Query 029837
Match_columns 187
No_of_seqs 242 out of 1887
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:26:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1530 Rhodanese-related sulf 99.9 2.6E-25 5.6E-30 154.9 9.7 113 69-181 19-135 (136)
2 PLN02160 thiosulfate sulfurtra 99.9 1.1E-24 2.4E-29 157.6 12.5 115 72-186 14-132 (136)
3 cd01533 4RHOD_Repeat_2 Member 99.9 2.5E-23 5.3E-28 145.0 11.2 97 69-177 6-109 (109)
4 cd01527 RHOD_YgaP Member of th 99.9 2.1E-23 4.5E-28 142.8 9.9 96 73-180 2-99 (99)
5 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 1.1E-22 2.3E-27 151.2 13.4 108 71-180 34-162 (162)
6 PRK00162 glpE thiosulfate sulf 99.9 5.1E-23 1.1E-27 143.2 10.9 100 72-183 4-106 (108)
7 cd01518 RHOD_YceA Member of th 99.9 6.2E-23 1.3E-27 141.0 7.7 96 74-175 3-101 (101)
8 cd01523 RHOD_Lact_B Member of 99.9 3.1E-22 6.6E-27 137.3 9.5 95 75-174 1-99 (100)
9 cd01524 RHOD_Pyr_redox Member 99.9 1E-21 2.2E-26 132.3 10.1 87 75-174 1-89 (90)
10 cd01521 RHOD_PspE2 Member of t 99.9 1.4E-21 3.1E-26 136.3 10.2 97 72-180 7-110 (110)
11 cd01534 4RHOD_Repeat_3 Member 99.9 1.4E-21 3E-26 132.9 9.5 88 75-174 1-94 (95)
12 cd01519 RHOD_HSP67B2 Member of 99.9 1.3E-21 2.8E-26 135.3 8.8 98 76-174 2-105 (106)
13 cd01520 RHOD_YbbB Member of th 99.9 2.1E-21 4.6E-26 139.0 10.0 100 75-175 1-126 (128)
14 cd01526 RHOD_ThiF Member of th 99.9 2.5E-21 5.5E-26 137.5 9.7 107 71-179 6-117 (122)
15 cd01528 RHOD_2 Member of the R 99.9 4.6E-21 9.9E-26 131.7 10.0 89 75-175 2-98 (101)
16 cd01444 GlpE_ST GlpE sulfurtra 99.9 5.7E-21 1.2E-25 129.7 10.2 88 75-174 2-95 (96)
17 cd01447 Polysulfide_ST Polysul 99.8 5E-21 1.1E-25 131.6 9.0 99 75-177 1-103 (103)
18 cd01535 4RHOD_Repeat_4 Member 99.8 6.2E-21 1.3E-25 139.4 9.9 92 80-183 2-97 (145)
19 cd01522 RHOD_1 Member of the R 99.8 7E-21 1.5E-25 134.3 9.6 100 75-176 1-105 (117)
20 cd01448 TST_Repeat_1 Thiosulfa 99.8 1.5E-20 3.2E-25 133.4 10.3 103 75-177 2-122 (122)
21 cd01449 TST_Repeat_2 Thiosulfa 99.8 1.3E-20 2.9E-25 132.7 9.4 101 75-175 1-118 (118)
22 cd01525 RHOD_Kc Member of the 99.8 1.1E-20 2.5E-25 130.4 8.3 97 75-174 1-104 (105)
23 cd01530 Cdc25 Cdc25 phosphatas 99.8 2.2E-20 4.8E-25 132.5 9.5 90 74-174 3-120 (121)
24 PRK08762 molybdopterin biosynt 99.8 2.8E-20 6.1E-25 155.4 11.6 102 72-185 2-107 (376)
25 smart00450 RHOD Rhodanese Homo 99.8 4.4E-20 9.5E-25 125.1 9.4 94 86-179 3-100 (100)
26 cd01529 4RHOD_Repeats Member o 99.8 3.4E-20 7.3E-25 126.2 8.5 83 86-174 11-95 (96)
27 PF00581 Rhodanese: Rhodanese- 99.8 1E-19 2.2E-24 126.5 9.2 100 76-175 1-112 (113)
28 PRK11493 sseA 3-mercaptopyruva 99.8 9.2E-20 2E-24 146.9 9.7 110 75-184 155-281 (281)
29 PRK11493 sseA 3-mercaptopyruva 99.8 1.7E-19 3.8E-24 145.2 10.6 112 73-184 5-137 (281)
30 cd01532 4RHOD_Repeat_1 Member 99.8 1.1E-19 2.3E-24 122.9 7.8 79 86-175 9-92 (92)
31 TIGR02981 phageshock_pspE phag 99.8 2.6E-19 5.6E-24 123.0 9.1 78 87-176 18-98 (101)
32 PRK10287 thiosulfate:cyanide s 99.8 2.6E-19 5.7E-24 123.5 8.9 77 87-175 20-99 (104)
33 PRK09629 bifunctional thiosulf 99.8 4E-19 8.8E-24 155.8 11.5 112 73-184 9-131 (610)
34 cd01445 TST_Repeats Thiosulfat 99.8 7.5E-19 1.6E-23 127.4 10.5 100 75-174 1-137 (138)
35 COG0607 PspE Rhodanese-related 99.8 3.4E-19 7.4E-24 123.6 8.3 85 87-183 20-109 (110)
36 cd00158 RHOD Rhodanese Homolog 99.8 6.1E-19 1.3E-23 117.5 8.0 83 81-174 3-89 (89)
37 PLN02723 3-mercaptopyruvate su 99.8 7.6E-19 1.6E-23 143.9 10.1 109 75-183 192-318 (320)
38 PRK05320 rhodanese superfamily 99.8 8.5E-19 1.8E-23 139.1 10.0 101 70-176 107-216 (257)
39 PRK01415 hypothetical protein; 99.8 8E-19 1.7E-23 137.7 9.6 100 72-177 111-213 (247)
40 PLN02723 3-mercaptopyruvate su 99.8 1.2E-18 2.5E-23 142.8 10.7 111 73-183 22-152 (320)
41 cd01531 Acr2p Eukaryotic arsen 99.8 1.7E-18 3.6E-23 121.3 8.2 95 73-176 2-112 (113)
42 COG2897 SseA Rhodanese-related 99.8 3.3E-18 7.2E-23 136.6 10.2 111 74-184 157-284 (285)
43 PRK07411 hypothetical protein; 99.8 5.7E-18 1.2E-22 142.0 10.7 104 70-180 279-386 (390)
44 PRK07878 molybdopterin biosynt 99.8 5.7E-18 1.2E-22 142.1 10.5 98 71-179 285-387 (392)
45 PRK00142 putative rhodanese-re 99.7 6.1E-18 1.3E-22 137.8 9.9 100 71-176 110-212 (314)
46 PRK09629 bifunctional thiosulf 99.7 7.6E-18 1.6E-22 147.9 10.9 110 74-183 148-272 (610)
47 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 1E-17 2.2E-22 117.4 7.9 92 74-174 3-112 (113)
48 PRK11784 tRNA 2-selenouridine 99.7 1.4E-17 3.1E-22 137.0 9.3 107 76-182 4-135 (345)
49 TIGR03167 tRNA_sel_U_synt tRNA 99.7 2.3E-17 5E-22 134.1 8.5 96 87-182 2-121 (311)
50 PRK05597 molybdopterin biosynt 99.7 3.7E-17 8E-22 135.6 9.4 92 72-175 260-354 (355)
51 COG2897 SseA Rhodanese-related 99.7 1.7E-16 3.8E-21 126.8 10.9 114 72-185 10-141 (285)
52 cd01446 DSP_MapKP N-terminal r 99.6 1.3E-15 2.9E-20 109.4 9.1 99 75-175 2-126 (132)
53 PRK05600 thiamine biosynthesis 99.6 2.3E-15 5E-20 125.3 8.6 92 74-172 272-370 (370)
54 PRK01269 tRNA s(4)U8 sulfurtra 99.4 2.8E-13 6.1E-18 116.6 8.8 77 78-166 398-479 (482)
55 COG1054 Predicted sulfurtransf 99.3 1.5E-12 3.3E-17 103.2 5.8 98 72-175 112-212 (308)
56 KOG2017 Molybdopterin synthase 99.2 2.4E-11 5.2E-16 98.1 6.4 100 71-177 315-420 (427)
57 KOG1529 Mercaptopyruvate sulfu 99.2 1.6E-10 3.4E-15 91.3 9.7 112 74-185 6-139 (286)
58 KOG3772 M-phase inducer phosph 99.1 1.3E-10 2.9E-15 93.5 6.6 94 72-176 155-276 (325)
59 KOG1529 Mercaptopyruvate sulfu 99.0 1.8E-09 3.8E-14 85.4 7.4 89 87-176 172-276 (286)
60 COG5105 MIH1 Mitotic inducer, 98.1 1E-05 2.2E-10 65.3 6.8 93 72-175 241-357 (427)
61 COG2603 Predicted ATPase [Gene 97.7 2.5E-05 5.5E-10 62.3 3.3 96 77-173 5-126 (334)
62 TIGR01244 conserved hypothetic 97.3 0.0023 5E-08 46.0 8.2 84 73-161 13-112 (135)
63 PF04273 DUF442: Putative phos 97.2 0.0022 4.8E-08 44.5 7.5 77 74-156 14-106 (110)
64 PRK00142 putative rhodanese-re 95.5 0.0019 4.1E-08 53.0 -1.7 39 75-113 16-54 (314)
65 KOG1093 Predicted protein kina 94.8 0.015 3.2E-07 50.9 1.6 91 72-173 621-718 (725)
66 COG3453 Uncharacterized protei 92.9 0.79 1.7E-05 32.2 7.0 80 72-157 13-108 (130)
67 PF13350 Y_phosphatase3: Tyros 92.4 1.1 2.5E-05 32.9 8.0 93 70-162 25-152 (164)
68 PLN02727 NAD kinase 92.2 0.8 1.7E-05 42.7 8.0 80 73-157 267-364 (986)
69 KOG1717 Dual specificity phosp 91.8 0.24 5.2E-06 39.6 3.8 36 74-113 5-41 (343)
70 cd00127 DSPc Dual specificity 91.5 0.88 1.9E-05 32.0 6.3 78 80-161 20-109 (139)
71 smart00195 DSPc Dual specifici 90.7 1.3 2.8E-05 31.3 6.5 79 80-162 19-107 (138)
72 KOG3636 Uncharacterized conser 90.1 0.75 1.6E-05 39.5 5.5 26 88-113 327-352 (669)
73 TIGR03167 tRNA_sel_U_synt tRNA 81.8 4 8.7E-05 33.6 5.6 66 72-146 135-206 (311)
74 PLN02460 indole-3-glycerol-pho 74.2 21 0.00046 29.7 7.6 90 75-165 214-315 (338)
75 PRK12361 hypothetical protein; 73.8 8.9 0.00019 34.0 5.8 79 76-158 109-199 (547)
76 PF00218 IGPS: Indole-3-glycer 73.1 3.1 6.8E-05 33.2 2.5 91 74-166 141-237 (254)
77 PF00782 DSPc: Dual specificit 68.9 14 0.00031 25.5 5.0 78 84-161 15-101 (133)
78 PTZ00393 protein tyrosine phos 67.9 31 0.00067 27.4 7.0 80 78-162 107-198 (241)
79 PRK13802 bifunctional indole-3 67.7 24 0.00052 32.4 7.2 89 75-165 144-238 (695)
80 PF05706 CDKN3: Cyclin-depende 64.8 16 0.00035 27.2 4.6 83 78-160 62-159 (168)
81 PTZ00242 protein tyrosine phos 62.3 44 0.00095 24.7 6.7 78 78-160 31-124 (166)
82 PF12404 DUF3663: Peptidase ; 61.3 8.5 0.00018 24.8 2.3 37 134-170 22-62 (77)
83 PRK13957 indole-3-glycerol-pho 59.2 50 0.0011 26.3 6.8 87 75-164 135-227 (247)
84 COG2518 Pcm Protein-L-isoaspar 56.9 18 0.00039 28.0 3.8 53 125-177 59-137 (209)
85 PF09992 DUF2233: Predicted pe 55.9 14 0.0003 27.1 3.0 39 134-172 97-142 (170)
86 PRK07688 thiamine/molybdopteri 55.8 11 0.00023 31.4 2.6 37 72-109 276-319 (339)
87 PF03853 YjeF_N: YjeF-related 52.1 39 0.00084 24.9 4.9 30 135-164 23-56 (169)
88 COG0513 SrmB Superfamily II DN 51.5 33 0.00072 30.2 5.1 33 139-171 275-308 (513)
89 COG0062 Uncharacterized conser 51.4 58 0.0013 25.1 5.8 36 133-168 43-85 (203)
90 COG0134 TrpC Indole-3-glycerol 50.5 82 0.0018 25.2 6.7 89 75-164 140-233 (254)
91 PRK11776 ATP-dependent RNA hel 50.0 36 0.00079 29.2 5.1 34 138-171 243-277 (460)
92 PF02590 SPOUT_MTase: Predicte 49.7 31 0.00067 25.3 4.0 45 129-173 59-110 (155)
93 COG0514 RecQ Superfamily II DN 49.0 19 0.00042 32.3 3.3 32 140-171 234-265 (590)
94 PRK00278 trpC indole-3-glycero 48.8 80 0.0017 25.1 6.5 90 76-166 145-239 (260)
95 COG2453 CDC14 Predicted protei 46.6 28 0.00061 26.0 3.5 30 132-161 100-133 (180)
96 COG1891 Uncharacterized protei 46.0 37 0.0008 25.8 3.9 34 74-112 7-40 (235)
97 TIGR00853 pts-lac PTS system, 45.4 31 0.00067 23.0 3.2 26 137-162 3-33 (95)
98 PRK09427 bifunctional indole-3 43.5 1E+02 0.0022 26.9 6.7 87 75-164 143-235 (454)
99 KOG0330 ATP-dependent RNA heli 43.2 44 0.00096 28.6 4.3 34 138-171 301-335 (476)
100 PF04122 CW_binding_2: Putativ 42.5 39 0.00085 21.9 3.3 36 136-172 49-84 (92)
101 PRK11192 ATP-dependent RNA hel 42.4 66 0.0014 27.4 5.5 35 137-171 245-280 (434)
102 PF00289 CPSase_L_chain: Carba 42.1 39 0.00083 23.2 3.3 27 138-164 3-29 (110)
103 PRK04837 ATP-dependent RNA hel 42.0 63 0.0014 27.4 5.3 35 137-171 255-290 (423)
104 COG2519 GCD14 tRNA(1-methylade 42.0 48 0.001 26.5 4.2 43 122-164 173-216 (256)
105 PRK10565 putative carbohydrate 38.2 69 0.0015 28.3 5.0 35 134-168 57-96 (508)
106 PTZ00110 helicase; Provisional 37.9 71 0.0015 28.4 5.1 36 136-171 376-412 (545)
107 PRK00103 rRNA large subunit me 37.4 81 0.0018 23.2 4.6 45 129-173 59-110 (157)
108 PLN03049 pyridoxine (pyridoxam 37.3 85 0.0018 27.4 5.4 31 138-168 60-95 (462)
109 smart00226 LMWPc Low molecular 37.3 33 0.00071 24.2 2.5 32 142-173 4-37 (140)
110 PRK09590 celB cellobiose phosp 37.1 44 0.00096 22.7 2.9 25 138-162 2-31 (104)
111 PF01451 LMWPc: Low molecular 37.0 27 0.00059 24.5 2.0 34 140-173 1-41 (138)
112 cd05564 PTS_IIB_chitobiose_lic 37.0 42 0.0009 22.3 2.8 24 139-162 1-29 (96)
113 PRK10590 ATP-dependent RNA hel 36.9 80 0.0017 27.2 5.2 34 138-171 246-280 (456)
114 PF01488 Shikimate_DH: Shikima 36.8 86 0.0019 22.0 4.6 32 136-167 11-42 (135)
115 TIGR03372 putres_am_tran putre 36.1 87 0.0019 27.1 5.3 48 127-174 123-177 (442)
116 cd00079 HELICc Helicase superf 35.7 1.3E+02 0.0028 20.0 5.3 35 136-170 27-62 (131)
117 PF07879 PHB_acc_N: PHB/PHA ac 35.5 44 0.00095 20.7 2.4 27 72-98 17-45 (64)
118 TIGR00614 recQ_fam ATP-depende 35.2 78 0.0017 27.4 4.9 36 136-171 225-261 (470)
119 TIGR01389 recQ ATP-dependent D 35.1 86 0.0019 28.0 5.3 35 137-171 224-259 (591)
120 PF02302 PTS_IIB: PTS system, 34.6 48 0.001 21.2 2.8 26 139-164 1-32 (90)
121 PRK10310 PTS system galactitol 34.0 64 0.0014 21.3 3.3 24 139-162 4-33 (94)
122 KOG0352 ATP-dependent DNA heli 33.9 33 0.00072 29.8 2.3 42 140-181 259-309 (641)
123 PRK12898 secA preprotein trans 33.7 1.7E+02 0.0036 26.9 6.8 34 137-170 473-507 (656)
124 PRK11634 ATP-dependent RNA hel 33.5 93 0.002 28.3 5.2 33 138-170 246-279 (629)
125 TIGR00197 yjeF_nterm yjeF N-te 33.4 1.3E+02 0.0029 22.9 5.4 29 134-162 42-74 (205)
126 TIGR01587 cas3_core CRISPR-ass 33.1 91 0.002 25.6 4.8 46 125-170 210-258 (358)
127 PLN02482 glutamate-1-semialdeh 33.0 1E+02 0.0023 26.9 5.3 47 127-174 145-195 (474)
128 COG0162 TyrS Tyrosyl-tRNA synt 32.9 1.3E+02 0.0027 25.9 5.6 28 150-177 54-81 (401)
129 PRK05298 excinuclease ABC subu 32.8 67 0.0015 29.3 4.2 47 125-171 434-481 (652)
130 PF10903 DUF2691: Protein of u 32.7 1.2E+02 0.0027 22.2 4.8 81 72-167 54-142 (153)
131 PRK04537 ATP-dependent RNA hel 32.4 1.1E+02 0.0023 27.5 5.3 36 136-171 256-292 (572)
132 COG0034 PurF Glutamine phospho 32.4 66 0.0014 28.0 3.8 31 136-166 347-381 (470)
133 PRK11057 ATP-dependent DNA hel 32.2 1.1E+02 0.0023 27.7 5.3 36 136-171 235-271 (607)
134 COG3526 Uncharacterized protei 31.9 53 0.0012 21.5 2.5 21 138-158 7-28 (99)
135 TIGR00631 uvrb excinuclease AB 31.6 79 0.0017 28.9 4.5 47 125-171 430-477 (655)
136 cd05565 PTS_IIB_lactose PTS_II 31.4 53 0.0011 22.2 2.6 24 139-162 2-30 (99)
137 KOG0572 Glutamine phosphoribos 31.2 70 0.0015 27.4 3.7 31 136-166 355-389 (474)
138 COG3414 SgaB Phosphotransferas 31.2 72 0.0016 21.3 3.1 25 138-162 2-32 (93)
139 COG2085 Predicted dinucleotide 31.0 2.5E+02 0.0055 21.8 7.4 28 137-164 147-176 (211)
140 PLN03050 pyridoxine (pyridoxam 30.9 84 0.0018 24.9 4.0 29 138-166 61-94 (246)
141 PRK08117 4-aminobutyrate amino 30.3 1.2E+02 0.0026 25.9 5.2 50 126-175 91-144 (433)
142 TIGR00640 acid_CoA_mut_C methy 30.0 2E+02 0.0044 20.3 5.6 19 76-94 18-37 (132)
143 PF13399 LytR_C: LytR cell env 29.9 67 0.0015 20.7 2.9 21 144-164 13-33 (90)
144 PRK07678 aminotransferase; Val 29.9 1.2E+02 0.0027 26.1 5.2 49 126-175 94-152 (451)
145 cd00133 PTS_IIB PTS_IIB: subun 29.0 63 0.0014 19.8 2.6 20 139-158 1-22 (84)
146 PRK11784 tRNA 2-selenouridine 28.9 1.8E+02 0.0039 24.3 5.9 35 75-110 152-187 (345)
147 PRK10499 PTS system N,N'-diace 28.6 74 0.0016 21.6 2.9 25 138-162 4-33 (106)
148 KOG1390 Acetyl-CoA acetyltrans 28.5 50 0.0011 27.5 2.3 52 125-176 70-125 (396)
149 PRK04914 ATP-dependent helicas 28.3 88 0.0019 30.0 4.3 35 137-171 493-529 (956)
150 PRK06148 hypothetical protein; 28.2 1.2E+02 0.0027 29.2 5.3 48 128-175 670-721 (1013)
151 KOG0029 Amine oxidase [Seconda 28.2 92 0.002 27.5 4.1 44 136-179 14-63 (501)
152 PTZ00424 helicase 45; Provisio 27.6 1.5E+02 0.0033 24.6 5.3 34 138-171 268-302 (401)
153 PLN02918 pyridoxine (pyridoxam 26.9 1.5E+02 0.0032 26.6 5.2 30 138-167 136-170 (544)
154 PRK06917 hypothetical protein; 26.9 1.8E+02 0.0038 25.2 5.6 50 126-175 79-138 (447)
155 PRK10669 putative cation:proto 26.8 1.4E+02 0.0031 26.4 5.2 47 138-184 418-467 (558)
156 PLN03137 ATP-dependent DNA hel 26.2 1.3E+02 0.0028 29.6 4.9 34 138-171 682-715 (1195)
157 COG4822 CbiK Cobalamin biosynt 25.9 1.7E+02 0.0037 23.0 4.7 43 124-166 121-172 (265)
158 PRK06918 4-aminobutyrate amino 25.9 1.6E+02 0.0034 25.4 5.2 50 126-175 102-156 (451)
159 cd05567 PTS_IIB_mannitol PTS_I 25.9 82 0.0018 20.2 2.7 24 139-162 2-31 (87)
160 PRK11391 etp phosphotyrosine-p 25.8 83 0.0018 22.5 3.0 35 138-173 3-40 (144)
161 PRK01297 ATP-dependent RNA hel 25.7 1.6E+02 0.0035 25.4 5.2 34 138-171 336-370 (475)
162 PRK08593 4-aminobutyrate amino 25.5 1.7E+02 0.0038 25.1 5.3 49 126-174 90-143 (445)
163 PF00975 Thioesterase: Thioest 25.1 86 0.0019 23.6 3.1 30 140-169 70-102 (229)
164 KOG0326 ATP-dependent RNA heli 25.1 1E+02 0.0022 25.9 3.6 32 134-165 320-351 (459)
165 PRK00615 glutamate-1-semialdeh 25.0 1.7E+02 0.0036 25.2 5.1 50 125-174 97-150 (433)
166 PF00899 ThiF: ThiF family; I 24.7 1.2E+02 0.0026 21.0 3.6 40 137-176 2-42 (135)
167 PF11181 YflT: Heat induced st 24.2 1.2E+02 0.0027 20.2 3.5 23 140-162 2-25 (103)
168 PRK05964 adenosylmethionine--8 24.1 1.9E+02 0.0041 24.5 5.3 49 126-174 90-148 (423)
169 PRK06916 adenosylmethionine--8 23.6 1.9E+02 0.0041 25.0 5.3 50 126-175 104-163 (460)
170 PF04343 DUF488: Protein of un 23.5 72 0.0016 22.0 2.2 20 78-97 3-24 (122)
171 PF03162 Y_phosphatase2: Tyros 23.4 1.4E+02 0.0031 21.9 3.9 75 88-162 34-119 (164)
172 COG2185 Sbm Methylmalonyl-CoA 23.3 2.7E+02 0.0058 20.3 5.1 38 134-171 60-103 (143)
173 PRK07481 hypothetical protein; 23.1 1.8E+02 0.004 25.0 5.1 50 126-175 91-151 (449)
174 PRK06062 hypothetical protein; 23.1 1.9E+02 0.0042 24.9 5.2 49 126-174 100-152 (451)
175 TIGR02689 ars_reduc_gluta arse 22.8 1.4E+02 0.0031 20.6 3.7 21 140-160 3-25 (126)
176 TIGR00246 tRNA_RlmH_YbeA rRNA 22.6 2E+02 0.0044 21.0 4.5 43 129-173 58-107 (153)
177 PRK05639 4-aminobutyrate amino 22.2 2.1E+02 0.0045 24.8 5.2 50 126-175 101-154 (457)
178 COG1576 Uncharacterized conser 22.2 3E+02 0.0065 20.3 5.2 45 127-172 57-108 (155)
179 PRK10537 voltage-gated potassi 22.0 4.5E+02 0.0097 22.4 7.1 30 138-167 241-270 (393)
180 PRK07495 4-aminobutyrate amino 21.9 2.2E+02 0.0047 24.4 5.2 49 126-174 88-141 (425)
181 PRK10126 tyrosine phosphatase; 21.7 99 0.0021 22.1 2.7 35 138-173 3-40 (147)
182 PRK13940 glutamyl-tRNA reducta 21.6 1.9E+02 0.0042 24.8 4.8 31 136-166 180-210 (414)
183 KOG0332 ATP-dependent RNA heli 21.6 1.8E+02 0.0039 25.0 4.4 38 134-171 328-365 (477)
184 PRK07986 adenosylmethionine--8 21.5 2.2E+02 0.0049 24.4 5.2 49 126-174 91-148 (428)
185 PF13580 SIS_2: SIS domain; PD 21.5 1.6E+02 0.0034 20.7 3.7 44 124-167 89-137 (138)
186 KOG0331 ATP-dependent RNA heli 21.4 2E+02 0.0043 25.6 4.9 36 136-171 340-376 (519)
187 TIGR00963 secA preprotein tran 21.1 1.8E+02 0.0039 27.1 4.7 36 134-169 402-438 (745)
188 TIGR03840 TMPT_Se_Te thiopurin 21.0 2.3E+02 0.005 21.7 4.8 39 126-168 22-64 (213)
189 TIGR01848 PHA_reg_PhaR polyhyd 21.0 1.1E+02 0.0024 21.0 2.6 27 72-98 17-45 (107)
190 PRK13104 secA preprotein trans 20.9 2E+02 0.0043 27.5 5.0 39 134-172 441-480 (896)
191 PRK01269 tRNA s(4)U8 sulfurtra 20.6 1.6E+02 0.0036 25.7 4.3 35 137-171 177-214 (482)
192 PRK13360 omega amino acid--pyr 20.5 2.4E+02 0.0051 24.3 5.2 49 126-174 94-152 (442)
193 COG3620 Predicted transcriptio 20.4 1.6E+02 0.0035 22.1 3.5 30 138-167 73-103 (187)
194 PF02879 PGM_PMM_II: Phosphogl 20.3 2.6E+02 0.0057 18.3 5.1 31 137-167 21-52 (104)
195 TIGR01849 PHB_depoly_PhaZ poly 20.2 2E+02 0.0044 24.7 4.6 77 78-169 121-206 (406)
196 COG1832 Predicted CoA-binding 20.1 1.5E+02 0.0032 21.5 3.2 29 136-164 15-47 (140)
197 PRK12389 glutamate-1-semialdeh 20.0 2.3E+02 0.0049 24.2 5.0 50 126-175 98-150 (428)
No 1
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.6e-25 Score=154.94 Aligned_cols=113 Identities=41% Similarity=0.623 Sum_probs=101.3
Q ss_pred cCCCcccCHHHHHHHHHCC-CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCC-CCcEE-EcCC
Q 029837 69 VGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK-HDEII-GCQS 145 (187)
Q Consensus 69 ~~~~~~v~~~~~~~~l~~~-~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~-~~~iv-~C~~ 145 (187)
.+.+..++.++++++++.+ .++||||+++||.+||||.+||||+......+...+++|++......++ ++.|| +|++
T Consensus 19 ~~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~S 98 (136)
T KOG1530|consen 19 ASNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCAS 98 (136)
T ss_pred cCCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEecc
Confidence 3556789999999999987 9999999999999999999999999866677788899999998766554 55999 9999
Q ss_pred ChhHHHHHHHHHHCCCCee-EecCcHhhhhhCCCcee
Q 029837 146 GKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLT 181 (187)
Q Consensus 146 g~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~~g~p~~ 181 (187)
|.||..|...|..+||++| .|.|||.+|.+.++|..
