Query 029839
Match_columns 187
No_of_seqs 115 out of 684
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 06:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3efo_B SEC24 related gene fami 100.0 6.2E-52 2.1E-56 391.2 16.7 179 7-187 19-213 (770)
2 3eh2_A Protein transport prote 100.0 8.5E-52 2.9E-56 390.1 16.7 179 7-187 15-209 (766)
3 1pcx_A Protein transport prote 100.0 1.8E-46 6.1E-51 355.7 13.9 161 24-186 50-222 (810)
4 1m2v_B SEC24, protein transpor 100.0 3E-46 1E-50 357.4 13.4 161 24-186 166-338 (926)
5 3eh1_A Protein transport prote 100.0 5.6E-45 1.9E-49 343.0 12.4 150 31-187 34-196 (751)
6 2nut_A Protein transport prote 100.0 5E-39 1.7E-43 303.4 7.6 149 25-187 6-165 (769)
7 1m2o_A SEC23, protein transpor 100.0 2E-37 6.8E-42 292.5 10.3 140 34-187 6-154 (768)
8 2yrc_A Protein transport prote 99.4 4.1E-14 1.4E-18 92.8 2.4 36 85-120 6-43 (59)
9 2a20_A Regulating synaptic mem 86.5 0.15 5E-06 32.8 0.2 27 88-118 33-59 (62)
10 1pft_A TFIIB, PFTFIIBN; N-term 82.9 2.4 8.1E-05 25.5 4.6 29 87-118 4-32 (50)
11 1gh9_A 8.3 kDa protein (gene M 81.8 0.69 2.4E-05 30.7 1.9 26 87-118 3-28 (71)
12 4gat_A Nitrogen regulatory pro 80.3 0.46 1.6E-05 31.1 0.6 32 86-118 7-38 (66)
13 2vut_I AREA, nitrogen regulato 76.0 0.45 1.5E-05 28.5 -0.4 30 88-118 1-30 (43)
14 2csz_A Synaptotagmin-like prot 69.7 1.9 6.3E-05 29.0 1.5 31 88-118 42-72 (76)
15 1vq8_Z 50S ribosomal protein L 69.5 3.2 0.00011 28.2 2.7 28 87-118 26-53 (83)
16 3rag_A Uncharacterized protein 69.5 4 0.00014 33.2 3.7 34 150-185 133-166 (242)
17 2hgo_A CASSIICOLIN; toxin, dis 66.8 2.3 7.7E-05 22.2 1.1 26 90-116 2-27 (27)
18 2avu_E Flagellar transcription 66.5 1.4 4.7E-05 34.7 0.3 31 85-118 131-162 (192)
19 4fx5_A VON willebrand factor t 65.9 7.6 0.00026 34.1 5.1 36 150-186 76-113 (464)
20 3j20_Y 30S ribosomal protein S 65.6 3.2 0.00011 25.4 1.9 25 88-118 19-45 (50)
21 1gnf_A Transcription factor GA 63.7 0.65 2.2E-05 28.2 -1.6 31 87-118 3-33 (46)
22 4hc9_A Trans-acting T-cell-spe 63.3 1.2 4E-05 32.2 -0.6 32 86-118 3-34 (115)
23 2zet_C Melanophilin; complex, 61.4 2 6.7E-05 32.6 0.3 33 86-118 83-116 (153)
24 6rxn_A Rubredoxin; electron tr 60.5 1.3 4.4E-05 26.8 -0.6 30 89-118 5-38 (46)
25 1zbd_B Rabphilin-3A; G protein 59.0 4.7 0.00016 29.7 2.1 32 87-118 71-106 (134)
26 1s24_A Rubredoxin 2; electron 57.8 1.7 5.7E-05 30.0 -0.5 34 86-119 33-77 (87)
27 1yuz_A Nigerythrin; rubrythrin 55.0 3.6 0.00012 32.3 0.9 26 87-119 170-195 (202)
28 1yk4_A Rubredoxin, RD; electro 51.3 2.1 7.3E-05 26.4 -0.8 9 110-118 35-43 (52)
29 3dfx_A Trans-acting T-cell-spe 49.7 1.4 4.7E-05 28.5 -1.9 32 86-118 5-36 (63)
30 1dx8_A Rubredoxin; electron tr 48.7 2.8 9.6E-05 27.6 -0.6 32 88-119 7-49 (70)
31 1e8j_A Rubredoxin; iron-sulfur 48.2 2.2 7.4E-05 26.4 -1.1 9 110-118 36-44 (52)
32 1x0t_A Ribonuclease P protein 46.8 11 0.00036 27.2 2.2 30 89-118 66-102 (120)
33 4rxn_A Rubredoxin; electron tr 45.5 3.3 0.00011 25.9 -0.6 9 110-118 36-44 (54)
34 2k3r_A Ribonuclease P protein 43.9 11 0.00039 27.2 2.0 30 89-118 61-97 (123)
35 2jny_A Uncharacterized BCR; st 43.3 17 0.00059 23.5 2.6 29 86-118 8-36 (67)
36 2js4_A UPF0434 protein BB2007; 43.2 17 0.00058 23.7 2.6 28 87-118 7-34 (70)
37 2v3b_B Rubredoxin 2, rubredoxi 43.1 3.2 0.00011 25.9 -0.9 9 110-118 36-44 (55)
38 2kdx_A HYPA, hydrogenase/ureas 42.6 7.8 0.00027 27.5 1.0 30 86-121 71-101 (119)
39 2kn9_A Rubredoxin; metalloprot 41.2 3.4 0.00012 28.0 -1.1 10 110-119 60-69 (81)
40 4hc9_A Trans-acting T-cell-spe 40.2 5.8 0.0002 28.5 -0.1 32 86-118 57-88 (115)
41 3hrz_D Complement factor B; se 39.5 18 0.00062 32.8 3.1 35 150-185 242-276 (741)
42 2jr6_A UPF0434 protein NMA0874 39.3 22 0.00074 23.0 2.7 28 87-118 7-34 (68)
43 2x5r_A Hypothetical protein OR 38.8 17 0.00059 25.2 2.2 33 86-118 75-111 (127)
44 3j21_g 50S ribosomal protein L 38.7 11 0.00036 23.2 1.0 29 86-122 12-40 (51)
45 2l4z_A DNA endonuclease RBBP8, 38.2 21 0.00071 25.4 2.7 33 86-118 59-96 (123)
46 2gmg_A Hypothetical protein PF 37.9 5.5 0.00019 28.3 -0.5 29 87-120 66-94 (105)
47 3j20_W 30S ribosomal protein S 37.9 19 0.00065 23.1 2.1 28 88-118 15-42 (63)
48 2hf1_A Tetraacyldisaccharide-1 37.7 21 0.0007 23.1 2.3 28 87-118 7-34 (68)
49 1qxf_A GR2, 30S ribosomal prot 37.4 19 0.00066 23.3 2.1 27 89-118 8-34 (66)
50 1m3v_A FLIN4, fusion of the LI 37.1 19 0.00064 25.3 2.3 12 88-99 5-16 (122)
51 3a43_A HYPD, hydrogenase nicke 36.3 8.6 0.00029 28.3 0.3 14 86-99 68-81 (139)
52 2iyb_E Testin, TESS, TES; LIM 35.3 39 0.0013 20.6 3.4 30 89-118 3-40 (65)
53 1a7i_A QCRP2 (LIM1); LIM domai 33.4 30 0.001 22.1 2.7 32 87-118 6-42 (81)
54 1vd4_A Transcription initiatio 33.3 13 0.00045 22.4 0.8 34 86-119 12-48 (62)
55 1twf_I B12.6, DNA-directed RNA 32.4 7.4 0.00025 28.0 -0.6 31 88-118 4-34 (122)
56 2kae_A GATA-type transcription 32.2 3.4 0.00012 27.3 -2.2 33 86-118 6-38 (71)
57 1rfh_A RAS association (ralgds 31.7 29 0.00099 21.4 2.2 26 85-118 19-44 (59)
58 2akl_A PHNA-like protein PA012 31.6 22 0.00075 26.2 1.9 28 86-118 25-52 (138)
59 2epr_A POZ-, at HOOK-, and zin 31.1 3 0.0001 23.8 -2.5 33 86-118 10-48 (48)
60 1dl6_A Transcription factor II 30.0 19 0.00064 22.4 1.1 28 88-118 11-38 (58)
61 2dj7_A Actin-binding LIM prote 29.8 29 0.00098 22.4 2.1 33 86-118 13-50 (80)
62 2d8z_A Four and A half LIM dom 29.6 37 0.0013 20.8 2.6 32 86-118 3-39 (70)
63 1iml_A CRIP, cysteine rich int 29.6 28 0.00096 21.9 2.0 10 90-99 2-11 (76)
64 2elx_A Zinc finger protein 406 29.4 20 0.00069 18.0 1.1 11 108-118 5-15 (35)
65 2kvh_A Zinc finger and BTB dom 29.2 18 0.00062 17.0 0.8 9 110-118 3-11 (27)
66 1nui_A DNA primase/helicase; z 29.1 33 0.0011 27.1 2.7 28 88-118 14-41 (255)
67 2k4x_A 30S ribosomal protein S 28.3 22 0.00075 21.9 1.2 28 88-119 18-45 (55)
68 2pk7_A Uncharacterized protein 28.3 30 0.001 22.4 1.9 28 87-118 7-34 (69)
69 1j2o_A FLIN2, fusion of rhombo 28.2 35 0.0012 23.5 2.4 31 88-118 3-38 (114)
70 3h0g_L DNA-directed RNA polyme 27.9 21 0.00071 22.9 1.0 27 88-119 21-47 (63)
71 1srk_A Zinc finger protein ZFP 27.5 24 0.00081 17.8 1.1 11 108-118 5-15 (35)
72 2fnf_X Putative RAS effector N 27.2 26 0.00089 22.6 1.5 25 86-118 33-57 (72)
73 1x4l_A Skeletal muscle LIM-pro 26.8 41 0.0014 20.8 2.4 32 87-118 4-43 (72)
74 2lcq_A Putative toxin VAPC6; P 26.7 19 0.00065 26.7 0.8 26 88-119 132-157 (165)
75 2xzm_6 RPS27E; ribosome, trans 25.6 34 0.0012 23.0 1.9 28 88-118 32-59 (81)
76 1x61_A Thyroid receptor intera 25.4 41 0.0014 20.7 2.2 33 86-118 3-41 (72)
77 2fc7_A ZZZ3 protein; structure 25.3 35 0.0012 22.7 1.9 24 88-118 21-44 (82)
78 3k6s_A Integrin alpha-X; cell 25.0 70 0.0024 31.2 4.6 36 150-186 129-164 (1095)
79 2emi_A Zinc finger protein 484 24.9 17 0.00059 19.9 0.2 12 107-118 9-20 (46)
80 2lri_C Autoimmune regulator; Z 24.5 14 0.00048 23.6 -0.3 33 86-118 22-58 (66)
81 2epv_A Zinc finger protein 268 24.2 21 0.00072 19.4 0.5 12 107-118 9-20 (44)
82 2riq_A Poly [ADP-ribose] polym 23.9 34 0.0012 25.9 1.8 23 86-114 76-98 (160)
83 2j9u_B VPS36, vacuolar protein 23.8 22 0.00076 23.6 0.6 13 108-120 15-27 (76)
84 2lvu_A Zinc finger and BTB dom 29.5 17 0.00057 17.0 0.0 10 110-119 2-11 (26)
85 2elt_A Zinc finger protein 406 23.7 29 0.00098 17.5 1.0 11 108-118 7-17 (36)
86 1x64_A Alpha-actinin-2 associa 23.6 99 0.0034 19.9 4.0 32 86-118 23-59 (89)
87 2gnr_A Conserved hypothetical 23.6 31 0.0011 25.4 1.5 26 86-119 45-70 (145)
88 2elq_A Zinc finger protein 406 23.6 29 0.00098 17.6 1.0 11 108-118 7-17 (36)
89 2co8_A NEDD9 interacting prote 23.6 27 0.00091 22.6 1.0 33 86-118 13-50 (82)
90 2eml_A Zinc finger protein 28 23.2 21 0.00072 19.5 0.4 12 107-118 9-20 (46)
91 2kvf_A Zinc finger and BTB dom 23.2 27 0.00091 16.4 0.8 9 110-118 3-11 (28)
92 2els_A Zinc finger protein 406 23.1 29 0.001 17.6 1.0 11 108-118 7-17 (36)
93 1x5w_A Zinc finger protein 64, 22.7 23 0.00078 21.4 0.5 33 86-118 7-45 (70)
94 2m0f_A Zinc finger and BTB dom 22.3 26 0.00089 16.4 0.6 9 110-118 2-10 (29)
95 3h0g_I DNA-directed RNA polyme 22.2 14 0.00049 26.1 -0.6 31 88-118 4-34 (113)
96 1weq_A PHD finger protein 7; s 22.2 22 0.00074 24.2 0.3 34 85-118 43-78 (85)
97 2elp_A Zinc finger protein 406 21.8 34 0.0012 17.4 1.1 11 108-118 7-17 (37)
98 1fp0_A KAP-1 corepressor; PHD 21.6 29 0.00098 23.6 0.8 33 86-119 35-72 (88)
99 4bbr_M Transcription initiatio 21.6 41 0.0014 28.2 2.0 30 88-118 21-50 (345)
100 2elv_A Zinc finger protein 406 21.6 36 0.0012 17.2 1.1 11 108-118 7-17 (36)
101 3m7n_A Putative uncharacterize 21.4 42 0.0014 25.4 1.9 27 88-120 140-166 (179)
102 1rik_A E6APC1 peptide; E6-bind 21.4 31 0.0011 16.2 0.8 9 110-118 2-10 (29)
103 1nyp_A Pinch protein; LIM doma 21.3 52 0.0018 19.9 2.0 31 87-118 4-39 (66)
104 2em4_A Zinc finger protein 28 21.3 25 0.00086 19.2 0.5 12 107-118 9-20 (46)
105 2eoj_A Zinc finger protein 268 21.1 15 0.00052 19.8 -0.5 12 107-118 9-20 (44)
106 3irb_A Uncharacterized protein 21.1 33 0.0011 25.2 1.2 26 86-119 45-70 (145)
107 2kvg_A Zinc finger and BTB dom 21.1 29 0.00099 16.4 0.6 9 110-118 3-11 (27)
108 2ysp_A Zinc finger protein 224 21.0 25 0.00084 19.2 0.4 13 106-118 8-20 (46)
109 1x62_A C-terminal LIM domain p 20.9 47 0.0016 21.1 1.8 32 86-118 13-49 (79)
110 1tot_A CREB-binding protein; z 20.7 69 0.0024 19.3 2.4 22 88-118 6-27 (52)
111 2elm_A Zinc finger protein 406 20.6 39 0.0013 17.4 1.2 11 108-118 7-17 (37)
112 1qyp_A RNA polymerase II; tran 20.5 91 0.0031 18.8 3.0 31 88-118 15-51 (57)
113 3na7_A HP0958; flagellar bioge 20.3 41 0.0014 26.8 1.7 14 86-99 220-233 (256)
114 2xzm_5 Ribosomal protein S26E 20.3 48 0.0016 23.9 1.8 16 83-98 15-30 (119)
115 3u5c_b RP61, YS20, 40S ribosom 20.2 33 0.0011 23.1 0.9 28 88-118 34-61 (82)
