BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029837
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 72/90 (80%), Gaps = 1/90 (1%)
Query: 71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R SGM+KN F+E+V
Sbjct: 16 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQV 75
Query: 131 STRFRKHDEII-GCQSGKRSMMAATDLLNA 159
S+ F + D II GCQSG RS+ A TDLL+A
Sbjct: 76 SSHFGQSDNIIVGCQSGGRSIKATTDLLHA 105
>pdb|2JTQ|A Chain A, Rhodanese From E.Coli
pdb|2JTR|A Chain A, Rhodanese Persulfide From E. Coli
pdb|2JTS|A Chain A, Rhodanese With Anions From E. Coli
Length = 85
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 15/77 (19%)
Query: 90 YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE-VSTRF-RKHDEI-IGCQSG 146
++DVR PE++ H GAIN+P LK V+E ++T K+D + + C +G
Sbjct: 4 WIDVRVPEQYQQEHVQGAINIP------------LKEVKERIATAVPDKNDTVKVYCNAG 51
Query: 147 KRSMMAATDLLNAVSTH 163
++S A L TH
Sbjct: 52 RQSGQAKEILSEMGYTH 68
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 40/150 (26%)
Query: 26 HGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQ 85
HG + G +++ D+ + IG+ L++ + +L G+ V T + ++ +
Sbjct: 309 HGGHIEGTINIPYDKNFINQIGWY----LNYDQEINLIGDYHLVSKATHTLQLIGYDDI- 363
Query: 86 AGHRY----------------------LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN 123
AG++ LDVR E++ GH + A++VP+ +
Sbjct: 364 AGYQLPQSKIQTRSIHSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLL------- 416
Query: 124 LKFVEEVSTRFRKHDEI-IGCQSGKRSMMA 152
E F K+D I + CQSG RS +A
Sbjct: 417 -----ETDLPFNKNDVIYVHCQSGIRSSIA 441
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
D+R+ E + GH G IN+PY + + L + +E++
Sbjct: 300 FDLRSKEAYHGGHIEGTINIPYDKNFINQIGWYLNYDQEIN 340
>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein
From Saccharomyces Cerevisiae
Length = 139
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDE----IIGCQSG 146
+DVR P E+S H +INVPY + L+F +++ K D I C SG
Sbjct: 44 VDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIG--IPKPDSAKELIFYCASG 101
Query: 147 KRSMMA 152
KR A
Sbjct: 102 KRGGEA 107
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 33.1 bits (74), Expect = 0.088, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 83 LLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIG 142
+++ G +DVR P E G G+IN+P + + +EEV D I
Sbjct: 499 IVENGGYLIDVREPNELKQGXIKGSINIP--------LDELRDRLEEVPV---DKDIYIT 547
Query: 143 CQSGKRSMMAATDL 156
CQ G R +AA L
Sbjct: 548 CQLGXRGYVAARXL 561
>pdb|1YT8|A Chain A, Crystal Structure Of Thiosulfate Sulfurtransferase From
Pseudomonas Aeruginosa
Length = 539
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 91 LDVRTPEEFSAGHATGAINVP 111
LDVRTPEE+ AGH G+ + P
Sbjct: 286 LDVRTPEEYEAGHLPGSRSTP 306
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 32.0 bits (71), Expect = 0.22, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 19/72 (26%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF----RKHDEIIGCQSG 146
LDVR P E G GA+N+P V+E+ R + + II CQ G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRXHELPKDKEIIIFCQVG 534
Query: 147 KRSMMAATDLLN 158
R +A L+N
Sbjct: 535 LRGNVAYRQLVN 546
>pdb|3AAY|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
pdb|3AAY|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
Length = 277
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 32/113 (28%)
Query: 91 LDVRTPEEFSA----------------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
+DVR+P+EFS GH GAINVP+ T K EE++ +
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGT--FKSDEELAKLY 218
Query: 135 RKHDEIIGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTEEKLKS 187
G + K ++ A + S+H TWF+ +LL + +K+
Sbjct: 219 AD----AGLDNSKETI--AYXRIGERSSH--------TWFVLRELLGHQNVKN 257
>pdb|3HWI|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
pdb|3HWI|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
Length = 298
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 44/119 (36%)
Query: 91 LDVRTPEEFSA----------------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
+DVR+P+EFS GH GAINVP+ T K EE++ +
Sbjct: 182 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGT--FKSDEELAKLY 239
Query: 135 ------RKHDEIIGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTEEKLKS 187
+ I C+ G+R S+H TWF+ +LL + +K+
Sbjct: 240 ADAGLDNSKETIAYCRIGER------------SSH--------TWFVLRELLGHQNVKN 278
>pdb|3AAX|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
pdb|3AAX|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
Length = 277
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 44/119 (36%)
Query: 91 LDVRTPEEFSA----------------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
+DVR+P+EFS GH GAINVP+ T K EE++ +
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGT--FKSDEELAKLY 218
Query: 135 ------RKHDEIIGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTEEKLKS 187
+ I C+ G+R S+H TWF+ +LL + +K+
Sbjct: 219 ADAGLDNSKETIAYCRIGER------------SSH--------TWFVLRELLGHQNVKN 257
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
P V L Q G LDVR +E++ GH A ++P ++K + +V R