T Consensus 99 G~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 99 GVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred CcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 9999999999999999999 89999999999998753
No 2
>PLN02160 thiosulfate sulfurtransferase
Probab=99.92 E-value=1.1e-24 Score=157.58 Aligned_cols=115 Identities=42% Similarity=0.660 Sum_probs=94.7
Q ss_pred CcccCHHHHHHHHHCCCEEEecCChhhhccccCCCc--EEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChh
Q 029837 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~~~iIDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~r 148 (187)
...+++.++.++++++.+|||||++.||..|||||| +|+|+......+.....+++......++++++|| ||++|.|
T Consensus 14 ~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~R 93 (136)
T PLN02160 14 VVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGAR 93 (136)
T ss_pred eeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcHH
Confidence 456899999999987788999999999999999999 8999743222233334455555544467888999 9999999
Q ss_pred HHHHHHHHHHCCCCee-EecCcHhhhhhCCCceeccccC
Q 029837 149 SMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKLK 186 (187)
Q Consensus 149 s~~aa~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~~ 186 (187)
|..++..|...||++| .|.||+.+|...|+|+++...+
T Consensus 94 S~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~ 132 (136)
T PLN02160 94 SLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEEEE 132 (136)
T ss_pred HHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccccC
Confidence 9999999999999998 6889999999999999886543
No 3
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.90 E-value=2.5e-23 Score=144.99 Aligned_cols=97 Identities=22% Similarity=0.275 Sum_probs=81.4
Q ss_pred cCCCcccCHHHHHHHHHCC--CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcC--CCCCcEE-Ec
Q 029837 69 VGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII-GC 143 (187)
Q Consensus 69 ~~~~~~v~~~~~~~~l~~~--~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~iv-~C 143 (187)
......++++++.++++.+ .+|||||++.||..||||||+|+|+. .+......+ +++++|| ||
T Consensus 6 ~~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~------------~l~~~~~~l~~~~~~~ivv~C 73 (109)
T cd01533 6 VRHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGA------------ELVLRVGELAPDPRTPIVVNC 73 (109)
T ss_pred cccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHH------------HHHHHHHhcCCCCCCeEEEEC
Confidence 3445678999999998754 68999999999999999999999995 333333343 4578899 99
Q ss_pred CCChhHHHHHHHHHHCCCCe-e-EecCcHhhhhhCC
Q 029837 144 QSGKRSMMAATDLLNAVSTH-A-NYPSKPLTWFLSN 177 (187)
Q Consensus 144 ~~g~rs~~aa~~L~~~G~~~-v-~l~GG~~~W~~~g 177 (187)
++|.||..+++.|+..||++ + ++.||+.+|..+|
T Consensus 74 ~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 74 AGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 99999999999999999987 7 7899999999876
No 4
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.90 E-value=2.1e-23 Score=142.80 Aligned_cols=96 Identities=26% Similarity=0.342 Sum_probs=83.6
Q ss_pred cccCHHHHHHHHHCCCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhHHH
Q 029837 73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMM 151 (187)
Q Consensus 73 ~~v~~~~~~~~l~~~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs~~ 151 (187)
..++++++.++++++.+|||+|+++||..||||||+|+|+. .+......++++++|| ||++|.+|..
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~iv~~c~~g~~s~~ 69 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLS------------QLESEGLPLVGANAIIFHCRSGMRTQQ 69 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChh------------HhcccccCCCCCCcEEEEeCCCchHHH
Confidence 35789999999988889999999999999999999999995 2222222477889999 9999999999
Q ss_pred HHHHHHHCCCCee-EecCcHhhhhhCCCce
Q 029837 152 AATDLLNAVSTHA-NYPSKPLTWFLSNQLL 180 (187)
Q Consensus 152 aa~~L~~~G~~~v-~l~GG~~~W~~~g~p~ 180 (187)
++..|.++||+++ ++.||+.+|...|+|+
T Consensus 70 ~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 70 NAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred HHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 9999999999988 6899999999999875
No 5
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.90 E-value=1.1e-22 Score=151.21 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=81.1
Q ss_pred CCcccCHHHHHHHHHCC-CEEEecCChh----hhccc---------cCCCcEEeCcccccCCCCC-CCHH-HHHHHhhc-
Q 029837 71 VPTSVPVRVAHELLQAG-HRYLDVRTPE----EFSAG---------HATGAINVPYMYRVGSGMT-KNLK-FVEEVSTR- 133 (187)
Q Consensus 71 ~~~~v~~~~~~~~l~~~-~~iIDvR~~~----e~~~g---------hIpgAi~ip~~~~~~~~~~-~~~~-~~~~~~~~- 133 (187)
....|+++++.++++++ .+|||||+++ ||..| |||||+|+|+.. . ..+. .... +.+.+...
T Consensus 34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~-~-~~l~~~~~~~~~~~l~~~~ 111 (162)
T TIGR03865 34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTG-Y-GNLAPAWQAYFRRGLERAT 111 (162)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccC-C-CCCCCchhHHHHHHHHHhc
Confidence 34579999999999765 8899999876 45444 999999999631 1 0111 1111 22222221
Q ss_pred -CCCCCcEE-EcCCCh-hHHHHHHHHHHCCCCee-EecCcHhhhhhCCCce
Q 029837 134 -FRKHDEII-GCQSGK-RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLL 180 (187)
Q Consensus 134 -l~~~~~iv-~C~~g~-rs~~aa~~L~~~G~~~v-~l~GG~~~W~~~g~p~ 180 (187)
.+++++|| ||++|. +|..+++.|+.+||++| +|.||+.+|..+|+|+
T Consensus 112 ~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 112 GGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 36889999 999985 89999999999999999 7899999999999985
No 6
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.90 E-value=5.1e-23 Score=143.16 Aligned_cols=100 Identities=23% Similarity=0.273 Sum_probs=88.0
Q ss_pred CcccCHHHHHHHHHC-CCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhH
Q 029837 72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS 149 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~-~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs 149 (187)
...++++++.+++++ +.+|||+|+++||..||||||+|+|+. .+......++++++|+ ||.+|.+|
T Consensus 4 ~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~------------~l~~~~~~~~~~~~ivv~c~~g~~s 71 (108)
T PRK00162 4 FECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTND------------SLGAFMRQADFDTPVMVMCYHGNSS 71 (108)
T ss_pred ccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHH------------HHHHHHHhcCCCCCEEEEeCCCCCH
Confidence 456899999999865 489999999999999999999999984 4445555678899999 99999999
Q ss_pred HHHHHHHHHCCCCee-EecCcHhhhhhCCCceecc
Q 029837 150 MMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEE 183 (187)
Q Consensus 150 ~~aa~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~ 183 (187)
..++..|+..||+++ ++.||+.+|...++|++..
T Consensus 72 ~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 72 QGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred HHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 999999999999998 7899999999999998763
No 7
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.88 E-value=6.2e-23 Score=141.04 Aligned_cols=96 Identities=22% Similarity=0.218 Sum_probs=76.7
Q ss_pred ccCHHHHHHHHHCC-CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhHHH
Q 029837 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMM 151 (187)
Q Consensus 74 ~v~~~~~~~~l~~~-~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs~~ 151 (187)
.+++.++.++++.+ .+|||||+++||..||||||+|||+.... .....+... ..++++++|| ||++|.||..
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~-----~~~~~~~~~-~~~~~~~~ivvyC~~G~rs~~ 76 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFR-----EFPFWLDEN-LDLLKGKKVLMYCTGGIRCEK 76 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHh-----HhHHHHHhh-hhhcCCCEEEEECCCchhHHH
Confidence 57899999988754 78999999999999999999999985210 001112211 1246888999 9999999999
Q ss_pred HHHHHHHCCCCee-EecCcHhhhhh
Q 029837 152 AATDLLNAVSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 152 aa~~L~~~G~~~v-~l~GG~~~W~~ 175 (187)
++..|+.+||++| ++.||+.+|.+
T Consensus 77 a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 77 ASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred HHHHHHHhCCcceeeechhHHHHhC
Confidence 9999999999988 78999999963
No 8
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.88 E-value=3.1e-22 Score=137.29 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=76.6
Q ss_pred cCHHHHHHHHHCC--CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhHHH
Q 029837 75 VPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMM 151 (187)
Q Consensus 75 v~~~~~~~~l~~~--~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs~~ 151 (187)
++++++.++++++ .+|||||+++||..||||||+|+|+...... . ..........++++++|| ||.+|.||..
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~-~---~~~~~~~~~~~~~~~~ivv~C~~G~rs~~ 76 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFD-F---LEIEEDILDQLPDDQEVTVICAKEGSSQF 76 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHH-H---HHhhHHHHhhCCCCCeEEEEcCCCCcHHH
Confidence 5788999988764 7899999999999999999999998521100 0 000123345678899999 9999999999
Q ss_pred HHHHHHHCCCCee-EecCcHhhhh
Q 029837 152 AATDLLNAVSTHA-NYPSKPLTWF 174 (187)
Q Consensus 152 aa~~L~~~G~~~v-~l~GG~~~W~ 174 (187)
++..|+..||+ + ++.||+.+|.
T Consensus 77 aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 77 VAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHHHHHHcCce-eEEeCCcHHhhc
Confidence 99999999999 6 7999999996
No 9
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.87 E-value=1e-21 Score=132.26 Aligned_cols=87 Identities=32% Similarity=0.413 Sum_probs=76.8
Q ss_pred cCHHHHHHHHHCCCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhHHHHH
Q 029837 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAA 153 (187)
Q Consensus 75 v~~~~~~~~l~~~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs~~aa 153 (187)
++++++.+++.++.++||+|++++|..||||||+|+|.. .+......++++++|| ||.+|.++..++
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~~------------~~~~~~~~~~~~~~vvl~c~~g~~a~~~a 68 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLD------------ELRDRLNELPKDKEIIVYCAVGLRGYIAA 68 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCHH------------HHHHHHHhcCCCCcEEEEcCCChhHHHHH
Confidence 468889999877789999999999999999999999984 3444445578889999 999999999999
Q ss_pred HHHHHCCCCee-EecCcHhhhh
Q 029837 154 TDLLNAVSTHA-NYPSKPLTWF 174 (187)
Q Consensus 154 ~~L~~~G~~~v-~l~GG~~~W~ 174 (187)
..|+..|| ++ ++.||+.+|.
T Consensus 69 ~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 69 RILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHHHHCCC-CEEEecCCHHHhc
Confidence 99999999 77 7999999996
No 10
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.87 E-value=1.4e-21 Score=136.35 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=82.4
Q ss_pred CcccCHHHHHHHHHCC---CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCC-
Q 029837 72 PTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSG- 146 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~---~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g- 146 (187)
...++++++.++++.+ .+|||||++.||..||||||+|+|.. .+.......++++++|| ||.+|
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~-----------~l~~~~~~~i~~~~~vvvyc~~g~ 75 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHR-----------EICENATAKLDKEKLFVVYCDGPG 75 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHH-----------HhhhHhhhcCCCCCeEEEEECCCC
Confidence 3468999999999753 78999999999999999999999985 22223345578899999 99987
Q ss_pred -hhHHHHHHHHHHCCCCee-EecCcHhhhhhCCCce
Q 029837 147 -KRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLL 180 (187)
Q Consensus 147 -~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~~g~p~ 180 (187)
.+|..+++.|+.+||+ + ++.||+.+|..+|+|+
T Consensus 76 ~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 76 CNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred CchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 4899999999999996 6 7899999999999875
No 11
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.86 E-value=1.4e-21 Score=132.86 Aligned_cols=88 Identities=24% Similarity=0.239 Sum_probs=72.2
Q ss_pred cCHHHHHHHHHCC---CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcC-CCCCcEE-EcCCChhH
Q 029837 75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEII-GCQSGKRS 149 (187)
Q Consensus 75 v~~~~~~~~l~~~---~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~iv-~C~~g~rs 149 (187)
|++.++.+++..+ +++||||+++||..||||||+|+|+. ++........ .++++|| ||.+|.||
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~-----------~l~~~~~~~~~~~~~~iv~~c~~G~rs 69 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGG-----------QLVQETDHFAPVRGARIVLADDDGVRA 69 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHH-----------HHHHHHHHhcccCCCeEEEECCCCChH
Confidence 5788889988753 67999999999999999999999984 2322222122 2467899 99999999
Q ss_pred HHHHHHHHHCCCCee-EecCcHhhhh
Q 029837 150 MMAATDLLNAVSTHA-NYPSKPLTWF 174 (187)
Q Consensus 150 ~~aa~~L~~~G~~~v-~l~GG~~~W~ 174 (187)
..++..|+.+||+ + ++.||+.+|.
T Consensus 70 ~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 70 DMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred HHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 9999999999999 8 7899999996
No 12
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.86 E-value=1.3e-21 Score=135.29 Aligned_cols=98 Identities=29% Similarity=0.388 Sum_probs=77.4
Q ss_pred CHHHHHHHHH-C-CCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhc--CCCCCcEE-EcCCChhHH
Q 029837 76 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSM 150 (187)
Q Consensus 76 ~~~~~~~~l~-~-~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~iv-~C~~g~rs~ 150 (187)
+++++.++++ . +.+|||+|++.||..||||||+|+|+.. +.......++.+...... ++++++|| ||++|.+|.
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~ 80 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSS-LPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSK 80 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHH-hhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHH
Confidence 5678888886 4 4899999999999999999999999864 222222233334444332 45788999 999999999
Q ss_pred HHHHHHHHCCCCee-EecCcHhhhh
Q 029837 151 MAATDLLNAVSTHA-NYPSKPLTWF 174 (187)
Q Consensus 151 ~aa~~L~~~G~~~v-~l~GG~~~W~ 174 (187)
.+++.|..+||++| .|.||+.+|.
T Consensus 81 ~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 81 AAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred HHHHHHHHcCCccceecCCcHHHHc
Confidence 99999999999998 6889999996
No 13
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.86 E-value=2.1e-21 Score=139.04 Aligned_cols=100 Identities=24% Similarity=0.303 Sum_probs=77.4
Q ss_pred cCHHHHHHHHHCCCEEEecCChhhhccccCCCcEEeCcccccCCCC----------------------CCCHHHHHHHh-
Q 029837 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGM----------------------TKNLKFVEEVS- 131 (187)
Q Consensus 75 v~~~~~~~~l~~~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~----------------------~~~~~~~~~~~- 131 (187)
|+++++.++++++.+|||||+++||..||||||+|||+........ ...+++++...
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE 80 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5788999999877899999999999999999999999853211000 00112222222
Q ss_pred hcCCCCCcEE-EcC-CChhHHHHHHHHHHCCCCee-EecCcHhhhhh
Q 029837 132 TRFRKHDEII-GCQ-SGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 132 ~~l~~~~~iv-~C~-~g~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~ 175 (187)
..++++++|| ||. +|.||.++++.|+.+||+ + .+.||+.+|+.
T Consensus 81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~-v~~L~GG~~aw~~ 126 (128)
T cd01520 81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGID-VPLLEGGYKAYRK 126 (128)
T ss_pred hccCCCCeEEEEeCCCCccHHHHHHHHHHcCCc-eeEeCCcHHHHHh
Confidence 2578899999 997 689999999999999995 6 78999999975
No 14
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.86 E-value=2.5e-21 Score=137.50 Aligned_cols=107 Identities=23% Similarity=0.239 Sum_probs=81.2
Q ss_pred CCcccCHHHHHHHHHC--CCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCCh
Q 029837 71 VPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGK 147 (187)
Q Consensus 71 ~~~~v~~~~~~~~l~~--~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~ 147 (187)
....++++++.+++.+ +.+|||||+++||..||||||+|||+.... ......+.. ......++++++|| ||++|.
T Consensus 6 ~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~-~~~~~~~~~-~~~~~~~~~~~~ivv~C~~G~ 83 (122)
T cd01526 6 PEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELL-SKAAELKSL-QELPLDNDKDSPIYVVCRRGN 83 (122)
T ss_pred cccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHh-hhhhhhhhh-hhcccccCCCCcEEEECCCCC
Confidence 4457899999999876 378999999999999999999999985211 000000000 00012247889999 999999
Q ss_pred hHHHHHHHHHHCCC-Cee-EecCcHhhhhhCCCc
Q 029837 148 RSMMAATDLLNAVS-THA-NYPSKPLTWFLSNQL 179 (187)
Q Consensus 148 rs~~aa~~L~~~G~-~~v-~l~GG~~~W~~~g~p 179 (187)
||..++..|+..|| +++ ++.||+.+|..+..+
T Consensus 84 rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 84 DSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred cHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 99999999999999 678 899999999887654
No 15
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.85 E-value=4.6e-21 Score=131.71 Aligned_cols=89 Identities=28% Similarity=0.391 Sum_probs=75.3
Q ss_pred cCHHHHHHHHHCC---CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcC---CCCCcEE-EcCCCh
Q 029837 75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---RKHDEII-GCQSGK 147 (187)
Q Consensus 75 v~~~~~~~~l~~~---~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l---~~~~~iv-~C~~g~ 147 (187)
++++++.+++..+ .+|||+|+++||..+|||||+|+|+. .+......+ +++++|| ||.+|.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~------------~~~~~~~~~~~~~~~~~vv~~c~~g~ 69 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMS------------EIPERSKELDSDNPDKDIVVLCHHGG 69 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHH------------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence 6788999988754 78999999999999999999999984 222222333 3588999 999999
Q ss_pred hHHHHHHHHHHCCCCee-EecCcHhhhhh
Q 029837 148 RSMMAATDLLNAVSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 148 rs~~aa~~L~~~G~~~v-~l~GG~~~W~~ 175 (187)
||..++..|...||+++ +|.||+.+|..
T Consensus 70 rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 70 RSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred hHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 99999999999999998 78999999975
No 16
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.85 E-value=5.7e-21 Score=129.72 Aligned_cols=88 Identities=26% Similarity=0.351 Sum_probs=78.0
Q ss_pred cCHHHHHHHHHC--CCEEEecCChhhhcc--ccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhH
Q 029837 75 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS 149 (187)
Q Consensus 75 v~~~~~~~~l~~--~~~iIDvR~~~e~~~--ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs 149 (187)
+++.++.+++++ +.+|||+|++.||.. ||||||+|+|+. .+......++++++|| ||.+|.+|
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~ivv~c~~g~~s 69 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDED------------SLDDWLGDLDRDRPVVVYCYHGNSS 69 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHH------------HHHHHHhhcCCCCCEEEEeCCCChH
Confidence 678889888876 389999999999999 999999999994 4445555688999999 99999999
Q ss_pred HHHHHHHHHCCCCee-EecCcHhhhh
Q 029837 150 MMAATDLLNAVSTHA-NYPSKPLTWF 174 (187)
Q Consensus 150 ~~aa~~L~~~G~~~v-~l~GG~~~W~ 174 (187)
..+++.|+..||++| ++.||+.+|.
T Consensus 70 ~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 70 AQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred HHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 999999999999998 7889999996
No 17
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.85 E-value=5e-21 Score=131.55 Aligned_cols=99 Identities=23% Similarity=0.283 Sum_probs=75.3
Q ss_pred cCHHHHHHHHHC-CCEEEecCChhhh-ccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhHHH
Q 029837 75 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMM 151 (187)
Q Consensus 75 v~~~~~~~~l~~-~~~iIDvR~~~e~-~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs~~ 151 (187)
++++++.+++++ +.+|||+|++.+| ..||||||+|+|+.. +........ .+ ....++++++|| ||.+|.+|..
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~-~~~~~~~~~-~~--~~~~~~~~~~ivv~c~~g~~s~~ 76 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGM-LEFWADPDS-PY--HKPAFAEDKPFVFYCASGWRSAL 76 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccch-hhhhcCccc-cc--cccCCCCCCeEEEEcCCCCcHHH
Confidence 467888888874 4899999999998 579999999999842 100000000 00 011267889999 9999999999
Q ss_pred HHHHHHHCCCCee-EecCcHhhhhhCC
Q 029837 152 AATDLLNAVSTHA-NYPSKPLTWFLSN 177 (187)
Q Consensus 152 aa~~L~~~G~~~v-~l~GG~~~W~~~g 177 (187)
+++.|...||++| +|.||+.+|..+|
T Consensus 77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 77 AGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 9999999999988 7899999998765
No 18
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.85 E-value=6.2e-21 Score=139.36 Aligned_cols=92 Identities=16% Similarity=0.223 Sum_probs=80.0
Q ss_pred HHHHHHCC--CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhHHHHHHHH
Q 029837 80 AHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDL 156 (187)
Q Consensus 80 ~~~~l~~~--~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L 156 (187)
+.+++..+ .+|||||++.+|..||||||+|+|. ..+......++++++|| ||.+|.+|..+++.|
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~------------~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L 69 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLR------------AQLAQALEKLPAAERYVLTCGSSLLARFAAADL 69 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCH------------HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHH
Confidence 34556544 6999999999999999999999998 35666666677888999 999999999999999
Q ss_pred HHCCCCee-EecCcHhhhhhCCCceecc
Q 029837 157 LNAVSTHA-NYPSKPLTWFLSNQLLTEE 183 (187)
Q Consensus 157 ~~~G~~~v-~l~GG~~~W~~~g~p~~~~ 183 (187)
+..||++| +|.||+.+|...|+|++.+
T Consensus 70 ~~~G~~~v~~L~GG~~aW~~~g~pl~~~ 97 (145)
T cd01535 70 AALTVKPVFVLEGGTAAWIAAGLPVESG 97 (145)
T ss_pred HHcCCcCeEEecCcHHHHHHCCCCcccC
Confidence 99999988 7899999999999999875
No 19
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.85 E-value=7e-21 Score=134.33 Aligned_cols=100 Identities=27% Similarity=0.288 Sum_probs=80.9
Q ss_pred cCHHHHHHHHHC--CCEEEecCChhhhc-cccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhHH
Q 029837 75 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSM 150 (187)
Q Consensus 75 v~~~~~~~~l~~--~~~iIDvR~~~e~~-~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs~ 150 (187)
++++++.+++++ +.+|||||+++||+ .||||||+|+|+.+.... .....+...+...++++++|| ||.+|.+|.
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~ 78 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI 78 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence 578899999976 48899999999999 999999999998633211 112344555444457889999 999999999
Q ss_pred HHHHHHHHCCCCee-EecCcHhhhhhC
Q 029837 151 MAATDLLNAVSTHA-NYPSKPLTWFLS 176 (187)
Q Consensus 151 ~aa~~L~~~G~~~v-~l~GG~~~W~~~ 176 (187)
.+++.|+..||+++ .+.||+.+|.+.
T Consensus 79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 79 AAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred HHHHHHHHCCCCeEEECcCceecCCCC
Confidence 99999999999998 699999999763
No 20
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.84 E-value=1.5e-20 Score=133.36 Aligned_cols=103 Identities=18% Similarity=0.119 Sum_probs=84.3
Q ss_pred cCHHHHHHHHHC-CCEEEecCCh-------hhhccccCCCcEEeCcccccC-----CCCCCCHHHHHHHhhc--CCCCCc
Q 029837 75 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDE 139 (187)
Q Consensus 75 v~~~~~~~~l~~-~~~iIDvR~~-------~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--l~~~~~ 139 (187)
++++++.+++.. +.+|||+|++ ++|..||||||+|+|+.+... .+...+.+.+.+.... ++++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT 81 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence 678899998876 4889999999 999999999999999865432 2344455555555443 678899
Q ss_pred EE-EcCC-ChhHHHHHHHHHHCCCCee-EecCcHhhhhhCC
Q 029837 140 II-GCQS-GKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSN 177 (187)
Q Consensus 140 iv-~C~~-g~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~~g 177 (187)
|| ||++ |.+|..+++.|+.+||++| +|.||+.+|..+|
T Consensus 82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 99 9999 5899999999999999999 7899999998765
No 21
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.84 E-value=1.3e-20 Score=132.72 Aligned_cols=101 Identities=23% Similarity=0.337 Sum_probs=81.8
Q ss_pred cCHHHHHHHHHCC-CEEEecCChhhhcc-----------ccCCCcEEeCcccccCC-CCCCCHHHHHHHhhc--CCCCCc
Q 029837 75 VPVRVAHELLQAG-HRYLDVRTPEEFSA-----------GHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDE 139 (187)
Q Consensus 75 v~~~~~~~~l~~~-~~iIDvR~~~e~~~-----------ghIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~~--l~~~~~ 139 (187)
++++++.++++++ .+|||+|++.||.. ||||||+|+|+...... +.+.+.+.+...... ++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 4678888888654 89999999999987 99999999998654322 233445556555544 568889
Q ss_pred EE-EcCCChhHHHHHHHHHHCCCCee-EecCcHhhhhh
Q 029837 140 II-GCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 140 iv-~C~~g~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~ 175 (187)
|| ||++|.+|.++++.|+.+||+++ .|.||+.+|..