116 1twf_J DNA-directed RNA polyme 20.2 29 0.00098 22.7 0.6 14 87-100 3-16 (70)
117 1jjd_A Metallothionein, SMTA; 20.2 40 0.0014 20.9 1.3 24 89-113 8-31 (55)
118 2ytp_A Zinc finger protein 484 20.1 23 0.0008 19.3 0.1 12 107-118 9-20 (46)
119 2em2_A Zinc finger protein 28 20.0 25 0.00087 19.2 0.3 12 107-118 9-20 (46)
No 1
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=6.2e-52 Score=391.17 Aligned_cols=179 Identities=35% Similarity=0.750 Sum_probs=166.4
Q ss_pred eEEeccCCCCcCCCCCCcceeEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCC
Q 029839 7 ILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES 86 (187)
Q Consensus 7 ~~~~t~~~~~~~~pp~~~~~~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~ 86 (187)
..|.|..++ +.||++++.|++.|+|||+|+|||+|||+||.+++++++++||||++||||++..+.|.++|+|++++.
T Consensus 19 ~~~~t~~~~--~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~ 96 (770)
T 3efo_B 19 QVYATNTRG--QIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGES 96 (770)
T ss_dssp SEEETTSSS--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTT
T ss_pred CCccCCCCC--CCCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCC
Confidence 478898655 459999999999999999999999999999999999999999999999999998877777999999889
Q ss_pred CceecCCCCeEEcCceEEEeCCceEEEecCCCC--------------CcccCCCCCCccCCccEEEEechhhh--ccCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD--------------GRCLDADERPELCRGTVEFAASREFM--MRNVM 150 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~--------------~~~~~~~~~pEL~~~tvE~~~p~~y~--~r~~~ 150 (187)
+|+||++|||||||||+|+++|++|+||||+.. |.|.|.++||||++|+|||++|.||+ .++++
T Consensus 97 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~~p~ 176 (770)
T 3efo_B 97 GPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPN 176 (770)
T ss_dssp CSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGSCCC
T ss_pred CCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccccCceeeecCHHHhccCCCCC
Confidence 999999999999999999999999999999982 34557789999999999999999998 47999
Q ss_pred CcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCC
Q 029839 151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF 187 (187)
Q Consensus 151 pp~~vFvID~s~~~~~~g~l~~~~~sL~~~L~~lP~~ 187 (187)
||+|+||||+|..++++|++++++++|+++|+.||++
T Consensus 177 pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~ 213 (770)
T 3efo_B 177 PPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKE 213 (770)
T ss_dssp CCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCC
T ss_pred CcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999963
No 2
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=8.5e-52 Score=390.06 Aligned_cols=179 Identities=40% Similarity=0.753 Sum_probs=167.2
Q ss_pred eEEeccCCCCcCCCCCCcceeEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCC
Q 029839 7 ILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES 86 (187)
Q Consensus 7 ~~~~t~~~~~~~~pp~~~~~~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~ 86 (187)
-.|.|+.++ +.||+++++|++.|+|||+|+|||+|||+||.+++++++++||||++||||++..+.|.++|+|++++.
T Consensus 15 ~~f~t~~~~--~~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~ 92 (766)
T 3eh2_A 15 EPFVTGVRG--QVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGES 92 (766)
T ss_dssp SEEETTSTT--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGG
T ss_pred CCcccCCCC--CCCCCCCCceEeeccCCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCC
Confidence 478899765 469999999999999999999999999999999999999999999999999998877778999998889
Q ss_pred CceecCCCCeEEcCceEEEeCCceEEEecCCCC--------------CcccCCCCCCccCCccEEEEechhhhc--cCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD--------------GRCLDADERPELCRGTVEFAASREFMM--RNVM 150 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~--------------~~~~~~~~~pEL~~~tvE~~~p~~y~~--r~~~ 150 (187)
+|+||++|||||||||+|+++|++|+||||+.. +.|.|.++||||+.|+|||++|.||+. ++++
T Consensus 93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~ 172 (766)
T 3eh2_A 93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPS 172 (766)
T ss_dssp CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCC
T ss_pred CCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHHHhccccccccccccccCcccccCceeeecCHhhccCCCCCC
Confidence 999999999999999999999999999999982 345678999999999999999999985 7899
Q ss_pred CcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCC
Q 029839 151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF 187 (187)
Q Consensus 151 pp~~vFvID~s~~~~~~g~l~~~~~sL~~~L~~lP~~ 187 (187)
||+|+||||+|..++++|++++++++|+++|+.||++
T Consensus 173 pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~ 209 (766)
T 3eh2_A 173 PPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPRE 209 (766)
T ss_dssp CCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCC
T ss_pred CCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999963
No 3
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=1.8e-46 Score=355.70 Aligned_cols=161 Identities=32% Similarity=0.626 Sum_probs=149.7
Q ss_pred cceeEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeEEcCceE
Q 029839 24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME 103 (187)
Q Consensus 24 ~~~~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~C~ayiNp~~~ 103 (187)
++.|+..|+|||+|+|||+|||+||.+++++++++||||++||||++..+.++++|+++. .+|+||++|+|||||||+
T Consensus 50 ~~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~--~~pvRC~~CrayiNPf~~ 127 (810)
T 1pcx_A 50 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVT 127 (810)
T ss_dssp GGSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCTTTCCBCCTTCE
T ss_pred CCccccccCCCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCC--CCCCccCCccCEecCceE
Confidence 488999999999999999999999999999999999999999999998766667999873 459999999999999999
Q ss_pred EEeCCceEEEecCCCC------------CcccCCCCCCccCCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHH
Q 029839 104 FVDNGKSFVCNFCGLD------------GRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATA 171 (187)
Q Consensus 104 ~~~~g~~w~C~~C~~~------------~~~~~~~~~pEL~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~ 171 (187)
|+.+|++|+||||+.. +.+.|..+||||+++||||++|++|+.|++.||+|+||||+|..++++|+++
T Consensus 128 ~~~~g~~W~C~~C~~~N~~P~~y~~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~ 207 (810)
T 1pcx_A 128 FIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLA 207 (810)
T ss_dssp EETTTTEEECTTTCCEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHH
T ss_pred EeCCCCEEEccCCCCcCCCchhhccccccCccccccCccccCceEEEEcCchhccCCCCCcEEEEEEECChHHHhhhHHH
Confidence 9999999999999983 3356788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 029839 172 AACSAIMQVISDLPV 186 (187)
Q Consensus 172 ~~~~sL~~~L~~lP~ 186 (187)
+++++|+++|+.||+
T Consensus 208 ~~~~si~~~L~~Lp~ 222 (810)
T 1pcx_A 208 TTINTLLQNLDSIPN 222 (810)
T ss_dssp HHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999999996
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=3e-46 Score=357.37 Aligned_cols=161 Identities=32% Similarity=0.626 Sum_probs=150.4
Q ss_pred cceeEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeEEcCceE
Q 029839 24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME 103 (187)
Q Consensus 24 ~~~~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~C~ayiNp~~~ 103 (187)
++.|+..|+|||+|+|||+|||+||.+++++++++||||++|+||++..+.++++|+++. .+|+||++|+|||||||+
T Consensus 166 ~~~~~~~d~gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~--~~pvRC~rCrAYiNPf~~ 243 (926)
T 1m2v_B 166 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVT 243 (926)
T ss_dssp GGSSSCSSSSSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCSSSCCBCCTTCE
T ss_pred CcccccccCCCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCC--CCCCccCCccCEecCceE
Confidence 488999999999999999999999999999999999999999999998766667999873 459999999999999999
Q ss_pred EEeCCceEEEecCCCC------------CcccCCCCCCccCCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHH
Q 029839 104 FVDNGKSFVCNFCGLD------------GRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATA 171 (187)
Q Consensus 104 ~~~~g~~w~C~~C~~~------------~~~~~~~~~pEL~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~ 171 (187)
|+.+|++|+||||+.. +.+.|..+||||+++||||++|++|+.|++.||+||||||+|..++++|+++
T Consensus 244 ~~~~g~~W~CnfC~~~N~~P~~Y~~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~ 323 (926)
T 1m2v_B 244 FIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLA 323 (926)
T ss_dssp EETTTTEEECTTTCCEEECCGGGTTTSTTCGGGGGGSHHHHCSEEEEECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHH
T ss_pred EeCCCCEEEccCCCCCCCCchhhccccccCccccccCccccCceEEEEcChhhccCCCCCcEEEEEEECCHHHHhhhHHH
Confidence 9999999999999983 3455788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 029839 172 AACSAIMQVISDLPV 186 (187)
Q Consensus 172 ~~~~sL~~~L~~lP~ 186 (187)
+++++|+++|+.||+
T Consensus 324 ~l~~sI~~~L~~LP~ 338 (926)
T 1m2v_B 324 TTINTLLQNLDSIPN 338 (926)
T ss_dssp HHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999999996
No 5
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=5.6e-45 Score=342.97 Aligned_cols=150 Identities=35% Similarity=0.698 Sum_probs=137.3
Q ss_pred CCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeEEcCceEEEeCCce
Q 029839 31 DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKS 110 (187)
Q Consensus 31 d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~C~ayiNp~~~~~~~g~~ 110 (187)
++|||+|+|||+|||+||.+++++++++||||++||||++.. ++|+++ ..+|+||++|||||||||+| .+|++
T Consensus 34 ~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~----~~P~v~--~~~p~RC~rCrayiNPf~~f-~~~~~ 106 (751)
