BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029840
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZR|R Chain R, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 188
Score = 317 bits (812), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 151/188 (80%), Positives = 174/188 (92%), Gaps = 1/188 (0%)
Query: 1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
MGIDL+AGG++K++KR APKS+D+YLKLLVKLYRFLVRRT S F+ VILKRLFMSK N+P
Sbjct: 1 MGIDLVAGGRNKRTKRVAPKSDDVYLKLLVKLYRFLVRRTKSKFNAVILKRLFMSKTNRP 60
Query: 61 PMSLSRLTKFMKGKEDK-IAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGEC 119
P+S+ RL+ FMKGKE+K IAVVVGT+TDD+R+ EVPA+KVTALRFTETARARI AGGEC
Sbjct: 61 PLSMRRLSNFMKGKEEKNIAVVVGTITDDMRIQEVPAMKVTALRFTETARARIINAGGEC 120
Query: 120 LTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGK 179
LTFDQLALRAP G+NT+LLRGPKNAREAV+HFG APGVPHSHTKPYVRSKGRKFE+ RG+
Sbjct: 121 LTFDQLALRAPTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKVRGR 180
Query: 180 RNSRGFRV 187
RNSRGF+V
Sbjct: 181 RNSRGFKV 188
>pdb|2ZKR|OO Chain o, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 188
Score = 213 bits (543), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/176 (66%), Positives = 141/176 (80%), Gaps = 3/176 (1%)
Query: 1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
MG+D I K +K +R PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+P
Sbjct: 1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRP 59
Query: 61 PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
P+SLSR+ + MK G+E+K AVVVGTVTDD+R+ EVP LKV ALR + AR+RI KAGG+
Sbjct: 60 PLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGK 119
Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 174
LTFDQLAL +P G+ TVLL GP+ RE +HFG APG PHSHTKPYVRSKGRKFE
Sbjct: 120 ILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175
>pdb|3IZS|R Chain R, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|R Chain R, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|R Chain R, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|Q Chain Q, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|Q Chain Q, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|Q Chain Q, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 186
Score = 213 bits (541), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 113/189 (59%), Positives = 144/189 (76%), Gaps = 5/189 (2%)
Query: 1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
MGID + + RTAPKS+++YLKLLVKLY FL RRTD+ F+KV+LK LF+SK+N+P
Sbjct: 1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRP 60
Query: 61 PMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
P+S+SR+ + +K G +K VVVGTVTDD R++E P V ALRFT ARA+I KAGGE
Sbjct: 61 PVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGE 120
Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
C+T DQLA+RAP GQNT++LRGP+N+REAV+HFG PH P + S GRKFERARG
Sbjct: 121 CITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILSTGRKFERARG 177
Query: 179 KRNSRGFRV 187
+R S+GF+V
Sbjct: 178 RRRSKGFKV 186
>pdb|4A17|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 181
Score = 193 bits (491), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/180 (57%), Positives = 131/180 (72%), Gaps = 3/180 (1%)
Query: 1 MGIDLIAGGKS-KKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNK 59
M IDL G+ K+S KS ++Y KLL+KLY+FLVRRTDS F++ ILKRL S++NK
Sbjct: 1 MAIDLHKQGRVVKRSVVRQTKSTNVYHKLLIKLYKFLVRRTDSKFNQNILKRLSSSRLNK 60
Query: 60 PPMSLSRLTKFM-KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 118
P+SLSR+ K + + ++++ V TVT+D R+ VP L V AL+FTETAR RI AGG+
Sbjct: 61 FPLSLSRIVKNLNETNKEQVIVSTSTVTNDERLLTVPKLTVCALKFTETARKRILAAGGK 120
Query: 119 CLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 178
CLTFDQLAL+AP G N LLR PK +REA +H+G APG SH+ PYVRS+GRKFERA G
Sbjct: 121 CLTFDQLALKAPTGTNCFLLRAPK-SREAYRHWGKAPGQRGSHSAPYVRSEGRKFERAHG 179
>pdb|3ZF7|I Chain I, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 193
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/190 (52%), Positives = 137/190 (72%), Gaps = 9/190 (4%)
Query: 1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKP 60
MG+DL K K+ R S + Y+KLL+KLY+FL +RT+S F+K+I KRL S+ N+
Sbjct: 1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRA 60
Query: 61 PMSLSRLTKFM--------KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARI 112
P+SLSR+ M KGK+ IAV+VG V DD+R+ +PAL++ ALRF+++AR RI
Sbjct: 61 PISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERI 120
Query: 113 EKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRK 172