T Consensus 81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 99 99999999999999999999988 78999999963
No 22
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.84 E-value=1.1e-20 Score=130.39 Aligned_cols=97 Identities=20% Similarity=0.209 Sum_probs=73.8
Q ss_pred cCHHHHHHHHHC---CCEEEecCChhhhccccCCCcEEeCcccccCC--CCCCCHHHHHHHhhcCCCCCcEE-EcCCChh
Q 029837 75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS--GMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (187)
Q Consensus 75 v~~~~~~~~l~~---~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~--~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~r 148 (187)
|+++++++++++ +++|||||++.||..||||||+|+|+...+.. .....+ ....+.. .++++|| ||.+|.+
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~-~~~~~~~--~~~~~vv~~c~~g~~ 77 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLP-TVPRLEN--YKGKIIVIVSHSHKH 77 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccccccccc-chHHHHh--hcCCeEEEEeCCCcc
Confidence 578899999975 37899999999999999999999998632211 100000 0111111 1467899 9999999
Q ss_pred HHHHHHHHHHCCCCee-EecCcHhhhh
Q 029837 149 SMMAATDLLNAVSTHA-NYPSKPLTWF 174 (187)
Q Consensus 149 s~~aa~~L~~~G~~~v-~l~GG~~~W~ 174 (187)
|..+++.|+.+||++| +|.||+.+|+
T Consensus 78 s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 78 AALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 9999999999999998 6889999995
No 23
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.83 E-value=2.2e-20 Score=132.50 Aligned_cols=90 Identities=27% Similarity=0.338 Sum_probs=74.9
Q ss_pred ccCHHHHHHHHHC-------CCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHh-h-----cCCCCCcE
Q 029837 74 SVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-T-----RFRKHDEI 140 (187)
Q Consensus 74 ~v~~~~~~~~l~~-------~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~-~-----~l~~~~~i 140 (187)
.|++.++.+++.. +++|||||+++||..||||||+|||.. +.+.... . .++++++|
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~~l~~~~~~~~~~~~~~~~~~v 71 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTK-----------DELEEFFLDKPGVASKKKRRVL 71 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcH-----------HHHHHHHHHhhcccccCCCCEE
Confidence 5899999999865 378999999999999999999999984 1222221 1 26788999
Q ss_pred E-EcC-CChhHHHHHHHHHHC------------CCCee-EecCcHhhhh
Q 029837 141 I-GCQ-SGKRSMMAATDLLNA------------VSTHA-NYPSKPLTWF 174 (187)
Q Consensus 141 v-~C~-~g~rs~~aa~~L~~~------------G~~~v-~l~GG~~~W~ 174 (187)
| ||. +|.||..+++.|+.. ||.+| +|.||+.+|.
T Consensus 72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 9 997 899999999999985 99999 7889999984
No 24
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.83 E-value=2.8e-20 Score=155.43 Aligned_cols=102 Identities=26% Similarity=0.314 Sum_probs=88.5
Q ss_pred CcccCHHHHHHHHHCCCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhc--CCCCCcEE-EcCCChh
Q 029837 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKR 148 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~iv-~C~~g~r 148 (187)
...++++++.++++++.+|||||+++||..||||||+|+|+. .+...... .+++++|| ||++|.|
T Consensus 2 v~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~IvvyC~~G~r 69 (376)
T PRK08762 2 IREISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRG------------FLELRIETHLPDRDREIVLICASGTR 69 (376)
T ss_pred CceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHH------------HHHHHHhhhcCCCCCeEEEEcCCCcH
Confidence 346899999999988899999999999999999999999984 34433333 36789999 9999999
Q ss_pred HHHHHHHHHHCCCCee-EecCcHhhhhhCCCceecccc
Q 029837 149 SMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL 185 (187)
Q Consensus 149 s~~aa~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~ 185 (187)
|..+++.|+..||++| +|.||+.+|..+|+|++....
T Consensus 70 s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 107 (376)
T PRK08762 70 SAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRL 107 (376)
T ss_pred HHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccC
Confidence 9999999999999998 789999999999999987643
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.83 E-value=4.4e-20 Score=125.08 Aligned_cols=94 Identities=27% Similarity=0.359 Sum_probs=72.4
Q ss_pred CCCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCH-HHHHHH-hhcCCCCCcEE-EcCCChhHHHHHHHHHHCCCC
Q 029837 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNL-KFVEEV-STRFRKHDEII-GCQSGKRSMMAATDLLNAVST 162 (187)
Q Consensus 86 ~~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~-~~~~~~-~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~G~~ 162 (187)
++.+|||+|++.||..+|||||+|+|............. .+.... ...++++++|| ||.+|.++..+++.|+.+||+
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 347899999999999999999999998643322111111 111111 22367888999 999999999999999999999
Q ss_pred ee-EecCcHhhhhhCCCc
Q 029837 163 HA-NYPSKPLTWFLSNQL 179 (187)
Q Consensus 163 ~v-~l~GG~~~W~~~g~p 179 (187)
+| +|.||+.+|...+.|
T Consensus 83 ~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 83 NVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred ceEEecCCHHHHHhcCCC
Confidence 98 788999999998865
No 26
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.83 E-value=3.4e-20 Score=126.21 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=67.7
Q ss_pred CCCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHCCCCee
Q 029837 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAVSTHA 164 (187)
Q Consensus 86 ~~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~G~~~v 164 (187)
++.+|||||+++||..||||||+|+|+.+. ....+.++. ....+++++|| ||.+|.+|..+++.|+..||++|
T Consensus 11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~-----~~~~~~~~~-~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v 84 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLPGKRSIPGAAL-----VLRSQELQA-LEAPGRATRYVLTCDGSLLARFAAQELLALGGKPV 84 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCCCcEeCCHHHh-----cCCHHHHHH-hhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCE
Confidence 458999999999999999999999997521 122233333 33357888999 99999999999999999999998
Q ss_pred -EecCcHhhhh
Q 029837 165 -NYPSKPLTWF 174 (187)
Q Consensus 165 -~l~GG~~~W~ 174 (187)
++.||+.+|.
T Consensus 85 ~~l~GG~~~W~ 95 (96)
T cd01529 85 ALLDGGTSAWV 95 (96)
T ss_pred EEeCCCHHHhc
Confidence 7899999996
No 27
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.81 E-value=1e-19 Score=126.52 Aligned_cols=100 Identities=26% Similarity=0.363 Sum_probs=76.6
Q ss_pred CHHHHHHHHH-CCCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHH----HHHHhhcCCCCCcEE-EcCCChhH
Q 029837 76 PVRVAHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF----VEEVSTRFRKHDEII-GCQSGKRS 149 (187)
Q Consensus 76 ~~~~~~~~l~-~~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~----~~~~~~~l~~~~~iv-~C~~g~rs 149 (187)
|++++++++. .+.+|||+|++.+|..||||||+|+|+............+. +......++++++|| ||.+|.++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~ 80 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS 80 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence 5789999993 34999999999999999999999999954322222222222 233333467888999 99989888
Q ss_pred HHHHHH-----HHHCCCCee-EecCcHhhhhh
Q 029837 150 MMAATD-----LLNAVSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 150 ~~aa~~-----L~~~G~~~v-~l~GG~~~W~~ 175 (187)
..++.. |..+||++| .|.||+.+|.+
T Consensus 81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred chhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 887776 888999999 78999999986
No 28
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.81 E-value=9.2e-20 Score=146.85 Aligned_cols=110 Identities=21% Similarity=0.266 Sum_probs=89.4
Q ss_pred cCHHHHHHHHHC-CCEEEecCChhhhc-----------cccCCCcEEeCcccccCCCCCCCHHHHHHHhhc--CCCCCcE
Q 029837 75 VPVRVAHELLQA-GHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEI 140 (187)
Q Consensus 75 v~~~~~~~~l~~-~~~iIDvR~~~e~~-----------~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~i 140 (187)
++.+++...++. +.+|||+|+++||. .||||||+|+|+.+.+..+.+..++.++..+.. ++++++|
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~i 234 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPI 234 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCE
Confidence 455555555554 38899999999995 699999999998765554455566666665544 7788999
Q ss_pred E-EcCCChhHHHHHHHHHHCCCCee-EecCcHhhhhh-CCCceeccc
Q 029837 141 I-GCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL-SNQLLTEEK 184 (187)
Q Consensus 141 v-~C~~g~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~-~g~p~~~~~ 184 (187)
| ||++|.||..++..|+.+||+++ .|+|||.+|.. .++|+++++
T Consensus 235 i~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~~ 281 (281)
T PRK11493 235 IASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPAK 281 (281)
T ss_pred EEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCCC
Confidence 9 99999999999999999999998 79999999997 799998753
No 29
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.81 E-value=1.7e-19 Score=145.22 Aligned_cols=112 Identities=15% Similarity=0.071 Sum_probs=91.1
Q ss_pred cccCHHHHHHHHHCC-CEEEecCC----------hhhhccccCCCcEEeCcccccCC-----CCCCCHHHHHHHhhc--C
Q 029837 73 TSVPVRVAHELLQAG-HRYLDVRT----------PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--F 134 (187)
Q Consensus 73 ~~v~~~~~~~~l~~~-~~iIDvR~----------~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~--l 134 (187)
..++++++.++++++ ++|||+|+ +++|..||||||+|+|+...... .+...++.+++.... +
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 358999999999764 89999996 78899999999999997542221 233455666666655 6
Q ss_pred CCCCcEE-EcCCChh-HHHHHHHHHHCCCCee-EecCcHhhhhhCCCceeccc
Q 029837 135 RKHDEII-GCQSGKR-SMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK 184 (187)
Q Consensus 135 ~~~~~iv-~C~~g~r-s~~aa~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~ 184 (187)
+++++|| ||.++.+ +.++++.|..+||++| +|+||+.+|..+|+|+++..
T Consensus 85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 137 (281)
T PRK11493 85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGA 137 (281)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCC
Confidence 7899999 9998764 7788999999999998 78999999999999998764
No 30
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.81 E-value=1.1e-19 Score=122.90 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=64.5
Q ss_pred CCCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCC-CCCcEE-EcCCChh--HHHHHHHHHHCCC
Q 029837 86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDEII-GCQSGKR--SMMAATDLLNAVS 161 (187)
Q Consensus 86 ~~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~-~~~~iv-~C~~g~r--s~~aa~~L~~~G~ 161 (187)
++.+|||+|+++||..+|||||+|+|.. .+.......++ ++++|| ||.+|.+ |..+++.|+..||
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~-----------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G~ 77 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLS-----------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELGY 77 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHH-----------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCc
Confidence 3489999999999999999999999984 22212222233 588999 9999877 6899999999999
Q ss_pred Cee-EecCcHhhhhh
Q 029837 162 THA-NYPSKPLTWFL 175 (187)
Q Consensus 162 ~~v-~l~GG~~~W~~ 175 (187)
++| ++.||+.+|..
T Consensus 78 ~~v~~l~GG~~~W~~ 92 (92)
T cd01532 78 TDVALLEGGLQGWRA 92 (92)
T ss_pred cCEEEccCCHHHHcC
Confidence 998 78999999963
No 31
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.80 E-value=2.6e-19 Score=122.98 Aligned_cols=78 Identities=31% Similarity=0.452 Sum_probs=65.9
Q ss_pred CCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhc--CCCCCcEE-EcCCChhHHHHHHHHHHCCCCe
Q 029837 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSMMAATDLLNAVSTH 163 (187)
Q Consensus 87 ~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~iv-~C~~g~rs~~aa~~L~~~G~~~ 163 (187)
...+||+|+++||..||||||+|||+. .+...... .+++++|| ||++|.+|..++..|+.+||++
T Consensus 18 ~~~lIDvR~~~ef~~ghIpgAinip~~------------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~~ 85 (101)
T TIGR02981 18 AEHWIDVRIPEQYQQEHIQGAINIPLK------------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYTH 85 (101)
T ss_pred CCEEEECCCHHHHhcCCCCCCEECCHH------------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCCe
Confidence 478999999999999999999999995 33333332 34677898 9999999999999999999999
Q ss_pred eEecCcHhhhhhC
Q 029837 164 ANYPSKPLTWFLS 176 (187)
Q Consensus 164 v~l~GG~~~W~~~ 176 (187)
++..||+.+|...
T Consensus 86 v~~~GG~~~~~~~ 98 (101)
T TIGR02981 86 AENAGGIKDIAMP 98 (101)
T ss_pred EEecCCHHHhhhh
Confidence 9667999999764
No 32
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.80 E-value=2.6e-19 Score=123.48 Aligned_cols=77 Identities=30% Similarity=0.417 Sum_probs=65.4
Q ss_pred CCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcC--CCCCcEE-EcCCChhHHHHHHHHHHCCCCe
Q 029837 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII-GCQSGKRSMMAATDLLNAVSTH 163 (187)
Q Consensus 87 ~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~iv-~C~~g~rs~~aa~~L~~~G~~~ 163 (187)
+-++||+|+++||..+|||||+|+|+. .+......+ +++++|| ||++|.+|..++..|.++||++
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~------------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~ 87 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH 87 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHH------------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence 368999999999999999999999984 333333333 4567899 9999999999999999999999
Q ss_pred eEecCcHhhhhh
Q 029837 164 ANYPSKPLTWFL 175 (187)
Q Consensus 164 v~l~GG~~~W~~ 175 (187)
+++.||+.+|..
T Consensus 88 v~~~GG~~~~~~ 99 (104)
T PRK10287 88 AENAGGLKDIAM 99 (104)
T ss_pred EEecCCHHHHhh
Confidence 977899999975
No 33
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.80 E-value=4e-19 Score=155.84 Aligned_cols=112 Identities=15% Similarity=0.046 Sum_probs=92.8
Q ss_pred cccCHHHHHHHHHCC-CEEEecCChhhhccccCCCcEEeCcccccC-----CCCCCCHHHHHHHhhc--CCCCCcEE-Ec
Q 029837 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDEII-GC 143 (187)
Q Consensus 73 ~~v~~~~~~~~l~~~-~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--l~~~~~iv-~C 143 (187)
..|+++++.++++++ ++|||+|++++|..||||||+|+++..... .+++...+.++..+.. ++++++|| ||
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd 88 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD 88 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence 468999999999764 899999999999999999999999753211 2344555566666555 67899999 99
Q ss_pred CCC-hhHHHHHHHHHHCCCCee-EecCcHhhhhhCCCceeccc
Q 029837 144 QSG-KRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK 184 (187)
Q Consensus 144 ~~g-~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~ 184 (187)
++| .+|.++++.|+.+||++| .|+||+.+|..+|+|++++.
T Consensus 89 ~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~ 131 (610)
T PRK09629 89 DEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDV 131 (610)
T ss_pred CCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCC
Confidence 986 578899999999999999 78999999999999988764
No 34
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.79 E-value=7.5e-19 Score=127.36 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=80.4
Q ss_pred cCHHHHHHHHH-----CCCEEEecCCh--------hhhcc------------ccCCCcEEeCcccccCC-----CCCCCH
Q 029837 75 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMYRVGS-----GMTKNL 124 (187)
Q Consensus 75 v~~~~~~~~l~-----~~~~iIDvR~~--------~e~~~------------ghIpgAi~ip~~~~~~~-----~~~~~~ 124 (187)
++++++.+.++ .+++|||+|.. ++|.. ||||||+|+|+.+.... ......
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 57888888887 34899999987 89998 99999999998643221 223344
Q ss_pred HHHHHHhhc--CCCCCcEE-EcCC---ChhHHHHHHHHHHCCCCee-EecCcHhhhh
Q 029837 125 KFVEEVSTR--FRKHDEII-GCQS---GKRSMMAATDLLNAVSTHA-NYPSKPLTWF 174 (187)
Q Consensus 125 ~~~~~~~~~--l~~~~~iv-~C~~---g~rs~~aa~~L~~~G~~~v-~l~GG~~~W~ 174 (187)
+.+++.+.. ++++++|| ||.+ |.+|.++++.|+.+||++| .|+||+.+|+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 556666544 77899999 9986 7889999999999999999 7899999996
No 35
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.4e-19 Score=123.63 Aligned_cols=85 Identities=34% Similarity=0.435 Sum_probs=74.2
Q ss_pred CCEEEecCChhhhccccCCC-cEEeCcccccCCCCCCCHHHHHHHhhc--CCCCCcEE-EcCCChhHHHHHHHHHHCCCC
Q 029837 87 GHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSMMAATDLLNAVST 162 (187)
Q Consensus 87 ~~~iIDvR~~~e~~~ghIpg-Ai~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~iv-~C~~g~rs~~aa~~L~~~G~~ 162 (187)
+.+|||||++.||+.+|||| ++|+|.. .+...... ++++++|| ||++|.||..++..|+.+||+
T Consensus 20 ~~~liDvR~~~e~~~~~i~~~~~~ip~~------------~~~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G~~ 87 (110)
T COG0607 20 DAVLLDVREPEEYERGHIPGAAINIPLS------------ELKAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAGFT 87 (110)
T ss_pred CCEEEeccChhHhhhcCCCcceeeeecc------------cchhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcCCc
Confidence 49999999999999999999 9999996 22222222 46899999 999999999999999999999
Q ss_pred ee-EecCcHhhhhhCCCceecc
Q 029837 163 HA-NYPSKPLTWFLSNQLLTEE 183 (187)
Q Consensus 163 ~v-~l~GG~~~W~~~g~p~~~~ 183 (187)
++ .+.||+.+|..+++|++..
T Consensus 88 ~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 88 NVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred cccccCCcHHHHHhcCCCcccC
Confidence 99 8999999999999998754
No 36
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.78 E-value=6.1e-19 Score=117.45 Aligned_cols=83 Identities=41% Similarity=0.599 Sum_probs=68.9
Q ss_pred HHHHH-CCCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHH-hhcCCCCCcEE-EcCCChhHHHHHHHHH
Q 029837 81 HELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV-STRFRKHDEII-GCQSGKRSMMAATDLL 157 (187)
Q Consensus 81 ~~~l~-~~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~-~~~l~~~~~iv-~C~~g~rs~~aa~~L~ 157 (187)
.++++ .+..|||+|++.||..+|||||+|+|+. ...... ....+++++|| ||.+|.++..+++.|+
T Consensus 3 ~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~-----------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~ 71 (89)
T cd00158 3 KELLDDEDAVLLDVREPEEYAAGHIPGAINIPLS-----------ELEERAALLELDKDKPIVVYCRSGNRSARAAKLLR 71 (89)
T ss_pred HHHhcCCCeEEEECCCHHHHhccccCCCEecchH-----------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHHHH
Confidence 34443 3589999999999999999999999995 222221 33467889999 9999999999999999
Q ss_pred HCCCCee-EecCcHhhhh
Q 029837 158 NAVSTHA-NYPSKPLTWF 174 (187)
Q Consensus 158 ~~G~~~v-~l~GG~~~W~ 174 (187)
.+||+++ +|.||+.+|.
T Consensus 72 ~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 72 KAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred HhCcccEEEecCChhhcC
Confidence 9999999 7899999994
No 37
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.78 E-value=7.6e-19 Score=143.85 Aligned_cols=109 Identities=16% Similarity=0.228 Sum_probs=90.1
Q ss_pred cCHHHHHHHHHC-CCEEEecCChhhh-----------ccccCCCcEEeCcccccC-CCCCCCHHHHHHHhhc--CCCCCc
Q 029837 75 VPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDE 139 (187)
Q Consensus 75 v~~~~~~~~l~~-~~~iIDvR~~~e~-----------~~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--l~~~~~ 139 (187)
++.+++.+.++. +.+|||+|+++|| ..||||||+|||+.+.+. .+.+...+.++..... ++++++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~ 271 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP 271 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence 678888888865 4789999999998 469999999999965443 2345666777776653 788999
Q ss_pred EE-EcCCChhHHHHHHHHHHCCCCee-EecCcHhhhhhC-CCceecc
Q 029837 140 II-GCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS-NQLLTEE 183 (187)
Q Consensus 140 iv-~C~~g~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~~-g~p~~~~ 183 (187)
|| ||++|.+|..++..|+.+||++| .|+|||.+|... ++|++++
T Consensus 272 iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 272 IVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATS 318 (320)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence 99 99999999999999999999999 799999999874 6898764
No 38
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.78 E-value=8.5e-19 Score=139.12 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=79.4
Q ss_pred CCCcccCHHHHHHHHHCC-------CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-
Q 029837 70 GVPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII- 141 (187)
Q Consensus 70 ~~~~~v~~~~~~~~l~~~-------~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv- 141 (187)
+....+++.++.++++.+ .+|||||++.||+.||||||+|+|..... ..+..+......+ ++++||
T Consensus 107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~-----~~~~~l~~~~~~~-kdk~Ivv 180 (257)
T PRK05320 107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFT-----EFPEALAAHRADL-AGKTVVS 180 (257)
T ss_pred CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhh-----hhHHHHHhhhhhc-CCCeEEE
Confidence 344678999999988652 68999999999999999999999995110 0111222222223 788999
Q ss_pred EcCCChhHHHHHHHHHHCCCCee-EecCcHhhhhhC
Q 029837 142 GCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS 176 (187)
Q Consensus 142 ~C~~g~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~~ 176 (187)
||.+|.|+..++..|+..||++| ++.||+.+|.+.
T Consensus 181 yC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 181 FCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred ECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 99999999999999999999988 789999999763
No 39
>PRK01415 hypothetical protein; Validated
Probab=99.78 E-value=8e-19 Score=137.73 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=80.7
Q ss_pred CcccCHHHHHHHHHCC-CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhH
Q 029837 72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS 149 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~-~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs 149 (187)
...|++.++.++++++ .+|||||++.||..||||||+|+|... + ...++.+.. ...++++++|+ ||.+|.||
T Consensus 111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~-f----~e~~~~~~~-~~~~~k~k~Iv~yCtgGiRs 184 (247)
T PRK01415 111 GEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKT-F----KQFPAWVQQ-NQELLKGKKIAMVCTGGIRC 184 (247)
T ss_pred ccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHH-H----hhhHHHHhh-hhhhcCCCeEEEECCCChHH
Confidence 4579999999999754 899999999999999999999999741 0 001111111 12367889999 99999999
Q ss_pred HHHHHHHHHCCCCee-EecCcHhhhhhCC
Q 029837 150 MMAATDLLNAVSTHA-NYPSKPLTWFLSN 177 (187)
Q Consensus 150 ~~aa~~L~~~G~~~v-~l~GG~~~W~~~g 177 (187)
..++..|+++||++| .|.||+.+|....
T Consensus 185 ~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 185 EKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred HHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 999999999999999 6999999998743
No 40
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.78 E-value=1.2e-18 Score=142.76 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=89.4
Q ss_pred cccCHHHHHHHHHC-CCEEEecC--------C-hhhhccccCCCcEEeCcccccCC-----CCCCCHHHHHHHhhc--CC
Q 029837 73 TSVPVRVAHELLQA-GHRYLDVR--------T-PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--FR 135 (187)
Q Consensus 73 ~~v~~~~~~~~l~~-~~~iIDvR--------~-~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~~--l~ 135 (187)
..|+++++.+++++ +.+|||+| + .++|..||||||+|+++.+.... .++..++.+++.+.. +.
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi~ 101 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGIE 101 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCCC
Confidence 46899999999975 48899996 3 37899999999999997542221 234455666666666 56
Q ss_pred CCCcEE-EcCCChh-HHHHHHHHHHCCCCee-EecCcHhhhhhCCCceecc
Q 029837 136 KHDEII-GCQSGKR-SMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEE 183 (187)
Q Consensus 136 ~~~~iv-~C~~g~r-s~~aa~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~ 183 (187)
++++|| ||.+|.+ +.++++.|+.+||++| .|+||+.+|..+|+|++++
T Consensus 102 ~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~ 152 (320)
T PLN02723 102 NKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESS 152 (320)
T ss_pred CCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccC
Confidence 888999 9998755 6789999999999999 7889999999999999875
No 41
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.77 E-value=1.7e-18 Score=121.35 Aligned_cols=95 Identities=19% Similarity=0.273 Sum_probs=72.8
Q ss_pred cccCHHHHHHHHHCC---CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhc--CCCCCcEE-EcC-C
Q 029837 73 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQ-S 145 (187)
Q Consensus 73 ~~v~~~~~~~~l~~~---~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~iv-~C~-~ 145 (187)
..++++++.+++..+ .+|||||++ ||..||||||+|+|+.... ..+...... .+++++|| ||. +
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~--------~~~~~~~~~~~~~~~~~iv~yC~~~ 72 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK--------AQLNQLVQLLSGSKKDTVVFHCALS 72 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh--------hCHHHHHHHHhcCCCCeEEEEeecC
Confidence 357899999998763 689999999 9999999999999985210 112222222 25678899 998 6
Q ss_pred ChhHHHHHHHHHH--------CCCCee-EecCcHhhhhhC
Q 029837 146 GKRSMMAATDLLN--------AVSTHA-NYPSKPLTWFLS 176 (187)
Q Consensus 146 g~rs~~aa~~L~~--------~G~~~v-~l~GG~~~W~~~ 176 (187)
|.|+..++..|.+ .||.+| .+.||+.+|...
