred eeEEEEcCCCcccHHHHH-HHHhcccCCeEEEEe
Q 029836 97 FDFVFVDADKDNYVNYHK-RLIELVKVGGVIGYD 129 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~ 129 (187)
.|+|+.-. .....+. .....+|+|++++..
T Consensus 251 aDVVItaT---G~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 251 GDIFITAT---GNKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred CCEEEECC---CCHHHHHHHHHhcCCCCcEEEEE
Confidence 58887633 2344454 367899999998853
No 413
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=90.93 E-value=3.5 Score=32.42 Aligned_cols=86 Identities=9% Similarity=0.029 Sum_probs=48.6
Q ss_pred EEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836 22 NTMEIGVFTGYSLLATALAI--PDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFREGPA 80 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~--~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~ 80 (187)
+||-+||| ..+.++++.+ ..-++++.+|.+. ...+.|.+++++.+-.-+++.+..+.
T Consensus 1 kVlVVGaG--GlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i 78 (291)
T cd01488 1 KILVIGAG--GLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKI 78 (291)
T ss_pred CEEEECCC--HHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 47888885 4444444333 2247888888532 23455666776665444566666666
Q ss_pred hHHHHHHhhcccCCCceeEEEEcCCCcccHHHHHH
Q 029836 81 LPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHKR 115 (187)
Q Consensus 81 ~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~~ 115 (187)
.+.-..+ -.+||+|+...+.-....++..
T Consensus 79 ~~~~~~f------~~~fdvVi~alDn~~aR~~in~ 107 (291)
T cd01488 79 QDKDEEF------YRQFNIIICGLDSIEARRWING 107 (291)
T ss_pred CchhHHH------hcCCCEEEECCCCHHHHHHHHH
Confidence 5443333 3579999875543333334443
No 414
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=90.86 E-value=2 Score=33.65 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=47.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCC
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHG 95 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~ 95 (187)
+.++||-.| |+|+++..+++.+- .+.+|+++..++.............+..++++++.+|..+. +..+ -.
T Consensus 3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~------~~ 75 (322)
T PLN02662 3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV------VD 75 (322)
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH------Hc
Confidence 356888888 57888888877663 24688888776543322222221112235788999987652 3333 23
Q ss_pred ceeEEEEcC
Q 029836 96 TFDFVFVDA 104 (187)
Q Consensus 96 ~~D~v~~d~ 104 (187)
.+|.||.-+
T Consensus 76 ~~d~Vih~A 84 (322)
T PLN02662 76 GCEGVFHTA 84 (322)
T ss_pred CCCEEEEeC
Confidence 578887654
No 415
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=90.85 E-value=5.9 Score=31.38 Aligned_cols=100 Identities=23% Similarity=0.263 Sum_probs=55.6
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
..+..++|-.|+| .|..+..+++..+ ..++++++.++.....+++ .|...-+.....+....+..+.. ..
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~----~~ 234 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTD----GR 234 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhC----CC
Confidence 3456777777653 2334445666653 2678889888876655543 34321122222232222222221 34
Q ss_pred ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+|+|+- .. .....++.+.+.|+++|.++.
T Consensus 235 ~~d~vld-~~--g~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 235 GVDVVIE-AV--GIPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCCEEEE-CC--CCHHHHHHHHHhccCCcEEEE
Confidence 6898873 32 223457788899999999875
No 416
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=90.81 E-value=6.5 Score=32.20 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=59.0
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC---CchHHHHHHhhccc
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDEK 92 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~ 92 (187)
..+.++||-.|+| .|..+..+++..+ ...++.+|.+++..+.+++ .|. . .+... +..+.+..+..
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga-~--~v~~~~~~~~~~~v~~~~~--- 251 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGC-E--TVDLSKDATLPEQIEQILG--- 251 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCC-e--EEecCCcccHHHHHHHHcC---
Confidence 3456788777764 3445555666653 2346677888777766654 344 2 22221 22222222210
Q ss_pred CCCceeEEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEEeCcC
Q 029836 93 YHGTFDFVFVDADKD-----------NYVNYHKRLIELVKVGGVIGYDNTL 132 (187)
Q Consensus 93 ~~~~~D~v~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~ 132 (187)
...+|+++--.... .....++.+.+++++||.+++-...
T Consensus 252 -~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 252 -EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred -CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 23689887432211 1134788888999999999885543
No 417
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.80 E-value=4.5 Score=28.77 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=45.2
Q ss_pred EEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCCceeE
Q 029836 23 TMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHGTFDF 99 (187)
Q Consensus 23 vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~~D~ 99 (187)
|+-+| ++|..+..+++.+ ..+.+|+++--+++.... ..+++++++|..+. +.... ...|.
T Consensus 1 I~V~G-atG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al------~~~d~ 63 (183)
T PF13460_consen 1 ILVFG-ATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAAL------KGADA 63 (183)
T ss_dssp EEEET-TTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHH------TTSSE
T ss_pred eEEEC-CCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhh------hhcch
Confidence 34455 6788888877665 235799999998875543 36899999998764 23322 36788
Q ss_pred EEEcCC
Q 029836 100 VFVDAD 105 (187)
Q Consensus 100 v~~d~~ 105 (187)
||.-..
T Consensus 64 vi~~~~ 69 (183)
T PF13460_consen 64 VIHAAG 69 (183)
T ss_dssp EEECCH
T ss_pred hhhhhh
Confidence 887653
No 418
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.78 E-value=5.2 Score=32.21 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=45.6
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc---------------------hHHHHHHHHHHHcCCCCceEE
Q 029836 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK---------------------EHYEKGLPIIQKAGVAHKIDF 75 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~---------------------~~~~~a~~~~~~~~~~~~i~~ 75 (187)
.+..+|+-+||| .|......+...+ -++++.+|.+. ...+.+++.+++.+-.-+++.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA 100 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 356789999997 3433333332222 47899999863 233455666666543334555
Q ss_pred EeCCchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836 76 REGPALP-LLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 76 ~~~d~~~-~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
+..+... .+..+ -..+|+|+.-.+
T Consensus 101 ~~~~~~~~~~~~~------~~~~DlVid~~D 125 (339)
T PRK07688 101 IVQDVTAEELEEL------VTGVDLIIDATD 125 (339)
T ss_pred EeccCCHHHHHHH------HcCCCEEEEcCC
Confidence 5544422 22333 246899886544
No 419
>PLN02256 arogenate dehydrogenase
Probab=90.62 E-value=3.8 Score=32.42 Aligned_cols=97 Identities=12% Similarity=-0.007 Sum_probs=54.9
Q ss_pred HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHH
Q 029836 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL 87 (187)
Q Consensus 9 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~ 87 (187)
.-++.-....+..+|.-||+| ..+..++..+.. +.+|+++|.++. .+.+ ...|. .. ..+..+.+
T Consensus 25 ~~~~~~~~~~~~~kI~IIG~G--~mG~slA~~L~~~G~~V~~~d~~~~-~~~a----~~~gv----~~-~~~~~e~~--- 89 (304)
T PLN02256 25 SRLQEELEKSRKLKIGIVGFG--NFGQFLAKTFVKQGHTVLATSRSDY-SDIA----AELGV----SF-FRDPDDFC--- 89 (304)
T ss_pred hHHhHhhccCCCCEEEEEeeC--HHHHHHHHHHHhCCCEEEEEECccH-HHHH----HHcCC----ee-eCCHHHHh---
Confidence 344555555567789999874 444455444321 358999998863 2222 22332 22 12222221
Q ss_pred hhcccCCCceeEEEEcCCCcccHHHHHHH-HhcccCCeEE
Q 029836 88 IQDEKYHGTFDFVFVDADKDNYVNYHKRL-IELVKVGGVI 126 (187)
Q Consensus 88 ~~~~~~~~~~D~v~~d~~~~~~~~~~~~~-~~~L~~gG~l 126 (187)
....|+|++-.+.......++.+ ...++++.++
T Consensus 90 ------~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iv 123 (304)
T PLN02256 90 ------EEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLF 123 (304)
T ss_pred ------hCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEE
Confidence 12468999876666667777776 5667777644
No 420
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=90.57 E-value=8.7 Score=31.69 Aligned_cols=124 Identities=19% Similarity=0.125 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEe-CCchHHHHHHHHHHHcCCCCceEEEeCCchHH
Q 029836 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALD-ITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (187)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd-~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 83 (187)
|....+=..+..+.....++-.-+|...+...+...++.+.++++.+ +--.-....++..++.|. ...++..+-.+-
T Consensus 77 Pt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gi--e~~~vd~~~~~~ 154 (409)
T KOG0053|consen 77 PTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGG--EGDFVDVDDLKK 154 (409)
T ss_pred CchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCc--eeeeechhhHHH
Confidence 34444555666677788899999988877777777777677887776 344456677777776665 455665544433
Q ss_pred HHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcc-cCCeEEEEeCcCCCc
Q 029836 84 LDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELV-KVGGVIGYDNTLWGG 135 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L-~~gG~lv~~~~~~~~ 135 (187)
+.... .+.-++||+-.+ +.-....++.+.++- ++|-.+|+||++-..
T Consensus 155 ~~~~i-----~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p 204 (409)
T KOG0053|consen 155 ILKAI-----KENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP 204 (409)
T ss_pred HHHhh-----ccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc
Confidence 33321 445899998765 211112233333333 566677777776543
No 421
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=90.54 E-value=8.6 Score=31.56 Aligned_cols=124 Identities=19% Similarity=0.138 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeC-Cch
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREG-PAL 81 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~-d~~ 81 (187)
+|....+-..++.......++-..+|+..+...+...+.++.+|+..+..-. ............+. ++.++.. |..
T Consensus 52 npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~e 129 (388)
T PRK08861 52 NPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF--KVQFVDQSDAA 129 (388)
T ss_pred CchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence 5677788888888888889988888777766665544554566776555433 23333333333232 3333332 232
Q ss_pred HHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc-CCeEEEEeCcCCCc
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTLWGG 135 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~~~~ 135 (187)
++...+ .+.-++|++..+ +.....-++.+.++.+ .|.++++|++...+
T Consensus 130 ~l~~~i------~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~ 180 (388)
T PRK08861 130 ALDAAL------AKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTP 180 (388)
T ss_pred HHHHhc------CcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccc
Confidence 232222 335688887543 2211111233333333 36677888886543
No 422
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=90.53 E-value=7 Score=32.03 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|...++-+.++.....+..+-+++|+......+...+.++.+|+..+.... .....+..+...|. ++.++..+..+
T Consensus 58 ~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~~~~vd~~d~e 135 (391)
T TIGR01328 58 NPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGI--QVDFINMAIPE 135 (391)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence 4666677777777777777777777766554444443454567776554322 23333344444443 34454443223
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 133 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 133 (187)
.+.... ...-.+|++..+ +......++.+.++.+. |..+++|++..