AGGECLTFDQLA+ AP G+NT+LLRG K+ RE+VKHFG A GVP SH KP+V S+G++
Sbjct: 121 TGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGKE 179
Query: 173 FERARGKRNS 182
+R+ +R++
Sbjct: 180 RQRSSKRRHA 189
>pdb|3JYW|O Chain O, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 121
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 98/121 (80%), Gaps = 2/121 (1%)
Query: 21 SNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKI 78
S+++YLKLLVKLY FL RRTD+ F+KV+LK LF+SK+N+PP+S+SR+ + +K G +K
Sbjct: 1 SDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKT 60
Query: 79 AVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLL 138
VVVGTVTDD R++E P V ALRFT ARA+I KAGGEC+T DQLA+RAP GQNT++L
Sbjct: 61 VVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLIL 120
Query: 139 R 139
R
Sbjct: 121 R 121
>pdb|1S1I|O Chain O, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 120
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 97/120 (80%), Gaps = 2/120 (1%)
Query: 22 NDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIA 79
+++YLKLLVKLY FL RRTD+ F+KV+LK LF+SK+N+PP+S+SR+ + +K G +K
Sbjct: 1 DNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTV 60
Query: 80 VVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR 139
VVVGTVTDD R++E P V ALRFT ARA+I KAGGEC+T DQLA+RAP GQNT++LR
Sbjct: 61 VVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILR 120
>pdb|3J21|P Chain P, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 120
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
Query: 15 KRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKV---ILKRLFMSKVNKPPMSLSRLTKFM 71
KRT P + L +L R+L ++++ K+ + RL + + +++S++ ++
Sbjct: 2 KRTGPTDPN-----LRRLIRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRY- 55
Query: 72 KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL 131
+ ++ VV G+V ++ + + V A +F+ETAR +I +AGGE +T ++L R P
Sbjct: 56 -ANDGEMIVVPGSVLGAGKLEK--KVIVAAWKFSETARRKIIEAGGEAITIEELIERNPT 112
Query: 132 GQNTVLL 138
G ++
Sbjct: 113 GSGVRIM 119
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
pdb|2NYY|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|B Chain B, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 1295
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 353 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 382
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 357 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 386
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 355 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 384
>pdb|2ISE|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form A
pdb|2ISE|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form A
pdb|2ISG|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form B
pdb|2ISG|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form B
pdb|2ISH|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form C
pdb|2ISH|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form C
Length = 421
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 353 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 382
>pdb|3NF3|A Chain A, Crystal Structure Of BontA LC WITH JTH-Nb-7239 Peptide
Length = 425
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 354 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 383
>pdb|4ELC|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA C134 MUTANT WITH MTSEA MODIFIED CYS-165
Length = 445
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 374 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 403
>pdb|4EL4|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA C134SC165S DOUBLE MUTANT
Length = 445
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 374 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 403
>pdb|4EJ5|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA WILD-Type
Length = 445
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 374 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 403
>pdb|3DS9|A Chain A, A Potent Peptidomimetic Inhibitor Of Botulinum Neurotoxin
Serotype A Has A Very Different Conformation Than
Snap-25 Substrate
pdb|3DSE|A Chain A, A Potent Peptidomimetic Inhibitor Of Botulinum Neurotoxin
Serotype A Has A Very Different Conformation Than
Snap-25 Substrate
Length = 417
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 354 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 383
>pdb|2ILP|A Chain A, Clostridium Botulinum Serotype A Light Chain Inhibited By
4- Chlorocinnamic Hydroxamate