T 3eh1_A 34 KKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLT----QLPVIT--SNTIVRCRSCRTYINPFVSF-IDQRR 106 (751)
T ss_dssp HHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCS----CCCEEC--CSCCCBCTTTCCBCCTTCEE-SSSSE
T ss_pred cccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCC----CCCccC--CCCCCcccCccCEeCCceEE-ecCCE
Confidence 489999999999999999999999999999999999999864 389887 35799999999999999999 45789
Q ss_pred EEEecCCCCC-------------cccCCCCCCccCCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHHHHHHHH
Q 029839 111 FVCNFCGLDG-------------RCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAI 177 (187)
Q Consensus 111 w~C~~C~~~~-------------~~~~~~~~pEL~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~~~~~sL 177 (187)
|+||||+..| .+.|.++||||++|||||++|++|+.|+++||+|+||||+|..++++|++++++++|
T Consensus 107 w~Cn~C~~~N~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl 186 (751)
T 3eh1_A 107 WKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQSL 186 (751)
T ss_dssp EECTTTCCEEECCGGGC---------CGGGSHHHHCSEEEEEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHHHHH
T ss_pred EEcccccCCCCCCHHHhcccccccccCcccCchhccceEEEEcChhhhcCCCCCcEEEEEEEccHhhhhhhHHHHHHHHH
Confidence 9999999832 124678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCC
Q 029839 178 MQVISDLPVF 187 (187)
Q Consensus 178 ~~~L~~lP~~ 187 (187)
+++|+.||++
T Consensus 187 ~~~L~~lp~~ 196 (751)
T 3eh1_A 187 LENLDKLPGD 196 (751)
T ss_dssp HHHTTTSSCC
T ss_pred HHHHHhcCCC
Confidence 9999999974
No 6
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=5e-39 Score=303.38 Aligned_cols=149 Identities=21% Similarity=0.328 Sum_probs=133.5
Q ss_pred ceeEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCC--CCeEEcCce
Q 029839 25 SKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFM 102 (187)
Q Consensus 25 ~~~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~--C~ayiNp~~ 102 (187)
++|...|++|++|+|||+|||+||.+++++++++||||++||||++.. ++|+++ .+|+||++ |+|||||||
T Consensus 6 ~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~---~~pvRC~~~~CrayiNPf~ 78 (769)
T 2nut_A 6 TTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQ---YEPVLCSRTTCRAVLNPLC 78 (769)
T ss_dssp -CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCS----CCCCBC---SCCCBCSSTTCCCBCCTTS
T ss_pred cchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCC----CCCcCC---CCCCcCCCCCCCeEECCce
Confidence 557777889999999999999999999999999999999999999753 388888 57999999 999999999
Q ss_pred EEEeCCceEEEecCCCCCc----c---cCCCCCCcc--CCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHHHH
Q 029839 103 EFVDNGKSFVCNFCGLDGR----C---LDADERPEL--CRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAA 173 (187)
Q Consensus 103 ~~~~~g~~w~C~~C~~~~~----~---~~~~~~pEL--~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~~~ 173 (187)
+|+.+|++|+||||+..|. + ...+.+||| +++||||++|++| +.||+|+||||+|..+++ ++++
T Consensus 79 ~~~~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~----p~pp~~vFvIDvS~~a~~---l~~l 151 (769)
T 2nut_A 79 QVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGP----QMPLIFLYVVDTCMEDED---LQAL 151 (769)
T ss_dssp EEETTTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSC----CCCCEEEEEEECCSCHHH---HHHH
T ss_pred EEeCCCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCC----CCCCEEEEEEECCccHHH---HHHH
Confidence 9999999999999999542 2 124678999 8999999999986 789999999999999887 8999
Q ss_pred HHHHHHHHhcCCCC
Q 029839 174 CSAIMQVISDLPVF 187 (187)
Q Consensus 174 ~~sL~~~L~~lP~~ 187 (187)
+++|+++|+.||++
T Consensus 152 ~~si~~~L~~Lp~~ 165 (769)
T 2nut_A 152 KESMQMSLSLLPPT 165 (769)
T ss_dssp HHHHHHHHTTSCTT
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999999974
No 7
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=2e-37 Score=292.48 Aligned_cols=140 Identities=21% Similarity=0.388 Sum_probs=126.6
Q ss_pred CCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCC--CCeEEcCceEEEeCCceE
Q 029839 34 NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFMEFVDNGKSF 111 (187)
Q Consensus 34 n~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~--C~ayiNp~~~~~~~g~~w 111 (187)
|++|+|||+|||+||.+++++++++||||++||||++.. ++|+++ .+|+||++ |+|||||||+|+.+|++|
T Consensus 6 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W 78 (768)
T 1m2o_A 6 NEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYD----ELNVAP---YNPVVCSGPHCKSILNPYCVIDPRNSSW 78 (768)
T ss_dssp HHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCT----TCCEEC---SCCCBCCSTTTCCBCCTTSCEETTTTEE
T ss_pred ccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCC----CCCcCC---CCCCccCCCCCCeEECCceEEeCCCCEE
Confidence 789999999999999999999999999999999999753 389987 57999999 999999999999999999
Q ss_pred EEecCCCCCc----cc---CCCCCCccCCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcC
Q 029839 112 VCNFCGLDGR----CL---DADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDL 184 (187)
Q Consensus 112 ~C~~C~~~~~----~~---~~~~~pEL~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~~~~~sL~~~L~~l 184 (187)
+||||+..|. +. ..+.+|||+++||||++|. +++.||+|+||||+|..+++ +++++++|+++|+.|
T Consensus 79 ~C~~C~~~N~~P~~y~~~~~~~~~pEL~~~tvEy~~p~----~~~~pp~~vFvIDvs~~~~~---l~~l~~sl~~~L~~L 151 (768)
T 1m2o_A 79 SCPICNSRNHLPPQYTNLSQENMPLELQSTTIEYITNK----PVTVPPIFFFVVDLTSETEN---LDSLKESIITSLSLL 151 (768)
T ss_dssp CCTTTCCCCBCCGGGCC---CCCCGGGTCSEEEEECSC----CCCSCCEEEEEEECCSCHHH---HHHHHHHHHHHHHTS
T ss_pred EcccCCCCCCCChHHccCCcccCChhhccCCEEEECCC----CCCCCCEEEEEEECCcCHHH---HHHHHHHHHHHHHhC
Confidence 9999999654 21 2467899999999999997 57899999999999999876 899999999999999
Q ss_pred CCC
Q 029839 185 PVF 187 (187)
Q Consensus 185 P~~ 187 (187)
|++
T Consensus 152 p~~ 154 (768)
T 1m2o_A 152 PPN 154 (768)
T ss_dssp CTT
T ss_pred CCC
Confidence 974
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.42 E-value=4.1e-14 Score=92.83 Aligned_cols=36 Identities=31% Similarity=0.593 Sum_probs=33.3
Q ss_pred CCCceecCC--CCeEEcCceEEEeCCceEEEecCCCCC
Q 029839 85 ESGLVRCCC--CRGYRNPFMEFVDNGKSFVCNFCGLDG 120 (187)
Q Consensus 85 ~~~~~RC~~--C~ayiNp~~~~~~~g~~w~C~~C~~~~ 120 (187)
+++|+||++ |+||||||++|+.+|++|+|+||+..+
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N 43 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRN 43 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEE
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcC
Confidence 478999999 999999999999999999999999844
No 9
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=86.52 E-value=0.15 Score=32.78 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=19.4
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
..-|.+|++++.- ..+.-+|+|++|..
T Consensus 33 ~r~CaRCGg~v~l----r~~k~~WvC~lC~k 59 (62)
T 2a20_A 33 TKFCARCGGRVSL----RSNKVMWVCNLCRK 59 (62)
T ss_dssp CEECTTSEEEEES----STTCEEEEEHHHHH
T ss_pred CeeecccCCEeee----cCCeEEEEehhhhh
Confidence 4567788887654 33567899999953
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=82.88 E-value=2.4 Score=25.52 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=22.7
Q ss_pred CceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
....|..|++- -..++.....++|..||.
T Consensus 4 ~~~~CP~C~~~---~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 4 KQKVCPACESA---ELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp SCCSCTTTSCC---CEEEETTTTEEEESSSCC
T ss_pred ccEeCcCCCCc---ceEEcCCCCeEECcccCC
Confidence 35689999982 245777777899999998
No 11
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=81.80 E-value=0.69 Score=30.68 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=19.5
Q ss_pred CceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
-++||. |+++ .-.+.+.+.-.|+ ||.
T Consensus 3 ~vv~C~-C~~~----~~~~~~~kT~~C~-CG~ 28 (71)
T 1gh9_A 3 IIFRCD-CGRA----LYSREGAKTRKCV-CGR 28 (71)
T ss_dssp EEEEET-TSCC----EEEETTCSEEEET-TTE
T ss_pred EEEECC-CCCE----EEEcCCCcEEECC-CCC
Confidence 478999 9998 2345566666898 998
No 12
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=80.30 E-value=0.46 Score=31.09 Aligned_cols=32 Identities=31% Similarity=0.677 Sum_probs=28.9
Q ss_pred CCceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
..+..|.+|++--.|..+-...|. ..||.|+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl 38 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 38 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHH
Confidence 457999999999999999888887 99999997
No 13
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=75.98 E-value=0.45 Score=28.47 Aligned_cols=30 Identities=30% Similarity=0.639 Sum_probs=25.0
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
|..|.+|++--.|..+-..+|. ..||.||.
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 30 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 30 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHH
Confidence 4579999999888888777787 89999987
No 14
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.73 E-value=1.9 Score=28.98 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=22.8
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
...|..|.--+.-.|.+...+..|+|.+|..
T Consensus 42 g~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k 72 (76)
T 2csz_A 42 TNTCRGCNHLVCRDCRIQESNGTWRCKVCSG 72 (76)
T ss_dssp TSEETTTTEECCTTSEEECSTTCEEEHHHHS
T ss_pred CCcCcccChhhcccccccCCCCCEEEeeCch
Confidence 4567777777777777766567899999965
No 15
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=69.54 E-value=3.2 Score=28.16 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=21.3
Q ss_pred CceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
.--.|..|++- . .+......|.|..|+.