T Consensus 136 ~l~~~i-----~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 136 EVKAHI-----KDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred HHHHhh-----ccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence 233221 234578887543 22111223444444443 55677777754
No 423
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.51 E-value=3.4 Score=28.18 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=47.2
Q ss_pred CCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEeCC
Q 029836 20 AKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFREGP 79 (187)
Q Consensus 20 ~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d 79 (187)
..+|+-+||| .|......+...+ -++++.+|.+. ...+.+++.+.+....-+++.+..+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 4689999995 4444333332223 47899998532 3356677777776544566666666
Q ss_pred c-hHHHHHHhhcccCCCceeEEEEcCC
Q 029836 80 A-LPLLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 80 ~-~~~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
. .+....+ -..+|+|+.-.+
T Consensus 81 ~~~~~~~~~------~~~~d~vi~~~d 101 (135)
T PF00899_consen 81 IDEENIEEL------LKDYDIVIDCVD 101 (135)
T ss_dssp CSHHHHHHH------HHTSSEEEEESS
T ss_pred ccccccccc------ccCCCEEEEecC
Confidence 6 2334444 246899986554
No 424
>PRK07582 cystathionine gamma-lyase; Validated
Probab=90.46 E-value=6 Score=32.05 Aligned_cols=118 Identities=11% Similarity=0.026 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchH-HHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEH-YEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~-~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
.|...++-+.++... +...+-+++|+..+...+...+.++.+|+..+..... ...++..++..|. ++.++..+..
T Consensus 50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v~~~~~- 125 (366)
T PRK07582 50 NPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREAPTAGM- 125 (366)
T ss_pred CccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEECCCCh-
Confidence 456677777777776 6677778888876655554445556678887765533 3344444555554 4444443321
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc-CCeEEEEeCcC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTL 132 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~ 132 (187)
.... ....++|++..+ +......++.+.++.+ .|.++++|++.
T Consensus 126 -~~~~------~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 126 -AEAA------LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred -HHHh------ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 1111 235678887644 2211223444444444 46678888875
No 425
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.20 E-value=0.43 Score=33.22 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=52.1
Q ss_pred EEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCC---------chHHHHHHhhccc
Q 029836 23 TMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP---------ALPLLDQLIQDEK 92 (187)
Q Consensus 23 vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d---------~~~~l~~~~~~~~ 92 (187)
|+-+|+ |..+..++..+. .+.+|+.+...+ .++. ++..++ ++...+ ........
T Consensus 1 I~I~G~--GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~----- 64 (151)
T PF02558_consen 1 ILIIGA--GAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGL----TITGPDGDETVQPPIVISAPSAD----- 64 (151)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCE----EEEETTEEEEEEEEEEESSHGHH-----
T ss_pred CEEECc--CHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeE----EEEecccceecccccccCcchhc-----
Confidence 345555 555555554441 257899998877 4433 333332 111111 00000011
Q ss_pred CCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 93 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 93 ~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+.+|+||+-....+....++.+.+.+.++..+++
T Consensus 65 -~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 65 -AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp -HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred -cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence 46899999987666778899999999999977764
No 426
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=90.19 E-value=8 Score=30.65 Aligned_cols=99 Identities=18% Similarity=0.099 Sum_probs=53.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCC
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIP--DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHG 95 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~--~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 95 (187)
...++|+-+|+ |..+..++..+. ...+|+.++.+++......+ +.+. ... +..+ +... -.
T Consensus 176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~---~~g~----~~~--~~~~-~~~~------l~ 237 (311)
T cd05213 176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAK---ELGG----NAV--PLDE-LLEL------LN 237 (311)
T ss_pred ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH---HcCC----eEE--eHHH-HHHH------Hh
Confidence 36789999988 555554444332 23679999998765433222 2232 121 1212 2222 13
Q ss_pred ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836 96 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWG 134 (187)
Q Consensus 96 ~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
..|+||.-.....+...+....+..+.++.+++|=..+.
T Consensus 238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence 579999876544443444444433334677887765543
No 427
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=90.16 E-value=5.3 Score=31.46 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=57.9
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc-hHHHHHHhhcccC
Q 029836 16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA-LPLLDQLIQDEKY 93 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~ 93 (187)
...++.+||-.|+| .|..+..+++... +.++++++.+++..+.+++ .|. +. ++.... .++...+...
T Consensus 159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~-~~--v~~~~~~~~~~~~v~~~--- 227 (338)
T PRK09422 159 GIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGA-DL--TINSKRVEDVAKIIQEK--- 227 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCC-cE--EecccccccHHHHHHHh---
Confidence 34456788888853 3445555666532 4689999999887776643 343 22 122111 1111222111
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
.+.+|.++++.. ....++.+++.|+++|.++.
T Consensus 228 ~~~~d~vi~~~~---~~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 228 TGGAHAAVVTAV---AKAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred cCCCcEEEEeCC---CHHHHHHHHHhccCCCEEEE
Confidence 235787776643 24567888899999998875
No 428
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=90.11 E-value=6 Score=30.07 Aligned_cols=85 Identities=12% Similarity=0.052 Sum_probs=45.7
Q ss_pred EEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEeCCc
Q 029836 22 NTMEIGVFTGYSLLATALAI--PDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFREGPA 80 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~--~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~ 80 (187)
+||-+|+| ..+.++++.+ ..-++++.+|.+. ...+.+.+++++.+-.-+++.+..+.
T Consensus 1 kVlvvG~G--GlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i 78 (234)
T cd01484 1 KVLLVGAG--GIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV 78 (234)
T ss_pred CEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 47778874 4444444433 1247888888643 23455566666655434555566555
Q ss_pred h---HHHHHHhhcccCCCceeEEEEcCCCcccHHHHH
Q 029836 81 L---PLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHK 114 (187)
Q Consensus 81 ~---~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~ 114 (187)
. ++...+ -.+||+|+...+......++.
T Consensus 79 ~~~~~~~~~f------~~~~DvVi~a~Dn~~aR~~ln 109 (234)
T cd01484 79 GPEQDFNDTF------FEQFHIIVNALDNIIARRYVN 109 (234)
T ss_pred ChhhhchHHH------HhCCCEEEECCCCHHHHHHHH
Confidence 2 222223 357999997654333333343
No 429
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.07 E-value=5.5 Score=30.94 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=52.7
Q ss_pred CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHH-------HcCCC---------CceEEEeCCchHH
Q 029836 21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQ-------KAGVA---------HKIDFREGPALPL 83 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~-------~~~~~---------~~i~~~~~d~~~~ 83 (187)
++|--||+| ..+..++..+. .+.+|+.+|++++.++.+++.++ +.+.. .++++. .|.
T Consensus 4 ~kI~VIG~G--~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~--- 77 (282)
T PRK05808 4 QKIGVIGAG--TMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDL--- 77 (282)
T ss_pred cEEEEEccC--HHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH---
Confidence 357778875 33333332221 14689999999998876553332 22211 122221 221
Q ss_pred HHHHhhcccCCCceeEEEEcCCCcc--cHHHHHHHHhcccCCeEEE
Q 029836 84 LDQLIQDEKYHGTFDFVFVDADKDN--YVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~~~~--~~~~~~~~~~~L~~gG~lv 127 (187)
..+ ...|+|+.-..... ....++.+.+.++++.+++
T Consensus 78 -~~~-------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 78 -DDL-------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred -HHh-------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 111 34699998654322 2578888888899888774
No 430
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=90.02 E-value=2.7 Score=32.69 Aligned_cols=85 Identities=12% Similarity=0.119 Sum_probs=48.4
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836 22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV 100 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v 100 (187)
+|.-||+| ..+..++..+. .+.+|+++|.+++..+.+.+ .+. +.....+. +. -...|+|
T Consensus 2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~-~~----------~~~aDlV 61 (279)
T PRK07417 2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIE----RGL---VDEASTDL-SL----------LKDCDLV 61 (279)
T ss_pred eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CCC---cccccCCH-hH----------hcCCCEE
Confidence 46667764 44444443332 14689999999877766543 222 11111111 11 1346899
Q ss_pred EEcCCCcccHHHHHHHHhcccCCeEE
Q 029836 101 FVDADKDNYVNYHKRLIELVKVGGVI 126 (187)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~L~~gG~l 126 (187)
++-.+.......++.+.+.++++.++
T Consensus 62 ilavp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 62 ILALPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence 88776555666777777777776544
No 431
>PRK06460 hypothetical protein; Provisional
Probab=89.97 E-value=9.3 Score=31.10 Aligned_cols=123 Identities=16% Similarity=0.149 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-chHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDIT-KEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|...++-+.++.....+..+-+++|...+...+...+.++.+|+..+.. ..........++..|. ++.+...+...
T Consensus 44 ~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~--~v~~~~~~~~~ 121 (376)
T PRK06460 44 NPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGV--NVDASNPGSDN 121 (376)
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCc--EEEEECCCCHH
Confidence 45566666677776665555666666654444333334445666654321 1233333444555554 35554433333
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 133 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 133 (187)
.++.+. .....+|++..+ +.....-++.+.++.+. |.++++|++..
T Consensus 122 ~l~~~~-----~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~ 170 (376)
T PRK06460 122 IIEKAK-----SKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFS 170 (376)
T ss_pred HHHHhc-----CCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcC
Confidence 444332 234578887654 22222222344444444 56777787653
No 432
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.85 E-value=7.1 Score=29.63 Aligned_cols=82 Identities=18% Similarity=0.138 Sum_probs=45.0
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEe
Q 029836 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFRE 77 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~ 77 (187)
.+..+|+-+||| .|......+...+ -++++.+|.+. ...+.+++++.+.+-.-+++.+.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 356789999996 4554444433322 47899999653 23345566666654333444444
Q ss_pred CCch-HHHHHHhhcccCCCceeEEEEcCC
Q 029836 78 GPAL-PLLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 78 ~d~~-~~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
.... +....+. ...||+|+.-.+
T Consensus 88 ~~i~~~~~~~l~-----~~~~D~VvdaiD 111 (231)
T cd00755 88 EFLTPDNSEDLL-----GGDPDFVVDAID 111 (231)
T ss_pred eecCHhHHHHHh-----cCCCCEEEEcCC
Confidence 3332 1223332 346999886543
No 433
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.82 E-value=2.4 Score=33.09 Aligned_cols=34 Identities=26% Similarity=0.203 Sum_probs=27.2
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..+|+||+-.........++.+.+.++++.+++.
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 5789999887666778888888888888887663
No 434
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.80 E-value=5.5 Score=32.48 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=46.1
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCC-------------------chHHHHHHHHHHHcCCCCceEEEe
Q 029836 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDIT-------------------KEHYEKGLPIIQKAGVAHKIDFRE 77 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~-------------------~~~~~~a~~~~~~~~~~~~i~~~~ 77 (187)
.+..+|+-+||| .|......+...+ -++++.+|.+ ....+.+.+.+++.+-.-+++...