T Consensus 73 ~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 73 QVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred CcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 7889999887754 499998 789999999863
No 42
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.3e-18 Score=136.62 Aligned_cols=111 Identities=23% Similarity=0.374 Sum_probs=93.0
Q ss_pred ccCHHHHHHHHHCC-CEEEecCChhhhcc----------ccCCCcEEeCcccccCC-CCCCCHHHHHHHhhc--CCCCCc
Q 029837 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSA----------GHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDE 139 (187)
Q Consensus 74 ~v~~~~~~~~l~~~-~~iIDvR~~~e~~~----------ghIpgAi~ip~~~~~~~-~~~~~~~~~~~~~~~--l~~~~~ 139 (187)
.++..+....++.. .+|||+|++++|.. ||||||+|+|+.+.+.. .++..++.++.+... ++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~ 236 (285)
T COG2897 157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKE 236 (285)
T ss_pred cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCC
Confidence 35666677776654 78999999999998 99999999999877764 456677777776633 899999
Q ss_pred EE-EcCCChhHHHHHHHHHHCCCCee-EecCcHhhhhh-CCCceeccc
Q 029837 140 II-GCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL-SNQLLTEEK 184 (187)
Q Consensus 140 iv-~C~~g~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~-~g~p~~~~~ 184 (187)
|| ||++|.+|...+..|+.+|+.+. .|+|+|.+|.. .+.|++++.
T Consensus 237 vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 237 VIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred EEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 99 99999999999999999999887 89999999987 456988764
No 43
>PRK07411 hypothetical protein; Validated
Probab=99.75 E-value=5.7e-18 Score=141.96 Aligned_cols=104 Identities=23% Similarity=0.258 Sum_probs=83.5
Q ss_pred CCCcccCHHHHHHHHHCC---CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCC
Q 029837 70 GVPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQS 145 (187)
Q Consensus 70 ~~~~~v~~~~~~~~l~~~---~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~ 145 (187)
.....++++++.++++.+ .+|||||+++||+.||||||+|||+.+.... ...+ ....++++++|| ||.+
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~------~~~~-~l~~l~~d~~IVvyC~~ 351 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENG------PGVE-KVKELLNGHRLIAHCKM 351 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcc------cchH-HHhhcCCCCeEEEECCC
Confidence 344679999999998753 6899999999999999999999998521110 0011 223456788999 9999
Q ss_pred ChhHHHHHHHHHHCCCCeeEecCcHhhhhhCCCce
Q 029837 146 GKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLL 180 (187)
Q Consensus 146 g~rs~~aa~~L~~~G~~~v~l~GG~~~W~~~g~p~ 180 (187)
|.||..+++.|+.+||+++.+.||+.+|..+..|.
T Consensus 352 G~RS~~aa~~L~~~G~~~~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 352 GGRSAKALGILKEAGIEGTNVKGGITAWSREVDPS 386 (390)
T ss_pred CHHHHHHHHHHHHcCCCeEEecchHHHHHHhcCCC
Confidence 99999999999999999878999999998876654
No 44
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.75 E-value=5.7e-18 Score=142.11 Aligned_cols=98 Identities=24% Similarity=0.361 Sum_probs=83.3
Q ss_pred CCcccCHHHHHHHHHCC--CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHH-HHhhcCCCCCcEE-EcCCC
Q 029837 71 VPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHDEII-GCQSG 146 (187)
Q Consensus 71 ~~~~v~~~~~~~~l~~~--~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~-~~~~~l~~~~~iv-~C~~g 146 (187)
....++++++.++++++ .+|||||+++||..+|||||+|+|+.. +.. .....++++++|| ||++|
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~-----------l~~~~~~~~l~~d~~iVvyC~~G 353 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSE-----------ILSGEALAKLPQDRTIVLYCKTG 353 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHH-----------hcchhHHhhCCCCCcEEEEcCCC
Confidence 34578999999999764 689999999999999999999999852 221 1234578899999 99999
Q ss_pred hhHHHHHHHHHHCCCCee-EecCcHhhhhhCCCc
Q 029837 147 KRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQL 179 (187)
Q Consensus 147 ~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~~g~p 179 (187)
.||..+++.|++.||++| ++.||+.+|..+..+
T Consensus 354 ~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 354 VRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred hHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 999999999999999988 789999999887654
No 45
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.75 E-value=6.1e-18 Score=137.79 Aligned_cols=100 Identities=21% Similarity=0.197 Sum_probs=79.5
Q ss_pred CCcccCHHHHHHHHHCC-CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChh
Q 029837 71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (187)
Q Consensus 71 ~~~~v~~~~~~~~l~~~-~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~r 148 (187)
....+++.++.++++++ .+|||||++.||..||||||+|+|+.... .....+.... ...++++|| ||.+|.|
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~-----~~~~~l~~~~-~~~kdk~IvvyC~~G~R 183 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR-----EFPPWVEENL-DPLKDKKVVMYCTGGIR 183 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhh-----hhHHHHHHhc-CCCCcCeEEEECCCCcH
Confidence 34578999999988764 89999999999999999999999985210 0111111111 245788999 9999999
Q ss_pred HHHHHHHHHHCCCCee-EecCcHhhhhhC
Q 029837 149 SMMAATDLLNAVSTHA-NYPSKPLTWFLS 176 (187)
Q Consensus 149 s~~aa~~L~~~G~~~v-~l~GG~~~W~~~ 176 (187)
+..++..|+..||++| .|.||+.+|...
T Consensus 184 s~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 184 CEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred HHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 9999999999999998 799999999763
No 46
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.75 E-value=7.6e-18 Score=147.86 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=90.9
Q ss_pred ccCHHHHHHHHHCC-CEEEecCChhhhc--------cccCCCcEEeCcccccC-CCCCCCHHHHHHHhhc--CCCCCcEE
Q 029837 74 SVPVRVAHELLQAG-HRYLDVRTPEEFS--------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEII 141 (187)
Q Consensus 74 ~v~~~~~~~~l~~~-~~iIDvR~~~e~~--------~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--l~~~~~iv 141 (187)
.++.+++.+.++++ .+|||+|+++||. .||||||+|+|+.+.+. .+....++.+++.... ++++++||
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VV 227 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVI 227 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEE
Confidence 46788888888654 7899999999995 69999999999865433 2345566667776654 67899999
Q ss_pred -EcCCChhHHHHHHHHHHCCCCee-EecCcHhhhhh-CCCceecc
Q 029837 142 -GCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL-SNQLLTEE 183 (187)
Q Consensus 142 -~C~~g~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~-~g~p~~~~ 183 (187)
||++|.+|..+++.|+.+||++| .|+|||.+|.. .++|+++.
T Consensus 228 vYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 228 THCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred EECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 99999999999999999999999 89999999987 57898864
No 47
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.73 E-value=1e-17 Score=117.40 Aligned_cols=92 Identities=21% Similarity=0.290 Sum_probs=68.0
Q ss_pred ccCHHHHHHHHHCC-------CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcC--CCCCcEE-Ec
Q 029837 74 SVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII-GC 143 (187)
Q Consensus 74 ~v~~~~~~~~l~~~-------~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~iv-~C 143 (187)
.+++++++++++.+ .+|||||++ ||..||||||+|+|+.. + .+.+......+ .+.++|| ||
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~-~-------~~~~~~~~~~~~~~~~~~iv~~C 73 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQS-C-------YQTLPQVYALFSLAGVKLAIFYC 73 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhH-H-------HHHHHHHHHHhhhcCCCEEEEEC
Confidence 57899999999764 689999999 99999999999999852 1 11122222222 3456788 99
Q ss_pred CC-ChhHHHHHHHHH----HCCC--Cee-EecCcHhhhh
Q 029837 144 QS-GKRSMMAATDLL----NAVS--THA-NYPSKPLTWF 174 (187)
Q Consensus 144 ~~-g~rs~~aa~~L~----~~G~--~~v-~l~GG~~~W~ 174 (187)
.+ |.||..++..|. ..|| .++ +|.||+.+|.
T Consensus 74 ~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 74 GSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred CCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 97 688888876654 3475 677 6899999995
No 48
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.73 E-value=1.4e-17 Score=137.03 Aligned_cols=107 Identities=22% Similarity=0.187 Sum_probs=78.3
Q ss_pred CHHHHHHHHHCCCEEEecCChhhhccccCCCcEEeCcccccCCC-------------------CCCC---HHHHHHHhhc
Q 029837 76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG-------------------MTKN---LKFVEEVSTR 133 (187)
Q Consensus 76 ~~~~~~~~l~~~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~-------------------~~~~---~~~~~~~~~~ 133 (187)
...++.+++.++.+|||||++.||..||||||+|+|+.+..... .... .+.+.+....
T Consensus 4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~ 83 (345)
T PRK11784 4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWAD 83 (345)
T ss_pred cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHh
Confidence 45667777777899999999999999999999999995322100 0011 1122222223
Q ss_pred CC-CCCcEE-EcC-CChhHHHHHHHHHHCCCCeeEecCcHhhhhhCCCceec
Q 029837 134 FR-KHDEII-GCQ-SGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTE 182 (187)
Q Consensus 134 l~-~~~~iv-~C~-~g~rs~~aa~~L~~~G~~~v~l~GG~~~W~~~g~p~~~ 182 (187)
++ ++++|| ||. +|.||..+++.|...||+...+.||+.+|...+++...
T Consensus 84 ~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 84 FPRANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred cccCCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHHHHhhHHHHh
Confidence 33 788899 995 78999999999999999644899999999988765443
No 49
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.71 E-value=2.3e-17 Score=134.05 Aligned_cols=96 Identities=23% Similarity=0.167 Sum_probs=70.8
Q ss_pred CCEEEecCChhhhccccCCCcEEeCcccccCCC----CC------------------CCHHHHHHHhhcCCCCCcEE-Ec
Q 029837 87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----MT------------------KNLKFVEEVSTRFRKHDEII-GC 143 (187)
Q Consensus 87 ~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~----~~------------------~~~~~~~~~~~~l~~~~~iv-~C 143 (187)
+.+|||||++.||..||||||+|||+.+.-+.. .. ..++.+.++....+++..|| ||
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC 81 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC 81 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 368999999999999999999999995321100 00 01223344433445566688 99
Q ss_pred C-CChhHHHHHHHHHHCCCCeeEecCcHhhhhhCCCceec
Q 029837 144 Q-SGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTE 182 (187)
Q Consensus 144 ~-~g~rs~~aa~~L~~~G~~~v~l~GG~~~W~~~g~p~~~ 182 (187)
. +|.||..+++.|+.+||+.+++.||+.+|...+.+...
T Consensus 82 ~~gG~RS~~aa~~L~~~G~~v~~L~GG~~aw~~~~~~~~~ 121 (311)
T TIGR03167 82 WRGGMRSGSLAWLLAQIGFRVPRLEGGYKAYRRFVIDQLE 121 (311)
T ss_pred CCCChHHHHHHHHHHHcCCCEEEecChHHHHHHhhhhhhh
Confidence 5 79999999999999999644889999999998876544
No 50
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.71 E-value=3.7e-17 Score=135.57 Aligned_cols=92 Identities=29% Similarity=0.351 Sum_probs=75.5
Q ss_pred CcccCHHHHHHHHHCCCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHh-hcCCCCCcEE-EcCCChhH
Q 029837 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-TRFRKHDEII-GCQSGKRS 149 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~-~~l~~~~~iv-~C~~g~rs 149 (187)
...++++++.++ ..+.+|||||+++||..+|||||+|+|+. ++..... ..++++++|| ||++|.+|
T Consensus 260 ~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~-----------~l~~~~~~~~~~~~~~IvvyC~~G~rS 327 (355)
T PRK05597 260 GEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLS-----------AIREGANPPSVSAGDEVVVYCAAGVRS 327 (355)
T ss_pred ccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHH-----------HhhhccccccCCCCCeEEEEcCCCHHH
Confidence 346778888754 34589999999999999999999999995 2222211 2357888999 99999999
Q ss_pred HHHHHHHHHCCCCee-EecCcHhhhhh
Q 029837 150 MMAATDLLNAVSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 150 ~~aa~~L~~~G~~~v-~l~GG~~~W~~ 175 (187)
.++++.|+..||++| ++.||+.+|..
T Consensus 328 ~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 328 AQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred HHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 999999999999998 78999999975
No 51
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.7e-16 Score=126.78 Aligned_cols=114 Identities=17% Similarity=0.091 Sum_probs=93.3
Q ss_pred CcccCHHHHHHHHHC------CCEEEecCCh--hhhccccCCCcEEeCcccccC-----CCCCCCHHHHHHHhhc--CCC
Q 029837 72 PTSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRK 136 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~------~~~iIDvR~~--~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--l~~ 136 (187)
...|+++.+.+.+.. +..+++++.. ++|..+|||||+++++..+.. ..++.+++.+.+.+.. +..
T Consensus 10 ~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~ 89 (285)
T COG2897 10 EFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRN 89 (285)
T ss_pred ceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 446899999998863 4566666655 899999999999999875442 3567777777777666 888
Q ss_pred CCcEE-EcCC-ChhHHHHHHHHHHCCCCee-EecCcHhhhhhCCCceecccc
Q 029837 137 HDEII-GCQS-GKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL 185 (187)
Q Consensus 137 ~~~iv-~C~~-g~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~ 185 (187)
+++|| |... +..|.+++|.|+.+|+++| +|+||+.+|+++|+|++.+..
T Consensus 90 d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~ 141 (285)
T COG2897 90 DDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPP 141 (285)
T ss_pred CCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCC
Confidence 99999 9876 5569999999999999999 788999999999999997543
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.64 E-value=1.3e-15 Score=109.40 Aligned_cols=99 Identities=15% Similarity=0.056 Sum_probs=72.1
Q ss_pred cCHHHHHHHHHC---CCEEEecCChhhhccccCCCcEEeCcccccCCC----------CCCCHHHHHHHhhcCCCCCcEE
Q 029837 75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----------MTKNLKFVEEVSTRFRKHDEII 141 (187)
Q Consensus 75 v~~~~~~~~l~~---~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~iv 141 (187)
|++.++.++++. +.+|||+|+..+|..||||||+|+|+....... +...++....+.. . ++++||
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~VV 79 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRR-G-ESLAVV 79 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhc-C-CCCeEE
Confidence 788999999974 489999999999999999999999986422110 1122222222222 2 577888
Q ss_pred -EcCCChh---------HHHHHHHHHH--CCCCee-EecCcHhhhhh
Q 029837 142 -GCQSGKR---------SMMAATDLLN--AVSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 142 -~C~~g~r---------s~~aa~~L~~--~G~~~v-~l~GG~~~W~~ 175 (187)
||.++.+ +..+++.|.. .|+.+| .+.||+.+|..
T Consensus 80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 9998765 6667777777 477788 78899999976
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.61 E-value=2.3e-15 Score=125.32 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=70.6
Q ss_pred ccCHHHHHHHHHCC-CEEEecCChhhhccccCC---CcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChh
Q 029837 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (187)
Q Consensus 74 ~v~~~~~~~~l~~~-~~iIDvR~~~e~~~ghIp---gAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~r 148 (187)
.++++++.+++.++ .+|||||+++||+.|||| ||+|||+.+... ..+.... ...++++ +|| ||++|.|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~-----~~~~~~~-l~~~~~~-~Ivv~C~sG~R 344 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITD-----DADILHA-LSPIDGD-NVVVYCASGIR 344 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhc-----chhhhhh-ccccCCC-cEEEECCCChh
Confidence 57899999998765 789999999999999998 599999852100 0001111 2234444 889 9999999
Q ss_pred HHHHHHHHHHCCCCe-e-EecCcHhh
Q 029837 149 SMMAATDLLNAVSTH-A-NYPSKPLT 172 (187)
Q Consensus 149 s~~aa~~L~~~G~~~-v-~l~GG~~~ 172 (187)
|..++..|+..||++ | .+.||+.+
T Consensus 345 S~~Aa~~L~~~G~~~~v~~l~GG~~~ 370 (370)
T PRK05600 345 SADFIEKYSHLGHELTLHNLPGGVNA 370 (370)
T ss_pred HHHHHHHHHHcCCCCceEEeccccCC
Confidence 999999999999986 6 78999753
No 54
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.45 E-value=2.8e-13 Score=116.61 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=64.4
Q ss_pred HHHHHHHHCCCEEEecCChhhhccccCCC----cEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhHHHH
Q 029837 78 RVAHELLQAGHRYLDVRTPEEFSAGHATG----AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMA 152 (187)
Q Consensus 78 ~~~~~~l~~~~~iIDvR~~~e~~~ghIpg----Ai~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs~~a 152 (187)
.+..+.+.++.++||||+++||..+|||| |+|+|+. .+......++++++|| ||++|.||..+
T Consensus 398 ~~~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~------------~l~~~~~~l~~~~~iivyC~~G~rS~~a 465 (482)
T PRK01269 398 VETVSELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFY------------KLSTQFGDLDQSKTYLLYCDRGVMSRLQ 465 (482)
T ss_pred hHHHHhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCHH------------HHHHHHhhcCCCCeEEEECCCCHHHHHH
Confidence 34444455678999999999999999999 9999995 3434445578889999 99999999999
Q ss_pred HHHHHHCCCCeeEe
Q 029837 153 ATDLLNAVSTHANY 166 (187)
Q Consensus 153 a~~L~~~G~~~v~l 166 (187)
+..|+.+||++|++
T Consensus 466 a~~L~~~G~~nv~~ 479 (482)
T PRK01269 466 ALYLREQGFSNVKV 479 (482)
T ss_pred HHHHHHcCCccEEe
Confidence 99999999999843
No 55
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.34 E-value=1.5e-12 Score=103.16 Aligned_cols=98 Identities=20% Similarity=0.216 Sum_probs=79.8
Q ss_pred CcccCHHHHHHHHHCC-CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhH
Q 029837 72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS 149 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~-~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs 149 (187)
-.-++|+++.+++.+. .++||.|...||+.||..||++.+.. .+..-++.+....+.+ ++++|+ ||..|.|-
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~-----tFrefP~~v~~~~~~~-~~KkVvmyCTGGIRC 185 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIE-----TFREFPAWVEENLDLL-KDKKVVMYCTGGIRC 185 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChh-----hhhhhHHHHHHHHHhc-cCCcEEEEcCCceee
Confidence 4468999999999754 99999999999999999999999975 2223344444443333 567999 99999999
Q ss_pred HHHHHHHHHCCCCee-EecCcHhhhhh
Q 029837 150 MMAATDLLNAVSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 150 ~~aa~~L~~~G~~~v-~l~GG~~~W~~ 175 (187)
..+..+|+..||++| .|.||+..+..
T Consensus 186 EKas~~m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 186 EKASAWMKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred hhhHHHHHHhcchhhhcccchHHHHhh
Confidence 999999999999999 69999987643
No 56
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.21 E-value=2.4e-11 Score=98.07 Aligned_cols=100 Identities=20% Similarity=0.269 Sum_probs=76.5
Q ss_pred CCcccCHHHHHHHHHCC--CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcC-CCCCcEE-EcCCC
Q 029837 71 VPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEII-GCQSG 146 (187)
Q Consensus 71 ~~~~v~~~~~~~~l~~~--~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~iv-~C~~g 146 (187)
....|+..+++++++++ .++||||++.||+..|+|+|+|||+.+.... .-++....+ ....+|+ +|+.|
T Consensus 315 ~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~-------~~~~~~~~~~~~~~~I~ViCrrG 387 (427)
T KOG2017|consen 315 PDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSR-------SGKKLQGDLNTESKDIFVICRRG 387 (427)
T ss_pred hhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhh-------hhhhhcccccccCCCEEEEeCCC
Confidence 34578999999999875 8999999999999999999999999521100 001111122 2456788 99999
Q ss_pred hhHHHHHHHHHHCCCCe-e-EecCcHhhhhhCC
Q 029837 147 KRSMMAATDLLNAVSTH-A-NYPSKPLTWFLSN 177 (187)
Q Consensus 147 ~rs~~aa~~L~~~G~~~-v-~l~GG~~~W~~~g 177 (187)
+.|.+|++.|++..++. | .+.||+.+|..+-
T Consensus 388 NdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~v 420 (427)
T KOG2017|consen 388 NDSQRAVRILREKFPDSSVRDVIGGLKAWAAKV 420 (427)
T ss_pred CchHHHHHHHHhhCCchhhhhhhhHHHHHHHhc
Confidence 99999999999876653 5 6889999998753
No 57
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.19 E-value=1.6e-10 Score=91.32 Aligned_cols=112 Identities=19% Similarity=0.121 Sum_probs=86.9
Q ss_pred ccCHHHHHHHHHC-CCEEEecC---------ChhhhccccCCCcEEeCccccc-----CCCCCCCHHHHHHHhhc--CCC
Q 029837 74 SVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRK 136 (187)
Q Consensus 74 ~v~~~~~~~~l~~-~~~iIDvR---------~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~--l~~ 136 (187)
.++++.+.+.+.+ +.+|||.- ...||..-|||||+++.++... ...+...++.+++.... +++
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n 85 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVDN 85 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCCC
Confidence 5788888888865 48899983 3567888999999999986432 12344554555554444 778
Q ss_pred CCcEE-EcC--CChh-HHHHHHHHHHCCCCee-EecCcHhhhhhCCCceecccc
Q 029837 137 HDEII-GCQ--SGKR-SMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL 185 (187)
Q Consensus 137 ~~~iv-~C~--~g~r-s~~aa~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~ 185 (187)
++.+| |.+ .|.. |.+++|+|+..||++| .|.||+..|+..|+|+...+.
T Consensus 86 ~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~ 139 (286)
T KOG1529|consen 86 GDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKV 139 (286)
T ss_pred CCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccc
Confidence 88888 999 6665 8999999999999999 688999999999999988764
No 58
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=1.3e-10 Score=93.49 Aligned_cols=94 Identities=22% Similarity=0.274 Sum_probs=69.9
Q ss_pred CcccCHHHHHHHHHCC-------CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhc---CC---CCC
Q 029837 72 PTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FR---KHD 138 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~-------~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~---l~---~~~ 138 (187)
...|+++.++.+++.. .+|||+|-+.||..|||+||+||+.. +.+....-. .. +..
T Consensus 155 ~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~-----------~~~~~~f~~~~~~~~~~~~~ 223 (325)
T KOG3772|consen 155 LKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSK-----------ELLQDFFLLKDGVPSGSKRV 223 (325)
T ss_pred ccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccH-----------hhhhhhhccccccccccCce
Confidence 4569999999999752 56999999999999999999999985 333332211 11 234
Q ss_pred cEE-EcC-CChhHHHHHHHHHH------------CCCCee-EecCcHhhhhhC
Q 029837 139 EII-GCQ-SGKRSMMAATDLLN------------AVSTHA-NYPSKPLTWFLS 176 (187)
Q Consensus 139 ~iv-~C~-~g~rs~~aa~~L~~------------~G~~~v-~l~GG~~~W~~~ 176 (187)
.+| ||. +-.|...+|..|+. .-|..+ .|.||+.+|...
T Consensus 224 i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 224 ILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred eEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 566 998 57899999999984 245556 577999999764
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.98 E-value=1.8e-09 Score=85.43 Aligned_cols=89 Identities=24% Similarity=0.396 Sum_probs=73.2
Q ss_pred CCEEEecCChhhhc-----------cccCCCcEEeCcccccCCCCCCC-HHHHHHHhhc--CCCCCcEE-EcCCChhHHH
Q 029837 87 GHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMTKN-LKFVEEVSTR--FRKHDEII-GCQSGKRSMM 151 (187)
Q Consensus 87 ~~~iIDvR~~~e~~-----------~ghIpgAi~ip~~~~~~~~~~~~-~~~~~~~~~~--l~~~~~iv-~C~~g~rs~~ 151 (187)
++.+||.|...+|. .||||||+|+|+.+.+..+.... ++.+...... +.-++++| -|+.|..+..
T Consensus 172 ~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~ 251 (286)
T KOG1529|consen 172 NFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASI 251 (286)
T ss_pred cceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHH
Confidence 48999999988885 68999999999988776554333 5666665443 66689999 9999999999
Q ss_pred HHHHHHHCCCCee-EecCcHhhhhhC
Q 029837 152 AATDLLNAVSTHA-NYPSKPLTWFLS 176 (187)
Q Consensus 152 aa~~L~~~G~~~v-~l~GG~~~W~~~ 176 (187)
.+-.|...| .++ .|+|+|.+|...
T Consensus 252 i~~al~r~g-~~~~lYdGS~~Ew~~~ 276 (286)
T KOG1529|consen 252 IALALERSG-PDAKLYDGSWTEWALR 276 (286)
T ss_pred HHHHHHhcC-CCcceecccHHHHhhc
Confidence 999999999 666 899999999863
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.10 E-value=1e-05 Score=65.25 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=69.7
Q ss_pred CcccCHHHHHHHHHCC-------CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhh-c-CCCCCcEE-
Q 029837 72 PTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-R-FRKHDEII- 141 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~-------~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~-~-l~~~~~iv- 141 (187)
.+.|+++.++++++.. -+|||+|=+.||..|||-.||||... +.+..... . +.-..-+|
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~-----------~~l~~~F~hkplThp~aLif 309 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST-----------KKLGLLFRHKPLTHPRALIF 309 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH-----------HHHHHHHHhccccCceeEEE
Confidence 4579999999999763 35999999999999999999999875 33333322 2 22345577
Q ss_pred EcC-CChhHHHHHHHHHHC------------CCCee-EecCcHhhhhh
Q 029837 142 GCQ-SGKRSMMAATDLLNA------------VSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 142 ~C~-~g~rs~~aa~~L~~~------------G~~~v-~l~GG~~~W~~ 175 (187)
+|. +..|+...|..|+.+ =|..| .+.||+.++-+
T Consensus 310 HCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 310 HCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred EeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 998 478999999999854 24567 57799988654
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.74 E-value=2.5e-05 Score=62.29 Aligned_cols=96 Identities=24% Similarity=0.234 Sum_probs=65.5
Q ss_pred HHHHHHHHHCCCEEEecCChhhhccccCCCcEEeCcccccCC---------CCCC--------------CHHHHHHHhhc
Q 029837 77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS---------GMTK--------------NLKFVEEVSTR 133 (187)
Q Consensus 77 ~~~~~~~l~~~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~---------~~~~--------------~~~~~~~~~~~ 133 (187)
.+....++.++..+||||.+-||..|+.|+++|+|..++.+. .... ....++.+. .