T Consensus 26 ~~y~Cp~CG~~---~-v~r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 26 EDHACPNCGED---R-VDRQGTGIWQCSYCDY 53 (83)
T ss_dssp SCEECSSSCCE---E-EEEEETTEEEETTTCC
T ss_pred ccCcCCCCCCc---c-eeccCCCeEECCCCCC
Confidence 35689999984 2 3455566899999999
No 16
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=69.50 E-value=4 Score=33.19 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=27.5
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCC
Q 029839 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185 (187)
Q Consensus 150 ~pp~~vFvID~s~~~~~~g~l~~~~~sL~~~L~~lP 185 (187)
.+..++|+||+|.+ +. +-+++++++++..|..++
T Consensus 133 ~~~~vvfLVDtSgS-M~-~kl~~vk~al~~Ll~sl~ 166 (242)
T 3rag_A 133 VALHLVVCLDTSAS-MR-DKIPTVREAVRDLALSLK 166 (242)
T ss_dssp SCEEEEEEEECSGG-GT-TTHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECccc-HH-HHHHHHHHHHHHHHHHHh
Confidence 56789999999885 43 458999999999887654
No 17
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=66.78 E-value=2.3 Score=22.25 Aligned_cols=26 Identities=31% Similarity=0.800 Sum_probs=20.8
Q ss_pred ecCCCCeEEcCceEEEeCCceEEEecC
Q 029839 90 RCCCCRGYRNPFMEFVDNGKSFVCNFC 116 (187)
Q Consensus 90 RC~~C~ayiNp~~~~~~~g~~w~C~~C 116 (187)
.|-.|--|=|-||. +.-|+.|-|.-|
T Consensus 2 ~cvscv~fgngfcg-dncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCG-DNCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEE-CSSSCEEECSCC
T ss_pred cceEeEeecCcccc-CCcCCcccccCC
Confidence 37778888899994 566889999876
No 18
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=66.54 E-value=1.4 Score=34.75 Aligned_cols=31 Identities=29% Similarity=0.658 Sum_probs=20.5
Q ss_pred CCCceecCCCCe-EEcCceEEEeCCceEEEecCCC
Q 029839 85 ESGLVRCCCCRG-YRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 85 ~~~~~RC~~C~a-yiNp~~~~~~~g~~w~C~~C~~ 118 (187)
.-...+|++|++ |+...- +..+.++|++|+-
T Consensus 131 ~L~l~~C~~Cgg~fv~~~~---~~~~~f~Cp~C~~ 162 (192)
T 2avu_E 131 LLQLSSCNCCGGNFITHAH---QPVGSFACSLCQP 162 (192)
T ss_dssp SEEEEECTTTCCEEEEESS---CCSSCCCCTTC--
T ss_pred ceeeCcCCCCCCCeeCccC---CCCCCCcCCCCCC
Confidence 345789999998 443333 2456799999997
No 19
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=65.89 E-value=7.6 Score=34.10 Aligned_cols=36 Identities=25% Similarity=0.173 Sum_probs=28.4
Q ss_pred CCcEEEEEEEcchhhHh--hcHHHHHHHHHHHHHhcCCC
Q 029839 150 MPPVYFFLIDVSTDAVQ--TGATAAACSAIMQVISDLPV 186 (187)
Q Consensus 150 ~pp~~vFvID~s~~~~~--~g~l~~~~~sL~~~L~~lP~ 186 (187)
.+..++||||+|.. +. ..-++.++++++..|+.|++
T Consensus 76 ~~~dvv~VLD~SGS-M~~~~~rl~~ak~a~~~ll~~L~~ 113 (464)
T 4fx5_A 76 SENVEVIIIDCSGS-MDYPRTKMMAAKEATKVAIDTLTD 113 (464)
T ss_dssp CCEEEEEEEECCGG-GGTTTHHHHHHHHHHHHHHHHSCT
T ss_pred CCceEEEEEEcCcc-cCCCCchHHHHHHHHHHHHHhCCC
Confidence 34679999999874 43 34489999999999998864
No 20
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.63 E-value=3.2 Score=25.37 Aligned_cols=25 Identities=24% Similarity=0.642 Sum_probs=18.4
Q ss_pred ceecCCCCe--EEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRG--YRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~a--yiNp~~~~~~~g~~w~C~~C~~ 118 (187)
-.-|.+|++ ++-+ ...+|.|.-|+.
T Consensus 19 ~k~CP~CG~~~fm~~------~~~R~~C~kCG~ 45 (50)
T 3j20_Y 19 NKFCPRCGPGVFMAD------HGDRWACGKCGY 45 (50)
T ss_dssp SEECSSSCSSCEEEE------CSSEEECSSSCC
T ss_pred cccCCCCCCceEEec------CCCeEECCCCCC
Confidence 567999998 5332 346799999986
No 21
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=63.74 E-value=0.65 Score=28.18 Aligned_cols=31 Identities=29% Similarity=0.725 Sum_probs=26.2
Q ss_pred CceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
....|.+|++--.|..+-...|. ..||.||.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 33 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGL 33 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHH
Confidence 35679999999989888777786 89999987
No 22
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=63.33 E-value=1.2 Score=32.23 Aligned_cols=32 Identities=28% Similarity=0.639 Sum_probs=25.9
Q ss_pred CCceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
..+..|.+|++---|..+-+..| .+.||.|+.
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl 34 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGL 34 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTS-CEECHHHHH
T ss_pred CCCCCCCCCCCccCCcceECCCC-CCcCcchhh
Confidence 34678999999999999887777 499999996
No 23
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=61.39 E-value=2 Score=32.55 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=24.1
Q ss_pred CCceecCCCCeEEcCceEE-EeCCceEEEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEF-VDNGKSFVCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~-~~~g~~w~C~~C~~ 118 (187)
..-..|..|+..+.--|.. ......|+|.+|..
T Consensus 83 ~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 83 NSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp SCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 3457777787777777763 33457899999987
No 24
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=60.48 E-value=1.3 Score=26.82 Aligned_cols=30 Identities=23% Similarity=0.587 Sum_probs=15.8
Q ss_pred eecCCCCeEEcCc----eEEEeCCceEEEecCCC
Q 029839 89 VRCCCCRGYRNPF----MEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 89 ~RC~~C~ayiNp~----~~~~~~g~~w~C~~C~~ 118 (187)
-+|..|+-.-.|- ..|...-..|+|+.|+.
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 4677777443321 11222223488888886
No 25
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=59.02 E-value=4.7 Score=29.74 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=23.8
Q ss_pred CceecCCCCeEEcCceEEEeC----CceEEEecCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDN----GKSFVCNFCGL 118 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~----g~~w~C~~C~~ 118 (187)
.-..|..|+-.+..-|..... ...|+|.+|..
T Consensus 71 ~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 71 ASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 347788888887777776542 35899999987
No 26
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=57.77 E-value=1.7 Score=29.95 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=20.6
Q ss_pred CCceecCCCCeEEcCc-----------eEEEeCCceEEEecCCCC
Q 029839 86 SGLVRCCCCRGYRNPF-----------MEFVDNGKSFVCNFCGLD 119 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~-----------~~~~~~g~~w~C~~C~~~ 119 (187)
...-+|..|+=.-.+- ..|..--..|+|++|+..
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 3467888888554432 222233345899999874
No 27
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=55.04 E-value=3.6 Score=32.33 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=18.7
Q ss_pred CceecCCCCeEEcCceEEEeCCceEEEecCCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~ 119 (187)
..-+|..||-.... ..-|+|++|+..
T Consensus 170 ~~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred cEEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 46799999955332 334999999984
No 28
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=51.27 E-value=2.1 Score=26.44 Aligned_cols=9 Identities=44% Similarity=1.368 Sum_probs=5.6
Q ss_pred eEEEecCCC
Q 029839 110 SFVCNFCGL 118 (187)
Q Consensus 110 ~w~C~~C~~ 118 (187)
.|+|+.|+.
T Consensus 35 dw~CP~Cg~ 43 (52)
T 1yk4_A 35 DWVCPLCGA 43 (52)
T ss_dssp TCBCTTTCC
T ss_pred CCcCCCCCC
Confidence 466666665
No 29
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=49.74 E-value=1.4 Score=28.54 Aligned_cols=32 Identities=31% Similarity=0.600 Sum_probs=27.2
Q ss_pred CCceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
.....|.+|++--.|..+-..+|. ..||.||.
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl 36 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGD-PVCNACGL 36 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHH
T ss_pred CCCCcCCCcCCCCCCccCCCCCCC-chhhHHHH
Confidence 446789999999888888777787 89999997
No 30
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=48.75 E-value=2.8 Score=27.55 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=17.4
Q ss_pred ceecCCCCeEEcCc-----------eEEEeCCceEEEecCCCC
Q 029839 88 LVRCCCCRGYRNPF-----------MEFVDNGKSFVCNFCGLD 119 (187)
Q Consensus 88 ~~RC~~C~ayiNp~-----------~~~~~~g~~w~C~~C~~~ 119 (187)
.-+|..|+=.-.|- ..|..--..|+|++|+..
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 46777777443321 112222334888888873
No 31
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=48.17 E-value=2.2 Score=26.41 Aligned_cols=9 Identities=33% Similarity=1.176 Sum_probs=5.2
Q ss_pred eEEEecCCC
Q 029839 110 SFVCNFCGL 118 (187)
Q Consensus 110 ~w~C~~C~~ 118 (187)
.|+|+.|+.
T Consensus 36 dw~CP~Cg~ 44 (52)
T 1e8j_A 36 DWACPVCGA 44 (52)
T ss_dssp TCCCSSSCC
T ss_pred CCcCCCCCC
Confidence 366666655
No 32
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=46.77 E-value=11 Score=27.16 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=21.7
Q ss_pred eecCCCCeEEcCceE----EEeCC---ceEEEecCCC
Q 029839 89 VRCCCCRGYRNPFME----FVDNG---KSFVCNFCGL 118 (187)
Q Consensus 89 ~RC~~C~ayiNp~~~----~~~~g---~~w~C~~C~~ 118 (187)
.-|++|++++=|-.+ +..++ -.+.|..||+
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~ 102 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGY 102 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCC
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCC
Confidence 479999999987633 33332 3578999998
No 33
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=45.45 E-value=3.3 Score=25.86 Aligned_cols=9 Identities=44% Similarity=1.479 Sum_probs=5.8
Q ss_pred eEEEecCCC
Q 029839 110 SFVCNFCGL 118 (187)
Q Consensus 110 ~w~C~~C~~ 118 (187)
.|+|+.|+.
T Consensus 36 dw~CP~Cg~ 44 (54)
T 4rxn_A 36 DWVCPLCGV 44 (54)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 466666665
No 34
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=43.93 E-value=11 Score=27.16 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=21.6
Q ss_pred eecCCCCeEEcCceE----EEeCC---ceEEEecCCC
Q 029839 89 VRCCCCRGYRNPFME----FVDNG---KSFVCNFCGL 118 (187)
Q Consensus 89 ~RC~~C~ayiNp~~~----~~~~g---~~w~C~~C~~ 118 (187)
.-|++|++++=|-.+ +..++ -.+.|..||+
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~ 97 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGH 97 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCC
Confidence 479999999987633 33332 3568999998
No 35
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=43.29 E-value=17 Score=23.45 Aligned_cols=29 Identities=17% Similarity=0.380 Sum_probs=22.3
Q ss_pred CCceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
-++.+|..|++ |.. ++......+|..|+.