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 356789999997 3444444333333 4789999987 345566667776654322344444
Q ss_pred CCchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836 78 GPALP-LLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 78 ~d~~~-~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
....+ .+..+ -..+|+|+...+
T Consensus 212 ~~~~~~~~~~~------~~~~D~Vv~~~d 234 (376)
T PRK08762 212 ERVTSDNVEAL------LQDVDVVVDGAD 234 (376)
T ss_pred ccCChHHHHHH------HhCCCEEEECCC
Confidence 33321 22222 246898886544
No 435
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.77 E-value=11 Score=31.48 Aligned_cols=86 Identities=9% Similarity=0.041 Sum_probs=51.3
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 19 NAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 19 ~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
..++++-+|+|. |......++.+ +.+|+.+|.++.....+.. .|. ++ .+..+.+ ...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~----~G~----~v--~~l~eal----------~~a 268 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAM----DGF----RV--MTMEEAA----------ELG 268 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHh----cCC----Ee--cCHHHHH----------hCC
Confidence 678999999863 33333344444 4689999999876543322 122 22 1222221 357
Q ss_pred eEEEEcCCCcccHHHHH-HHHhcccCCeEEEEe
Q 029836 98 DFVFVDADKDNYVNYHK-RLIELVKVGGVIGYD 129 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~ 129 (187)
|+|+... .....+. .....+|+|++++..
T Consensus 269 DVVI~aT---G~~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 269 DIFVTAT---GNKDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred CEEEECC---CCHHHHHHHHHhcCCCCCEEEEc
Confidence 9887643 2234554 567889999988753
No 436
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=89.70 E-value=9.4 Score=31.19 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchH-HHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEH-YEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~-~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|...++-+.++....+..++-..+|+..+...+...+.++.+|+..+..-.. ...........+. ++.+...+..+
T Consensus 50 ~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~--~v~~~d~~d~~ 127 (382)
T TIGR02080 50 NPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCF--RVLFVDQGDEQ 127 (382)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCe--EEEEECCCCHH
Confidence 45566677777777667778766666665555444444545677766665442 3333332222222 34444332223
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc-CCeEEEEeCcCCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTLWG 134 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~~~ 134 (187)
.+.... .....+|++..+ +.....-++.+.++.+ .|.++++|++...
T Consensus 128 ~l~~ai-----~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 128 ALRAAL-----AQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLS 177 (382)
T ss_pred HHHHhc-----CcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 233322 334578887543 2222122334444444 3667788887643
No 437
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=89.69 E-value=7 Score=31.42 Aligned_cols=101 Identities=22% Similarity=0.359 Sum_probs=56.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC--CchHHHHHHhhcccC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG--PALPLLDQLIQDEKY 93 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~l~~~~~~~~~ 93 (187)
..++.+||-+|+| .|..+..+++..+ ...+++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~----- 250 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT----- 250 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh-----
Confidence 3456788888763 3334455666653 2358888888877666533 343211221122 1112222221
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhccc-CCeEEEEeC
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVK-VGGVIGYDN 130 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~-~gG~lv~~~ 130 (187)
.+.+|+|+--. .....+...++.|+ ++|.++.-.
T Consensus 251 ~~~~d~vid~~---g~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 251 DGGVDYAFEVI---GSADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CCCCcEEEECC---CCHHHHHHHHHHhccCCCEEEEEe
Confidence 34689888422 12356677788899 999988643
No 438
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=89.66 E-value=1.1 Score=34.54 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=45.2
Q ss_pred HHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEEEEcCCCcccHHHHH
Q 029836 35 LATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKDNYVNYHK 114 (187)
Q Consensus 35 ~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~d~~~~~~~~~~~ 114 (187)
..+.+.. ...+|+++|.++..++.|++ .|.... ...+ . ..+ ...|+|++..+......+++
T Consensus 3 ~aL~~~g-~~~~v~g~d~~~~~~~~a~~----~g~~~~---~~~~-~---~~~-------~~~DlvvlavP~~~~~~~l~ 63 (258)
T PF02153_consen 3 LALRKAG-PDVEVYGYDRDPETLEAALE----LGIIDE---ASTD-I---EAV-------EDADLVVLAVPVSAIEDVLE 63 (258)
T ss_dssp HHHHHTT-TTSEEEEE-SSHHHHHHHHH----TTSSSE---EESH-H---HHG-------GCCSEEEE-S-HHHHHHHHH
T ss_pred HHHHhCC-CCeEEEEEeCCHHHHHHHHH----CCCeee---ccCC-H---hHh-------cCCCEEEEcCCHHHHHHHHH
Confidence 4444443 36899999999998776643 343221 1111 1 222 35699999887777888888
Q ss_pred HHHhcccCCeEEE
Q 029836 115 RLIELVKVGGVIG 127 (187)
Q Consensus 115 ~~~~~L~~gG~lv 127 (187)
.+.+.+++|+++.
T Consensus 64 ~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 64 EIAPYLKPGAIVT 76 (258)
T ss_dssp HHHCGS-TTSEEE
T ss_pred HhhhhcCCCcEEE
Confidence 8888888887765
No 439
>PRK08324 short chain dehydrogenase; Validated
Probab=89.61 E-value=8 Score=34.20 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=47.7
Q ss_pred CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCCC
Q 029836 20 AKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYHG 95 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~~ 95 (187)
.+++|-+|+ +|.++..+++.+. .+.+|+.++.++...+.+.+.+... .++.++.+|..+. +....+.. ...+
T Consensus 422 gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 422 GKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 468888884 4455555554432 2578999999987776655544332 4677777775431 22211110 0135
Q ss_pred ceeEEEEcCC
Q 029836 96 TFDFVFVDAD 105 (187)
Q Consensus 96 ~~D~v~~d~~ 105 (187)
.+|+||....
T Consensus 498 ~iDvvI~~AG 507 (681)
T PRK08324 498 GVDIVVSNAG 507 (681)
T ss_pred CCCEEEECCC
Confidence 7899987653
No 440
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=89.57 E-value=3.1 Score=32.55 Aligned_cols=89 Identities=20% Similarity=0.186 Sum_probs=48.2
Q ss_pred CEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 21 KNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~---~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.+|+-+|. |..+.+++..+.. ...+++.|.+....+.+.+ .|..+. ..+. ..... ....
T Consensus 4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d~----~~~~--~~~~~------~~~a 65 (279)
T COG0287 4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVIDE----LTVA--GLAEA------AAEA 65 (279)
T ss_pred cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCcccc----cccc--hhhhh------cccC
Confidence 46677765 5555555544432 2456777777655544432 122110 0011 10111 2356
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
|+|++.-+......+++++.+.|++|..+.
T Consensus 66 D~VivavPi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 66 DLVIVAVPIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred CEEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence 888887776667777777777777776664
No 441
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.47 E-value=4.7 Score=31.98 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=56.6
Q ss_pred hcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc---hHHHHHHhhcc
Q 029836 17 LINAKNTMEIGVFT-GYSLLATALAIPDDGK-ILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA---LPLLDQLIQDE 91 (187)
Q Consensus 17 ~~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~-v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~l~~~~~~~ 91 (187)
..++.++|-.|+|. |..+..+++..+ .+ +++++.+++..+.+++ .+...-+.....+. .+.+.....
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~~-- 231 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELLG-- 231 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHhC--
Confidence 44567888777654 556677777753 44 8888888776665543 23311111111121 111222210
Q ss_pred cCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 92 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 92 ~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+|+|+-... -...+...++.|+++|.++.-
T Consensus 232 --~~~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 232 --GKGPDVVIECTG---AESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred --CCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence 245898885322 123567778899999988753
No 442
>PRK05599 hypothetical protein; Provisional
Probab=89.35 E-value=4.7 Score=30.45 Aligned_cols=78 Identities=12% Similarity=0.033 Sum_probs=49.8
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH------HHHHhhcccCCC
Q 029836 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL------LDQLIQDEKYHG 95 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~~~~~ 95 (187)
++|-.|++. .++..+++.+..+.+|+.++.+++.++.+.+.++..+. .++.++..|..+. ...+.+. .+
T Consensus 2 ~vlItGas~-GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~---~g 76 (246)
T PRK05599 2 SILILGGTS-DIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQEL---AG 76 (246)
T ss_pred eEEEEeCcc-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHh---cC
Confidence 577777654 45666666665568899999888877777666765542 3467777775432 2222211 36
Q ss_pred ceeEEEEcC
Q 029836 96 TFDFVFVDA 104 (187)
Q Consensus 96 ~~D~v~~d~ 104 (187)
..|+++...
T Consensus 77 ~id~lv~na 85 (246)
T PRK05599 77 EISLAVVAF 85 (246)
T ss_pred CCCEEEEec
Confidence 789998654
No 443
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.34 E-value=6.5 Score=31.01 Aligned_cols=95 Identities=21% Similarity=0.265 Sum_probs=56.1
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 19 NAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 19 ~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
+..+||..|+|. |..+..+++..+ ..++++++.+++..+.+++ .+. + .++..+... +...... .+.+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~-~--~vi~~~~~~-~~~~~~~---~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGA-D--ETVNLARDP-LAAYAAD---KGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCC-C--EEEcCCchh-hhhhhcc---CCCc
Confidence 567888888764 556667777753 2378999988877665443 332 1 222222111 2222111 2458
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+++--.. -...++..++.|+++|.++.
T Consensus 233 d~vld~~g---~~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 233 DVVFEASG---APAALASALRVVRPGGTVVQ 260 (339)
T ss_pred cEEEECCC---CHHHHHHHHHHHhcCCEEEE
Confidence 99885322 13456778899999999885
No 444
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.31 E-value=4.9 Score=33.32 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=55.8
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCcee
Q 029836 22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTFD 98 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~D 98 (187)
+|+-+|+ |..+..+++.+. .+..++.+|.+++.++.+++. ..++++.+|+.+ .+.... -+.+|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~~-----~~~a~ 67 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREAG-----AEDAD 67 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHcC-----CCcCC
Confidence 5777776 888888887664 246899999999877655431 246777888754 233221 35788
Q ss_pred EEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 99 FVFVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
.|++..........+....+.+.+.-.++
T Consensus 68 ~vi~~~~~~~~n~~~~~~~r~~~~~~~ii 96 (453)
T PRK09496 68 LLIAVTDSDETNMVACQIAKSLFGAPTTI 96 (453)
T ss_pred EEEEecCChHHHHHHHHHHHHhcCCCeEE
Confidence 88876543333333434444553333333
No 445
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.28 E-value=0.72 Score=37.67 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=46.4
Q ss_pred CceEEEeCCchHHHHHHhhcccCCCceeEEEE-cCC----CcccHHHHHHHHhcccCCeEEEEeCcCCC
Q 029836 71 HKIDFREGPALPLLDQLIQDEKYHGTFDFVFV-DAD----KDNYVNYHKRLIELVKVGGVIGYDNTLWG 134 (187)
Q Consensus 71 ~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v~~-d~~----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 134 (187)
+++++++++..+++.+.. .+++|.+++ |.. .+...+.++.+.+.++|||.+++-++...