T Consensus 5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask-~ 83 (334)
T COG2603 5 EQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASK-A 83 (334)
T ss_pred HHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHH-H
Confidence 455667777779999999999999999999999998643321 0000 011111111 1
Q ss_pred CCCCCcEE-EcCC-ChhHHHHHHHH-HHCCCCeeEecCcHhhh
Q 029837 134 FRKHDEII-GCQS-GKRSMMAATDL-LNAVSTHANYPSKPLTW 173 (187)
Q Consensus 134 l~~~~~iv-~C~~-g~rs~~aa~~L-~~~G~~~v~l~GG~~~W 173 (187)
+--+.++- +|.. |.||...+.+| +..|++-..+.||..+.
T Consensus 84 f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~~~r~iGGeKal 126 (334)
T COG2603 84 FQEENPVGILCARGGLRSKIVQKWLGYAAGIDYPRVIGGEKAL 126 (334)
T ss_pred HHHhCCcceeeccccchhHHHHHHHHHHHHhhhhhhhchHHHH
Confidence 22334454 7765 88999999999 77888877888998764
No 62
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=97.27 E-value=0.0023 Score=46.02 Aligned_cols=84 Identities=19% Similarity=0.154 Sum_probs=51.1
Q ss_pred cccCHHHHHHHHHCC-CEEEecCChhhhcccc----------CCCc--EEeCcccccCCCCCCCHHHHHHHhhcCC-CCC
Q 029837 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGH----------ATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFR-KHD 138 (187)
Q Consensus 73 ~~v~~~~~~~~l~~~-~~iIDvR~~~e~~~gh----------IpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~l~-~~~ 138 (187)
..+++.++..+.+.| ..|||.|+..|..... -+|- +++|... .. .+++.+..+...+. .++
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~----~~-~~~~~v~~f~~~~~~~~~ 87 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA----GD-ITPDDVETFRAAIGAAEG 87 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC----CC-CCHHHHHHHHHHHHhCCC
Confidence 357888888887778 7899999987643211 0222 5666531 11 23344444433332 357
Q ss_pred cEE-EcCCChhHHHHHHHH-HHCCC
Q 029837 139 EII-GCQSGKRSMMAATDL-LNAVS 161 (187)
Q Consensus 139 ~iv-~C~~g~rs~~aa~~L-~~~G~ 161 (187)
+|+ ||.+|.|+..++..+ ...|.
T Consensus 88 pvL~HC~sG~Rt~~l~al~~~~~g~ 112 (135)
T TIGR01244 88 PVLAYCRSGTRSSLLWGFRQAAEGV 112 (135)
T ss_pred CEEEEcCCChHHHHHHHHHHHHcCC
Confidence 899 999999977766543 33465
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=97.23 E-value=0.0022 Score=44.50 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=41.5
Q ss_pred ccCHHHHHHHHHCC-CEEEecCChhhhccc-------------cCCCcEEeCcccccCCCCCCCHHHHHHHhhcCC-CCC
Q 029837 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAG-------------HATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHD 138 (187)
Q Consensus 74 ~v~~~~~~~~l~~~-~~iIDvR~~~e~~~g-------------hIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~-~~~ 138 (187)
.++++++.++.+.| ..||+.|+..|-... -+ .-+|+|... .....+.+..+...+. ..+
T Consensus 14 Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl-~y~~iPv~~-----~~~~~~~v~~f~~~l~~~~~ 87 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGL-QYVHIPVDG-----GAITEEDVEAFADALESLPK 87 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT--EEEE----T-----TT--HHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeecCC-----CCCCHHHHHHHHHHHHhCCC
Confidence 57999999999999 789999987653210 01 236777641 1233445555443332 356
Q ss_pred cEE-EcCCChhHHHHHHHH
Q 029837 139 EII-GCQSGKRSMMAATDL 156 (187)
Q Consensus 139 ~iv-~C~~g~rs~~aa~~L 156 (187)
+|+ ||++|.|+...|..-
T Consensus 88 Pvl~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 88 PVLAHCRSGTRASALWALA 106 (110)
T ss_dssp SEEEE-SCSHHHHHHHHHH
T ss_pred CEEEECCCChhHHHHHHHH
Confidence 899 999999997766543
No 64
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=95.50 E-value=0.0019 Score=53.02 Aligned_cols=39 Identities=8% Similarity=-0.054 Sum_probs=34.3
Q ss_pred cCHHHHHHHHHCCCEEEecCChhhhccccCCCcEEeCcc
Q 029837 75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113 (187)
Q Consensus 75 v~~~~~~~~l~~~~~iIDvR~~~e~~~ghIpgAi~ip~~ 113 (187)
-+++++.+.+.....++|+|....|..+||||++++|..
T Consensus 16 ~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~ 54 (314)
T PRK00142 16 EDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIE 54 (314)
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHH
Confidence 467788888877778999999999999999999999983
No 65
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=94.80 E-value=0.015 Score=50.86 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=59.8
Q ss_pred CcccCHHHHHHHHHCCCEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCC-----CCCcEE-EcCC
Q 029837 72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-----KHDEII-GCQS 145 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~iv-~C~~ 145 (187)
.+.++.+++..+ ....++|.|...||..+|+++++|+|+. .-+..+++. ..++ .++++| +...
T Consensus 621 ~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~--------~~ea~l~~~-~~l~~~~~~~~~~~v~~~~~ 689 (725)
T KOG1093|consen 621 CPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFN--------NHEADLDWL-RFLPGIVCSEGKKCVVVGKN 689 (725)
T ss_pred CccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCcc--------chHHHHHHh-hcchHhHHhhCCeEEEeccc
Confidence 345677766665 3378999999999999999999999995 111222221 1121 345555 6555
Q ss_pred ChhHHHHHHHHHHCCCCee-EecCcHhhh
Q 029837 146 GKRSMMAATDLLNAVSTHA-NYPSKPLTW 173 (187)
Q Consensus 146 g~rs~~aa~~L~~~G~~~v-~l~GG~~~W 173 (187)
...+.+....+..+-+.++ .+.+|+.+.
T Consensus 690 ~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 690 DKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred hHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 5557777766766667666 566777743
No 66
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.86 E-value=0.79 Score=32.22 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=50.2
Q ss_pred CcccCHHHHHHHHHCC-CEEEecCChhhhc-------------cccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCC-C
Q 029837 72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFS-------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-K 136 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~-~~iIDvR~~~e~~-------------~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~-~ 136 (187)
...++++++.++...+ ..||--|+..|-. ..-+. -.+||.. +.-..++.++.....++ .
T Consensus 13 sgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~-----~~~iT~~dV~~f~~Al~ea 86 (130)
T COG3453 13 SGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT-----GGGITEADVEAFQRALDEA 86 (130)
T ss_pred cCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-----CCCCCHHHHHHHHHHHHHh
Confidence 3457889999888888 6799999865532 11121 3455553 22223445555444433 4
Q ss_pred CCcEE-EcCCChhHHHHHHHHH
Q 029837 137 HDEII-GCQSGKRSMMAATDLL 157 (187)
Q Consensus 137 ~~~iv-~C~~g~rs~~aa~~L~ 157 (187)
+.+|+ ||++|.||...+..-+
T Consensus 87 egPVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 87 EGPVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred CCCEEeeecCCchHHHHHHHHH
Confidence 78999 9999999987765443
No 67
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=92.38 E-value=1.1 Score=32.88 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=42.6
Q ss_pred CCCcccCHHHHHHHHHCC-CEEEecCChhhhcc---ccCCCc--EEeCcccccCC------------------------C
Q 029837 70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSA---GHATGA--INVPYMYRVGS------------------------G 119 (187)
Q Consensus 70 ~~~~~v~~~~~~~~l~~~-~~iIDvR~~~e~~~---ghIpgA--i~ip~~~~~~~------------------------~ 119 (187)
+.+..++.++...+.+-+ ..|||+|++.|... -.++|. +|+|....... .
T Consensus 25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 104 (164)
T PF13350_consen 25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYRE 104 (164)
T ss_dssp S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHH
T ss_pred CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHH
Confidence 344568999988888667 78999999999775 334454 44554321111 0
Q ss_pred C-CCCHHHHHHHhhc-CCCCCcEE-EcCCChh--HHHHHHHHHHCCCC
Q 029837 120 M-TKNLKFVEEVSTR-FRKHDEII-GCQSGKR--SMMAATDLLNAVST 162 (187)
Q Consensus 120 ~-~~~~~~~~~~~~~-l~~~~~iv-~C~~g~r--s~~aa~~L~~~G~~ 162 (187)
+ ....+.+...+.. .+...+++ +|..|.. ...++-.|..+|..
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 105 MLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp GGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 0 1112333333322 22336899 9998743 55666667778874
No 68
>PLN02727 NAD kinase
Probab=92.15 E-value=0.8 Score=42.75 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=52.8
Q ss_pred cccCHHHHHHHHHCC-CEEEecCChhhhccccC------------CCcEEeCcccccCCCCCCCHHHHHHHhhcC-C-CC
Q 029837 73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHA------------TGAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-KH 137 (187)
Q Consensus 73 ~~v~~~~~~~~l~~~-~~iIDvR~~~e~~~ghI------------pgAi~ip~~~~~~~~~~~~~~~~~~~~~~l-~-~~ 137 (187)
..++++++.++.+.| -.||+.|+..|- .+.. =.-+|+|.. ......++.+.+..+.+ + ..
T Consensus 267 gQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs----~~~apt~EqVe~fa~~l~~slp 341 (986)
T PLN02727 267 GQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVE----VRTAPSAEQVEKFASLVSDSSK 341 (986)
T ss_pred CCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecC----CCCCCCHHHHHHHHHHHHhhcC
Confidence 468999999998888 679999997772 2221 133677762 12233456777766666 3 46
Q ss_pred CcEE-EcCCChh--HHHHHHHHH
Q 029837 138 DEII-GCQSGKR--SMMAATDLL 157 (187)
Q Consensus 138 ~~iv-~C~~g~r--s~~aa~~L~ 157 (187)
++|+ ||++|.| ...++.++.
T Consensus 342 kPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 342 KPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred CCEEEECCCCCchHHHHHHHHHH
Confidence 8999 9999984 344555554
No 69
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=91.76 E-value=0.24 Score=39.61 Aligned_cols=36 Identities=33% Similarity=0.376 Sum_probs=28.4
Q ss_pred ccCHHHHHHHHHCC-CEEEecCChhhhccccCCCcEEeCcc
Q 029837 74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYM 113 (187)
Q Consensus 74 ~v~~~~~~~~l~~~-~~iIDvR~~~e~~~ghIpgAi~ip~~ 113 (187)
.++..++.+.+..+ .+++|+|+ +..||.+|+|+-+-
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valP 41 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALP 41 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcch
Confidence 35677777777654 89999999 67899999998763
No 70
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=91.48 E-value=0.88 Score=32.03 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=41.0
Q ss_pred HHHHHHCC-CEEEecCChhhh---ccccCCCcEEeCcccccCCCCCCCHHHH----HHHhhcCCCCCcEE-EcCCCh-hH
Q 029837 80 AHELLQAG-HRYLDVRTPEEF---SAGHATGAINVPYMYRVGSGMTKNLKFV----EEVSTRFRKHDEII-GCQSGK-RS 149 (187)
Q Consensus 80 ~~~~l~~~-~~iIDvR~~~e~---~~ghIpgAi~ip~~~~~~~~~~~~~~~~----~~~~~~l~~~~~iv-~C~~g~-rs 149 (187)
...+...+ ..|||+++..++ ....+ .-.++|+.+.... .....+ +........+++|+ +|..|. ||
T Consensus 20 ~~~L~~~gi~~VI~l~~~~~~~~~~~~~~-~~~~~~~~D~~~~---~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 95 (139)
T cd00127 20 KELLKKLGITHVLNVAKEVPNENLFLSDF-NYLYVPILDLPSQ---DISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRS 95 (139)
T ss_pred HHHHHHcCCCEEEEcccCCCCcccCCCCc-eEEEEEceeCCCC---ChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchh
Confidence 34444456 689999998875 22333 2456766432211 111222 22222233467888 999985 76
Q ss_pred HHH--HHHHHHCCC
Q 029837 150 MMA--ATDLLNAVS 161 (187)
Q Consensus 150 ~~a--a~~L~~~G~ 161 (187)
..+ +..+...|+
T Consensus 96 ~~~~~~~l~~~~~~ 109 (139)
T cd00127 96 ATLVIAYLMKTLGL 109 (139)
T ss_pred HHHHHHHHHHHcCC
Confidence 643 344444554
No 71
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=90.68 E-value=1.3 Score=31.31 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=41.7
Q ss_pred HHHHHHCC-CEEEecCChhhhcc-ccCCCcEEeCcccccCCCCCCCHHHHHHHh----hcCCCCCcEE-EcCCCh-hHHH
Q 029837 80 AHELLQAG-HRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVS----TRFRKHDEII-GCQSGK-RSMM 151 (187)
Q Consensus 80 ~~~~l~~~-~~iIDvR~~~e~~~-ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~----~~l~~~~~iv-~C~~g~-rs~~ 151 (187)
+..+.+.+ ..||+++...+... ..+ --+++|..+.. .....+.+.... .....+.+|+ +|..|. ||..
T Consensus 19 ~~~l~~~gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~~---~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 94 (138)
T smart00195 19 LALLKKLGITHVINVTNEVPNLNKKGF-TYLGVPILDNT---ETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSAT 94 (138)
T ss_pred HHHHHHcCCCEEEEccCCCCCCCCCCC-EEEEEECCCCC---CCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHH
Confidence 34444556 78999988655321 222 34667764311 111122222222 2244677888 999984 7654
Q ss_pred --HHHHHHHCCCC
Q 029837 152 --AATDLLNAVST 162 (187)
Q Consensus 152 --aa~~L~~~G~~ 162 (187)
+++.+...|++
T Consensus 95 v~~~yl~~~~~~~ 107 (138)
T smart00195 95 LIIAYLMKYRNLS 107 (138)
T ss_pred HHHHHHHHHhCCC
Confidence 34445556764
No 72
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=90.12 E-value=0.75 Score=39.47 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.8
Q ss_pred CEEEecCChhhhccccCCCcEEeCcc
Q 029837 88 HRYLDVRTPEEFSAGHATGAINVPYM 113 (187)
Q Consensus 88 ~~iIDvR~~~e~~~ghIpgAi~ip~~ 113 (187)
+.|||+|+.++|..||+..|.|+.-.
T Consensus 327 FFiVDcRpaeqynaGHlstaFhlDc~ 352 (669)
T KOG3636|consen 327 FFIVDCRPAEQYNAGHLSTAFHLDCV 352 (669)
T ss_pred EEEEeccchhhcccccchhhhcccHH
Confidence 78999999999999999999998753
No 73
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=81.83 E-value=4 Score=33.57 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=42.0
Q ss_pred CcccCHHHHHHHHHCC-CEEEecCChhhhcc---ccCC-CcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCC
Q 029837 72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSA---GHAT-GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQS 145 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~-~~iIDvR~~~e~~~---ghIp-gAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~ 145 (187)
...+...++.+.+.+. .+|||+|+..+|.. |||+ |.. |....+ +..+...+..+++.++|+ -|.+
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q--psq~~f-------e~~L~~~l~~~~~~~~i~~e~es 205 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ--PSQKRF-------ENALAEALRRLDPGRPIFVEDES 205 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC--CchHHH-------HHHHHHHHHhCCCCceEEEEeCc
Confidence 4567778888877654 89999999999997 8888 421 221000 122223233466777787 7776
Q ss_pred C
Q 029837 146 G 146 (187)
Q Consensus 146 g 146 (187)
.
T Consensus 206 ~ 206 (311)
T TIGR03167 206 R 206 (311)
T ss_pred h
Confidence 4
No 74
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=74.17 E-value=21 Score=29.74 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=55.8
Q ss_pred cCHHHHHHHHHC----C-CEEEecCChhhhcccc-CCCcEEeCcccccCCCCCCCHHHHHHHhh-----cCCCCCcEE-E
Q 029837 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGH-ATGAINVPYMYRVGSGMTKNLKFVEEVST-----RFRKHDEII-G 142 (187)
Q Consensus 75 v~~~~~~~~l~~----~-~~iIDvR~~~e~~~gh-IpgAi~ip~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~iv-~ 142 (187)
++..++.++++- | ..+|.|.+.+|.+..- +.|+.-|-.++---.++.-+.+....+.. .+++ +.++ +
T Consensus 214 L~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~-~~~~~V 292 (338)
T PLN02460 214 LPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIRE-KGIIVV 292 (338)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCC-CCeEEE
Confidence 455556666542 4 6899999999987533 23554444432111222223334444443 3433 3466 9
Q ss_pred cCCChhHHHHHHHHHHCCCCeeE
Q 029837 143 CQSGKRSMMAATDLLNAVSTHAN 165 (187)
Q Consensus 143 C~~g~rs~~aa~~L~~~G~~~v~ 165 (187)
+.+|.....-...++..|++.|.
T Consensus 293 sESGI~t~~Dv~~l~~~GadAvL 315 (338)
T PLN02460 293 GESGLFTPDDVAYVQNAGVKAVL 315 (338)
T ss_pred ECCCCCCHHHHHHHHHCCCCEEE
Confidence 99999999999999999998763
No 75
>PRK12361 hypothetical protein; Provisional
Probab=73.82 E-value=8.9 Score=33.95 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=40.6
Q ss_pred CHHHHHHHHHCC-CEEEecCChhhhc-cccCC---CcEEeCcccccCCCCCCCHHHHHHHhhc----CCCCCcEE-EcCC
Q 029837 76 PVRVAHELLQAG-HRYLDVRTPEEFS-AGHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEII-GCQS 145 (187)
Q Consensus 76 ~~~~~~~~l~~~-~~iIDvR~~~e~~-~ghIp---gAi~ip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~iv-~C~~ 145 (187)
++.+...+.+.+ ..|||++.+.+.. ....+ .-.++|..+...+ ..+.+++.... ...+.+|+ +|..
T Consensus 109 ~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p----~~~~l~~a~~~i~~~~~~~~~VlVHC~~ 184 (547)
T PRK12361 109 FPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVP----TLAQLNQAINWIHRQVRANKSVVVHCAL 184 (547)
T ss_pred CcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCC----cHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 445556665566 7899999533211 01111 3467776532221 22333333222 34567788 9998
Q ss_pred C-hhHHH-HHHHHHH
Q 029837 146 G-KRSMM-AATDLLN 158 (187)
Q Consensus 146 g-~rs~~-aa~~L~~ 158 (187)
| .||.. ++..|..
T Consensus 185 G~sRSa~vv~ayLm~ 199 (547)
T PRK12361 185 GRGRSVLVLAAYLLC 199 (547)
T ss_pred CCCcHHHHHHHHHHH
Confidence 7 44443 4444543
No 76
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=73.07 E-value=3.1 Score=33.18 Aligned_cols=91 Identities=22% Similarity=0.193 Sum_probs=56.2
Q ss_pred ccCHHHHHHHHHC----C-CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCCh
Q 029837 74 SVPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGK 147 (187)
Q Consensus 74 ~v~~~~~~~~l~~----~-~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~ 147 (187)
.++.+++.++++. | ..+|.|.+.+|.+...--|+.-|-.++.--.++.-+.+...++...++++ ++ +..+|.
T Consensus 141 ~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~--~~~iseSGI 218 (254)
T PF00218_consen 141 ILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKD--VIVISESGI 218 (254)
T ss_dssp GSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTT--SEEEEESS-
T ss_pred hCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccc--eeEEeecCC
Confidence 4566666666642 4 68999999999875443344443333211122222334555555667644 55 889999
Q ss_pred hHHHHHHHHHHCCCCeeEe
Q 029837 148 RSMMAATDLLNAVSTHANY 166 (187)
Q Consensus 148 rs~~aa~~L~~~G~~~v~l 166 (187)
.+..-+..|...|++.+.+
T Consensus 219 ~~~~d~~~l~~~G~davLV 237 (254)
T PF00218_consen 219 KTPEDARRLARAGADAVLV 237 (254)
T ss_dssp SSHHHHHHHCTTT-SEEEE
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 9999999999999987643
No 77
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=68.91 E-value=14 Score=25.53 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=38.4
Q ss_pred HHCC-CEEEecCChhhh---ccccCCCcEEeCcccccCCCCCCC-HHHHHHHhhcCCCCCcEE-EcCCCh-hHHH-HHH-
Q 029837 84 LQAG-HRYLDVRTPEEF---SAGHATGAINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEII-GCQSGK-RSMM-AAT- 154 (187)
Q Consensus 84 l~~~-~~iIDvR~~~e~---~~ghIpgAi~ip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~iv-~C~~g~-rs~~-aa~- 154 (187)
.+.+ ..||+++...+. ....----.++|..+......... ....+........+.+|+ +|..|. ||.. ++.
T Consensus 15 ~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 94 (133)
T PF00782_consen 15 KNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAY 94 (133)
T ss_dssp HHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHH
T ss_pred HHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHH
Confidence 3445 679999986543 222222446677643111111111 112222222244677888 999874 5543 333
Q ss_pred HHHHCCC
Q 029837 155 DLLNAVS 161 (187)
Q Consensus 155 ~L~~~G~ 161 (187)
.+...|.
T Consensus 95 Lm~~~~~ 101 (133)
T PF00782_consen 95 LMKKNGM 101 (133)
T ss_dssp HHHHHTS
T ss_pred HHHHcCC
Confidence 3444565
No 78
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=67.88 E-value=31 Score=27.35 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=43.1
Q ss_pred HHHHHHHHCC-CEEEecCCh----hhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhc----CCCCCcEE-EcCCC-
Q 029837 78 RVAHELLQAG-HRYLDVRTP----EEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEII-GCQSG- 146 (187)
Q Consensus 78 ~~~~~~l~~~-~~iIDvR~~----~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~iv-~C~~g- 146 (187)
..++++...+ ..||++.++ +++....|. -.++|+.+ +..+..+.++++... +.++..|+ +|..|
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~-~~~lpipD----g~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGl 181 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTYNDGEITSAGIN-VHELIFPD----GDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGL 181 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCe-EEEeecCC----CCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCC
Confidence 4445555556 668877542 334333331 24555532 333334444443333 44677788 99986
Q ss_pred hh-HHHHHHHHHHCCCC
Q 029837 147 KR-SMMAATDLLNAVST 162 (187)
Q Consensus 147 ~r-s~~aa~~L~~~G~~ 162 (187)
.| ...++..|.+.|++
T Consensus 182 GRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 182 GRAPVLASIVLIEFGMD 198 (241)
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 44 44566677777874
No 79
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=67.72 E-value=24 Score=32.45 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=58.6
Q ss_pred cCHHHHHHHHHC----C-CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChh
Q 029837 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (187)
Q Consensus 75 v~~~~~~~~l~~----~-~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~r 148 (187)
++.+++.++++. + ..||.|++.+|.+..---|+.-|-.++.--..+.-+.+...++...+++ .++ ++.+|..
T Consensus 144 L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~--~~~~VsESGI~ 221 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPD--DVIKVAESGVF 221 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCC--CcEEEEcCCCC
Confidence 455566666642 4 6899999999987544445544444322222333344556666666753 356 9999999
Q ss_pred HHHHHHHHHHCCCCeeE
Q 029837 149 SMMAATDLLNAVSTHAN 165 (187)
Q Consensus 149 s~~aa~~L~~~G~~~v~ 165 (187)
+..-+..|...|++.+.
T Consensus 222 ~~~d~~~l~~~G~davL 238 (695)
T PRK13802 222 GAVEVEDYARAGADAVL 238 (695)
T ss_pred CHHHHHHHHHCCCCEEE
Confidence 99999999999998763
No 80
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=64.78 E-value=16 Score=27.24 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=35.8
Q ss_pred HHHHHHHHCC-CEEEecCChhhhccccCC-----------CcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcC
Q 029837 78 RVAHELLQAG-HRYLDVRTPEEFSAGHAT-----------GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQ 144 (187)
Q Consensus 78 ~~~~~~l~~~-~~iIDvR~~~e~~~ghIp-----------gAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~ 144 (187)
.++.++...+ ..||=.-+..|...-.+| --.|+|+.+.-.+.....-+.++++...+..+++|+ +|.