T Consensus 8 LeiL~CP~ck~---~L~-~~~~~g~LvC~~c~~ 36 (67)
T 2jny_A 8 LEVLACPKDKG---PLR-YLESEQLLVNERLNL 36 (67)
T ss_dssp TCCCBCTTTCC---BCE-EETTTTEEEETTTTE
T ss_pred HHHhCCCCCCC---cCe-EeCCCCEEEcCCCCc
Confidence 35899999999 443 555566799999998
No 36
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=43.22 E-value=17 Score=23.66 Aligned_cols=28 Identities=29% Similarity=0.619 Sum_probs=21.7
Q ss_pred CceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
.+.+|..|++= .. ++......+|..|+.
T Consensus 7 ~iL~CP~ck~~---L~-~~~~~~~LiC~~cg~ 34 (70)
T 2js4_A 7 DILVCPVCKGR---LE-FQRAQAELVCNADRL 34 (70)
T ss_dssp CCCBCTTTCCB---EE-EETTTTEEEETTTTE
T ss_pred hheECCCCCCc---CE-EeCCCCEEEcCCCCc
Confidence 58999999993 33 455566799999998
No 37
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=43.07 E-value=3.2 Score=25.91 Aligned_cols=9 Identities=44% Similarity=1.239 Sum_probs=5.7
Q ss_pred eEEEecCCC
Q 029839 110 SFVCNFCGL 118 (187)
Q Consensus 110 ~w~C~~C~~ 118 (187)
.|+|+.|+.
T Consensus 36 dw~CP~Cga 44 (55)
T 2v3b_B 36 DWVCPDCGV 44 (55)
T ss_dssp TCCCTTTCC
T ss_pred CCcCCCCCC
Confidence 466666665
No 38
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=42.63 E-value=7.8 Score=27.52 Aligned_cols=30 Identities=23% Similarity=0.477 Sum_probs=21.7
Q ss_pred CCceecCCCCeEEcCceEEEeCCceE-EEecCCCCCc
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-VCNFCGLDGR 121 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w-~C~~C~~~~~ 121 (187)
..-.||.+|+..... ..... .|+-|++...
T Consensus 71 p~~~~C~~CG~~~e~------~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 71 KVELECKDCSHVFKP------NALDYGVCEKCHSKNV 101 (119)
T ss_dssp CCEEECSSSSCEECS------CCSTTCCCSSSSSCCC
T ss_pred cceEEcCCCCCEEeC------CCCCCCcCccccCCCc
Confidence 346899999987544 34457 8999999644
No 39
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=41.17 E-value=3.4 Score=27.99 Aligned_cols=10 Identities=30% Similarity=0.860 Sum_probs=7.1
Q ss_pred eEEEecCCCC
Q 029839 110 SFVCNFCGLD 119 (187)
Q Consensus 110 ~w~C~~C~~~ 119 (187)
.|+|++|+..
T Consensus 60 dW~CPvCga~ 69 (81)
T 2kn9_A 60 DWSCPDCGAA 69 (81)
T ss_dssp TCCCTTTCCC
T ss_pred CCcCCCCCCC
Confidence 4777777773
No 40
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=40.22 E-value=5.8 Score=28.48 Aligned_cols=32 Identities=31% Similarity=0.600 Sum_probs=28.1
Q ss_pred CCceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
.....|.+|++-..|..+-..+| .-.||.||.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl 88 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANG-DPVCNACGL 88 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTS-CEECHHHHH
T ss_pred cccccCCCcCCCCcceeEECCCC-CCcchHHHH
Confidence 45789999999999998888888 589999997
No 41
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=39.50 E-value=18 Score=32.83 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=26.1
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCC
Q 029839 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185 (187)
Q Consensus 150 ~pp~~vFvID~s~~~~~~g~l~~~~~sL~~~L~~lP 185 (187)
.+.-++||||.|.. +...-++.+++.++..|+.|.
T Consensus 242 ~~~div~vlD~SgS-M~~~~~~~~k~~~~~~i~~l~ 276 (741)
T 3hrz_D 242 GSMNIYLVLDGSGS-IGASDFTGAKKCLVNLIEKVA 276 (741)
T ss_dssp CEEEEEEEEECSTT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEeccCCc-ccccchHHHHHHHHHHHHhhh
Confidence 45679999999874 433347888888888887654
No 42
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=39.34 E-value=22 Score=22.99 Aligned_cols=28 Identities=11% Similarity=0.316 Sum_probs=21.5
Q ss_pred CceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
.+.+|..|++ +.. ++......+|..|+.
T Consensus 7 ~iL~CP~ck~---~L~-~~~~~~~LiC~~cg~ 34 (68)
T 2jr6_A 7 DILVCPVTKG---RLE-YHQDKQELWSRQAKL 34 (68)
T ss_dssp CCCBCSSSCC---BCE-EETTTTEEEETTTTE
T ss_pred hheECCCCCC---cCe-EeCCCCEEEcCCCCc
Confidence 5889999997 333 455566799999998
No 43
>2x5r_A Hypothetical protein ORF126; unknown function, viral protein; 2.00A {Pyrobaculum spherical virus}
Probab=38.83 E-value=17 Score=25.24 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=24.3
Q ss_pred CCceecCCCCeEEcCceEE----EeCCceEEEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEF----VDNGKSFVCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~----~~~g~~w~C~~C~~ 118 (187)
+.-+||-+|+|-.|-...| +++|..|.=..|..
T Consensus 75 dtkprcvkcgaayngknhfrvvairngtyyldavcdk 111 (127)
T 2x5r_A 75 DTKPRCVKCGAAYNGKNHFRVVAIRNGTYYLDAVCDK 111 (127)
T ss_dssp HHCCBCTTTCCBCCSSSCEEEEEETTTTEEEEEEETT
T ss_pred CCCcceeeecccccCCCcEEEEEEecCcEEeeeeccc
Confidence 4579999999998876655 56777776666654
No 44
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.68 E-value=11 Score=23.24 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=21.6
Q ss_pred CCceecCCCCeEEcCceEEEeCCceEEEecCCCCCcc
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRC 122 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~~~~ 122 (187)
...-.|.+|+|- ..-..|.|-=||+.+.|
T Consensus 12 ~~k~iCpkC~a~--------~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 12 FKKYVCLRCGAT--------NPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSEEECTTTCCE--------ECTTCSSCSSSSSCCCE
T ss_pred hCCccCCCCCCc--------CCCCceecCCCCCcccc
Confidence 456789999997 23446999999997554
No 45
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=38.18 E-value=21 Score=25.36 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=24.6
Q ss_pred CCceecCCCCeEEcCceEEEeCCceE-----EEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w-----~C~~C~~ 118 (187)
....+|..|+-.|-.-..+...++.| +|..|+.
T Consensus 59 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~ 96 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQA 96 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCC
T ss_pred ccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCC
Confidence 44689999999887654456677777 7888876
No 46
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=37.90 E-value=5.5 Score=28.29 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=20.0
Q ss_pred CceecCCCCeEEcCceEEEeCCceEEEecCCCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDG 120 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~~ 120 (187)
.+.+|++||-- | ....++.-+|+.|++.+
T Consensus 66 ~p~~C~~CG~~---F--~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 66 KPAQCRKCGFV---F--KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp CCCBBTTTCCB---C--CCCSSCCSSCSSSCCCC
T ss_pred ECcChhhCcCe---e--cccCCCCCCCcCCCCCc
Confidence 47899999865 3 12334557899998854
No 47
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.86 E-value=19 Score=23.11 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=22.0
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
-++|..|+.. -.-|........|..|++
T Consensus 15 ~VkCp~C~~~---q~VFSha~t~V~C~~Cgt 42 (63)
T 3j20_W 15 RVKCIDCGNE---QIVFSHPATKVRCLICGA 42 (63)
T ss_dssp EEECSSSCCE---EEEESSCSSCEECSSSCC
T ss_pred EEECCCCCCe---eEEEecCCeEEEccCcCC
Confidence 4899999987 333556677799999998
No 48
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=37.66 E-value=21 Score=23.12 Aligned_cols=28 Identities=25% Similarity=0.688 Sum_probs=21.3
Q ss_pred CceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
.+.+|..|++ +.. ++......+|..|+.
T Consensus 7 ~iL~CP~ck~---~L~-~~~~~~~LiC~~cg~ 34 (68)
T 2hf1_A 7 EILVCPLCKG---PLV-FDKSKDELICKGDRL 34 (68)
T ss_dssp EECBCTTTCC---BCE-EETTTTEEEETTTTE
T ss_pred hheECCCCCC---cCe-EeCCCCEEEcCCCCc
Confidence 4789999997 333 455566799999987
No 49
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=37.44 E-value=19 Score=23.30 Aligned_cols=27 Identities=26% Similarity=0.515 Sum_probs=21.1
Q ss_pred eecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 89 VRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 89 ~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
++|..|+.. -.-|........|..|++
T Consensus 8 VKCp~C~ni---q~VFShA~tvV~C~~Cg~ 34 (66)
T 1qxf_A 8 VKCPDCEHE---QVIFDHPSTIVKCIICGR 34 (66)
T ss_dssp EECTTTCCE---EEEESSCSSCEECSSSCC
T ss_pred EECCCCCCc---eEEEecCceEEEcccCCC
Confidence 789999877 334555677799999998
No 50
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.11 E-value=19 Score=25.28 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=5.5
Q ss_pred ceecCCCCeEEc
Q 029839 88 LVRCCCCRGYRN 99 (187)
Q Consensus 88 ~~RC~~C~ayiN 99 (187)
..+|..|+-.|.
T Consensus 5 ~~~C~~C~~~I~ 16 (122)
T 1m3v_A 5 WKRCAGCGGKIA 16 (122)
T ss_dssp CCCBSSSSSCCC
T ss_pred CCCCcccCCEeC
Confidence 344444444443
No 51
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=36.35 E-value=8.6 Score=28.32 Aligned_cols=14 Identities=14% Similarity=0.408 Sum_probs=10.1
Q ss_pred CCceecCCCCeEEc
Q 029839 86 SGLVRCCCCRGYRN 99 (187)
Q Consensus 86 ~~~~RC~~C~ayiN 99 (187)
....||.+|+....
T Consensus 68 p~~~~C~~CG~~~~ 81 (139)
T 3a43_A 68 EAVFKCRNCNYEWK 81 (139)
T ss_dssp CCEEEETTTCCEEE
T ss_pred CCcEECCCCCCEEe
Confidence 34689999986643
No 52
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=35.34 E-value=39 Score=20.62 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=20.8
Q ss_pred eecCCCCeEEcCc-eEEEeCCceEE-------EecCCC
Q 029839 89 VRCCCCRGYRNPF-MEFVDNGKSFV-------CNFCGL 118 (187)
Q Consensus 89 ~RC~~C~ayiNp~-~~~~~~g~~w~-------C~~C~~ 118 (187)
.+|..|+-.|-+- ..+...|+.|- |..|+.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~ 40 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSK 40 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCC
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCC
Confidence 5788999888863 34555676775 777765
No 53
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=33.35 E-value=30 Score=22.06 Aligned_cols=32 Identities=28% Similarity=0.530 Sum_probs=20.2
Q ss_pred CceecCCCCeEEcCceEEEeCCceE-----EEecCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w-----~C~~C~~ 118 (187)
...+|..|+-.|-+--.+...++.| +|..|+.
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~ 42 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRK 42 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCC
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCC
Confidence 3578888888775333355566565 6777776
No 54
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=33.31 E-value=13 Score=22.36 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=23.2
Q ss_pred CCceecCCCCeEEcC---ceEEEeCCceEEEecCCCC
Q 029839 86 SGLVRCCCCRGYRNP---FMEFVDNGKSFVCNFCGLD 119 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp---~~~~~~~g~~w~C~~C~~~ 119 (187)
..+-.|..|+.-..- +..+..+.+.|.|..|+..