T Consensus 275 drv~i~t~si~~~L~~~~-----~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLP-----PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCC-----CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 799999999999988763 578998864 432 45567788888999999999998665543
No 446
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.21 E-value=1.4 Score=38.39 Aligned_cols=92 Identities=15% Similarity=0.012 Sum_probs=53.8
Q ss_pred CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchH--HHHHHhhcccCCCce
Q 029836 21 KNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDEKYHGTF 97 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~~ 97 (187)
.+|+-+|+ |..+..+++.+.. +..++.+|.+++.++.+++ ....++.||+.+ .+.+.. -++.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~ag-----i~~A 465 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAG-----AAKA 465 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcC-----CCcC
Confidence 57888776 5555555554432 4689999999998887765 235678888765 344321 3577
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
|.+++-.+..+.....-...+.+.|.-.++
T Consensus 466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~ii 495 (621)
T PRK03562 466 EVLINAIDDPQTSLQLVELVKEHFPHLQII 495 (621)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCCeEE
Confidence 888765542222222222233445554444
No 447
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=89.16 E-value=6.6 Score=28.21 Aligned_cols=66 Identities=20% Similarity=0.083 Sum_probs=34.4
Q ss_pred ceeEEEEcCC--------Cc-------ccHHHHHHHHhcccCCe--EEEE-eCcCCCccccCCCCCCchhhhhhHHHHHH
Q 029836 96 TFDFVFVDAD--------KD-------NYVNYHKRLIELVKVGG--VIGY-DNTLWGGSVVAPPDADLDEHFLYLRDFVQ 157 (187)
Q Consensus 96 ~~D~v~~d~~--------~~-------~~~~~~~~~~~~L~~gG--~lv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (187)
+.|+|++|+- .. .....+..+...|+..+ ++++ +++.++... +....+...+..-
T Consensus 73 ~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnEvG~g~vp-------~~~~~r~f~d~lG 145 (169)
T cd00544 73 PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNEVGLGVVP-------ENALGRRFRDELG 145 (169)
T ss_pred CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECCcCCCCCC-------CCHHHHHHHHHHH
Confidence 5789999963 11 11233333445544333 3333 444444322 2233456667777
Q ss_pred HHHHHHhcCCC
Q 029836 158 ELNKALAVDPR 168 (187)
Q Consensus 158 ~~~~~~~~~~~ 168 (187)
.+++.+....+
T Consensus 146 ~lnq~la~~ad 156 (169)
T cd00544 146 RLNQRLAALAD 156 (169)
T ss_pred HHHHHHHHHCC
Confidence 77888876655
No 448
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=89.11 E-value=11 Score=31.08 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHH-HHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHY-EKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~-~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|...++=+.++.....+..+-+++|...+...+...+.++.+|++.+..-... ...+..++..|. ++.++.....+
T Consensus 63 ~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi--~v~~vd~~d~e 140 (398)
T PRK08249 63 NPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGV--DVTLCETGDHE 140 (398)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCe--EEEEcCCCCHH
Confidence 466667777777777777888888776655555433444456777766544332 222333444444 34433322222
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhccc-CCeEEEEeCcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTLW 133 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~~ 133 (187)
.+.... .+.-.+|++..+ +......++.+.++.+ .|.++++|++..
T Consensus 141 ~l~~~i-----~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a 189 (398)
T PRK08249 141 QIEAEI-----AKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFA 189 (398)
T ss_pred HHHHhc-----CCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcC
Confidence 233322 234578887543 2111112333444443 456777777754
No 449
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=88.92 E-value=11 Score=30.50 Aligned_cols=123 Identities=16% Similarity=0.157 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchH-HHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEH-YEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~-~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|...++-+.++........+-+++|+......+...+.++.+|++.+..-.. ....+...+..|. ++.++..+..+
T Consensus 39 ~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~--~~~~v~~~d~~ 116 (369)
T cd00614 39 NPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGI--EVTFVDPDDPE 116 (369)
T ss_pred ChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCe--EEEEeCCCCHH
Confidence 45666777777777766777777777665555544444445566665433322 2333333444443 45555444333
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 133 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 133 (187)
.+.... .....+|++... +.....-++.+.++.++ |..+++|++.-
T Consensus 117 ~l~~~i-----~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~ 165 (369)
T cd00614 117 ALEAAI-----KPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFA 165 (369)
T ss_pred HHHHhc-----CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence 333332 234578887643 22222224445444454 56777777643
No 450
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=88.89 E-value=12 Score=30.72 Aligned_cols=122 Identities=13% Similarity=0.124 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-hHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|...++=+.++.....+.++-..+|+......+...+.++.+|+..+... .........+...|. ++.++..+..+
T Consensus 60 ~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 137 (390)
T PRK08133 60 NPTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGI--ETTFVDLTDLD 137 (390)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence 455666667777777777777777666555444433344456776655433 233344445555554 55665544333
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTL 132 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~ 132 (187)
.+.... .+.-.+|++..+ +......++.+.++.++ |-.+++|++.
T Consensus 138 ~l~~~i-----~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~ 185 (390)
T PRK08133 138 AWRAAV-----RPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCF 185 (390)
T ss_pred HHHHhc-----CcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCC
Confidence 333332 234568887533 22222223444444444 5567777764
No 451
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=88.87 E-value=4.5 Score=34.74 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=61.0
Q ss_pred HHhhcCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhh
Q 029836 14 LLKLINAKNTMEIGVFTGYSLLATALAIP--DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQ 89 (187)
Q Consensus 14 l~~~~~~~~vLeiG~g~G~~~~~l~~~~~--~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~ 89 (187)
+.....+++||-.| |+|.++.++.+.+- ...+++.+|.++..+....+.++..-...++.++.||..+. +.....
T Consensus 244 i~~~~~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~ 322 (588)
T COG1086 244 IGAMLTGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAME 322 (588)
T ss_pred HHhHcCCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHh
Confidence 34456788999888 66887777665432 13789999999999888887777642246788899988763 233321
Q ss_pred cccCCCceeEEEEcCC
Q 029836 90 DEKYHGTFDFVFVDAD 105 (187)
Q Consensus 90 ~~~~~~~~D~v~~d~~ 105 (187)
.-+.|.||.-+.
T Consensus 323 ----~~kvd~VfHAAA 334 (588)
T COG1086 323 ----GHKVDIVFHAAA 334 (588)
T ss_pred ----cCCCceEEEhhh
Confidence 346899997654
No 452
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=88.80 E-value=1.1 Score=34.02 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=31.5
Q ss_pred HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHH
Q 029836 13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60 (187)
Q Consensus 13 ~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a 60 (187)
.++....-+++|-+|++. ++.++|..+...+.|+.+|++|......
T Consensus 35 ~~le~~~~k~~lI~G~Yl--tG~~iA~~L~~~~eV~lvDI~p~lk~ll 80 (252)
T PF06690_consen 35 YWLEGEEFKQALIFGAYL--TGNFIASALSKKCEVTLVDIHPHLKELL 80 (252)
T ss_pred HHhcccccceEEEEEEEe--ehHHHHHHhccCceEEEEeCcHHHHHHh
Confidence 333334445999999763 4456677665456999999999776543
No 453
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.76 E-value=7.8 Score=28.55 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=46.0
Q ss_pred cCCCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEE
Q 029836 18 INAKNTMEIGVFTGYSLLATALAI--PDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFR 76 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~--~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~ 76 (187)
.+..+|+-+|||. .+.++++.+ ..-++++.+|.+. ...+.+++++++.+-.-+++..
T Consensus 19 L~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 19 LRSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVD 96 (197)
T ss_pred HHhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 3567899999864 444444433 2247899998652 2245566667766543445555
Q ss_pred eCCchHHHHHHhhcccCCCceeEEEEcCC
Q 029836 77 EGPALPLLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 77 ~~d~~~~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
.....+..+.+ -..||+|+...+
T Consensus 97 ~~~~~~~~~~~------~~~~dvVi~~~~ 119 (197)
T cd01492 97 TDDISEKPEEF------FSQFDVVVATEL 119 (197)
T ss_pred ecCccccHHHH------HhCCCEEEECCC
Confidence 44333222333 357899987554
No 454
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=88.69 E-value=11 Score=30.23 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=54.4
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
+..+++-+|+| .|..+..+++.. +.++++++.+++....+. +..|. +. .+...+. +.+... ...+
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~---~~~Ga-~~-~i~~~~~-~~~~~~------~~~~ 245 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEAL---EHLGA-DD-YLVSSDA-AEMQEA------ADSL 245 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH---HhcCC-cE-EecCCCh-HHHHHh------cCCC
Confidence 56788877653 444556677765 467888888776544433 33454 21 1111121 222222 2358
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
|++|--.. ....++.+.+.++++|.++.-..
T Consensus 246 D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 246 DYIIDTVP---VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred cEEEECCC---chHHHHHHHHHhccCCEEEEECC
Confidence 88874321 23456777889999998886443
No 455
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=88.68 E-value=6.7 Score=31.48 Aligned_cols=96 Identities=21% Similarity=0.229 Sum_probs=54.6
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC---CchHHHHHHhhcccC
Q 029836 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDEKY 93 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~~ 93 (187)
.+..+||-.|+| .|..+..+++..+ ...+++++.+++..+.+++ .+.. .++.. +..+.+.....
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~---- 253 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITG---- 253 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhC----
Confidence 456678777654 4555566676653 2348889888876665533 3331 22222 22222222211
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
...+|+|+--.. . ......+++.|+++|.++.
T Consensus 254 ~~~~d~vld~vg-~--~~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 254 GRGVDVVVEALG-K--PETFKLALDVVRDGGRAVV 285 (367)
T ss_pred CCCCCEEEEeCC-C--HHHHHHHHHHHhcCCEEEE
Confidence 346899984221 1 1356778899999998875
No 456
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.64 E-value=6.5 Score=30.64 Aligned_cols=95 Identities=18% Similarity=0.122 Sum_probs=53.1
Q ss_pred CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHc--------CC---------CCceEEEeCCchHH
Q 029836 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA--------GV---------AHKIDFREGPALPL 83 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~--------~~---------~~~i~~~~~d~~~~ 83 (187)
++|.-||+|.=..++...-.. .+.+|+.+|.+++.++.+++.++.. .. ..++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 468888886433222221111 2568999999999888877664321 11 0123222 222111
Q ss_pred HHHHhhcccCCCceeEEEEcCCC--cccHHHHHHHHhcccCCeEEE
Q 029836 84 LDQLIQDEKYHGTFDFVFVDADK--DNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 84 l~~~~~~~~~~~~~D~v~~d~~~--~~~~~~~~~~~~~L~~gG~lv 127 (187)
-..-|+|+.-.+. +....+++.+.+.++++.+|+
T Consensus 82 ----------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 ----------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred ----------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 1345888876542 234567777777777777654
No 457
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.59 E-value=2.8 Score=33.13 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=26.6
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..+|+||+--...+..+.++.+.+++++++.++.