T Consensus 62 ~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~ 141 (168)
T PF05706_consen 62 ADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCR 141 (168)
T ss_dssp HHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-S
T ss_pred HHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 3455555555 344556666665543333 224666643222211111123344444466788899 999
Q ss_pred CC-hh-HHHHHHHHHHCC
Q 029837 145 SG-KR-SMMAATDLLNAV 160 (187)
Q Consensus 145 ~g-~r-s~~aa~~L~~~G 160 (187)
.| .| ...||..|.++|
T Consensus 142 GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 142 GGLGRTGLVAACLLLELG 159 (168)
T ss_dssp SSSSHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHc
Confidence 85 44 556777777765
No 81
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=62.29 E-value=44 Score=24.66 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=39.1
Q ss_pred HHHHHHHHCC-CEEEecCC----hhhhccccCCCcEEeCcccccCCCCCCCH----HHHHHHhhc----CCCCCcEE-Ec
Q 029837 78 RVAHELLQAG-HRYLDVRT----PEEFSAGHATGAINVPYMYRVGSGMTKNL----KFVEEVSTR----FRKHDEII-GC 143 (187)
Q Consensus 78 ~~~~~~l~~~-~~iIDvR~----~~e~~~ghIpgAi~ip~~~~~~~~~~~~~----~~~~~~~~~----l~~~~~iv-~C 143 (187)
..++.+.+.+ ..||.+-. ++++...+|. -.++|+.+ ...+.. ++++..... ..++.+|+ +|
T Consensus 31 ~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~-~~~~p~~D----~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC 105 (166)
T PTZ00242 31 LYIKELQRYNVTHLVRVCGPTYDAELLEKNGIE-VHDWPFDD----GAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHC 105 (166)
T ss_pred HHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCE-EEecCCCC----CCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEEC
Confidence 3455555566 66887743 3344444552 35566532 111222 222222211 24577888 99
Q ss_pred CCC-hhHHH-HHHHHHHCC
Q 029837 144 QSG-KRSMM-AATDLLNAV 160 (187)
Q Consensus 144 ~~g-~rs~~-aa~~L~~~G 160 (187)
..| .||.. ++..|...|
T Consensus 106 ~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 106 VAGLGRAPILVALALVEYG 124 (166)
T ss_pred CCCCCHHHHHHHHHHHHhC
Confidence 986 55544 455555544
No 82
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=61.28 E-value=8.5 Score=24.83 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=25.9
Q ss_pred CCCCCcEE-EcCC-Chh-HHHHHHHHHHCCCCeeEecC-cH
Q 029837 134 FRKHDEII-GCQS-GKR-SMMAATDLLNAVSTHANYPS-KP 170 (187)
Q Consensus 134 l~~~~~iv-~C~~-g~r-s~~aa~~L~~~G~~~v~l~G-G~ 170 (187)
++.+.-+| +-.. ..+ -.+|++.|...|+++|.|.| ||
T Consensus 22 f~~~ga~IHl~~~~~l~~IQrAaRkLd~qGI~~V~L~G~~W 62 (77)
T PF12404_consen 22 FNEQGATIHLSEGDDLRAIQRAARKLDGQGIKNVALAGEGW 62 (77)
T ss_pred EcCCCEEEEECCCcchHHHHHHHHHHhhCCCceEEEecCCc
Confidence 34455556 5332 334 67899999999999999987 45
No 83
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=59.24 E-value=50 Score=26.30 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=55.7
Q ss_pred cCHHHHHHHHHC----C-CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChh
Q 029837 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (187)
Q Consensus 75 v~~~~~~~~l~~----~-~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~r 148 (187)
++.+++.++++. | -.+|.|++.+|.+...--|+..|-.++.--.++.-+.+...++...++++ ++ ++.+|..
T Consensus 135 L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~--~~~IsESGI~ 212 (247)
T PRK13957 135 LTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPN--IVKVGESGIE 212 (247)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCC--cEEEEcCCCC
Confidence 456666666643 4 68999999999886444455555443322223333445566666667633 45 8899999
Q ss_pred HHHHHHHHHHCCCCee
Q 029837 149 SMMAATDLLNAVSTHA 164 (187)
Q Consensus 149 s~~aa~~L~~~G~~~v 164 (187)
+..-+..+... ++.+
T Consensus 213 t~~d~~~l~~~-~dav 227 (247)
T PRK13957 213 SRSDLDKFRKL-VDAA 227 (247)
T ss_pred CHHHHHHHHHh-CCEE
Confidence 88888888775 6654
No 84
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.90 E-value=18 Score=28.03 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=33.1
Q ss_pred HHHHHHhhc--CCCCCcEE--EcCCChhHHH--------------------HHHHHHHCCCCee-Eec-CcHhhhhhCC
Q 029837 125 KFVEEVSTR--FRKHDEII--GCQSGKRSMM--------------------AATDLLNAVSTHA-NYP-SKPLTWFLSN 177 (187)
Q Consensus 125 ~~~~~~~~~--l~~~~~iv--~C~~g~rs~~--------------------aa~~L~~~G~~~v-~l~-GG~~~W~~~g 177 (187)
..+..+.+. +.+..+|+ -|.+|..+.. |-..|..+||+|| +.. .|..+|...+
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 344444433 55667777 5556766543 3344788999888 444 5889997743
No 85
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=55.87 E-value=14 Score=27.13 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=22.0
Q ss_pred CCCCCcEE--EcC----CChhHHHHHHHHHHCCCCee-EecCcHhh
Q 029837 134 FRKHDEII--GCQ----SGKRSMMAATDLLNAVSTHA-NYPSKPLT 172 (187)
Q Consensus 134 l~~~~~iv--~C~----~g~rs~~aa~~L~~~G~~~v-~l~GG~~~ 172 (187)
++++.+++ .|. .|..-.+++..|+++|..+. +|+||-..
T Consensus 97 ~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 97 VTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp E-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred EeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 34555666 445 36778899999999999876 89988654
No 86
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=55.79 E-value=11 Score=31.43 Aligned_cols=37 Identities=14% Similarity=-0.026 Sum_probs=28.7
Q ss_pred CcccCHHHHHHHHH-------CCCEEEecCChhhhccccCCCcEE
Q 029837 72 PTSVPVRVAHELLQ-------AGHRYLDVRTPEEFSAGHATGAIN 109 (187)
Q Consensus 72 ~~~v~~~~~~~~l~-------~~~~iIDvR~~~e~~~ghIpgAi~ 109 (187)
...+++.++.+.++ .+.++||||++. |+..++|+-.-
T Consensus 276 ~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr~ 319 (339)
T PRK07688 276 KEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGRV 319 (339)
T ss_pred cCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCCE
Confidence 45688888888772 358899999988 99999885433
No 87
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=52.10 E-value=39 Score=24.93 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=23.0
Q ss_pred CCCCcEE-EcCCC---hhHHHHHHHHHHCCCCee
Q 029837 135 RKHDEII-GCQSG---KRSMMAATDLLNAVSTHA 164 (187)
Q Consensus 135 ~~~~~iv-~C~~g---~rs~~aa~~L~~~G~~~v 164 (187)
++..+|+ +|..| ..+..+++.|...|++..
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~ 56 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVT 56 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEE
Confidence 6778888 99875 568889999999999854
No 88
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=51.47 E-value=33 Score=30.22 Aligned_cols=33 Identities=12% Similarity=-0.072 Sum_probs=28.4
Q ss_pred cEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 139 EII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 139 ~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
.+| +|++...+...++.|...||....+.|++.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~ 308 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLP 308 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 355 999999999999999999998778888753
No 89
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=51.36 E-value=58 Score=25.10 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=27.0
Q ss_pred cCCC--CCcEE-EcCC---ChhHHHHHHHHHHCCCCee-EecC
Q 029837 133 RFRK--HDEII-GCQS---GKRSMMAATDLLNAVSTHA-NYPS 168 (187)
Q Consensus 133 ~l~~--~~~iv-~C~~---g~rs~~aa~~L~~~G~~~v-~l~G 168 (187)
.++. ..+|+ +|.. |.....+|+.|...||+.. ++.|
T Consensus 43 ~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~ 85 (203)
T COG0062 43 EYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLG 85 (203)
T ss_pred HcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeC
Confidence 3554 55788 9985 5678999999999998764 5545
No 90
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=50.47 E-value=82 Score=25.20 Aligned_cols=89 Identities=19% Similarity=0.173 Sum_probs=58.0
Q ss_pred cCHHHHHHHHHC----C-CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEEEcCCChhH
Q 029837 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRS 149 (187)
Q Consensus 75 v~~~~~~~~l~~----~-~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv~C~~g~rs 149 (187)
++.++++++.+. | .++|.|.+.+|.+...--|+.-|-.++---.++.-+.+....+...++++ .+++..+|..+
T Consensus 140 L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~-~~~IsESGI~~ 218 (254)
T COG0134 140 LDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKD-VILISESGIST 218 (254)
T ss_pred cCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCC-cEEEecCCCCC
Confidence 455556666542 4 78999999999886655666555443211122233344455555556555 33388899999
Q ss_pred HHHHHHHHHCCCCee
Q 029837 150 MMAATDLLNAVSTHA 164 (187)
Q Consensus 150 ~~aa~~L~~~G~~~v 164 (187)
..-...+...|.+.+
T Consensus 219 ~~dv~~l~~~ga~a~ 233 (254)
T COG0134 219 PEDVRRLAKAGADAF 233 (254)
T ss_pred HHHHHHHHHcCCCEE
Confidence 999999999998765
No 91
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=49.95 E-value=36 Score=29.23 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=28.2
Q ss_pred CcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 138 DEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 138 ~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
..++ ||++-..+..++..|...|+....+.|++.
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~ 277 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQGFSALALHGDLE 277 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3455 999988899999999999997667888764
No 92
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=49.69 E-value=31 Score=25.32 Aligned_cols=45 Identities=16% Similarity=0.025 Sum_probs=29.6
Q ss_pred HHhhcCCCCCcEE-EcCCCh--hHHHHHHHHHH---CCCCee-EecCcHhhh
Q 029837 129 EVSTRFRKHDEII-GCQSGK--RSMMAATDLLN---AVSTHA-NYPSKPLTW 173 (187)
Q Consensus 129 ~~~~~l~~~~~iv-~C~~g~--rs~~aa~~L~~---~G~~~v-~l~GG~~~W 173 (187)
.....++++..+| .+..|. .|...|..|.. .|..++ .+.||-.+.
T Consensus 59 ~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 59 RILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 3445577888888 888774 48888888876 688777 788876654
No 93
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=49.00 E-value=19 Score=32.29 Aligned_cols=32 Identities=22% Similarity=0.123 Sum_probs=28.2
Q ss_pred EEEcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 140 IIGCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 140 iv~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
||||.+-..+...+..|...|+....|.||+.
T Consensus 234 IIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~ 265 (590)
T COG0514 234 IIYCLTRKKVEELAEWLRKNGISAGAYHAGLS 265 (590)
T ss_pred EEEEeeHHhHHHHHHHHHHCCCceEEecCCCC
Confidence 45999988899999999999998888888875
No 94
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=48.77 E-value=80 Score=25.14 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=49.2
Q ss_pred CHHHHHHHHHC----C-CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEEEcCCChhHH
Q 029837 76 PVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSM 150 (187)
Q Consensus 76 ~~~~~~~~l~~----~-~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv~C~~g~rs~ 150 (187)
+..++.++++. + ..++||.+.+|.....=-|+-.|-.+..-...+..+.+...++...+++ ..++++-+|..+.
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~-~~~vIaegGI~t~ 223 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPS-DRLVVSESGIFTP 223 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCC-CCEEEEEeCCCCH
Confidence 44555555532 3 6788998888765322223333322210001122234455555555543 2233777788888
Q ss_pred HHHHHHHHCCCCeeEe
Q 029837 151 MAATDLLNAVSTHANY 166 (187)
Q Consensus 151 ~aa~~L~~~G~~~v~l 166 (187)
.-+..+...|++.|.+
T Consensus 224 ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 224 EDLKRLAKAGADAVLV 239 (260)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 8888888999987644
No 95
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=46.61 E-value=28 Score=25.97 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=17.7
Q ss_pred hcCCCCCcEE-EcCCC-hhHH-HHH-HHHHHCCC
Q 029837 132 TRFRKHDEII-GCQSG-KRSM-MAA-TDLLNAVS 161 (187)
Q Consensus 132 ~~l~~~~~iv-~C~~g-~rs~-~aa-~~L~~~G~ 161 (187)
..+.+..+|+ +|..| .||. .++ +.+...|.
T Consensus 100 ~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 100 EALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred HHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 3355677888 99986 4544 333 45555444
No 96
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.04 E-value=37 Score=25.76 Aligned_cols=34 Identities=35% Similarity=0.561 Sum_probs=25.8
Q ss_pred ccCHHHHHHHHHCCCEEEecCChhhhccccCCCcEEeCc
Q 029837 74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112 (187)
Q Consensus 74 ~v~~~~~~~~l~~~~~iIDvR~~~e~~~ghIpgAi~ip~ 112 (187)
.+..+++.+.+..+.-||||..|.|=. + || |+||
T Consensus 7 Pin~eEA~eAieGGAdIiDVKNP~EGS---L-GA-NFPW 40 (235)
T COG1891 7 PINREEAIEAIEGGADIIDVKNPAEGS---L-GA-NFPW 40 (235)
T ss_pred cCCHHHHHHHhhCCCceEeccCcccCc---c-cC-CChH
Confidence 467788888888889999999988643 2 32 6776
No 97
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=45.38 E-value=31 Score=22.98 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=19.3
Q ss_pred CCcEE-EcCCChhHHHHHHHHH----HCCCC
Q 029837 137 HDEII-GCQSGKRSMMAATDLL----NAVST 162 (187)
Q Consensus 137 ~~~iv-~C~~g~rs~~aa~~L~----~~G~~ 162 (187)
.++|+ .|.+|..+..++..++ +.|++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~ 33 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP 33 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc
Confidence 46788 9999988777776655 46775
No 98
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=43.51 E-value=1e+02 Score=26.94 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=53.7
Q ss_pred cCHHHHHHHHHC----C-CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChh
Q 029837 75 VPVRVAHELLQA----G-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR 148 (187)
Q Consensus 75 v~~~~~~~~l~~----~-~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~r 148 (187)
++.+++.++++. + ..+|.|++.+|.+..---|+.-|-.++.--.++.-+.+...++...+++ .++ ++.+|..
T Consensus 143 L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~--~~~~vseSGI~ 220 (454)
T PRK09427 143 LDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPA--DVIVISESGIY 220 (454)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCC--CcEEEEeCCCC
Confidence 455566666642 4 6899999999988543335544444322222333344556666666763 355 8889998
Q ss_pred HHHHHHHHHHCCCCee
Q 029837 149 SMMAATDLLNAVSTHA 164 (187)
Q Consensus 149 s~~aa~~L~~~G~~~v 164 (187)
+..-...|+. |++.+
T Consensus 221 t~~d~~~~~~-~~dav 235 (454)
T PRK09427 221 THAQVRELSP-FANGF 235 (454)
T ss_pred CHHHHHHHHh-cCCEE
Confidence 8777777765 67665
No 99
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=43.18 E-value=44 Score=28.64 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=29.3
Q ss_pred CcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 138 DEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 138 ~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
..+| +|+++..+...+-.|+..||..+.+.|-+.
T Consensus 301 ~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqms 335 (476)
T KOG0330|consen 301 NSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMS 335 (476)
T ss_pred CcEEEEEeccchHHHHHHHHHhcCcceecccchhh
Confidence 5666 999999999999999999999887876554
No 100
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=42.54 E-value=39 Score=21.94 Aligned_cols=36 Identities=6% Similarity=-0.139 Sum_probs=27.6
Q ss_pred CCCcEEEcCCChhHHHHHHHHHHCCCCeeEecCcHhh
Q 029837 136 KHDEIIGCQSGKRSMMAATDLLNAVSTHANYPSKPLT 172 (187)
Q Consensus 136 ~~~~iv~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~~ 172 (187)
.+.+|+++. ..-...+...|+..+.+++++.||...
T Consensus 49 ~~~PIll~~-~~l~~~~~~~l~~~~~~~v~iiGg~~~ 84 (92)
T PF04122_consen 49 NNAPILLVN-NSLPSSVKAFLKSLNIKKVYIIGGEGA 84 (92)
T ss_pred cCCeEEEEC-CCCCHHHHHHHHHcCCCEEEEECCCCc
Confidence 567788667 545578888899999999988888654
No 101
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=42.42 E-value=66 Score=27.35 Aligned_cols=35 Identities=14% Similarity=-0.068 Sum_probs=29.0
Q ss_pred CCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 137 HDEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 137 ~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
..+++ ||++-..+...+..|...|+....+.|++.
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~ 280 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMV 280 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCC
Confidence 34566 999988899999999999988778888763
No 102
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=42.10 E-value=39 Score=23.20 Aligned_cols=27 Identities=7% Similarity=0.058 Sum_probs=22.2
Q ss_pred CcEEEcCCChhHHHHHHHHHHCCCCee
Q 029837 138 DEIIGCQSGKRSMMAATDLLNAVSTHA 164 (187)
Q Consensus 138 ~~iv~C~~g~rs~~aa~~L~~~G~~~v 164 (187)
++|++.++|.-+.++.+.++++|++-|
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv 29 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETV 29 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcce
Confidence 345577888889999999999999887
No 103
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=42.05 E-value=63 Score=27.41 Aligned_cols=35 Identities=11% Similarity=-0.074 Sum_probs=28.4
Q ss_pred CCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 137 HDEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 137 ~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
..+++ ||++...+...+..|...|+....+.|++.
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~ 290 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVA 290 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCC
Confidence 34566 999988899999999999997667887753
No 104
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=41.99 E-value=48 Score=26.52 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=36.2
Q ss_pred CCHHHHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHCCCCee
Q 029837 122 KNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAVSTHA 164 (187)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~G~~~v 164 (187)
..-+.++.....+.++..++ ||..-....+....|++.||.++
T Consensus 173 ~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 173 DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccch
Confidence 44567777777788899999 99998889999999999999765
No 105
>PRK10565 putative carbohydrate kinase; Provisional
Probab=38.17 E-value=69 Score=28.29 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=26.1
Q ss_pred CCCCCcEE-EcCC---ChhHHHHHHHHHHCCCCee-EecC
Q 029837 134 FRKHDEII-GCQS---GKRSMMAATDLLNAVSTHA-NYPS 168 (187)
Q Consensus 134 l~~~~~iv-~C~~---g~rs~~aa~~L~~~G~~~v-~l~G 168 (187)
+++..+|+ +|.. |.....+++.|...||+.. ++.+
T Consensus 57 ~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~V~v~~~~ 96 (508)
T PRK10565 57 YPDARHWLVLCGHGNNGGDGYVVARLAQAAGIDVTLLAQE 96 (508)
T ss_pred cCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCceEEEEEC
Confidence 44556787 9975 5778999999999999764 5443
No 106
>PTZ00110 helicase; Provisional
Probab=37.93 E-value=71 Score=28.37 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=29.9
Q ss_pred CCCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 136 KHDEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 136 ~~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
...++| ||++-..+...+..|+..|+..+.+.|++.
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~ 412 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKK 412 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCc
Confidence 456677 999988899999999999998777877753
No 107
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=37.41 E-value=81 Score=23.17 Aligned_cols=45 Identities=16% Similarity=-0.002 Sum_probs=31.2
Q ss_pred HHhhcCCCCCcEE-EcCCCh--hHHHHHHHHHHC---CCCee-EecCcHhhh
Q 029837 129 EVSTRFRKHDEII-GCQSGK--RSMMAATDLLNA---VSTHA-NYPSKPLTW 173 (187)
Q Consensus 129 ~~~~~l~~~~~iv-~C~~g~--rs~~aa~~L~~~---G~~~v-~l~GG~~~W 173 (187)
.....++++..+| .+..|. .|...|..|... |..++ .+.||-.++
T Consensus 59 ~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 59 RILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 3445577777788 887774 488888888653 55566 788886554
No 108
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=37.31 E-value=85 Score=27.40 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=24.3
Q ss_pred CcEE-EcCC---ChhHHHHHHHHHHCCCCee-EecC
Q 029837 138 DEII-GCQS---GKRSMMAATDLLNAVSTHA-NYPS 168 (187)
Q Consensus 138 ~~iv-~C~~---g~rs~~aa~~L~~~G~~~v-~l~G 168 (187)
++|+ +|.. |.....+|+.|...||+.. ++.+
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~ 95 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPK 95 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEEC
Confidence 5787 9985 5678899999999999864 5543
No 109
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=37.30 E-value=33 Score=24.16 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=16.4
Q ss_pred EcCC-ChhHHHHHHHHHHCCCCee-EecCcHhhh
Q 029837 142 GCQS-GKRSMMAATDLLNAVSTHA-NYPSKPLTW 173 (187)
Q Consensus 142 ~C~~-g~rs~~aa~~L~~~G~~~v-~l~GG~~~W 173 (187)
+|.. -.||..|...|+.+.-.++ +..-|+.+|
T Consensus 4 VC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 4 VCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred EeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 5643 3556666666655442334 344555544
No 110
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=37.14 E-value=44 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=18.6
Q ss_pred CcEE-EcCCChhHHHHHHHHH----HCCCC
Q 029837 138 DEII-GCQSGKRSMMAATDLL----NAVST 162 (187)
Q Consensus 138 ~~iv-~C~~g~rs~~aa~~L~----~~G~~ 162 (187)
++|+ .|++|..+..++..++ +.|++
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~ 31 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD 31 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc
Confidence 3578 9999998777776654 46775
No 111
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=37.05 E-value=27 Score=24.50 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=20.8
Q ss_pred EE-EcCC-ChhHHHHHHHHHHC----CCCee-EecCcHhhh
Q 029837 140 II-GCQS-GKRSMMAATDLLNA----VSTHA-NYPSKPLTW 173 (187)
Q Consensus 140 iv-~C~~-g~rs~~aa~~L~~~----G~~~v-~l~GG~~~W 173 (187)
|+ +|.. --||..|...|+.+ +-.++ ....|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 45 6765 45677777666665 44555 455666655
No 112
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=37.02 E-value=42 Score=22.30 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=17.7
Q ss_pred cEE-EcCCChhHHHHHHHHH----HCCCC
Q 029837 139 EII-GCQSGKRSMMAATDLL----NAVST 162 (187)
Q Consensus 139 ~iv-~C~~g~rs~~aa~~L~----~~G~~ 162 (187)
+|+ .|.+|..+..++..++ +.|++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~ 29 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID 29 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc
Confidence 367 9999988777776655 45765
No 113
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=36.91 E-value=80 Score=27.19 Aligned_cols=34 Identities=9% Similarity=-0.010 Sum_probs=28.1
Q ss_pred CcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 138 DEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 138 ~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
.+++ ||++-..+...+..|...|+....+.|++.
T Consensus 246 ~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~ 280 (456)
T PRK10590 246 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKS 280 (456)
T ss_pred CcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4566 999988899999999999998777777753
No 114
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=36.80 E-value=86 Score=22.02 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=24.5
Q ss_pred CCCcEEEcCCChhHHHHHHHHHHCCCCeeEec
Q 029837 136 KHDEIIGCQSGKRSMMAATDLLNAVSTHANYP 167 (187)
Q Consensus 136 ~~~~iv~C~~g~rs~~aa~~L~~~G~~~v~l~ 167 (187)
+++++++.+.|..+..++..|...|++++++.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~ 42 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIV 42 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEE
Confidence 45667744558889999999999999988543
No 115
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=36.10 E-value=87 Score=27.07 Aligned_cols=48 Identities=15% Similarity=-0.040 Sum_probs=29.8
Q ss_pred HHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHH-C----CCCee-EecCcHhhhh
Q 029837 127 VEEVSTRFRKHDEII-GCQSGKRSMMAATDLLN-A----VSTHA-NYPSKPLTWF 174 (187)
Q Consensus 127 ~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~-~----G~~~v-~l~GG~~~W~ 174 (187)
.+++....+.....+ +|++|..|..+|-+|.. . |-..+ ...|++.+|.
T Consensus 123 Ae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 123 AKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred HHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 333333344443566 99999988887766644 2 54445 6777777764
No 116
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=35.67 E-value=1.3e+02 Score=19.99 Aligned_cols=35 Identities=20% Similarity=0.040 Sum_probs=25.9
Q ss_pred CCCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcH
Q 029837 136 KHDEII-GCQSGKRSMMAATDLLNAVSTHANYPSKP 170 (187)
Q Consensus 136 ~~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~ 170 (187)
.+.+++ ||.+-.....+...|...+..-..+.|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 456677 99988888888888888766544666664
No 117
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=35.47 E-value=44 Score=20.72 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=22.3
Q ss_pred CcccCHHHHHHHHHCC--CEEEecCChhh
Q 029837 72 PTSVPVRVAHELLQAG--HRYLDVRTPEE 98 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~--~~iIDvR~~~e 98 (187)
..-|+-+++.+++.++ +.|+|..+-++
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 3458999999999887 89999987654
No 118
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.21 E-value=78 Score=27.40 Aligned_cols=36 Identities=25% Similarity=0.177 Sum_probs=29.3
Q ss_pred CCCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 136 KHDEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 136 ~~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
+++..| ||.+-..+..++..|+..|+....|.||+.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCC
Confidence 455545 999999999999999999998777777764
No 119
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=35.10 E-value=86 Score=28.01 Aligned_cols=35 Identities=17% Similarity=-0.025 Sum_probs=28.5
Q ss_pred CCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 137 HDEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 137 ~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
+...| ||.+-..+..++..|...|+....+.||+.
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~ 259 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLS 259 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 34556 999988899999999999998777777764
No 120
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=34.64 E-value=48 Score=21.19 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=17.5
Q ss_pred cEE-EcCCChhHHHHH-HH----HHHCCCCee
Q 029837 139 EII-GCQSGKRSMMAA-TD----LLNAVSTHA 164 (187)
Q Consensus 139 ~iv-~C~~g~rs~~aa-~~----L~~~G~~~v 164 (187)
+|+ .|.+|..+...+ .. +.+.|++..
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~ 32 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVE 32 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceE
Confidence 477 999997755555 44 456787654
No 121
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=34.04 E-value=64 Score=21.34 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=15.9
Q ss_pred cEE-EcCCChhHH-HHHHH----HHHCCCC
Q 029837 139 EII-GCQSGKRSM-MAATD----LLNAVST 162 (187)
Q Consensus 139 ~iv-~C~~g~rs~-~aa~~----L~~~G~~ 162 (187)
+|+ .|++|.-+. .++.. |.+.|++
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~ 33 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP 33 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe
Confidence 578 999998544 43444 4557875
No 122
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=33.90 E-value=33 Score=29.84 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=33.1
Q ss_pred EEEcCCChhHHHHHHHHHHCCCCeeEecCcHh---------hhhhCCCcee
Q 029837 140 IIGCQSGKRSMMAATDLLNAVSTHANYPSKPL---------TWFLSNQLLT 181 (187)
Q Consensus 140 iv~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~---------~W~~~g~p~~ 181 (187)
||||++-....++|-.|...|...+.|.-|.. +|-....|+.
T Consensus 259 IVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 259 IVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred EEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 66999988888999999999998875554543 6888877764
No 123
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=33.67 E-value=1.7e+02 Score=26.91 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=29.3
Q ss_pred CCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcH
Q 029837 137 HDEII-GCQSGKRSMMAATDLLNAVSTHANYPSKP 170 (187)
Q Consensus 137 ~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~ 170 (187)
.++++ +|++-..+...+..|...|+....+.|..