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~ 48 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTE 48 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCB
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCc
Confidence 457899999864221 1134556678999999983
No 55
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=32.43 E-value=7.4 Score=27.99 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=22.2
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
+.-|..|+..|-|--.-...+..|.|.-|+.
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y 34 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSY 34 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSC
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCC
Confidence 5679999998876542113346799999998
No 56
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=32.17 E-value=3.4 Score=27.28 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
.....|.+|++--.|..+-..+.....||.||.
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl 38 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFI 38 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCCccchHHHH
Confidence 457899999999888776521333378999987
No 57
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=31.69 E-value=29 Score=21.38 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=20.8
Q ss_pred CCCceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 85 ESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 85 ~~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
-..+..|..|+.+| ..+.++|..|+.
T Consensus 19 ~~~pt~C~~C~~~i--------~kqg~kC~~C~~ 44 (59)
T 1rfh_A 19 RGGPGWCDLCGREV--------LRQALRCANCKF 44 (59)
T ss_dssp SSCCEECTTTCSEE--------CSCCEECTTTSC
T ss_pred cCCCeEchhcchhh--------hhCccEeCCCCC
Confidence 36689999999999 133489999987
No 58
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=31.62 E-value=22 Score=26.21 Aligned_cols=28 Identities=29% Similarity=0.644 Sum_probs=21.6
Q ss_pred CCceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
...+.|.+|..- |. +. +|..|+|+-|++
T Consensus 25 ~~lP~CP~C~se---yt-Ye-Dg~l~vCPeC~h 52 (138)
T 2akl_A 25 STLPPCPQCNSE---YT-YE-DGALLVCPECAH 52 (138)
T ss_dssp CCSCCCTTTCCC---CC-EE-CSSSEEETTTTE
T ss_pred ccCCCCCCCCCc---ce-Ee-cCCeEECCcccc
Confidence 357999999874 55 33 566799999998
No 59
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=31.13 E-value=3 Score=23.76 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=18.5
Q ss_pred CCceecCCCCeEEc------CceEEEeCCceEEEecCCC
Q 029839 86 SGLVRCCCCRGYRN------PFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiN------p~~~~~~~g~~w~C~~C~~ 118 (187)
..+..|..|+--.. -+.....+.+.|.|.+|+.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred CcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence 34677777775433 2222233445678888863
No 60
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=30.00 E-value=19 Score=22.40 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=20.9
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
..+|..|+.- + ..++.....++|.-||.
T Consensus 11 ~~~Cp~C~~~--~-lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 11 RVTCPNHPDA--I-LVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSBTTBSSS--C-CEECSSSCCEECTTTCC
T ss_pred cccCcCCCCC--c-eeEeCCCCeEEeCCCCC
Confidence 5689999873 2 34565666799999998
No 61
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.84 E-value=29 Score=22.43 Aligned_cols=33 Identities=18% Similarity=0.459 Sum_probs=22.9
Q ss_pred CCceecCCCCeEEcCceEEEeCCceE-----EEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w-----~C~~C~~ 118 (187)
....+|..|+-.|-.--.+...++.| +|..|+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~ 50 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSV 50 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCC
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCC
Confidence 45789999998876433344566666 7888876
No 62
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.62 E-value=37 Score=20.83 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=21.5
Q ss_pred CCceecCCCCeEEcCceEEEeCCceE-----EEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w-----~C~~C~~ 118 (187)
....+|..|+..|-.-. +...++.| +|..|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~ 39 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTGG-VTYREQPWHKECFVCTACRK 39 (70)
T ss_dssp CCCCBCSSSCCBCCSSE-EESSSSEEETTTSBCSSSCC
T ss_pred CCCCCCcccCCeeccce-EEECccccCCCCCccCCCCC
Confidence 34578999988776543 45556666 5777776
No 63
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=29.57 E-value=28 Score=21.94 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=4.8
Q ss_pred ecCCCCeEEc
Q 029839 90 RCCCCRGYRN 99 (187)
Q Consensus 90 RC~~C~ayiN 99 (187)
+|..|+--|-
T Consensus 2 ~C~~C~~~I~ 11 (76)
T 1iml_A 2 KCPKCDKEVY 11 (76)
T ss_dssp BCTTTSSBCC
T ss_pred cCCCCCCEEE
Confidence 4555555443
No 64
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.43 E-value=20 Score=17.96 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=9.0
Q ss_pred CceEEEecCCC
Q 029839 108 GKSFVCNFCGL 118 (187)
Q Consensus 108 g~~w~C~~C~~ 118 (187)
.+.|.|..|+.
T Consensus 5 ~k~~~C~~C~k 15 (35)
T 2elx_A 5 SSGYVCALCLK 15 (35)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECCCCcc
Confidence 45689999997
No 65
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.19 E-value=18 Score=17.03 Aligned_cols=9 Identities=33% Similarity=1.076 Sum_probs=7.4
Q ss_pred eEEEecCCC
Q 029839 110 SFVCNFCGL 118 (187)
Q Consensus 110 ~w~C~~C~~ 118 (187)
.|.|..|+.
T Consensus 3 ~~~C~~C~k 11 (27)
T 2kvh_A 3 PFSCSLCPQ 11 (27)
T ss_dssp CEECSSSSC
T ss_pred CccCCCcCh
Confidence 588999987
No 66
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=29.06 E-value=33 Score=27.11 Aligned_cols=28 Identities=18% Similarity=0.475 Sum_probs=19.0
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
-.+|..|++= .-|. +..+| .|.|+-||.
T Consensus 14 ~~~CP~Cg~~-d~~~-~~~dg-~~~C~~Cg~ 41 (255)
T 1nui_A 14 HIPCDNCGSS-DGNS-LFSDG-HTFCYVCEK 41 (255)
T ss_dssp EECCSSSCCS-SCEE-EETTS-CEEETTTCC
T ss_pred CCcCCCCCCC-CCce-EeCCC-CeecccCCC
Confidence 4789999882 1222 22455 499999997
No 67
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=28.32 E-value=22 Score=21.95 Aligned_cols=28 Identities=21% Similarity=0.565 Sum_probs=19.2
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~ 119 (187)
-..|.+|++-+ |+. .....|.|.-|+.+
T Consensus 18 ~~fCPkCG~~~--~ma--~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGV--FLA--EHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTC--CCE--ECSSEEECTTTCCC
T ss_pred cccCcCCCCce--eEe--ccCCEEECCCCCCE
Confidence 45699999843 332 22347999999984
No 68
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.29 E-value=30 Score=22.39 Aligned_cols=28 Identities=18% Similarity=0.521 Sum_probs=20.8
Q ss_pred CceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
.+..|..|++= .. ++......+|..|+.
T Consensus 7 eiL~CP~ck~~---L~-~~~~~~~LiC~~cg~ 34 (69)
T 2pk7_A 7 DILACPICKGP---LK-LSADKTELISKGAGL 34 (69)
T ss_dssp GTCCCTTTCCC---CE-ECTTSSEEEETTTTE
T ss_pred hheeCCCCCCc---Ce-EeCCCCEEEcCCCCc
Confidence 47899999973 32 444556799999988
No 69
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.16 E-value=35 Score=23.51 Aligned_cols=31 Identities=19% Similarity=0.490 Sum_probs=16.8
Q ss_pred ceecCCCCeEEcCceEEEeCCceE-----EEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w-----~C~~C~~ 118 (187)
..+|..|+--|-.--.+...++.| +|..|+.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~ 38 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 38 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCS
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCC
Confidence 456667766555432234445555 5666655
No 70
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.90 E-value=21 Score=22.89 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=19.6
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~ 119 (187)
.-+|.+|++-+..- .+..-+|..||.+
T Consensus 21 ~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~R 47 (63)
T 3h0g_L 21 IYLCADCGARNTIQ-----AKEVIRCRECGHR 47 (63)
T ss_dssp CCBCSSSCCBCCCC-----SSSCCCCSSSCCC
T ss_pred EEECCCCCCeeecC-----CCCceECCCCCcE
Confidence 46888888887743 2455888888884
No 71
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=27.50 E-value=24 Score=17.76 Aligned_cols=11 Identities=36% Similarity=0.914 Sum_probs=9.0
Q ss_pred CceEEEecCCC
Q 029839 108 GKSFVCNFCGL 118 (187)
Q Consensus 108 g~~w~C~~C~~ 118 (187)
.+.|.|..|+.
T Consensus 5 ~k~~~C~~C~k 15 (35)
T 1srk_A 5 KRPFVCRICLS 15 (35)
T ss_dssp CSCEECSSSCC
T ss_pred CcCeeCCCCCc
Confidence 45689999988
No 72
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=27.16 E-value=26 Score=22.63 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=20.4
Q ss_pred CCceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
..+..|..|+.+| ..+.++|..|+.
T Consensus 33 ~~pt~C~~C~~~l--------~~qG~kC~~C~~ 57 (72)
T 2fnf_X 33 GGPGWCDLCGREV--------LRQALRCANCKF 57 (72)
T ss_dssp SSCCBCTTTSSBC--------SSCCEECTTSSC
T ss_pred CCCcchhhhhHHH--------HhCcCccCCCCC
Confidence 5689999999998 234489999987
No 73
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.77 E-value=41 Score=20.83 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=20.2
Q ss_pred CceecCCCCeEEcCc---eEEEeCCceE-----EEecCCC
Q 029839 87 GLVRCCCCRGYRNPF---MEFVDNGKSF-----VCNFCGL 118 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~---~~~~~~g~~w-----~C~~C~~ 118 (187)
...+|..|+-.|-++ ..+...++.| +|..|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~ 43 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSL 43 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCC
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCC
Confidence 467888998888751 1133345555 6777776
No 74
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.70 E-value=19 Score=26.72 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=18.1
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~ 119 (187)
.-||..|+....-. ...-.|+.||+.
T Consensus 132 ~y~C~~Cg~~~~~~------~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL------PPGGVCPDCGSK 157 (165)
T ss_dssp CEEESSSCCEESSC------CGGGBCTTTCCB
T ss_pred EEECCCCCCcccCC------CCCCcCCCCCCc
Confidence 57899999874432 223489999984
No 75
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=25.60 E-value=34 Score=22.98 Aligned_cols=28 Identities=25% Similarity=0.665 Sum_probs=21.6
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
-++|..|+.. -.-|........|..|++
T Consensus 32 ~VkCp~C~n~---q~VFShA~t~V~C~~Cg~ 59 (81)
T 2xzm_6 32 DVKCAQCQNI---QMIFSNAQSTIICEKCSA 59 (81)
T ss_dssp EEECSSSCCE---EEEETTCSSCEECSSSCC
T ss_pred EeECCCCCCe---eEEEecCccEEEccCCCC
Confidence 4899999987 333446677789999998
No 76
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.37 E-value=41 Score=20.74 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=19.2
Q ss_pred CCceecCCCCeEEcCc-eEEEeCCceE-----EEecCCC
Q 029839 86 SGLVRCCCCRGYRNPF-MEFVDNGKSF-----VCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~-~~~~~~g~~w-----~C~~C~~ 118 (187)
....+|..|+--|-+- ..+...++.| +|..|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~ 41 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRA 41 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCC
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCC
Confidence 3457888888766541 1233344444 6777766
No 77
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=25.32 E-value=35 Score=22.73 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=17.6
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
-+.|..|+.. |.. |.+|+|..|..