T Consensus 71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 5789999876655567788888888999987763
No 458
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=88.58 E-value=3.9 Score=32.15 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=47.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcccCCC
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDEKYHG 95 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~ 95 (187)
+.+++|-.| |+|.++..+++.+- .+.+|+++..++.............+...+++++.+|..+. +..+. .
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~------~ 76 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI------D 76 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH------c
Confidence 357888888 67888888877653 34688777666554333322222222235788888887653 33332 3
Q ss_pred ceeEEEEcC
Q 029836 96 TFDFVFVDA 104 (187)
Q Consensus 96 ~~D~v~~d~ 104 (187)
..|.|+..+
T Consensus 77 ~~d~vih~A 85 (325)
T PLN02989 77 GCETVFHTA 85 (325)
T ss_pred CCCEEEEeC
Confidence 578887654
No 459
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=88.56 E-value=9.3 Score=29.20 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=44.8
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEeC
Q 029836 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFREG 78 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~ 78 (187)
+..+|+-+|+| .|......+...+ -++++.+|.+. ...+.+++.+++.+-.-+++.+..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 56799999996 3443333333322 46888887532 234555666766554334555554
Q ss_pred CchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836 79 PALP-LLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 79 d~~~-~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
...+ ....+ -..||+|+.-.+
T Consensus 110 ~i~~~~~~~~------~~~~DiVi~~~D 131 (245)
T PRK05690 110 RLDDDELAAL------IAGHDLVLDCTD 131 (245)
T ss_pred cCCHHHHHHH------HhcCCEEEecCC
Confidence 4322 22233 247899886554
No 460
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.50 E-value=11 Score=29.78 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=50.1
Q ss_pred CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCce
Q 029836 19 NAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 19 ~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
.+++++-+|.|. |......++.+ +.+|+.+|.++...+.++ ..|. ++. +. +.++.. -..+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~----~~G~----~~~--~~-~~l~~~------l~~a 211 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARIT----EMGL----SPF--HL-SELAEE------VGKI 211 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HcCC----eee--cH-HHHHHH------hCCC
Confidence 578999999863 22333344443 469999999976544433 3332 222 11 222332 2468
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
|+||.-.+. .-.-+...+.+++|++++
T Consensus 212 DiVI~t~p~---~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 212 DIIFNTIPA---LVLTKEVLSKMPPEALII 238 (296)
T ss_pred CEEEECCCh---hhhhHHHHHcCCCCcEEE
Confidence 999975431 123355667889988765
No 461
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=88.46 E-value=14 Score=30.96 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHH-HHHHHHHHHcCCCCceEEEe--CCc
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHY-EKGLPIIQKAGVAHKIDFRE--GPA 80 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~-~~a~~~~~~~~~~~~i~~~~--~d~ 80 (187)
+|....+=+.++.....+..+-..+|+......+...++++.+|++.+..-... ....+.++..|. ++.++. .|.
T Consensus 68 ~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi--~v~~vd~~~d~ 145 (437)
T PRK05613 68 NPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGI--EVTFVENPDDP 145 (437)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCe--EEEEECCCCCH
Confidence 455666666666766677888888888666554444355566787765443333 333455566564 455553 123
Q ss_pred hHHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcC
Q 029836 81 LPLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTL 132 (187)
Q Consensus 81 ~~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~ 132 (187)
.++...+ .....+|++... .......++.+.++.++ |-.+++|++.
T Consensus 146 e~l~~~l------~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~ 194 (437)
T PRK05613 146 ESWQAAV------QPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTI 194 (437)
T ss_pred HHHHHhC------CccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCC
Confidence 2222222 334567776433 21122234444444444 4456666664
No 462
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=88.35 E-value=6.2 Score=32.77 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|....+-..++.....+..+-.++|...+...+...+.++.+|+..+..-. ........++..+. .+.++..+..+
T Consensus 57 ~pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi--~v~~~d~~d~e 134 (425)
T PRK06084 57 NPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGI--ETRFAAHDDIA 134 (425)
T ss_pred CchHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhccccee--EEEEECCCCHH
Confidence 4667777788887777777777777776655554433444567777665322 23333332222222 33444332223
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 133 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 133 (187)
.+.... .....+|++..+ +......++.+.++.+. |-.+|+|++..
T Consensus 135 ~le~ai-----~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a 183 (425)
T PRK06084 135 ALEALI-----DERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVA 183 (425)
T ss_pred HHHHHh-----ccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence 333332 234568887632 21111113444443333 55677777754
No 463
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.33 E-value=7.6 Score=27.95 Aligned_cols=77 Identities=17% Similarity=0.056 Sum_probs=41.6
Q ss_pred EEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc------------------hHHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 22 NTMEIGVFT-GYSLLATALAIPDDGKILALDITK------------------EHYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 22 ~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~------------------~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|+-+|||. |......+...+ -++++.+|.+. ...+.+++.+++.+-.-+++.+......
T Consensus 1 ~VlViG~GglGs~ia~~La~~G-vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 478889873 443333332222 36899999875 2344556666655433345444443322
Q ss_pred -HHHHHhhcccCCCceeEEEEcCC
Q 029836 83 -LLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 83 -~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
.+..+ -..+|+|+.-.+
T Consensus 80 ~~~~~~------l~~~DlVi~~~d 97 (174)
T cd01487 80 NNLEGL------FGDCDIVVEAFD 97 (174)
T ss_pred hhHHHH------hcCCCEEEECCC
Confidence 22333 246898886533
No 464
>PRK08507 prephenate dehydrogenase; Validated
Probab=88.26 E-value=3.2 Score=32.17 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=49.8
Q ss_pred EEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCcee
Q 029836 22 NTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFD 98 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~---~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D 98 (187)
+|.-||+ |..+..++..+.. ..+|+++|.+++..+.++ ..|.... ..+. ... .+ .|
T Consensus 2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~----~~g~~~~----~~~~----~~~------~~-aD 60 (275)
T PRK08507 2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL----ELGLVDE----IVSF----EEL------KK-CD 60 (275)
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH----HCCCCcc----cCCH----HHH------hc-CC
Confidence 4666776 4555554444321 237999999987766543 2333111 1121 122 22 69
Q ss_pred EEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 99 FVFVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 99 ~v~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
+||+-.+.......+..+.+ ++++.+++
T Consensus 61 ~Vilavp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 61 VIFLAIPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred EEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence 99988776677777888877 88877554
No 465
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=88.17 E-value=5.6 Score=26.19 Aligned_cols=90 Identities=17% Similarity=0.079 Sum_probs=51.2
Q ss_pred EEEEEcccccHHHHH-HHhhCCCCCEEE-EEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836 22 NTMEIGVFTGYSLLA-TALAIPDDGKIL-ALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF 99 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~-l~~~~~~~~~v~-~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~ 99 (187)
++.-||+|.-..... -+....++.+++ .+|.+++..+.+ .+..+. . ...|..+.+. ...+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~---~~~~~~----~-~~~~~~~ll~--------~~~~D~ 65 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF---AEKYGI----P-VYTDLEELLA--------DEDVDA 65 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH---HHHTTS----E-EESSHHHHHH--------HTTESE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH---HHHhcc----c-chhHHHHHHH--------hhcCCE
Confidence 577888865432222 122232355655 568887665544 334343 2 4456655554 347999
Q ss_pred EEEcCCCcccHHHHHHHHhcccCCeEEEEeC
Q 029836 100 VFVDADKDNYVNYHKRLIELVKVGGVIGYDN 130 (187)
Q Consensus 100 v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~ 130 (187)
|++..+...+.+.... .++.|--+++.-
T Consensus 66 V~I~tp~~~h~~~~~~---~l~~g~~v~~EK 93 (120)
T PF01408_consen 66 VIIATPPSSHAEIAKK---ALEAGKHVLVEK 93 (120)
T ss_dssp EEEESSGGGHHHHHHH---HHHTTSEEEEES
T ss_pred EEEecCCcchHHHHHH---HHHcCCEEEEEc
Confidence 9998776555554444 555666666543
No 466
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=88.17 E-value=3.1 Score=32.77 Aligned_cols=77 Identities=16% Similarity=0.104 Sum_probs=45.6
Q ss_pred EEEcccccHHHHHHHhhCCC--CCEEEEEeCCchHHHHHHHHHHHcCCCCceEE----EeCCchHH--HHHHhhcccCCC
Q 029836 24 MEIGVFTGYSLLATALAIPD--DGKILALDITKEHYEKGLPIIQKAGVAHKIDF----REGPALPL--LDQLIQDEKYHG 95 (187)
Q Consensus 24 LeiG~g~G~~~~~l~~~~~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~----~~~d~~~~--l~~~~~~~~~~~ 95 (187)
|-.| |.|.++..+.+.+-. ..+++.+|.++..+-..++.++.....+++++ +.+|..+. +..+.. ..
T Consensus 2 LVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~----~~ 76 (293)
T PF02719_consen 2 LVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFE----EY 76 (293)
T ss_dssp EEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT------
T ss_pred EEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHh----hc
Confidence 4444 788888888765521 26899999999998888877754322234543 57888663 344421 34
Q ss_pred ceeEEEEcCC
Q 029836 96 TFDFVFVDAD 105 (187)
Q Consensus 96 ~~D~v~~d~~ 105 (187)
.+|+||.-+.
T Consensus 77 ~pdiVfHaAA 86 (293)
T PF02719_consen 77 KPDIVFHAAA 86 (293)
T ss_dssp T-SEEEE---
T ss_pred CCCEEEEChh
Confidence 7899997765
No 467
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=88.02 E-value=9.4 Score=31.76 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=30.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHH
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGL 61 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~ 61 (187)
++.+|--||. |+.+..++..+..+.+|+++|++++.++...
T Consensus 5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 4567777755 7777777776765678999999998877655
No 468
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.99 E-value=2.4 Score=34.10 Aligned_cols=97 Identities=8% Similarity=-0.060 Sum_probs=54.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-HcCCC------CceEEEeCCchHHHHHHhhc
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ-KAGVA------HKIDFREGPALPLLDQLIQD 90 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~-~~~~~------~~i~~~~~d~~~~l~~~~~~ 90 (187)
....+|.-||+|. ++..++..+...+.++....+++..+..++.-. ...++ .++.. ..|..+.
T Consensus 5 ~~~mkI~IiGaGa--~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a------- 74 (341)
T PRK12439 5 KREPKVVVLGGGS--WGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEA------- 74 (341)
T ss_pred cCCCeEEEECCCH--HHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHH-------
Confidence 3456899998854 444444333323356677777776655443210 00111 11211 1222211
Q ss_pred ccCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 91 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 91 ~~~~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
....|+|++--+.......++.+.+.++++..++
T Consensus 75 ---~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vI 108 (341)
T PRK12439 75 ---ANCADVVVMGVPSHGFRGVLTELAKELRPWVPVV 108 (341)
T ss_pred ---HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence 1356999988777778888999998898887554
No 469
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.96 E-value=1.7 Score=33.64 Aligned_cols=71 Identities=10% Similarity=0.121 Sum_probs=53.7
Q ss_pred hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 17 ~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
+.++..-+|+|+..|.||-.+.+. +-.|++||.-+-+. ++-.. ..++....|...+-|. ...