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~ 507 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQ 507 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCc
Confidence 56788 99999999999999999999877777754
No 124
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=33.50 E-value=93 Score=28.28 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=27.3
Q ss_pred CcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcH
Q 029837 138 DEII-GCQSGKRSMMAATDLLNAVSTHANYPSKP 170 (187)
Q Consensus 138 ~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~ 170 (187)
..+| ||++-..+...+..|...||....+.|.+
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~ 279 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDM 279 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCC
Confidence 3455 99998889999999999999876777764
No 125
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=33.42 E-value=1.3e+02 Score=22.91 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=22.4
Q ss_pred CCCCCcEE-EcCC---ChhHHHHHHHHHHCCCC
Q 029837 134 FRKHDEII-GCQS---GKRSMMAATDLLNAVST 162 (187)
Q Consensus 134 l~~~~~iv-~C~~---g~rs~~aa~~L~~~G~~ 162 (187)
+++.++|+ +|.. |.....+++.|...|++
T Consensus 42 ~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~ 74 (205)
T TIGR00197 42 FPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE 74 (205)
T ss_pred cCCCCeEEEEECCCCCccHHHHHHHHHHhCCCE
Confidence 45566788 9985 67789999999887765
No 126
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=33.07 E-value=91 Score=25.57 Aligned_cols=46 Identities=13% Similarity=0.025 Sum_probs=33.1
Q ss_pred HHHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHCCCC-ee-EecCcH
Q 029837 125 KFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAVST-HA-NYPSKP 170 (187)
Q Consensus 125 ~~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~G~~-~v-~l~GG~ 170 (187)
+.+......+.++.+++ +|++-..+...+..|++.+.+ .+ .+.|++
T Consensus 210 ~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 210 SSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred HHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 34444444444566777 999988899999999998875 45 677775
No 127
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=33.00 E-value=1e+02 Score=26.86 Aligned_cols=47 Identities=17% Similarity=0.088 Sum_probs=31.2
Q ss_pred HHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHC--CCCee-EecCcHhhhh
Q 029837 127 VEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWF 174 (187)
Q Consensus 127 ~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~--G~~~v-~l~GG~~~W~ 174 (187)
.+.+...++. -.-| +|++|..+..+|-.|... |-+.| ...|++.+|.
T Consensus 145 Ae~l~~~~p~-~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~ 195 (474)
T PLN02482 145 AEMVIDAVPS-VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHA 195 (474)
T ss_pred HHHHHHhCCC-CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCc
Confidence 3333333443 3456 999999988888777553 55555 6778888875
No 128
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.91 E-value=1.3e+02 Score=25.88 Aligned_cols=28 Identities=7% Similarity=-0.050 Sum_probs=22.8
Q ss_pred HHHHHHHHHCCCCeeEecCcHhhhhhCC
Q 029837 150 MMAATDLLNAVSTHANYPSKPLTWFLSN 177 (187)
Q Consensus 150 ~~aa~~L~~~G~~~v~l~GG~~~W~~~g 177 (187)
......|+.+||+.+.|.||+.+|..+-
T Consensus 54 l~kL~~fQ~aGh~~ivLigd~ta~IgDp 81 (401)
T COG0162 54 LMKLRRFQDAGHKPIVLIGDATAMIGDP 81 (401)
T ss_pred HHHHHHHHHCCCeEEEEecccceecCCC
Confidence 4455678889999889999999998753
No 129
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=32.81 E-value=67 Score=29.27 Aligned_cols=47 Identities=11% Similarity=0.035 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 125 KFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 125 ~~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
.++..+...+..+.+++ +|++-.++.+.+..|...|+...++.|++.
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~ 481 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDID 481 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCC
Confidence 34444444455677788 999988999999999999997657766644
No 130
>PF10903 DUF2691: Protein of unknown function (DUF2691); InterPro: IPR020216 This entry represents a group of uncharacterised proteins.
Probab=32.65 E-value=1.2e+02 Score=22.23 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=50.6
Q ss_pred CcccCHHHHHHHHHCC---CEEEecCChhhhccccCCCcEEeCcccccCCCCCCCHHHHHHHhhc---CCCCCcEE-EcC
Q 029837 72 PTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FRKHDEII-GCQ 144 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~---~~iIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~---l~~~~~iv-~C~ 144 (187)
...++-.++++.++.+ .+++|++. |..|-...-|+= + ++|+..-... +-...-|- ||.
T Consensus 54 ~~~~~G~~lk~~l~~~~YYlIF~dLkA---fp~~~~~~~I~t-y-----------eeFl~S~CelvllIvD~~yv~IycK 118 (153)
T PF10903_consen 54 EEIMTGSELKKLLKDNDYYLIFLDLKA---FPKGETVTEINT-Y-----------EEFLNSKCELVLLIVDSSYVSIYCK 118 (153)
T ss_pred ceeeehHHHHHHhhcCCeEEEEEEeee---CcCCCCcccccc-H-----------HHHhcCCceEEEEEEeccEEEEEEc
Confidence 3458889999999865 56778775 554433222221 1 2344332222 22334455 999
Q ss_pred CChhHHHHHHHHHHCCCCee-Eec
Q 029837 145 SGKRSMMAATDLLNAVSTHA-NYP 167 (187)
Q Consensus 145 ~g~rs~~aa~~L~~~G~~~v-~l~ 167 (187)
.-..-...-+..+..||.++ ++.
T Consensus 119 d~~~i~~lyqna~~~gy~~i~yIT 142 (153)
T PF10903_consen 119 DQEIIESLYQNAQNQGYENIEYIT 142 (153)
T ss_pred CHHHHHHHHHHHHHCCceEEEEEe
Confidence 87777888888889999998 654
No 131
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.43 E-value=1.1e+02 Score=27.50 Aligned_cols=36 Identities=6% Similarity=-0.177 Sum_probs=29.0
Q ss_pred CCCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 136 KHDEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 136 ~~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
...+++ ||++-..+..++..|...|+....+.|++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~ 292 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVP 292 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 345566 999988899999999999997667777643
No 132
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=32.43 E-value=66 Score=27.99 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=27.7
Q ss_pred CCCcEE-EcCC---ChhHHHHHHHHHHCCCCeeEe
Q 029837 136 KHDEII-GCQS---GKRSMMAATDLLNAVSTHANY 166 (187)
Q Consensus 136 ~~~~iv-~C~~---g~rs~~aa~~L~~~G~~~v~l 166 (187)
++++|| +.+| |..+.+..++|+++|-+.|++
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHv 381 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHV 381 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEEEE
Confidence 578999 9997 888999999999999999854
No 133
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=32.18 E-value=1.1e+02 Score=27.70 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=29.3
Q ss_pred CCCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 136 KHDEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 136 ~~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
++...| ||++-..+...+..|...|+....+.||+.
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~ 271 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLD 271 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCC
Confidence 344556 999988899999999999997667888764
No 134
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=31.92 E-value=53 Score=21.54 Aligned_cols=21 Identities=19% Similarity=-0.019 Sum_probs=14.0
Q ss_pred CcEE-EcCCChhHHHHHHHHHH
Q 029837 138 DEII-GCQSGKRSMMAATDLLN 158 (187)
Q Consensus 138 ~~iv-~C~~g~rs~~aa~~L~~ 158 (187)
...| ||..++.-.+++|+.++
T Consensus 7 ~i~I~YCtQCnWlLRa~WmaQE 28 (99)
T COG3526 7 RIEITYCTQCNWLLRAAWMAQE 28 (99)
T ss_pred eEEEEEechhhHHHHHHHHHHH
Confidence 4456 99998776666665443
No 135
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=31.59 E-value=79 Score=28.90 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 125 KFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 125 ~~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
.++..+.....++.+++ +|.+-.++...+..|...|+...++.|++.
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~ 477 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEID 477 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCC
Confidence 45555544455677788 999988999999999999997557766643
No 136
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=31.44 E-value=53 Score=22.17 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=17.8
Q ss_pred cEE-EcCCChhHHHHHHHHH----HCCCC
Q 029837 139 EII-GCQSGKRSMMAATDLL----NAVST 162 (187)
Q Consensus 139 ~iv-~C~~g~rs~~aa~~L~----~~G~~ 162 (187)
+|+ .|.+|..|..++..++ +.|++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~ 30 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP 30 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc
Confidence 477 9998987888887665 46775
No 137
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=31.24 E-value=70 Score=27.36 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=27.3
Q ss_pred CCCcEE-EcCC---ChhHHHHHHHHHHCCCCeeEe
Q 029837 136 KHDEII-GCQS---GKRSMMAATDLLNAVSTHANY 166 (187)
Q Consensus 136 ~~~~iv-~C~~---g~rs~~aa~~L~~~G~~~v~l 166 (187)
.+++|| +.++ |..+....++|++.|-++|++
T Consensus 355 ~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~ 389 (474)
T KOG0572|consen 355 EGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHI 389 (474)
T ss_pred CCceEEEEecceeccCchHHHHHHHHHcCCcEEEE
Confidence 578899 9887 888999999999999999865
No 138
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=31.19 E-value=72 Score=21.28 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=18.3
Q ss_pred CcEE-EcCCChhHHHHH-----HHHHHCCCC
Q 029837 138 DEII-GCQSGKRSMMAA-----TDLLNAVST 162 (187)
Q Consensus 138 ~~iv-~C~~g~rs~~aa-----~~L~~~G~~ 162 (187)
.+|+ .|.+|.-+..+. ..|+++|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 4688 999997755444 467889995
No 139
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=31.02 E-value=2.5e+02 Score=21.78 Aligned_cols=28 Identities=4% Similarity=-0.101 Sum_probs=20.5
Q ss_pred CCcEE-EcCCChhHHHHHHHH-HHCCCCee
Q 029837 137 HDEII-GCQSGKRSMMAATDL-LNAVSTHA 164 (187)
Q Consensus 137 ~~~iv-~C~~g~rs~~aa~~L-~~~G~~~v 164 (187)
.+..+ +|.+..++...+..| .+.||.-+
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~~l 176 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFRPL 176 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCccee
Confidence 46677 999988877665555 66898765
No 140
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=30.95 E-value=84 Score=24.89 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=23.5
Q ss_pred CcEE-EcCC---ChhHHHHHHHHHHCCCCee-Ee
Q 029837 138 DEII-GCQS---GKRSMMAATDLLNAVSTHA-NY 166 (187)
Q Consensus 138 ~~iv-~C~~---g~rs~~aa~~L~~~G~~~v-~l 166 (187)
++|+ +|.. |.....+|+.|...||+.. ++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEE
Confidence 5777 9974 6779999999999999764 44
No 141
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=30.27 E-value=1.2e+02 Score=25.87 Aligned_cols=50 Identities=14% Similarity=0.051 Sum_probs=31.5
Q ss_pred HHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHH--CCCCee-EecCcHhhhhh
Q 029837 126 FVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLN--AVSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 126 ~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~--~G~~~v-~l~GG~~~W~~ 175 (187)
+.+++...+++...-| +|++|..|..+|-.+.. -|-+.+ .+.|++.+|..
T Consensus 91 la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 144 (433)
T PRK08117 91 LAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTL 144 (433)
T ss_pred HHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCH
Confidence 3444444454444456 99999998887766644 254555 67788877654
No 142
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.98 E-value=2e+02 Score=20.28 Aligned_cols=19 Identities=11% Similarity=-0.081 Sum_probs=11.1
Q ss_pred CHHHHHHHHHC-CCEEEecC
Q 029837 76 PVRVAHELLQA-GHRYLDVR 94 (187)
Q Consensus 76 ~~~~~~~~l~~-~~~iIDvR 94 (187)
-..-+...++. ++.+||..
T Consensus 18 g~~iv~~~l~~~GfeVi~lg 37 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGP 37 (132)
T ss_pred HHHHHHHHHHhCCcEEEECC
Confidence 33444555544 58888875
No 143
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=29.94 E-value=67 Score=20.66 Aligned_cols=21 Identities=19% Similarity=-0.069 Sum_probs=16.9
Q ss_pred CCChhHHHHHHHHHHCCCCee
Q 029837 144 QSGKRSMMAATDLLNAVSTHA 164 (187)
Q Consensus 144 ~~g~rs~~aa~~L~~~G~~~v 164 (187)
.....+.+++..|+..||..+
T Consensus 13 ~~~GlA~~~a~~L~~~Gf~v~ 33 (90)
T PF13399_consen 13 GVSGLAARVADALRNRGFTVV 33 (90)
T ss_pred CCcCHHHHHHHHHHHCCCcee
Confidence 334569999999999999865
No 144
>PRK07678 aminotransferase; Validated
Probab=29.93 E-value=1.2e+02 Score=26.09 Aligned_cols=49 Identities=10% Similarity=-0.025 Sum_probs=29.4
Q ss_pred HHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHC-----C---CCee-EecCcHhhhhh
Q 029837 126 FVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNA-----V---STHA-NYPSKPLTWFL 175 (187)
Q Consensus 126 ~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~-----G---~~~v-~l~GG~~~W~~ 175 (187)
+.+.+...++... -| +|++|..|..+|-.|... | -+.| .+.||+.+|..
T Consensus 94 lae~l~~~~~~~~-~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~ 152 (451)
T PRK07678 94 LAEKLNEWLGGEY-VIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSM 152 (451)
T ss_pred HHHHHHHhCCCCC-EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccH
Confidence 3444444344333 46 999998887776665432 3 2345 67788887753
No 145
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=28.99 E-value=63 Score=19.75 Aligned_cols=20 Identities=40% Similarity=0.508 Sum_probs=13.4
Q ss_pred cEE-EcCCCh-hHHHHHHHHHH
Q 029837 139 EII-GCQSGK-RSMMAATDLLN 158 (187)
Q Consensus 139 ~iv-~C~~g~-rs~~aa~~L~~ 158 (187)
+++ +|.+|. .|..+...|++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHH
Confidence 367 999984 46666666654
No 146
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=28.94 E-value=1.8e+02 Score=24.28 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=21.6
Q ss_pred cCHHHH-HHHHHCCCEEEecCChhhhccccCCCcEEe
Q 029837 75 VPVRVA-HELLQAGHRYLDVRTPEEFSAGHATGAINV 110 (187)
Q Consensus 75 v~~~~~-~~~l~~~~~iIDvR~~~e~~~ghIpgAi~i 110 (187)
....++ .++.+.+..+||+|+..+|. |..-|.+..
T Consensus 152 sGKT~iL~~L~~~~~~vlDlE~~aehr-GS~fG~~~~ 187 (345)
T PRK11784 152 SGKTELLQALANAGAQVLDLEGLANHR-GSSFGRLGG 187 (345)
T ss_pred ccHHHHHHHHHhcCCeEEECCchhhhc-cccccCCCC
Confidence 333444 44444568899999999997 333344333
No 147
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=28.60 E-value=74 Score=21.62 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=18.3
Q ss_pred CcEE-EcCCChhHHHHHHHHH----HCCCC
Q 029837 138 DEII-GCQSGKRSMMAATDLL----NAVST 162 (187)
Q Consensus 138 ~~iv-~C~~g~rs~~aa~~L~----~~G~~ 162 (187)
++|+ +|..|..+...+..++ +.|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 4688 9999998888775443 45664
No 148
>KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism]
Probab=28.46 E-value=50 Score=27.55 Aligned_cols=52 Identities=8% Similarity=0.017 Sum_probs=37.1
Q ss_pred HHHHHHhhcCCCCC---cEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHhhhhhC
Q 029837 125 KFVEEVSTRFRKHD---EII-GCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLS 176 (187)
Q Consensus 125 ~~~~~~~~~l~~~~---~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~~W~~~ 176 (187)
..-..+.+-+|... .|= +|.+|..+...+..--+.|+..+.+.||+..-...
T Consensus 70 aRQaalgAGlp~sv~~tTvNkvCaSgmKAv~laaQsI~~G~~divVaGGmEsMS~v 125 (396)
T KOG1390|consen 70 ARQAALGAGLPYSVPATTVNKVCASGMKAVILAAQSIQTGHADIVVAGGMESMSNV 125 (396)
T ss_pred HHHHHhhcCCCcceeeEeehhhhhhhHHHHHHHHHHHhcCCccEEEecccchhccC
Confidence 34444444465442 334 89999999988888889999999999998765443
No 149
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=28.30 E-value=88 Score=30.02 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=28.5
Q ss_pred CCcEE-EcCCChhHHHHHHHH-HHCCCCeeEecCcHh
Q 029837 137 HDEII-GCQSGKRSMMAATDL-LNAVSTHANYPSKPL 171 (187)
Q Consensus 137 ~~~iv-~C~~g~rs~~aa~~L-~~~G~~~v~l~GG~~ 171 (187)
..++| +|.+...+......| ...|++.+.+.||+.
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s 529 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMS 529 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCC
Confidence 45677 999988899999999 467998778888864
No 150
>PRK06148 hypothetical protein; Provisional
Probab=28.25 E-value=1.2e+02 Score=29.20 Aligned_cols=48 Identities=15% Similarity=-0.022 Sum_probs=32.1
Q ss_pred HHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHC--CCCee-EecCcHhhhhh
Q 029837 128 EEVSTRFRKHDEII-GCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 128 ~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~--G~~~v-~l~GG~~~W~~ 175 (187)
+.+...++.+-..| +|++|..|..+|-+|... |-+.| .+.||+.+|..
T Consensus 670 e~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~ 721 (1013)
T PRK06148 670 ERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTT 721 (1013)
T ss_pred HHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCc
Confidence 33333354444567 999999988888777553 55555 67888888754
No 151
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.20 E-value=92 Score=27.50 Aligned_cols=44 Identities=16% Similarity=0.024 Sum_probs=30.9
Q ss_pred CCCcEEEcCCChhHHHHHHHHHHCCCCeeEec-----Cc-HhhhhhCCCc
Q 029837 136 KHDEIIGCQSGKRSMMAATDLLNAVSTHANYP-----SK-PLTWFLSNQL 179 (187)
Q Consensus 136 ~~~~iv~C~~g~rs~~aa~~L~~~G~~~v~l~-----GG-~~~W~~~g~p 179 (187)
+...||+-..|.....||+.|+..|++.++|. || +..|...+.+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~ 63 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGD 63 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCC
Confidence 34466644558888899999999999966664 66 4555555544
No 152
>PTZ00424 helicase 45; Provisional
Probab=27.64 E-value=1.5e+02 Score=24.64 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=27.4
Q ss_pred CcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 138 DEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 138 ~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
.+++ ||.+-..+...+..|...|+....+.|++.
T Consensus 268 ~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~ 302 (401)
T PTZ00424 268 TQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMD 302 (401)
T ss_pred CeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4456 999988899999999999987667778764
No 153
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=26.94 E-value=1.5e+02 Score=26.56 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=23.6
Q ss_pred CcEE-EcCC---ChhHHHHHHHHHHCCCCee-Eec
Q 029837 138 DEII-GCQS---GKRSMMAATDLLNAVSTHA-NYP 167 (187)
Q Consensus 138 ~~iv-~C~~---g~rs~~aa~~L~~~G~~~v-~l~ 167 (187)
++|+ +|.. |.....+|+.|...||+.. ++.
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~ 170 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYP 170 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEc
Confidence 5787 9985 5678899999999999864 443
No 154
>PRK06917 hypothetical protein; Provisional
Probab=26.92 E-value=1.8e+02 Score=25.16 Aligned_cols=50 Identities=8% Similarity=-0.144 Sum_probs=31.2
Q ss_pred HHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHH-----CCC---Cee-EecCcHhhhhh
Q 029837 126 FVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLN-----AVS---THA-NYPSKPLTWFL 175 (187)
Q Consensus 126 ~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~-----~G~---~~v-~l~GG~~~W~~ 175 (187)
+.+.+...++.....+ +|.+|..|..+|-+|.. .|+ ..| .+.||+.+|..
T Consensus 79 lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~ 138 (447)
T PRK06917 79 LAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITM 138 (447)
T ss_pred HHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccH
Confidence 4444444455443456 99999998887766653 354 335 67788877743
No 155
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=26.85 E-value=1.4e+02 Score=26.42 Aligned_cols=47 Identities=9% Similarity=-0.089 Sum_probs=33.7
Q ss_pred CcEEEcCCChhHHHHHHHHHHCCCCeeEecCc---HhhhhhCCCceeccc
Q 029837 138 DEIIGCQSGKRSMMAATDLLNAVSTHANYPSK---PLTWFLSNQLLTEEK 184 (187)
Q Consensus 138 ~~iv~C~~g~rs~~aa~~L~~~G~~~v~l~GG---~~~W~~~g~p~~~~~ 184 (187)
.++|.|..|.-....++.|++.|++-+.++.- .+.+++.|.++..++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD 467 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGN 467 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcC
Confidence 45668888888999999999999987666532 344566666655543
No 156
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=26.24 E-value=1.3e+02 Score=29.64 Aligned_cols=34 Identities=24% Similarity=0.052 Sum_probs=28.7
Q ss_pred CcEEEcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 138 DEIIGCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 138 ~~iv~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
.-||||.+-......+..|...|+....|.||+.
T Consensus 682 sgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs 715 (1195)
T PLN03137 682 CGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMD 715 (1195)
T ss_pred CceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCC
Confidence 3345999988899999999999998778888874
No 157
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=25.93 E-value=1.7e+02 Score=23.05 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCC---CCCcEE-EcCCChhHHHHH-----HHHHHCCCCeeEe
Q 029837 124 LKFVEEVSTRFR---KHDEII-GCQSGKRSMMAA-----TDLLNAVSTHANY 166 (187)
Q Consensus 124 ~~~~~~~~~~l~---~~~~iv-~C~~g~rs~~aa-----~~L~~~G~~~v~l 166 (187)
...++.....++ ++..+| .|.+......++ ..|...||++|++
T Consensus 121 e~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v 172 (265)
T COG4822 121 EICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFV 172 (265)
T ss_pred HHHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEE
Confidence 456666666665 667778 887533322222 3566789988743
No 158
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=25.89 E-value=1.6e+02 Score=25.37 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=30.5
Q ss_pred HHHHHhhcCCCC-CcEE-EcCCChhHHHHHHHHHHC--CCCee-EecCcHhhhhh
Q 029837 126 FVEEVSTRFRKH-DEII-GCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 126 ~~~~~~~~l~~~-~~iv-~C~~g~rs~~aa~~L~~~--G~~~v-~l~GG~~~W~~ 175 (187)
+.+.+...++.. ..-| ||++|..|..+|-+|... |-..| ...||+.+|..
T Consensus 102 la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 156 (451)
T PRK06918 102 LAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTL 156 (451)
T ss_pred HHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccch
Confidence 344444334432 1246 999999988877776542 44445 67787877754
No 159
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=25.88 E-value=82 Score=20.24 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=15.0
Q ss_pred cEE-EcCCChhHHHH-HHHH----HHCCCC
Q 029837 139 EII-GCQSGKRSMMA-ATDL----LNAVST 162 (187)
Q Consensus 139 ~iv-~C~~g~rs~~a-a~~L----~~~G~~ 162 (187)
+|+ +|++|..+... ...+ .+.|..
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~ 31 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLE 31 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 577 99998765443 4444 445654
No 160
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=25.84 E-value=83 Score=22.52 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=21.8
Q ss_pred CcEE-EcCC-ChhHHHHHHHHHHCCCCee-EecCcHhhh
Q 029837 138 DEII-GCQS-GKRSMMAATDLLNAVSTHA-NYPSKPLTW 173 (187)
Q Consensus 138 ~~iv-~C~~-g~rs~~aa~~L~~~G~~~v-~l~GG~~~W 173 (187)
++|+ +|.. --||..|...|+...- .+ ....|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 4577 8864 5678888777776542 24 445566555
No 161
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=25.67 E-value=1.6e+02 Score=25.45 Aligned_cols=34 Identities=6% Similarity=0.002 Sum_probs=27.6
Q ss_pred CcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 138 DEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 138 ~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
.++| ||++-..+......|...|+....+.|++.
T Consensus 336 ~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~ 370 (475)
T PRK01297 336 ERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVP 370 (475)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 4566 999988889999999999987667777654
No 162
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=25.49 E-value=1.7e+02 Score=25.14 Aligned_cols=49 Identities=6% Similarity=-0.050 Sum_probs=30.1
Q ss_pred HHHHHhhcCCCC-CcEE-EcCCChhHHHHHHHHHHC--CCCee-EecCcHhhhh
Q 029837 126 FVEEVSTRFRKH-DEII-GCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWF 174 (187)
Q Consensus 126 ~~~~~~~~l~~~-~~iv-~C~~g~rs~~aa~~L~~~--G~~~v-~l~GG~~~W~ 174 (187)
+.+.+....+.. ..-| +|.+|..+..+|-.|... |-+.| .+.||+.+|.
T Consensus 90 lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t 143 (445)
T PRK08593 90 LAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143 (445)
T ss_pred HHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 333443334433 1345 999999988877776442 54455 6778887774
No 163
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=25.13 E-value=86 Score=23.55 Aligned_cols=30 Identities=13% Similarity=-0.057 Sum_probs=22.0
Q ss_pred EE-EcCCChhHHHHHHHHHHCCCCe--eEecCc
Q 029837 140 II-GCQSGKRSMMAATDLLNAVSTH--ANYPSK 169 (187)
Q Consensus 140 iv-~C~~g~rs~~aa~~L~~~G~~~--v~l~GG 169 (187)
++ ||-+|.-|..+|+.|...|++. +.+.++
T Consensus 70 L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 70 LAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp EEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred ehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 44 7777888999999999999964 444443
No 164
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.11 E-value=1e+02 Score=25.87 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=25.4
Q ss_pred CCCCCcEEEcCCChhHHHHHHHHHHCCCCeeE
Q 029837 134 FRKHDEIIGCQSGKRSMMAATDLLNAVSTHAN 165 (187)
Q Consensus 134 l~~~~~iv~C~~g~rs~~aa~~L~~~G~~~v~ 165 (187)
+.-++-||+|++-.|....|....++||.-.|
T Consensus 320 LqINQsIIFCNS~~rVELLAkKITelGyscyy 351 (459)
T KOG0326|consen 320 LQINQSIIFCNSTNRVELLAKKITELGYSCYY 351 (459)
T ss_pred hcccceEEEeccchHhHHHHHHHHhccchhhH
Confidence 33456677999999999999999999986433
No 165
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=24.96 E-value=1.7e+02 Score=25.25 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=31.8
Q ss_pred HHHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHC--CCCee-EecCcHhhhh
Q 029837 125 KFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWF 174 (187)
Q Consensus 125 ~~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~--G~~~v-~l~GG~~~W~ 174 (187)
++.+.+...++....-| +|++|..|..+|-.|... |-..| ...||+.+|.