T Consensus 21 ~~~Cd~C~~~--pI~-----G~RykC~~C~d 44 (82)
T 2fc7_A 21 GFKCDNCGIE--PIQ-----GVRWHCQDCPP 44 (82)
T ss_dssp SCCCSSSCCS--SEE-----SCEEEESSSCS
T ss_pred cCCCCCCCCC--cce-----eceEECCcCCC
Confidence 4689999853 322 66799999975
No 78
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=25.04 E-value=70 Score=31.16 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=28.0
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCC
Q 029839 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPV 186 (187)
Q Consensus 150 ~pp~~vFvID~s~~~~~~g~l~~~~~sL~~~L~~lP~ 186 (187)
.+.-.+||||.|.. +...-++.+++.++..++.+..
T Consensus 129 ~~~DIvfvlD~SgS-m~~~~f~~~k~fv~~lv~~~~~ 164 (1095)
T 3k6s_A 129 QEQDIVFLIDGSGS-ISSRNFATMMNFVRAVISQFQR 164 (1095)
T ss_dssp CCEEEEEEEECCTT-SCSHHHHHHHHHHHHHHHSSCS
T ss_pred CCccEEEEEcCCCC-CChhHHHHHHHHHHHHHHhccc
Confidence 35679999999874 5444578899999999988753
No 79
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.89 E-value=17 Score=19.86 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=9.7
Q ss_pred CCceEEEecCCC
Q 029839 107 NGKSFVCNFCGL 118 (187)
Q Consensus 107 ~g~~w~C~~C~~ 118 (187)
+.+.|.|..|+.
T Consensus 9 ~~~~~~C~~C~k 20 (46)
T 2emi_A 9 GERHYECSECGK 20 (46)
T ss_dssp SCCCEECSSSCC
T ss_pred CCCCCCCCCCCc
Confidence 456699999998
No 80
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=24.50 E-value=14 Score=23.64 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=24.3
Q ss_pred CCceecCCCCeEEcCceEE----EeCCceEEEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEF----VDNGKSFVCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~----~~~g~~w~C~~C~~ 118 (187)
..++.|..|....+.+|-- ......|.|..|..
T Consensus 22 ~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 22 TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 5689999999998877741 11233599999976
No 81
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.18 E-value=21 Score=19.36 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=9.5
Q ss_pred CCceEEEecCCC
Q 029839 107 NGKSFVCNFCGL 118 (187)
Q Consensus 107 ~g~~w~C~~C~~ 118 (187)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (44)
T 2epv_A 9 GEKPYECNECGK 20 (44)
T ss_dssp CCCSEECSSSCC
T ss_pred CCcCeECCCCCc
Confidence 455689999998
No 82
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=23.94 E-value=34 Score=25.89 Aligned_cols=23 Identities=26% Similarity=0.684 Sum_probs=16.4
Q ss_pred CCceecCCCCeEEcCceEEEeCCceEEEe
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCN 114 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w~C~ 114 (187)
..+.+|..|++. +..++..|+|.
T Consensus 76 Gal~~CP~C~G~------l~y~~~~Y~C~ 98 (160)
T 2riq_A 76 GALLPCEECSGQ------LVFKSDAYYCT 98 (160)
T ss_dssp CEECCCTTTCCC------EEEETTEEEEC
T ss_pred CCCCCCCCCCCE------EEEeCCeEEEC
Confidence 458899999952 33345779986
No 83
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=23.79 E-value=22 Score=23.62 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=10.3
Q ss_pred CceEEEecCCCCC
Q 029839 108 GKSFVCNFCGLDG 120 (187)
Q Consensus 108 g~~w~C~~C~~~~ 120 (187)
...|+|.+|...|
T Consensus 15 ~~tWVCpICsfsN 27 (76)
T 2j9u_B 15 VSTWVCPICMVSN 27 (76)
T ss_dssp CEEEECTTTCCEE
T ss_pred ccceECccccccC
Confidence 4579999999843
No 84
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.52 E-value=17 Score=16.98 Aligned_cols=10 Identities=40% Similarity=1.125 Sum_probs=7.7
Q ss_pred eEEEecCCCC
Q 029839 110 SFVCNFCGLD 119 (187)
Q Consensus 110 ~w~C~~C~~~ 119 (187)
.|.|..|+..
T Consensus 2 p~~C~~C~k~ 11 (26)
T 2lvu_A 2 PYVCERCGKR 11 (26)
Confidence 4789999873
No 85
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.71 E-value=29 Score=17.50 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=8.5
Q ss_pred CceEEEecCCC
Q 029839 108 GKSFVCNFCGL 118 (187)
Q Consensus 108 g~~w~C~~C~~ 118 (187)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elt_A 7 GKPYKCPQCSY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCCCCCCCCc
Confidence 45688999987
No 86
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.62 E-value=99 Score=19.92 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=22.5
Q ss_pred CCceecCCCCeEEcCceEEEeCCceE-----EEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w-----~C~~C~~ 118 (187)
....+|..|+-.|-... +...++.| +|..|+.
T Consensus 23 ~~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~ 59 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAV-VKARDKYRHPECFVCADCNL 59 (89)
T ss_dssp CSCCBCTTTCCBCCSCC-EESSSCEECTTTCCCSSSCC
T ss_pred CcCCCcccCCCEecccE-EEECCceECccCCEecCCCC
Confidence 45689999999887633 44455555 6777776
No 87
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=23.61 E-value=31 Score=25.44 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=18.9
Q ss_pred CCceecCCCCeEEcCceEEEeCCceEEEecCCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~ 119 (187)
-...||.+|+.+.-| . ...|+-|+..
T Consensus 45 L~~~rC~~CG~~~fP------P--r~~Cp~C~s~ 70 (145)
T 2gnr_A 45 IIGSKCSKCGRIFVP------A--RSYCEHCFVK 70 (145)
T ss_dssp CEEEECTTTCCEEES------C--CSEETTTTEE
T ss_pred EEEEEECCCCcEEeC------C--CCCCCCCCCC
Confidence 447899999998433 2 2479999874
No 88
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.60 E-value=29 Score=17.61 Aligned_cols=11 Identities=45% Similarity=1.228 Sum_probs=8.7
Q ss_pred CceEEEecCCC
Q 029839 108 GKSFVCNFCGL 118 (187)
Q Consensus 108 g~~w~C~~C~~ 118 (187)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elq_A 7 GKPFKCSLCEY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCccCCCCCc
Confidence 45689999987
No 89
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.60 E-value=27 Score=22.61 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=21.7
Q ss_pred CCceecCCCCeEEcCceEEEeCCceE-----EEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w-----~C~~C~~ 118 (187)
....+|.+|+--|-+--.+...++.| +|..|+.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~ 50 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEA 50 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCC
Confidence 45789999998875432233445554 7888876
No 90
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.21 E-value=21 Score=19.48 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=9.5
Q ss_pred CCceEEEecCCC
Q 029839 107 NGKSFVCNFCGL 118 (187)
Q Consensus 107 ~g~~w~C~~C~~ 118 (187)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2eml_A 9 GEKPYECSVCGK 20 (46)
T ss_dssp SCCSEECSSSCC
T ss_pred CCCCeeCCCcCC
Confidence 456689999987
No 91
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.16 E-value=27 Score=16.41 Aligned_cols=9 Identities=33% Similarity=1.221 Sum_probs=7.3
Q ss_pred eEEEecCCC
Q 029839 110 SFVCNFCGL 118 (187)
Q Consensus 110 ~w~C~~C~~ 118 (187)
.|.|..|+.
T Consensus 3 ~~~C~~C~k 11 (28)
T 2kvf_A 3 PYSCSVCGK 11 (28)
T ss_dssp SEECSSSCC
T ss_pred CccCCCCCc
Confidence 478999987
No 92
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.09 E-value=29 Score=17.58 Aligned_cols=11 Identities=45% Similarity=1.280 Sum_probs=8.6
Q ss_pred CceEEEecCCC
Q 029839 108 GKSFVCNFCGL 118 (187)
Q Consensus 108 g~~w~C~~C~~ 118 (187)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2els_A 7 GKIFTCEYCNK 17 (36)
T ss_dssp CCCEECTTTCC
T ss_pred CCCEECCCCCc
Confidence 45688999987
No 93
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.74 E-value=23 Score=21.36 Aligned_cols=33 Identities=18% Similarity=0.486 Sum_probs=21.6
Q ss_pred CCceecCCCCeEEcC------ceEEEeCCceEEEecCCC
Q 029839 86 SGLVRCCCCRGYRNP------FMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp------~~~~~~~g~~w~C~~C~~ 118 (187)
..+..|..|+.-..- +.....+.+.|.|.+|+.
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~ 45 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSF 45 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCC
Confidence 457889999865432 222223456699999998
No 94
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.33 E-value=26 Score=16.37 Aligned_cols=9 Identities=33% Similarity=0.910 Sum_probs=6.9
Q ss_pred eEEEecCCC
Q 029839 110 SFVCNFCGL 118 (187)
Q Consensus 110 ~w~C~~C~~ 118 (187)
.|.|..|+.
T Consensus 2 ~~~C~~C~k 10 (29)
T 2m0f_A 2 PLKCRECGK 10 (29)
T ss_dssp CEECTTTSC
T ss_pred CccCCCCCC
Confidence 478888886
No 95
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.24 E-value=14 Score=26.09 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=19.3
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
..-|..|+..|=|--.-..+...|.|.-|+.
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y 34 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDY 34 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCC
Confidence 3458888887655431112334688988887
No 96
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.19 E-value=22 Score=24.19 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=22.1
Q ss_pred CCCceecCCCCeE-EcCceEEE-eCCceEEEecCCC
Q 029839 85 ESGLVRCCCCRGY-RNPFMEFV-DNGKSFVCNFCGL 118 (187)
Q Consensus 85 ~~~~~RC~~C~ay-iNp~~~~~-~~g~~w~C~~C~~ 118 (187)
.-.++.|+.|+|- .+-.|... ...+.|.|+.|..
T Consensus 43 ~W~L~lC~~Cgs~gtH~~Cs~l~~~~~~weC~~C~~ 78 (85)
T 1weq_A 43 RWRLILCATCGSHGTHRDCSSLRPNSKKWECNECLP 78 (85)
T ss_dssp TTBCEECSSSCCCEECSGGGTCCTTCSCCCCTTTSC
T ss_pred CEEEEeCcccCCchhHHHHhCCcCCCCCEECCcCcc
Confidence 3568889988884 23344332 2466799998864
No 97
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.78 E-value=34 Score=17.41 Aligned_cols=11 Identities=27% Similarity=1.198 Sum_probs=8.4
Q ss_pred CceEEEecCCC
Q 029839 108 GKSFVCNFCGL 118 (187)
Q Consensus 108 g~~w~C~~C~~ 118 (187)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elp_A 7 GRAMKCPYCDF 17 (37)
T ss_dssp CCCEECSSSSC
T ss_pred CCCeECCCCCh
Confidence 45688998887
No 98
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=21.59 E-value=29 Score=23.63 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=24.2
Q ss_pred CCceecCCCCeEEcCceE-----EEeCCceEEEecCCCC
Q 029839 86 SGLVRCCCCRGYRNPFME-----FVDNGKSFVCNFCGLD 119 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~-----~~~~g~~w~C~~C~~~ 119 (187)
..++.|..|-.-...+|- -...| .|.|..|...
T Consensus 35 g~LL~CD~C~~~fH~~Cl~PpL~~~P~g-~W~C~~C~~~ 72 (88)
T 1fp0_A 35 GDLVMCNQCEFCFHLDCHLPALQDVPGE-EWSCSLCHVL 72 (88)
T ss_dssp SCCEECTTSSCEECTTSSSTTCCCCCSS-SCCCCSCCCC
T ss_pred CCEEECCCCCCceecccCCCCCCCCcCC-CcCCccccCC
Confidence 468999999887776663 12334 6999999874
No 99
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=21.56 E-value=41 Score=28.24 Aligned_cols=30 Identities=30% Similarity=0.660 Sum_probs=22.3
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
..+|..|+.+- +-..++......+|.-||.