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma~-----sL~dt---g~v~h~r~DGfk~~P~-------r~~ 270 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMAQ-----SLMDT---GQVTHLREDGFKFRPT-------RSN 270 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhhh-----hhhcc---cceeeeeccCcccccC-------CCC
Confidence 456778999999999999998864 68999999876432 22222 4678888888877663 457
Q ss_pred eeEEEEcCC
Q 029836 97 FDFVFVDAD 105 (187)
Q Consensus 97 ~D~v~~d~~ 105 (187)
.|..++|..
T Consensus 271 idWmVCDmV 279 (358)
T COG2933 271 IDWMVCDMV 279 (358)
T ss_pred CceEEeehh
Confidence 899999975
No 470
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.93 E-value=9 Score=29.81 Aligned_cols=93 Identities=12% Similarity=0.015 Sum_probs=52.5
Q ss_pred EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCC---CceEEEeCCchHHHHHHhhcccCCCce
Q 029836 22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVA---HKIDFREGPALPLLDQLIQDEKYHGTF 97 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~l~~~~~~~~~~~~~ 97 (187)
+|.-||+|. .+..++..+. .+.+|+.++.+++.++..++ .+.. ..... .......... .+.+
T Consensus 2 ~I~IiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~-~~~~~~~~~~-------~~~~ 67 (304)
T PRK06522 2 KIAILGAGA--IGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITV-PVLAADDPAE-------LGPQ 67 (304)
T ss_pred EEEEECCCH--HHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceee-cccCCCChhH-------cCCC
Confidence 578888853 3344333332 14689999987766544432 2321 11100 0000011111 2468
Q ss_pred eEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 98 DFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 98 D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
|+|++-.........++.+.+.+.++..++.
T Consensus 68 d~vila~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 68 DLVILAVKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred CEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence 9999887766778888888888888876653
No 471
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=87.90 E-value=6.8 Score=33.07 Aligned_cols=86 Identities=12% Similarity=0.103 Sum_probs=51.3
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
..+++++-+|+|. |......++.+ +.+|+.+|.++.....+.. .|. ++ .+..+.+ ..
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~----~G~----~~--~~leell----------~~ 309 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAM----EGY----QV--VTLEDVV----------ET 309 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHh----cCc----ee--ccHHHHH----------hc
Confidence 3678999999874 33333344443 4689999998765433322 122 22 1222222 35
Q ss_pred eeEEEEcCCCcccHHHH-HHHHhcccCCeEEEE
Q 029836 97 FDFVFVDADKDNYVNYH-KRLIELVKVGGVIGY 128 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~-~~~~~~L~~gG~lv~ 128 (187)
.|+|+.... ....+ ......||+|++|+-
T Consensus 310 ADIVI~atG---t~~iI~~e~~~~MKpGAiLIN 339 (476)
T PTZ00075 310 ADIFVTATG---NKDIITLEHMRRMKNNAIVGN 339 (476)
T ss_pred CCEEEECCC---cccccCHHHHhccCCCcEEEE
Confidence 799987542 23344 366788999999984
No 472
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.90 E-value=10 Score=30.75 Aligned_cols=81 Identities=14% Similarity=-0.002 Sum_probs=46.6
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEe
Q 029836 18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFRE 77 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~ 77 (187)
.+..+||-+|||. |...+..+...+ -++++.+|.+. ...+.+++.+++.+-.-+++.+.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 3567999999973 443333333322 47888888754 34566777777765433444444
Q ss_pred CCchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836 78 GPALP-LLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 78 ~d~~~-~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
..... ....+ -..+|+|+...+
T Consensus 105 ~~i~~~~~~~~------~~~~DvVvd~~d 127 (355)
T PRK05597 105 RRLTWSNALDE------LRDADVILDGSD 127 (355)
T ss_pred eecCHHHHHHH------HhCCCEEEECCC
Confidence 43321 12222 246898886654
No 473
>PRK07503 methionine gamma-lyase; Provisional
Probab=87.90 E-value=13 Score=30.69 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|...++-+.++........+-+++|+..+...+...+.++.+|+.....-. .....+..++..|. ++.++..+..+
T Consensus 64 ~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 141 (403)
T PRK07503 64 NPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGV--TVRHVDLTDPA 141 (403)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCE--EEEEeCCCCHH
Confidence 4556666677777666666666666665544444333454566766543221 22223333444443 34444333223
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccC-CeEEEEeCcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 133 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~ 133 (187)
.+.... .+...+|++..+ +.....-++.+.++.++ |..+++|++..
T Consensus 142 ~l~~~i-----~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a 190 (403)
T PRK07503 142 ALKAAI-----SDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYC 190 (403)
T ss_pred HHHHhc-----CccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 333322 234568887432 22122223344444444 55677777764
No 474
>PLN02427 UDP-apiose/xylose synthase
Probab=87.88 E-value=1.8 Score=35.16 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=48.5
Q ss_pred cCCCEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchHHHHHHHHHHHcC---CCCceEEEeCCchHH--HHHHhhc
Q 029836 18 INAKNTMEIGVFTGYSLLATALAIPD--DGKILALDITKEHYEKGLPIIQKAG---VAHKIDFREGPALPL--LDQLIQD 90 (187)
Q Consensus 18 ~~~~~vLeiG~g~G~~~~~l~~~~~~--~~~v~~vd~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~--l~~~~~~ 90 (187)
.++++||-+| |+|+++.++++.+-. +.+|++++.++..... +...+ ...+++++.+|..+. +...
T Consensus 12 ~~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~----l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~--- 83 (386)
T PLN02427 12 IKPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKH----LLEPDTVPWSGRIQFHRINIKHDSRLEGL--- 83 (386)
T ss_pred ccCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhh----hhccccccCCCCeEEEEcCCCChHHHHHH---
Confidence 4567899887 789999998887743 3689999976543321 11111 124689999988653 3333
Q ss_pred ccCCCceeEEEEcC
Q 029836 91 EKYHGTFDFVFVDA 104 (187)
Q Consensus 91 ~~~~~~~D~v~~d~ 104 (187)
-..+|.||.-+
T Consensus 84 ---~~~~d~ViHlA 94 (386)
T PLN02427 84 ---IKMADLTINLA 94 (386)
T ss_pred ---hhcCCEEEEcc
Confidence 23478887544
No 475
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.88 E-value=9.2 Score=28.34 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=47.6
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCC
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYH 94 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~ 94 (187)
+.+++|-.|++ |.++..+++.+. .+.+|++++.+++....+.+.+... .++.++.+|..+. +..+.+.. ...
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45789999864 555566555442 3578999999887666554444432 3577777776532 11111110 002
Q ss_pred CceeEEEEcC
Q 029836 95 GTFDFVFVDA 104 (187)
Q Consensus 95 ~~~D~v~~d~ 104 (187)
+.+|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 4578887654
No 476
>PRK07063 short chain dehydrogenase; Provisional
Probab=87.85 E-value=9.5 Score=28.80 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=52.1
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCC
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYH 94 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~ 94 (187)
+++++|-.|+. |.++..+++.+. .+.+|+.++.+++..+...+.+...+...++.++..|..+. +..+.+.. ...
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56789988864 555666655543 35789999998887777666666532234677888776432 22221110 013
Q ss_pred CceeEEEEcC
Q 029836 95 GTFDFVFVDA 104 (187)
Q Consensus 95 ~~~D~v~~d~ 104 (187)
+.+|.++...
T Consensus 85 g~id~li~~a 94 (260)
T PRK07063 85 GPLDVLVNNA 94 (260)
T ss_pred CCCcEEEECC
Confidence 5789888754
No 477
>PRK07050 cystathionine beta-lyase; Provisional
Probab=87.82 E-value=14 Score=30.34 Aligned_cols=123 Identities=13% Similarity=0.083 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHH-HHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYE-KGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~-~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|...++-+.++.....+.++-..+|+..+...+...++++.+|+..+..-.... .........|. ++.++.....+
T Consensus 64 ~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi--~v~~vd~~~~~ 141 (394)
T PRK07050 64 TPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGI--TVRFYDPLIGA 141 (394)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCe--EEEEECCCCHH
Confidence 4667777777888777888888777777766555444555677877775544332 23334445454 44454332222
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCC-eEEEEeCcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVG-GVIGYDNTLW 133 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~g-G~lv~~~~~~ 133 (187)
.+.... .+.-.+|++..+ +.-....++.+.++.+.. -.+++|++..
T Consensus 142 ~l~~~i-----~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a 190 (394)
T PRK07050 142 GIADLI-----QPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYS 190 (394)
T ss_pred HHHHhc-----CCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcc
Confidence 233322 234578886543 223445566666655654 4667777753
No 478
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.74 E-value=3.5 Score=32.73 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=53.3
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHH---HH---HcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836 22 NTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPI---IQ---KAGVAHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~---~~---~~~~~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
+|.-||+ |.++..++..+.. +..|+.++.+++..+..++. .+ ....+.++++. .+..+.+ .
T Consensus 2 kI~IiGa--Ga~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~---------~ 69 (326)
T PRK14620 2 KISILGA--GSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL---------S 69 (326)
T ss_pred EEEEECc--CHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH---------h
Confidence 4677877 4444444443321 36788888887665544432 11 00111122222 2222111 2
Q ss_pred CceeEEEEcCCCcccHHHHHHHHh-cccCCeEEE
Q 029836 95 GTFDFVFVDADKDNYVNYHKRLIE-LVKVGGVIG 127 (187)
Q Consensus 95 ~~~D~v~~d~~~~~~~~~~~~~~~-~L~~gG~lv 127 (187)
+..|+||+--......+.++.+.+ .++++..++
T Consensus 70 ~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv 103 (326)
T PRK14620 70 DNATCIILAVPTQQLRTICQQLQDCHLKKNTPIL 103 (326)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEE
Confidence 467999998776777888888887 888776554
No 479
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=87.63 E-value=3.9 Score=31.60 Aligned_cols=90 Identities=14% Similarity=0.222 Sum_probs=49.7
Q ss_pred CCCEEEEEcccccH----HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836 19 NAKNTMEIGVFTGY----SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 19 ~~~~vLeiG~g~G~----~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
...+|+-+|+|+-- -+.-+-+.+|.++.++-.|+.+-. .+.-..+.+|...+.+ .