Sbjct: 378 PDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP--------LSKLAAHIHDVP---R 426
Query: 136 KHDEIIGCQSGKRSMMAATDLLNA 159
+ C++G RS +AA+ LL A
Sbjct: 427 DGSVCVYCRTGGRSAIAAS-LLRA 449
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 66 LEAVGVPTSV---PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
L +G P V P RV + G LDVR + F+ H G++N+P+
Sbjct: 264 LAELGAPERVDLPPERV--RAWREGGVVLDVRPADAFAKRHLAGSLNIPW 311
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 52/129 (40%), Gaps = 29/129 (22%)
Query: 80 AHELLQAGHRYLDVRTPEE-FSA-----------GHATGAINVPYMYRVGSGMTKNLKFV 127
A ELL A HR LD+R P + +SA T A +P + VG M +
Sbjct: 59 AEELLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIPLL--VGGTMLYFKALL 116
Query: 128 E----------EVSTRFRKHDEIIGCQSGKRSMMAATDLLNAVSTHANYP---SKPL-TW 173
E EV R + G +S R + D + A H N P S+ L +
Sbjct: 117 EGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQ-EVDPVAAARIHPNDPQRLSRALEVF 175
Query: 174 FLSNQLLTE 182
F+S + LTE
Sbjct: 176 FISGKTLTE 184
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 25/127 (19%)
Query: 80 AHELLQAGHRYLDVRTPEE-FSA-----------GHATGAINVP--------YMYRVGSG 119
A ELL A HR LD+R P + +SA T A +P Y + G
Sbjct: 59 AEELLAAPHRLLDIRDPSQAYSAADFRRDALAEXADITAAGRIPLLVGGTXLYFKALLEG 118
Query: 120 MTKNLKFVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAVSTHANYP---SKPL-TWFL 175
++ EV R + G +S R + D + A H N P S+ L +F+
Sbjct: 119 LSPLPSADPEVRARIEQQAAEQGWESLHRQLQ-EVDPVAAARIHPNDPQRLSRALEVFFI 177
Query: 176 SNQLLTE 182
S + LTE
Sbjct: 178 SGKTLTE 184
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 19/72 (26%)
Query: 91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF----RKHDEIIGCQSG 146
LDVR P E G GA+N+P V+E+ R + + II Q G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRMHELPKDKEIIIFSQVG 534
Query: 147 KRSMMAATDLLN 158
R +A L+N
Sbjct: 535 LRGNVAYRQLVN 546
>pdb|2YZS|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Aquifex Aeolicus
pdb|2YZS|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Aquifex Aeolicus
Length = 315
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 80 AHELLQAGHRYLDVRTPEEFSAGHATGAI-NVPYMYRVGSGM-------TKNLKFVEEVS 131
H L++ YLD + + G+I N+ Y+Y++ + T ++ + V
Sbjct: 83 GHLLIKQVEHYLDAQKRLYLAKSFVIGSILNLEYVYKISADTYLNKVKETNSIPELXSVE 142
Query: 132 TRFRKH-----DEIIGCQSGKRSMMAATDLLNAVSTHAN 165
FRK +E+ G + KR+ + LNA+ + N
Sbjct: 143 AEFRKLCYKKLEEVTGWELEKRTKRPPQNPLNALISFGN 181
>pdb|2HIM|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 155 DLLNAVSTHANYPSKPLTWFLSNQL 179
+LLNA+ ANYP +T F +N+L
Sbjct: 151 NLLNALYVAANYPINEVTLFFNNRL 175
>pdb|2P2D|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 155 DLLNAVSTHANYPSKPLTWFLSNQL 179
+LLNA+ ANYP +T F +N+L
Sbjct: 151 NLLNALYVAANYPINEVTLFFNNRL 175
>pdb|3NTX|A Chain A, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
pdb|3NTX|B Chain B, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
Length = 341
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 154 TDLLNAVSTHANYPSKPLTWFLSNQLL 180
T+LLNA+ AN+P ++ F +NQL
Sbjct: 133 TNLLNALYLAANHPVNEVSLFFNNQLF 159
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 28.1 bits (61), Expect = 3.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 91 LDVRTPEEFSAGHATGAINVP 111
LDVR P E G GA+N+P
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP 510
>pdb|2OCD|A Chain A, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|B Chain B, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|C Chain C, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|D Chain D, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
Length = 337
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 155 DLLNAVSTHANYPSKPLTWFLSNQL 179
+LLNA+ ANYP +T F +N+L
Sbjct: 131 NLLNALHVAANYPINEVTLFFNNRL 155
>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase
Length = 108
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 75 VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINV 110
+ V AH+ LQ L D+R P+ F+ GHA A ++
Sbjct: 7 INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHL 43
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 75 VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINV 110
+ V AH+ LQ L D+R P+ F+ GHA A ++
Sbjct: 7 INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHL 43
>pdb|3K66|A Chain A, X-Ray Crystal Structure Of The E2 Domain Of C. Elegans
Apl-1
pdb|3K6B|A Chain A, X-Ray Crystal Structure Of The E2 Domain Of Apl-1 From C.
Elegans, In Complex With Sucrose Octasulfate (Sos)
Length = 239
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 115 RVGSGMTKNLKFVEEVSTRFRK-----HDEIIGCQSGKRSMMAATDLLNAVSTHANYPSK 169
++ + K + +EE R RK H+E + ++ A D A++TH N P+K
Sbjct: 64 QMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQAMLNEKKRDATHDYRQALATHVNKPNK 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,779,910
Number of Sequences: 62578
Number of extensions: 172030
Number of successful extensions: 417
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 27
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)