T Consensus 97 ~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t 150 (433)
T PRK00615 97 LFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHA 150 (433)
T ss_pred HHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCC
Confidence 34444444454432345 999999988877776543 54455 6778888875
No 166
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=24.71 E-value=1.2e+02 Score=21.05 Aligned_cols=40 Identities=8% Similarity=-0.090 Sum_probs=28.9
Q ss_pred CCcEEEcCCChhHHHHHHHHHHCCCCee-EecCcHhhhhhC
Q 029837 137 HDEIIGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS 176 (187)
Q Consensus 137 ~~~iv~C~~g~rs~~aa~~L~~~G~~~v-~l~GG~~~W~~~ 176 (187)
+.+|+++..|.-...++..|...|..++ .+++..-.+.+-
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl 42 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNL 42 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeeccc
Confidence 3456677778888999999999999988 677666555443
No 167
>PF11181 YflT: Heat induced stress protein YflT
Probab=24.21 E-value=1.2e+02 Score=20.19 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=14.4
Q ss_pred EE-EcCCChhHHHHHHHHHHCCCC
Q 029837 140 II-GCQSGKRSMMAATDLLNAVST 162 (187)
Q Consensus 140 iv-~C~~g~rs~~aa~~L~~~G~~ 162 (187)
+| ...+...+..+...|+..||.
T Consensus 2 ~Igv~~~~~E~~~~I~~L~~~Gy~ 25 (103)
T PF11181_consen 2 VIGVYDNEEEALSAIEELKAQGYS 25 (103)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCC
Confidence 45 555555666667777777773
No 168
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=24.11 E-value=1.9e+02 Score=24.53 Aligned_cols=49 Identities=6% Similarity=-0.113 Sum_probs=29.2
Q ss_pred HHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHC-----C---CCee-EecCcHhhhh
Q 029837 126 FVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNA-----V---STHA-NYPSKPLTWF 174 (187)
Q Consensus 126 ~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~-----G---~~~v-~l~GG~~~W~ 174 (187)
+.+.+....+..-.-| +|.+|..|..+|-++... | -+.| ...||+.+|.
T Consensus 90 la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t 148 (423)
T PRK05964 90 LAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDT 148 (423)
T ss_pred HHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 3344433344333346 999998888777665432 3 3445 6778887764
No 169
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=23.55 E-value=1.9e+02 Score=25.04 Aligned_cols=50 Identities=8% Similarity=-0.047 Sum_probs=30.7
Q ss_pred HHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHC-----CC---Cee-EecCcHhhhhh
Q 029837 126 FVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNA-----VS---THA-NYPSKPLTWFL 175 (187)
Q Consensus 126 ~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~-----G~---~~v-~l~GG~~~W~~ 175 (187)
+.+.+...++..-.-| ||++|..+..+|-.|... |+ ..| .+.||+.+|..
T Consensus 104 lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~ 163 (460)
T PRK06916 104 LAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTI 163 (460)
T ss_pred HHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccH
Confidence 4444444454432356 999999988877666543 54 334 67787777643
No 170
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=23.46 E-value=72 Score=21.99 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=13.0
Q ss_pred HHHHHHHHC-C-CEEEecCChh
Q 029837 78 RVAHELLQA-G-HRYLDVRTPE 97 (187)
Q Consensus 78 ~~~~~~l~~-~-~~iIDvR~~~ 97 (187)
+++.+++.. + .+|||||...
T Consensus 3 e~f~~~l~~~~i~~lVDVR~~P 24 (122)
T PF04343_consen 3 ERFYDLLKKNGIRVLVDVRLWP 24 (122)
T ss_pred HHHHHHHHHCCCeEEEEECCCC
Confidence 455555544 4 6899999643
No 171
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=23.42 E-value=1.4e+02 Score=21.89 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=28.9
Q ss_pred CEEEecCChh---h---hccccCCCcEEeCcccccCCCCCCCHHHHHHHhhc-CC-CCCcEE-EcCCC-hhHHHHHHHHH
Q 029837 88 HRYLDVRTPE---E---FSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FR-KHDEII-GCQSG-KRSMMAATDLL 157 (187)
Q Consensus 88 ~~iIDvR~~~---e---~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~-l~-~~~~iv-~C~~g-~rs~~aa~~L~ 157 (187)
..||.+|+.. + |...+--.-++++............++.+.+.+.. ++ ...+|+ +|.+| .|.-.++..|+
T Consensus 34 KTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lR 113 (164)
T PF03162_consen 34 KTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLR 113 (164)
T ss_dssp SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHH
Confidence 4677777642 2 22222224445554321111122234455554443 33 457899 99986 45555555554
Q ss_pred H-CCCC
Q 029837 158 N-AVST 162 (187)
Q Consensus 158 ~-~G~~ 162 (187)
. +|..
T Consensus 114 k~Q~W~ 119 (164)
T PF03162_consen 114 KLQGWS 119 (164)
T ss_dssp HHTTB-
T ss_pred HHcCCC
Confidence 3 5654
No 172
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.27 E-value=2.7e+02 Score=20.26 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=24.9
Q ss_pred CCCCCcEE-EcCC-C-hh--HHHHHHHHHHCCCCeeE-ecCcHh
Q 029837 134 FRKHDEII-GCQS-G-KR--SMMAATDLLNAVSTHAN-YPSKPL 171 (187)
Q Consensus 134 l~~~~~iv-~C~~-g-~r--s~~aa~~L~~~G~~~v~-l~GG~~ 171 (187)
+..+..+| .|.- | .. ...+.+.|+++|.+.+. +.||..
T Consensus 60 ~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvi 103 (143)
T COG2185 60 VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVI 103 (143)
T ss_pred HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCcc
Confidence 44666777 7764 2 22 55677788888888874 667653
No 173
>PRK07481 hypothetical protein; Provisional
Probab=23.07 E-value=1.8e+02 Score=25.01 Aligned_cols=50 Identities=14% Similarity=0.027 Sum_probs=30.6
Q ss_pred HHHHHhhcCC-CCCcEE-EcCCChhHHHHHHHHHHC--------CCCee-EecCcHhhhhh
Q 029837 126 FVEEVSTRFR-KHDEII-GCQSGKRSMMAATDLLNA--------VSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 126 ~~~~~~~~l~-~~~~iv-~C~~g~rs~~aa~~L~~~--------G~~~v-~l~GG~~~W~~ 175 (187)
+.+.+...++ .+-.-| +|.+|..|..+|-+|... |-..| .+.||+.+|..
T Consensus 91 lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ 151 (449)
T PRK07481 91 LSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHF 151 (449)
T ss_pred HHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcch
Confidence 4444444342 233456 999998888777666442 33345 67888888764
No 174
>PRK06062 hypothetical protein; Provisional
Probab=23.05 E-value=1.9e+02 Score=24.91 Aligned_cols=49 Identities=6% Similarity=-0.145 Sum_probs=30.4
Q ss_pred HHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHC--CCCee-EecCcHhhhh
Q 029837 126 FVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWF 174 (187)
Q Consensus 126 ~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~--G~~~v-~l~GG~~~W~ 174 (187)
+.+.+....+.+-.-| +|.+|..|..+|-+|... |-..| ...||+.+|.
T Consensus 100 lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 152 (451)
T PRK06062 100 AARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGT 152 (451)
T ss_pred HHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCC
Confidence 3344433344333346 999999988887776543 54445 6777777764
No 175
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=22.83 E-value=1.4e+02 Score=20.60 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=10.0
Q ss_pred EE-EcCC-ChhHHHHHHHHHHCC
Q 029837 140 II-GCQS-GKRSMMAATDLLNAV 160 (187)
Q Consensus 140 iv-~C~~-g~rs~~aa~~L~~~G 160 (187)
|+ +|.. --||..|...|+.++
T Consensus 3 vlfvC~~N~cRS~mAEa~~~~~~ 25 (126)
T TIGR02689 3 VMFVCKRNSCRSQMAEGFAKTLG 25 (126)
T ss_pred EEEEcCCcHHHHHHHHHHHHHhc
Confidence 44 5543 344555555555443
No 176
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=22.63 E-value=2e+02 Score=20.99 Aligned_cols=43 Identities=12% Similarity=0.024 Sum_probs=28.8
Q ss_pred HHhhcCCCCCcEE-EcCCChh--HHHHHHHHHH---CCCCee-EecCcHhhh
Q 029837 129 EVSTRFRKHDEII-GCQSGKR--SMMAATDLLN---AVSTHA-NYPSKPLTW 173 (187)
Q Consensus 129 ~~~~~l~~~~~iv-~C~~g~r--s~~aa~~L~~---~G~~~v-~l~GG~~~W 173 (187)
.....++ +..+| .+..|.. |...|..|.. .| .++ .+.||-.++
T Consensus 58 ~il~~~~-~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~ 107 (153)
T TIGR00246 58 RILAAIG-KAHVVTLDIPGKPWTTPQLADTLEKWKTDG-RDVTLLIGGPEGL 107 (153)
T ss_pred HHHHhCC-CCeEEEEcCCCCcCCHHHHHHHHHHHhccC-CeEEEEEcCCCcC
Confidence 3444566 46677 7777744 8888888874 45 456 788886554
No 177
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=22.19 E-value=2.1e+02 Score=24.85 Aligned_cols=50 Identities=10% Similarity=-0.041 Sum_probs=30.7
Q ss_pred HHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHC--CCCee-EecCcHhhhhh
Q 029837 126 FVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 126 ~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~--G~~~v-~l~GG~~~W~~ 175 (187)
+.+.+...++....-| +|++|..|..+|-+|... |-+.| ...||+.+|..
T Consensus 101 lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 154 (457)
T PRK05639 101 VAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTL 154 (457)
T ss_pred HHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccH
Confidence 3444444344332346 999999988887776552 43445 66787777653
No 178
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=22.17 E-value=3e+02 Score=20.28 Aligned_cols=45 Identities=13% Similarity=-0.133 Sum_probs=29.9
Q ss_pred HHHHhhcCCCCCcEE-EcCCC--hhHHHHHHHHHH---CCCCee-EecCcHhh
Q 029837 127 VEEVSTRFRKHDEII-GCQSG--KRSMMAATDLLN---AVSTHA-NYPSKPLT 172 (187)
Q Consensus 127 ~~~~~~~l~~~~~iv-~C~~g--~rs~~aa~~L~~---~G~~~v-~l~GG~~~ 172 (187)
-+.....++++..+| ..-.| ..|...|..|.. .| .++ .+.||-.+
T Consensus 57 ~~~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G-~~i~f~IGG~~G 108 (155)
T COG1576 57 GEAILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDG-RDISFLIGGADG 108 (155)
T ss_pred HHHHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcC-CeEEEEEeCccc
Confidence 334455688888888 55555 448888887764 57 666 67787554
No 179
>PRK10537 voltage-gated potassium channel; Provisional
Probab=21.99 E-value=4.5e+02 Score=22.41 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=23.9
Q ss_pred CcEEEcCCChhHHHHHHHHHHCCCCeeEec
Q 029837 138 DEIIGCQSGKRSMMAATDLLNAVSTHANYP 167 (187)
Q Consensus 138 ~~iv~C~~g~rs~~aa~~L~~~G~~~v~l~ 167 (187)
..+|+|+.|..+..+++.|++.|++-+.++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId 270 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIV 270 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEE
Confidence 445599999889999999999998765544
No 180
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=21.88 E-value=2.2e+02 Score=24.39 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=30.1
Q ss_pred HHHHHhhcCCCC--CcEEEcCCChhHHHHHHHHHHC--CCCee-EecCcHhhhh
Q 029837 126 FVEEVSTRFRKH--DEIIGCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWF 174 (187)
Q Consensus 126 ~~~~~~~~l~~~--~~iv~C~~g~rs~~aa~~L~~~--G~~~v-~l~GG~~~W~ 174 (187)
+.+.+...++.. .++.+|.+|..+..+|-+|... |-..| ...||+.+|.
T Consensus 88 la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (425)
T PRK07495 88 LAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRT 141 (425)
T ss_pred HHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCcc
Confidence 344444434432 3444999999988877766542 54455 6778777764
No 181
>PRK10126 tyrosine phosphatase; Provisional
Probab=21.73 E-value=99 Score=22.12 Aligned_cols=35 Identities=17% Similarity=-0.011 Sum_probs=21.8
Q ss_pred CcEE-EcCC-ChhHHHHHHHHHHCCCCee-EecCcHhhh
Q 029837 138 DEII-GCQS-GKRSMMAATDLLNAVSTHA-NYPSKPLTW 173 (187)
Q Consensus 138 ~~iv-~C~~-g~rs~~aa~~L~~~G~~~v-~l~GG~~~W 173 (187)
.+|+ +|.. --||..|...|+..+- .+ +..-|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 4677 8865 4678888777777653 24 344565544
No 182
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=21.64 E-value=1.9e+02 Score=24.80 Aligned_cols=31 Identities=3% Similarity=0.059 Sum_probs=24.6
Q ss_pred CCCcEEEcCCChhHHHHHHHHHHCCCCeeEe
Q 029837 136 KHDEIIGCQSGKRSMMAATDLLNAVSTHANY 166 (187)
Q Consensus 136 ~~~~iv~C~~g~rs~~aa~~L~~~G~~~v~l 166 (187)
.++++++.+.|..+..++..|...|+.++++
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~~~I~V 210 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAPKQIML 210 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEE
Confidence 3455556677999999999999999988754
No 183
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.63 E-value=1.8e+02 Score=25.03 Aligned_cols=38 Identities=11% Similarity=0.067 Sum_probs=29.9
Q ss_pred CCCCCcEEEcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 134 FRKHDEIIGCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 134 l~~~~~iv~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
+.=++.||+|.+-..+......|...||+.-.+.|-+.
T Consensus 328 ~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~ 365 (477)
T KOG0332|consen 328 LTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLT 365 (477)
T ss_pred hhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccch
Confidence 44456677999888888999999999998657777654
No 184
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=21.48 E-value=2.2e+02 Score=24.38 Aligned_cols=49 Identities=8% Similarity=-0.074 Sum_probs=29.1
Q ss_pred HHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHC-------CCCee-EecCcHhhhh
Q 029837 126 FVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNA-------VSTHA-NYPSKPLTWF 174 (187)
Q Consensus 126 ~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~-------G~~~v-~l~GG~~~W~ 174 (187)
+.+++....+.+-.-| +|.+|..|..+|-+|... |-..+ ...||+.+|.
T Consensus 91 la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t 148 (428)
T PRK07986 91 LCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDT 148 (428)
T ss_pred HHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCc
Confidence 3344443344333456 999998888777665432 33344 6778777654
No 185
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.47 E-value=1.6e+02 Score=20.71 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=26.7
Q ss_pred HHHHHHHhhc--CCCCCcEE-EcCCChh--HHHHHHHHHHCCCCeeEec
Q 029837 124 LKFVEEVSTR--FRKHDEII-GCQSGKR--SMMAATDLLNAVSTHANYP 167 (187)
Q Consensus 124 ~~~~~~~~~~--l~~~~~iv-~C~~g~r--s~~aa~~L~~~G~~~v~l~ 167 (187)
+.+.+.+... +.+++-+| +..+|.. ...++...+++|...|.+.
T Consensus 89 ~~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 89 EGFARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp GTHHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3455555444 66788888 9998765 4567788889998766543
No 186
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.43 E-value=2e+02 Score=25.61 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=29.8
Q ss_pred CCCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHh
Q 029837 136 KHDEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPL 171 (187)
Q Consensus 136 ~~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~ 171 (187)
++.++| ||.+-..+...+..|+..||..+.+.|...
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~s 376 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKS 376 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcCcceeeeccccc
Confidence 445677 999988899999999999998888887653
No 187
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=21.09 E-value=1.8e+02 Score=27.14 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=31.0
Q ss_pred CCCCCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCc
Q 029837 134 FRKHDEII-GCQSGKRSMMAATDLLNAVSTHANYPSK 169 (187)
Q Consensus 134 l~~~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG 169 (187)
..++++++ +|.+-..|...+..|.+.|+....+.+.
T Consensus 402 ~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~ 438 (745)
T TIGR00963 402 HAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK 438 (745)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC
Confidence 45788999 9999888999999999999987777665
No 188
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=21.05 E-value=2.3e+02 Score=21.73 Aligned_cols=39 Identities=5% Similarity=-0.080 Sum_probs=22.6
Q ss_pred HHHHHhhcC--CCCCc-EE-EcCCChhHHHHHHHHHHCCCCeeEecC
Q 029837 126 FVEEVSTRF--RKHDE-II-GCQSGKRSMMAATDLLNAVSTHANYPS 168 (187)
Q Consensus 126 ~~~~~~~~l--~~~~~-iv-~C~~g~rs~~aa~~L~~~G~~~v~l~G 168 (187)
.+......+ ++..+ ++ -|..|..+. .|.++||+.+-++-
T Consensus 22 ~l~~~~~~l~~~~~~rvLd~GCG~G~da~----~LA~~G~~V~gvD~ 64 (213)
T TIGR03840 22 LLVKHWPALGLPAGARVFVPLCGKSLDLA----WLAEQGHRVLGVEL 64 (213)
T ss_pred HHHHHHHhhCCCCCCeEEEeCCCchhHHH----HHHhCCCeEEEEeC
Confidence 454444443 34444 45 888886543 44578998665553
No 189
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=20.99 E-value=1.1e+02 Score=21.05 Aligned_cols=27 Identities=15% Similarity=0.409 Sum_probs=22.8
Q ss_pred CcccCHHHHHHHHHCC--CEEEecCChhh
Q 029837 72 PTSVPVRVAHELLQAG--HRYLDVRTPEE 98 (187)
Q Consensus 72 ~~~v~~~~~~~~l~~~--~~iIDvR~~~e 98 (187)
..-|+-+++.+++.++ +.|+|..+-++
T Consensus 17 S~YITLedi~~lV~~g~~f~V~DakTgeD 45 (107)
T TIGR01848 17 SSYVTLEDIRDLVREGREFQVVDSKSGDD 45 (107)
T ss_pred cceeeHHHHHHHHHCCCeEEEEECCCCch
Confidence 3468999999999887 89999998665
No 190
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=20.95 E-value=2e+02 Score=27.53 Aligned_cols=39 Identities=15% Similarity=0.028 Sum_probs=33.1
Q ss_pred CCCCCcEE-EcCCChhHHHHHHHHHHCCCCeeEecCcHhh
Q 029837 134 FRKHDEII-GCQSGKRSMMAATDLLNAVSTHANYPSKPLT 172 (187)
Q Consensus 134 l~~~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~GG~~~ 172 (187)
..++++|+ .|.+-..|...+..|...|+....|.+....
T Consensus 441 ~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q 480 (896)
T PRK13104 441 GVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHE 480 (896)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCCh
Confidence 45788999 9999899999999999999988777766543
No 191
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=20.64 E-value=1.6e+02 Score=25.69 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=25.7
Q ss_pred CCcEE-EcCCChhHHHHHHHHHHCCCCee--EecCcHh
Q 029837 137 HDEII-GCQSGKRSMMAATDLLNAVSTHA--NYPSKPL 171 (187)
Q Consensus 137 ~~~iv-~C~~g~rs~~aa~~L~~~G~~~v--~l~GG~~ 171 (187)
..+++ .+.+|..|..+++.+++.|++.. +++-|..
T Consensus 177 ~gk~lvllSGGiDS~va~~~~~krG~~v~~l~f~~g~~ 214 (482)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMRRGSRVHYCFFNLGGA 214 (482)
T ss_pred cCeEEEEEcCCchHHHHHHHHHHcCCEEEEEEEecCCc
Confidence 45666 77889999999999999998654 4444433
No 192
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=20.53 E-value=2.4e+02 Score=24.32 Aligned_cols=49 Identities=12% Similarity=-0.071 Sum_probs=29.1
Q ss_pred HHHHHhhcCCCCCcEE-EcCCChhHHHHHHHHHHC--------CCCee-EecCcHhhhh
Q 029837 126 FVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNA--------VSTHA-NYPSKPLTWF 174 (187)
Q Consensus 126 ~~~~~~~~l~~~~~iv-~C~~g~rs~~aa~~L~~~--------G~~~v-~l~GG~~~W~ 174 (187)
+.+.+....+.+-.-| +|.+|..|..+|-+|... |-.+| ...||+.+|.
T Consensus 94 la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 152 (442)
T PRK13360 94 LANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVG 152 (442)
T ss_pred HHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 3334433344333456 999998888777665432 22345 6778887774
No 193
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=20.39 E-value=1.6e+02 Score=22.05 Aligned_cols=30 Identities=0% Similarity=-0.069 Sum_probs=23.8
Q ss_pred CcEEEcCCChhHHHHHHHHHHCCCCee-Eec
Q 029837 138 DEIIGCQSGKRSMMAATDLLNAVSTHA-NYP 167 (187)
Q Consensus 138 ~~iv~C~~g~rs~~aa~~L~~~G~~~v-~l~ 167 (187)
.+||.|.....-..++..++..||.++ ++.
T Consensus 73 spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~ 103 (187)
T COG3620 73 SPVVSVSPDDSISDVVNLMRDKGISQLPVIE 103 (187)
T ss_pred CCeeEECchhhHHHHHHHHHHcCCccCceee
Confidence 467788877777889999999999886 554
No 194
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=20.28 E-value=2.6e+02 Score=18.26 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=24.3
Q ss_pred CCcEE-EcCCChhHHHHHHHHHHCCCCeeEec
Q 029837 137 HDEII-GCQSGKRSMMAATDLLNAVSTHANYP 167 (187)
Q Consensus 137 ~~~iv-~C~~g~rs~~aa~~L~~~G~~~v~l~ 167 (187)
+-+|+ -|..|.-+..+-..|..+|.+.+.+.
T Consensus 21 ~~kivvD~~~G~~~~~~~~ll~~lg~~~~~~n 52 (104)
T PF02879_consen 21 GLKIVVDCMNGAGSDILPRLLERLGCDVIELN 52 (104)
T ss_dssp TCEEEEE-TTSTTHHHHHHHHHHTTCEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCcEEEEe
Confidence 34788 88889999999999999999766443
No 195
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=20.18 E-value=2e+02 Score=24.68 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=45.1
Q ss_pred HHHHHHHHCC--CEEEecCChhhh--ccccCCCcEEeCcccccCCCCCCCHHHHHHHhhcCCCCCcEE-EcCCChhHHHH
Q 029837 78 RVAHELLQAG--HRYLDVRTPEEF--SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMA 152 (187)
Q Consensus 78 ~~~~~~l~~~--~~iIDvR~~~e~--~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~iv-~C~~g~rs~~a 152 (187)
..++.++. + +.|+|=+.+.+- +.|+. .+++ .-+.+.+....+..+-.++ ||..|.-+..+
T Consensus 121 S~V~~Ll~-g~dVYl~DW~~p~~vp~~~~~f------~ldD--------Yi~~l~~~i~~~G~~v~l~GvCqgG~~~laa 185 (406)
T TIGR01849 121 STVEALLP-DHDVYITDWVNARMVPLSAGKF------DLED--------YIDYLIEFIRFLGPDIHVIAVCQPAVPVLAA 185 (406)
T ss_pred HHHHHHhC-CCcEEEEeCCCCCCCchhcCCC------CHHH--------HHHHHHHHHHHhCCCCcEEEEchhhHHHHHH
Confidence 34555565 5 778887765422 12332 2220 0012333333455667899 99999999988
Q ss_pred HHHHHHCCC----CeeEecCc
Q 029837 153 ATDLLNAVS----THANYPSK 169 (187)
Q Consensus 153 a~~L~~~G~----~~v~l~GG 169 (187)
+..+.+.|. .++.+.||
T Consensus 186 ~Al~a~~~~p~~~~sltlm~~ 206 (406)
T TIGR01849 186 VALMAENEPPAQPRSMTLMGG 206 (406)
T ss_pred HHHHHhcCCCCCcceEEEEec
Confidence 888888885 33445455
No 196
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=20.06 E-value=1.5e+02 Score=21.49 Aligned_cols=29 Identities=17% Similarity=-0.062 Sum_probs=21.3
Q ss_pred CCCcEE-EcCC--C-hhHHHHHHHHHHCCCCee
Q 029837 136 KHDEII-GCQS--G-KRSMMAATDLLNAVSTHA 164 (187)
Q Consensus 136 ~~~~iv-~C~~--g-~rs~~aa~~L~~~G~~~v 164 (187)
..++|. +..| - ..|.++...|++.||+.+
T Consensus 15 ~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi 47 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI 47 (140)
T ss_pred hCceEEEEecCCCCCccHHHHHHHHHHCCCEEE
Confidence 445655 5544 3 349999999999999876
No 197
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=20.01 E-value=2.3e+02 Score=24.21 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=30.5
Q ss_pred HHHHHhhcCCCCCcEEEcCCChhHHHHHHHHHHC--CCCee-EecCcHhhhhh
Q 029837 126 FVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNA--VSTHA-NYPSKPLTWFL 175 (187)
Q Consensus 126 ~~~~~~~~l~~~~~iv~C~~g~rs~~aa~~L~~~--G~~~v-~l~GG~~~W~~ 175 (187)
+.+.+...++.-.++.+|++|..|..+|-+|... |-+.| .+.||+.+|..
T Consensus 98 la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 150 (428)
T PRK12389 98 FAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSD 150 (428)
T ss_pred HHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChH
Confidence 3333333344323333999999988887776553 54455 67788877643
Done!