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-------------SDa~~~~~~Dc~t~~~--------~ 119 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-------------SDADQSIVGDCRTYMP--------P 119 (299)
T ss_dssp TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B--------------SSSEEEES-GGGEEE--------S
T ss_pred cCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-------------cccCCceeccccccCC--------C
Confidence 45799999987532 344466778878888888886521 1233456788766544 5
Q ss_pred CceeEEEEcCC-------------Cccc-HHHHHHHHhcccCCeEEEEe
Q 029836 95 GTFDFVFVDAD-------------KDNY-VNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 95 ~~~D~v~~d~~-------------~~~~-~~~~~~~~~~L~~gG~lv~~ 129 (187)
.++|+||.|.. ++.. .-+...+...|+-||-+.+.
T Consensus 120 ~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 120 DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 79999999854 1222 22234445789999999874
No 480
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=87.62 E-value=16 Score=30.89 Aligned_cols=42 Identities=14% Similarity=0.032 Sum_probs=25.6
Q ss_pred CEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHH
Q 029836 21 KNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLP 62 (187)
Q Consensus 21 ~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~ 62 (187)
++|.-||+|........+-+. +.+.+|+++|++++.++..++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~ 44 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNS 44 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHc
Confidence 357778776554433322111 114679999999988776543
No 481
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.56 E-value=9.9 Score=28.36 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=44.3
Q ss_pred cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc------------------hHHHHHHHHHHHcCCCCceEEEeC
Q 029836 18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITK------------------EHYEKGLPIIQKAGVAHKIDFREG 78 (187)
Q Consensus 18 ~~~~~vLeiG~g~-G~~~~~l~~~~~~~~~v~~vd~~~------------------~~~~~a~~~~~~~~~~~~i~~~~~ 78 (187)
.+..+|+-+|||. |......+...+ -++++.+|.+. ...+.+++.+++.+..-+++.+..
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~ 104 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSG-VGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE 104 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcC-CCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence 3567899999973 443333333322 36899999872 234556666666544334544443
Q ss_pred CchH-HHHHHhhcccCCCceeEEEEc
Q 029836 79 PALP-LLDQLIQDEKYHGTFDFVFVD 103 (187)
Q Consensus 79 d~~~-~l~~~~~~~~~~~~~D~v~~d 103 (187)
...+ ....+ -..+|+|+.-
T Consensus 105 ~i~~~~~~~~------~~~~DvVI~a 124 (212)
T PRK08644 105 KIDEDNIEEL------FKDCDIVVEA 124 (212)
T ss_pred ecCHHHHHHH------HcCCCEEEEC
Confidence 3322 22233 2468998854
No 482
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.54 E-value=6.5 Score=31.41 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=55.4
Q ss_pred CCEEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHH-------cCCC-----CceEEEeCCchHHHH
Q 029836 20 AKNTMEIGVFT-GY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQK-------AGVA-----HKIDFREGPALPLLD 85 (187)
Q Consensus 20 ~~~vLeiG~g~-G~-~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~-------~~~~-----~~i~~~~~d~~~~l~ 85 (187)
.++|--||+|. |. ++..++.+ +.+|+..|++++..+.+++.+++ .+.. .++++. .+. .
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a---G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l----~ 78 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH---GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATI----E 78 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCH----H
Confidence 36788898872 33 33333332 68999999999887766654432 2211 122222 121 1
Q ss_pred HHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeCc
Q 029836 86 QLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNT 131 (187)
Q Consensus 86 ~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~ 131 (187)
.. -..-|+|+-... .+--..+|..+.+.++++. ++.+|+
T Consensus 79 ~a------v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnT 119 (321)
T PRK07066 79 AC------VADADFIQESAPEREALKLELHERISRAAKPDA-IIASST 119 (321)
T ss_pred HH------hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECC
Confidence 11 135688886544 2223567788888888887 444443
No 483
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.45 E-value=2.9 Score=33.16 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=29.7
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
...+|+|++....-+..+.++.+.+.+++...+++
T Consensus 65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEE
Confidence 35799999988777788899999999999987764
No 484
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=87.43 E-value=3.2 Score=33.21 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=48.4
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHH-HHcC--CCCceEEEeCCchHH--HHHHhhccc
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPII-QKAG--VAHKIDFREGPALPL--LDQLIQDEK 92 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~-~~~~--~~~~i~~~~~d~~~~--l~~~~~~~~ 92 (187)
+.++||-+| |+|+++.++++.+- .+.+|+++|............+ ...+ ...+++++.+|..+. +..+.
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~---- 88 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC---- 88 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh----
Confidence 457899988 78999999887773 2468999997554322111111 1111 114688899998653 33332
Q ss_pred CCCceeEEEEcC
Q 029836 93 YHGTFDFVFVDA 104 (187)
Q Consensus 93 ~~~~~D~v~~d~ 104 (187)
..+|.||.-+
T Consensus 89 --~~~d~ViHlA 98 (348)
T PRK15181 89 --KNVDYVLHQA 98 (348)
T ss_pred --hCCCEEEECc
Confidence 3578887654
No 485
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=87.43 E-value=5.9 Score=28.69 Aligned_cols=92 Identities=8% Similarity=0.063 Sum_probs=48.2
Q ss_pred HHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCC--CceEEEeCCchH--HHH
Q 029836 11 FSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--HKIDFREGPALP--LLD 85 (187)
Q Consensus 11 l~~l~~~-~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~--~l~ 85 (187)
+...+.. .....|+.+|||.-.-...+....+ +.+++-+|. |+.++.-++.+++.+.. .+.+++..|..+ +..
T Consensus 69 v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~-~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~ 146 (183)
T PF04072_consen 69 VREFIAKHPGARQVVNLGAGLDTRAYRLDNPAG-GVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWID 146 (183)
T ss_dssp HHHHHHHHTTESEEEEET-TT--HHHHHHHTTT-TEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHH
T ss_pred HHHhhccCCCCcEEEEcCCCCCchHHHhhcccc-ceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHH
Confidence 3334433 3445999999977766666655432 467777776 55666666666665321 234567777653 455
Q ss_pred HHhhcccCCCceeEEEEcC
Q 029836 86 QLIQDEKYHGTFDFVFVDA 104 (187)
Q Consensus 86 ~~~~~~~~~~~~D~v~~d~ 104 (187)
.+.+.+.+.+..=++++-+
T Consensus 147 ~L~~~g~~~~~ptl~i~Eg 165 (183)
T PF04072_consen 147 ALPKAGFDPDRPTLFIAEG 165 (183)
T ss_dssp HHHHCTT-TTSEEEEEEES
T ss_pred HHHHhCCCCCCCeEEEEcc
Confidence 5554332233444555544
No 486
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=87.42 E-value=6.4 Score=28.24 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=51.7
Q ss_pred CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeE
Q 029836 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDF 99 (187)
Q Consensus 20 ~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~ 99 (187)
.++.+-+|+..-..-...+.. + .+++..||.++--+.. + .+-++..-...++...... +.++||+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-G-A~~iltveyn~L~i~~--~--------~~dr~ssi~p~df~~~~~~---y~~~fD~ 66 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-G-AAKILTVEYNKLEIQE--E--------FRDRLSSILPVDFAKNWQK---YAGSFDF 66 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-C-CceEEEEeecccccCc--c--------cccccccccHHHHHHHHHH---hhccchh
Confidence 467888888754443333332 3 5789999987522110 0 0111111112233333221 1578898
Q ss_pred EEEcCC--------------CcccHHHHHHHHhcccCCeEEEEe
Q 029836 100 VFVDAD--------------KDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 100 v~~d~~--------------~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+..-+. +......+..+..+||+||.+++.
T Consensus 67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence 754321 233466777788999999999874
No 487
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.32 E-value=4.1 Score=35.22 Aligned_cols=79 Identities=14% Similarity=0.053 Sum_probs=49.9
Q ss_pred CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHHc-----CC--CCceEEEeCCchHH--HHHHh
Q 029836 19 NAKNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKA-----GV--AHKIDFREGPALPL--LDQLI 88 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~-~~~~~v~~vd~~~~~~~~a~~~~~~~-----~~--~~~i~~~~~d~~~~--l~~~~ 88 (187)
.++.+|-+| |+|.++..+++.+ ..+.+|+++..+++......+.+... +. ..+++++.+|..+. +...
T Consensus 79 ~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a- 156 (576)
T PLN03209 79 DEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA- 156 (576)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH-
Confidence 456788777 4677777777655 23578999988887665544444332 11 13588888888653 2222
Q ss_pred hcccCCCceeEEEEcC
Q 029836 89 QDEKYHGTFDFVFVDA 104 (187)
Q Consensus 89 ~~~~~~~~~D~v~~d~ 104 (187)
-+..|+||...
T Consensus 157 -----LggiDiVVn~A 167 (576)
T PLN03209 157 -----LGNASVVICCI 167 (576)
T ss_pred -----hcCCCEEEEcc
Confidence 34679888654
No 488
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=87.32 E-value=3.3 Score=33.95 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=25.3
Q ss_pred EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH
Q 029836 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLP 62 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~ 62 (187)
+|--||. |+.+..++..+..+..|+++|++++.++.+.+
T Consensus 2 kI~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 2 KITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 3455665 55444444333335789999999999877765
No 489
>PRK07049 methionine gamma-lyase; Validated
Probab=87.29 E-value=16 Score=30.41 Aligned_cols=129 Identities=15% Similarity=0.132 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHH-HHHHHHHHcCCCCceEEEeCCchH
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYE-KGLPIIQKAGVAHKIDFREGPALP 82 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~-~a~~~~~~~~~~~~i~~~~~d~~~ 82 (187)
+|....+-+.++.......++-+++|...+...+...+.++.+|+..++.-.... .+...++..|. ..+.+..+...+
T Consensus 82 ~Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi-~~v~~~~~~d~~ 160 (427)
T PRK07049 82 HPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGV-GAVGFADGLSEA 160 (427)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCc-EEEEEeCCCCHH
Confidence 4556667777777777778888888887766555545555667777665544443 33444566665 224443322222
Q ss_pred HHHHHhhcccCCCceeEEEEcCC--Ccc---cHHHHHHHHhccc----CCeEEEEeCcCC
Q 029836 83 LLDQLIQDEKYHGTFDFVFVDAD--KDN---YVNYHKRLIELVK----VGGVIGYDNTLW 133 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~D~v~~d~~--~~~---~~~~~~~~~~~L~----~gG~lv~~~~~~ 133 (187)
.+..............+|++..+ +.. -.+.+.++.+..+ .+-++++||++.