T Consensus 21 ~~~Cp~C~~~~-~~lv~D~~~G~~vC~~CGl 50 (345)
T 4bbr_M 21 VLTCPECKVYP-PKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp -CCCSSCCCSS-CCEEEEGGGTEEEETTTCB
T ss_pred CCcCCCCCCCC-CceeEECCCCcEEeCCCCC
Confidence 46899999862 3344666666799999998
No 100
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.56 E-value=36 Score=17.19 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=8.6
Q ss_pred CceEEEecCCC
Q 029839 108 GKSFVCNFCGL 118 (187)
Q Consensus 108 g~~w~C~~C~~ 118 (187)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elv_A 7 GLLYDCHICER 17 (36)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCCCCC
Confidence 35688999987
No 101
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=21.39 E-value=42 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=20.4
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDG 120 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~~ 120 (187)
-.+|.+|++.|=| .++..+|+.|+...
T Consensus 140 ~a~~~~~g~~m~~------~~~~~~cp~~g~~e 166 (179)
T 3m7n_A 140 RALCSNCKTEMVR------EGDILKCPECGRVE 166 (179)
T ss_dssp ECBCTTTCCBCEE------CSSSEECSSSCCEE
T ss_pred EecccccCCceEE------CCCEEECCCCCCEE
Confidence 4788899988644 23679999999843
No 102
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.39 E-value=31 Score=16.19 Aligned_cols=9 Identities=33% Similarity=0.803 Sum_probs=7.1
Q ss_pred eEEEecCCC
Q 029839 110 SFVCNFCGL 118 (187)
Q Consensus 110 ~w~C~~C~~ 118 (187)
.+.|..|+.
T Consensus 2 ~~~C~~C~k 10 (29)
T 1rik_A 2 KFACPECPK 10 (29)
T ss_dssp CEECSSSSC
T ss_pred CccCCCCCc
Confidence 478888887
No 103
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=21.30 E-value=52 Score=19.91 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=18.7
Q ss_pred CceecCCCCeEEcCceEEEeCCceE-----EEecCCC
Q 029839 87 GLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (187)
Q Consensus 87 ~~~RC~~C~ayiNp~~~~~~~g~~w-----~C~~C~~ 118 (187)
...+|..|+--|..- .+...++.| +|..|+.
T Consensus 4 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~ 39 (66)
T 1nyp_A 4 GVPICGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEK 39 (66)
T ss_dssp CCCEETTTTEECCSC-EECCTTSBEETTTCBCTTTCC
T ss_pred CCCCCcccCCEecce-EEEECccccccCcCEECCCCC
Confidence 357888888876632 233344444 6777765
No 104
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.29 E-value=25 Score=19.17 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=9.5
Q ss_pred CCceEEEecCCC
Q 029839 107 NGKSFVCNFCGL 118 (187)
Q Consensus 107 ~g~~w~C~~C~~ 118 (187)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2em4_A 9 GQRPYECIECGK 20 (46)
T ss_dssp CSSSEECSSSCC
T ss_pred CCcCcCCCCCCC
Confidence 456689999988
No 105
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.14 E-value=15 Score=19.81 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=9.4
Q ss_pred CCceEEEecCCC
Q 029839 107 NGKSFVCNFCGL 118 (187)
Q Consensus 107 ~g~~w~C~~C~~ 118 (187)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (44)
T 2eoj_A 9 GENPYECCECGK 20 (44)
T ss_dssp SCCSCEETTTTE
T ss_pred CCcCeeCCCCCC
Confidence 445689999987
No 106
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=21.08 E-value=33 Score=25.16 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=19.0
Q ss_pred CCceecCCCCeEEcCceEEEeCCceEEEecCCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~ 119 (187)
--..||.+|+.+.-| . ...|+-|+..
T Consensus 45 L~~~rC~~CG~~~~P------P--r~~Cp~C~s~ 70 (145)
T 3irb_A 45 IIGSKCSKCGRIFVP------A--RSYCEHCFVK 70 (145)
T ss_dssp CEEEECTTTCCEEES------C--CSEETTTTEE
T ss_pred EEEEEeCCCCcEEcC------c--hhhCcCCCCC
Confidence 347899999998443 2 2579999874
No 107
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.07 E-value=29 Score=16.36 Aligned_cols=9 Identities=22% Similarity=0.940 Sum_probs=7.3
Q ss_pred eEEEecCCC
Q 029839 110 SFVCNFCGL 118 (187)
Q Consensus 110 ~w~C~~C~~ 118 (187)
.|.|..|+.
T Consensus 3 ~~~C~~C~k 11 (27)
T 2kvg_A 3 PYRCPLCRA 11 (27)
T ss_dssp TEEETTTTE
T ss_pred CcCCCCCCc
Confidence 478999986
No 108
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.03 E-value=25 Score=19.16 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=10.0
Q ss_pred eCCceEEEecCCC
Q 029839 106 DNGKSFVCNFCGL 118 (187)
Q Consensus 106 ~~g~~w~C~~C~~ 118 (187)
.+.+.|.|..|+.
T Consensus 8 ~~~k~~~C~~C~k 20 (46)
T 2ysp_A 8 TGEKPYKCEKCGK 20 (46)
T ss_dssp SSCCSEEETTTTE
T ss_pred CCCCCeECCCCCC
Confidence 3456799999997
No 109
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.94 E-value=47 Score=21.07 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=22.6
Q ss_pred CCceecCCCCeEEcCceEEEeCCceE-----EEecCCC
Q 029839 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (187)
Q Consensus 86 ~~~~RC~~C~ayiNp~~~~~~~g~~w-----~C~~C~~ 118 (187)
....+|..|+-.|-.- .+...++.| +|..|+.
T Consensus 13 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~ 49 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGT 49 (79)
T ss_dssp CCCCCCSSSCCCCCSS-CEECSSCEECTTTTSCSSSCC
T ss_pred CCCCccccCCCCccCc-EEEECcceeCcCcCeeCCCCC
Confidence 4578999999988763 345556666 5777776
No 110
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=20.66 E-value=69 Score=19.29 Aligned_cols=22 Identities=18% Similarity=0.535 Sum_probs=16.7
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
-..|..|+..+ |.+|+|..|.-
T Consensus 6 ~~~Cd~C~~~i---------g~R~~C~~C~d 27 (52)
T 1tot_A 6 VYTCNECKHHV---------ETRWHCTVCED 27 (52)
T ss_dssp CEEETTTTEEE---------SSEEEESSSSS
T ss_pred EEECCCCCCCC---------cceEEcCCCCC
Confidence 36799998751 46799999964
No 111
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.65 E-value=39 Score=17.39 Aligned_cols=11 Identities=27% Similarity=0.878 Sum_probs=8.5
Q ss_pred CceEEEecCCC
Q 029839 108 GKSFVCNFCGL 118 (187)
Q Consensus 108 g~~w~C~~C~~ 118 (187)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elm_A 7 GHLYYCSQCHY 17 (37)
T ss_dssp SCEEECSSSSC
T ss_pred CcCeECCCCCc
Confidence 45688999887
No 112
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=20.51 E-value=91 Score=18.77 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=19.0
Q ss_pred ceecCCCCeEEcCceEEEe------CCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVD------NGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~------~g~~w~C~~C~~ 118 (187)
-.+|.+|+.=---|.+.+. ....|+|.-|++
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~ 51 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGH 51 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCC
Confidence 4779999872222333322 124589999987
No 113
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.33 E-value=41 Score=26.83 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=12.0
Q ss_pred CCceecCCCCeEEc
Q 029839 86 SGLVRCCCCRGYRN 99 (187)
Q Consensus 86 ~~~~RC~~C~ayiN 99 (187)
..+++|.+||.+|=
T Consensus 220 ~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 220 GDMITCPYCGRILY 233 (256)
T ss_dssp SSCEECTTTCCEEE
T ss_pred CCEEECCCCCeeEE
Confidence 57999999999863
No 114
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=20.27 E-value=48 Score=23.87 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=12.9
Q ss_pred cCCCCceecCCCCeEE
Q 029839 83 FGESGLVRCCCCRGYR 98 (187)
Q Consensus 83 ~~~~~~~RC~~C~ayi 98 (187)
-|...++||.+|+..+
T Consensus 15 rGhv~~V~C~nCgr~v 30 (119)
T 2xzm_5 15 RGHTRTVPCTNCGRQV 30 (119)
T ss_dssp SSCCCEEECTTTCCEE
T ss_pred CCCCccEeeCCccccC
Confidence 4567799999999864
No 115
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=20.21 E-value=33 Score=23.14 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=21.7
Q ss_pred ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (187)
Q Consensus 88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~ 118 (187)
-++|..|+.. -.-|........|..|++
T Consensus 34 ~VkCp~C~~~---q~VFSha~t~V~C~~Cg~ 61 (82)
T 3u5c_b 34 DVKCPGCLNI---TTVFSHAQTAVTCESCST 61 (82)
T ss_dssp EEECTTSCSC---EEEESBCSSCCCCSSSCC
T ss_pred EEECCCCCCe---eEEEecCCeEEEccccCC
Confidence 4899999977 344556677789999998
No 116
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=20.19 E-value=29 Score=22.73 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=11.0
Q ss_pred CceecCCCCeEEcC
Q 029839 87 GLVRCCCCRGYRNP 100 (187)
Q Consensus 87 ~~~RC~~C~ayiNp 100 (187)
-|+||-.||..+.-
T Consensus 3 iPVRCFTCGkvi~~ 16 (70)
T 1twf_J 3 VPVRCFSCGKVVGD 16 (70)
T ss_dssp CCSBCTTTCCBCTT
T ss_pred CCeecCCCCCChHH
Confidence 37899999988754
No 117
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=20.16 E-value=40 Score=20.91 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=19.1
Q ss_pred eecCCCCeEEcCceEEEeCCceEEE
Q 029839 89 VRCCCCRGYRNPFMEFVDNGKSFVC 113 (187)
Q Consensus 89 ~RC~~C~ayiNp~~~~~~~g~~w~C 113 (187)
=.|..|+.|++.---+..+|+ +.|
T Consensus 8 CaC~~C~c~Vs~~eai~~dGK-~YC 31 (55)
T 1jjd_A 8 CACEPCLCNVDPSKAIDRNGL-YYC 31 (55)
T ss_dssp CSSTTCCCCBCTTTSEESSSC-EES
T ss_pred ecCCCCeeEechHHhhhcCCe-EEe
Confidence 457899999998777888887 555
No 118
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.10 E-value=23 Score=19.32 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=9.7
Q ss_pred CCceEEEecCCC
Q 029839 107 NGKSFVCNFCGL 118 (187)
Q Consensus 107 ~g~~w~C~~C~~ 118 (187)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2ytp_A 9 GERHYECSECGK 20 (46)
T ss_dssp CCCCEECSSSCC
T ss_pred CCCCeECCcCCc
Confidence 456699999998
No 119
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.04 E-value=25 Score=19.16 Aligned_cols=12 Identities=42% Similarity=0.913 Sum_probs=9.4
Q ss_pred CCceEEEecCCC
Q 029839 107 NGKSFVCNFCGL 118 (187)
Q Consensus 107 ~g~~w~C~~C~~ 118 (187)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2em2_A 9 GEKPFKCKECGK 20 (46)
T ss_dssp CCCSEECSSSCC
T ss_pred CCCCEECCcCCc
Confidence 445689999987
Done!