pdb|2ILP|B Chain B, Clostridium Botulinum Serotype A Light Chain Inhibited By
4- Chlorocinnamic Hydroxamate
pdb|2IMA|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By 2,4-Dichlorocinnamic Hydroxamate
pdb|2IMA|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By 2,4-Dichlorocinnamic Hydroxamate
pdb|2IMB|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By L-arginine Hydroxamate
pdb|2IMB|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By L-arginine Hydroxamate
pdb|2IMC|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain,
Residues 1-424
pdb|2IMC|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain,
Residues 1-424
Length = 444
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 374 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 403
>pdb|3DDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With A Snap-25 Peptide
pdb|3DDB|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With A Substrate Analog Peptide
pdb|3QW5|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rrgf
pdb|3QW6|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rygc
pdb|3QW7|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rrfc
pdb|3QW8|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Crgc
Length = 430
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 354 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 383
>pdb|3QIX|A Chain A, Crystal Structure Of BontA LC WITH ZINC BOUND
pdb|3QIX|B Chain B, Crystal Structure Of BontA LC WITH ZINC BOUND
pdb|3QIY|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-1
pdb|3QIZ|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-2
pdb|3QJ0|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-3
Length = 430
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 354 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 383
>pdb|3BWI|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With An Acetate Ion Bound At The
Active Site
pdb|3C88|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgc
pdb|3C89|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgm
pdb|3C8A|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgl
pdb|3C8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgi
Length = 432
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 354 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 383
>pdb|4HEV|A Chain A, Clostridium Botulinum Serotype A Light Chain Inhibited By
Adamantane Hydroxamate
pdb|4HEV|B Chain B, Clostridium Botulinum Serotype A Light Chain Inhibited By
Adamantane Hydroxamate
Length = 441
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 370 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 399
>pdb|2W2D|A Chain A, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
pdb|2W2D|C Chain C, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
Length = 450
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 358 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 387
>pdb|1XTF|A Chain A, Neurotoxin BontA E224Q Y366F MUTANT
pdb|1XTF|B Chain B, Neurotoxin BontA E224Q Y366F MUTANT
Length = 427
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 353 FVKFFKVLNRKTFLNFDKAVFKINIVPKVN 382
>pdb|3FHN|A Chain A, Structure Of Tip20p
pdb|3FHN|B Chain B, Structure Of Tip20p
pdb|3FHN|C Chain C, Structure Of Tip20p
pdb|3FHN|D Chain D, Structure Of Tip20p
Length = 706
Score = 26.6 bits (57), Expect = 8.1, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 13 KSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRL 52
K+ PKS+ ++KL+ K+Y +L D +FD ++ +L
Sbjct: 386 KNPEDFPKSSQNFVKLINKIYDYLEPFYDLDFDLLVRYKL 425
>pdb|3BOK|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A Apo-
Enzyme
pdb|3BON|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A With
Zn2+ Cofactor Bound
pdb|3BOO|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A With
An Inhibitory Peptide Bound
Length = 425
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 354 FVKFFKVLNRKTYLNFDKAVFKINIVPKVN 383
>pdb|1XTG|A Chain A, Crystal Structure Of Neurotoxin BontA COMPLEXED WITH
Synaptosomal-Associated Protein 25
Length = 424
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 LVKLYRFLVRRTDSNFDKVILKRLFMSKVN 58
VK ++ L R+T NFDK + K + KVN
Sbjct: 353 FVKFFKVLNRKTFLNFDKAVFKINIVPKVN 382
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,128,263
Number of Sequences: 62578
Number of extensions: 184057
Number of successful extensions: 360
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 30
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)