T Consensus 161 ~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~ 220 (427)
T PRK07049 161 AIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLL 220 (427)
T ss_pred HHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcc
Confidence 23222110000134578888754 211 1233333333322 345677888753
No 490
>PRK08655 prephenate dehydrogenase; Provisional
Probab=87.21 E-value=4.3 Score=33.89 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=47.6
Q ss_pred EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCceeEE
Q 029836 22 NTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFV 100 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~~D~v 100 (187)
+|.-|| |.|..+..++..+.. +.+|++++.+++.... .....+. .. ..+..+. -...|+|
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~---~a~~~gv----~~-~~~~~e~----------~~~aDvV 62 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE---VAKELGV----EY-ANDNIDA----------AKDADIV 62 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHH---HHHHcCC----ee-ccCHHHH----------hccCCEE
Confidence 567776 335555555544421 3589999988765422 1222222 11 1122111 1345888
Q ss_pred EEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 101 FVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 101 ~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
++..+.......++.+.+.+++|.+++
T Consensus 63 Ilavp~~~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 63 IISVPINVTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred EEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence 876665555667777777777777554
No 491
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=87.08 E-value=16 Score=30.19 Aligned_cols=124 Identities=18% Similarity=0.131 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHHHHcCCCCceEEEeC-Cch
Q 029836 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDI-TKEHYEKGLPIIQKAGVAHKIDFREG-PAL 81 (187)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~-~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~ 81 (187)
+|....+=..++.+-.....+-.-||.+.++..+...+.++-+|+..+. --...+...+.+++.|+ .++++.. +..
T Consensus 62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi--~~~~~d~~~~~ 139 (396)
T COG0626 62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGV--EVTFVDPGDDE 139 (396)
T ss_pred CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCe--EEEEECCCChH
Confidence 4555556666667777889999999999988877766665667766654 34455666666777654 4554443 333
Q ss_pred HHHHHHhhcccCCCceeEEEEcCC--CcccHHHHHHHHhcccCC-eEEEEeCcCCC
Q 029836 82 PLLDQLIQDEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVG-GVIGYDNTLWG 134 (187)
Q Consensus 82 ~~l~~~~~~~~~~~~~D~v~~d~~--~~~~~~~~~~~~~~L~~g-G~lv~~~~~~~ 134 (187)
.....+. .+..++||+..+ +.--...+..+.++-+.. -.+++||+...
T Consensus 140 ~~~~~~~-----~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat 190 (396)
T COG0626 140 ALEAAIK-----EPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT 190 (396)
T ss_pred HHHHHhc-----ccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc
Confidence 4444442 236899999865 222222334444444444 56677777543
No 492
>PRK10083 putative oxidoreductase; Provisional
Probab=87.05 E-value=10 Score=29.85 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=52.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhh-CCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALA-IPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~-~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
..+..+||-+|+| .|..+..+++. ++ ...+++++.+++..+.+++ .|...-+.....+ +...+... .
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~---~~~~~~~~---g 226 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEP---LGEALEEK---G 226 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCcccc---HHHHHhcC---C
Confidence 3456788888853 22233445553 23 3468889988877766553 3431111111112 22222111 1
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
..+|+++ |.. .....+...++.|+++|.++.-
T Consensus 227 ~~~d~vi-d~~--g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 227 IKPTLII-DAA--CHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCCCEEE-ECC--CCHHHHHHHHHHhhcCCEEEEE
Confidence 2345555 332 1134567778899999998864
No 493
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=87.04 E-value=9.9 Score=30.08 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=56.1
Q ss_pred hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCc-hHHHHHHhhcccCC
Q 029836 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA-LPLLDQLIQDEKYH 94 (187)
Q Consensus 17 ~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~~ 94 (187)
..+..++|-.|+| .|..+..+++.. +.++++++.+++..+.++ ..|. . +++.... .++...+.... .
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~----~~g~-~--~~i~~~~~~~~~~~~~~~~--~ 231 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELAR----ELGA-V--ATVNASEVEDVAAAVRDLT--G 231 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHH----HhCC-C--EEEccccchhHHHHHHHHh--C
Confidence 3456788888853 344555566664 478999988887766653 3344 1 2222211 12222221111 2
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
+.+|+++--.. ....+..+++.|+++|.++.
T Consensus 232 ~~~d~vi~~~g---~~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 232 GGAHVSVDALG---IPETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred CCCCEEEEcCC---CHHHHHHHHHHhhcCCEEEE
Confidence 37898884221 13456678889999998875
No 494
>PRK07680 late competence protein ComER; Validated
Probab=87.01 E-value=6.4 Score=30.43 Aligned_cols=87 Identities=11% Similarity=0.011 Sum_probs=49.2
Q ss_pred EEEEEcccccHHHHHHHhhCCC-C----CEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 22 NTMEIGVFTGYSLLATALAIPD-D----GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 22 ~vLeiG~g~G~~~~~l~~~~~~-~----~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
+|.-||+ |..+..++..+.. + ..++..+.+++..+.+.+.+ ..+... .+..+.+ ..
T Consensus 2 ~I~iIG~--G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~------~g~~~~-~~~~~~~----------~~ 62 (273)
T PRK07680 2 NIGFIGT--GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY------PGIHVA-KTIEEVI----------SQ 62 (273)
T ss_pred EEEEECc--cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc------CCeEEE-CCHHHHH----------Hh
Confidence 4667886 4444444443211 1 36888888876654433211 123332 2333332 24
Q ss_pred eeEEEEcCCCcccHHHHHHHHhcccCCeEEE
Q 029836 97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIG 127 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv 127 (187)
.|+||+-.......+.++.+.+.++++..++
T Consensus 63 aDiVilav~p~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 63 SDLIFICVKPLDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred CCEEEEecCHHHHHHHHHHHHhhcCCCCEEE
Confidence 5899887665566777777777888777554
No 495
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=86.97 E-value=7.6 Score=29.13 Aligned_cols=83 Identities=22% Similarity=0.186 Sum_probs=51.2
Q ss_pred CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHH--HHHHhhcc-cCC
Q 029836 19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDE-KYH 94 (187)
Q Consensus 19 ~~~~vLeiG~g~G~~~~~l~~~~~-~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~-~~~ 94 (187)
+.+++|-.| |+|..+..+++.+. .+.+|++++.++...+...+.++..+ .++.++.+|..+. +..+.+.. ...
T Consensus 3 ~~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 3 KGKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356788777 46777777776553 35689999998887766655555433 4677888876542 22221110 002
Q ss_pred CceeEEEEcC
Q 029836 95 GTFDFVFVDA 104 (187)
Q Consensus 95 ~~~D~v~~d~ 104 (187)
+.+|.|+...
T Consensus 80 ~~~d~vi~~a 89 (258)
T PRK12429 80 GGVDILVNNA 89 (258)
T ss_pred CCCCEEEECC
Confidence 4689988654
No 496
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.78 E-value=2 Score=35.11 Aligned_cols=48 Identities=19% Similarity=0.045 Sum_probs=33.1
Q ss_pred HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHH
Q 029836 11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGL 61 (187)
Q Consensus 11 l~~l~~~~~~~~vLeiG~g~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~ 61 (187)
-..++...+..+||-|.+|... ++.++..-| .+|++||++|......+
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N-~L~yL~~~P--~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCN-ALDYLLAGP--KRIHAVDLNPAQNALLE 74 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCch-HHHHHhcCC--ceEEEEeCCHHHHHHHH
Confidence 3455667788899999765444 444444433 79999999998765544
No 497
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=86.76 E-value=12 Score=28.51 Aligned_cols=81 Identities=17% Similarity=0.125 Sum_probs=45.8
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHHcCCCCceEEEe
Q 029836 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFRE 77 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~ 77 (187)
.+..+|+-+||| .|......+...+ -++++.+|.+. ...+.+++.+++.+..-+++.+.
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~ 100 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN 100 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 356789999986 4554444443333 47888888543 23455566666655433455544
Q ss_pred CCchH-HHHHHhhcccCCCceeEEEEcCC
Q 029836 78 GPALP-LLDQLIQDEKYHGTFDFVFVDAD 105 (187)
Q Consensus 78 ~d~~~-~l~~~~~~~~~~~~~D~v~~d~~ 105 (187)
....+ ....+ -..+|+|+.-.+
T Consensus 101 ~~i~~~~~~~~------~~~~DlVvd~~D 123 (240)
T TIGR02355 101 AKLDDAELAAL------IAEHDIVVDCTD 123 (240)
T ss_pred ccCCHHHHHHH------hhcCCEEEEcCC
Confidence 33322 23333 347899986554
No 498
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=86.67 E-value=15 Score=29.39 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=54.2
Q ss_pred CCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCCCc
Q 029836 19 NAKNTMEIGVF-TGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGT 96 (187)
Q Consensus 19 ~~~~vLeiG~g-~G~~~~~l~~~~~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 96 (187)
++.+||-.|+| .|..+..+++.. +. ++++++.+++....++ +.|...-+.....+..+....+.... ....
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~-~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT-GGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh-CCCC
Confidence 56688888753 233445566665 35 8999998887665543 34542111111111111111111110 0246
Q ss_pred eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 97 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 97 ~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
+|+++--.. ....+...++.|+++|.++.-
T Consensus 250 ~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 250 ADVVIEASG---HPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CcEEEECCC---ChHHHHHHHHHhccCCEEEEE
Confidence 898884321 134566778899999998864
No 499
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=86.64 E-value=10 Score=29.91 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=55.5
Q ss_pred hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeCCchHHHHHHhhcccCC
Q 029836 16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYH 94 (187)
Q Consensus 16 ~~~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~ 94 (187)
.....++||-.|+| .|..+..+++.. +.+++.++.+++..+.+++ .|. . .++...-.++...+.. .
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~-~--~~i~~~~~~~~~~~~~----~ 226 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGA-H--HYIDTSKEDVAEALQE----L 226 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCC-c--EEecCCCccHHHHHHh----c
Confidence 34456788888853 333445566665 4679999998877666543 343 1 1222211122222211 1
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 029836 95 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 128 (187)
Q Consensus 95 ~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~ 128 (187)
..+|+++-.. .....++..++.|+++|.++.
T Consensus 227 ~~~d~vi~~~---g~~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 227 GGAKLILATA---PNAKAISALVGGLAPRGKLLI 257 (333)
T ss_pred CCCCEEEECC---CchHHHHHHHHHcccCCEEEE
Confidence 2478887421 124567778889999998875
No 500
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=86.50 E-value=13 Score=30.15 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=53.9
Q ss_pred cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHHcCCCCceEEEeC---CchHHHHHHhhcccC
Q 029836 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDEKY 93 (187)
Q Consensus 18 ~~~~~vLeiG~g-~G~~~~~l~~~~~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~~ 93 (187)
.+..+||-.|+| .|..++.+++..+ ..++++++.+++..+.+++ .|...-+..... +..+.+..+..
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~---- 272 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVTK---- 272 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhcC----
Confidence 345678777653 2333444566543 2379999988875544443 444111111111 12222222211
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 029836 94 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 129 (187)
Q Consensus 94 ~~~~D~v~~d~~~~~~~~~~~~~~~~L~~gG~lv~~ 129 (187)
...+|+|+ |.. ......++.+++.|+++|.++.-
T Consensus 273 g~gvDvvl-d~~-g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 273 GWGADIQV-EAA-GAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCCCEEE-ECC-CCcHHHHHHHHHHHHcCCEEEEE
Confidence 24689887 432 12234677788899999998853
Done!