Query 029840
Match_columns 187
No_of_seqs 205 out of 968
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 06:42:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_R 60S ribosomal protein L 100.0 8.5E-82 2.9E-86 522.0 15.0 187 1-187 1-188 (188)
2 2zkr_o 60S ribosomal protein L 100.0 4.5E-79 1.5E-83 506.3 14.5 186 1-187 1-188 (188)
3 3izc_R 60S ribosomal protein R 100.0 6.4E-78 2.2E-82 498.1 11.5 184 1-187 1-186 (186)
4 4a17_N RPL18, 60S ribosomal pr 100.0 8.8E-76 3E-80 483.6 13.1 178 1-179 1-180 (181)
5 3jyw_O 60S ribosomal protein L 100.0 1.2E-45 4.2E-50 287.7 8.1 119 21-139 1-121 (121)
6 3j21_P 50S ribosomal protein L 100.0 2.1E-43 7.3E-48 274.5 12.4 120 16-139 1-120 (120)
7 1vq8_O 50S ribosomal protein L 100.0 9.1E-39 3.1E-43 247.1 14.4 115 20-139 2-116 (116)
8 3r8s_L 50S ribosomal protein L 99.7 5.4E-18 1.9E-22 135.1 -0.5 75 40-120 52-142 (143)
9 3v2d_P 50S ribosomal protein L 99.6 2.3E-16 7.9E-21 126.6 -0.3 75 40-122 54-148 (150)
10 2zjr_I 50S ribosomal protein L 99.5 1.4E-16 4.7E-21 128.4 -4.2 80 41-122 53-143 (156)
11 3j21_L 50S ribosomal protein L 99.5 7E-15 2.4E-19 117.5 5.0 73 47-121 57-146 (147)
12 1vq8_L 50S ribosomal protein L 99.5 2.5E-15 8.5E-20 122.0 2.1 77 43-122 43-144 (165)
13 2zkr_l 60S ribosomal protein L 99.4 3.1E-14 1.1E-18 113.3 2.1 74 48-122 53-147 (148)
14 3bbo_N Ribosomal protein L15; 99.4 1.2E-15 4.1E-20 131.6 -9.7 81 40-122 117-220 (257)
15 4a17_K L29, RPL27A, 60S riboso 99.3 1.2E-12 4.3E-17 104.7 3.2 74 47-122 54-148 (149)
16 3o58_Y 60S ribosomal protein L 99.1 1.3E-11 4.4E-16 98.9 0.4 62 59-122 70-148 (149)
17 3iz5_O 60S ribosomal protein L 98.9 1.1E-11 3.6E-16 98.9 -7.9 61 59-121 70-142 (144)
No 1
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=100.00 E-value=8.5e-82 Score=522.02 Aligned_cols=187 Identities=80% Similarity=1.283 Sum_probs=158.2
Q ss_pred CceeeccCCccccCCCCCCCCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhccCC-CcEE
Q 029840 1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKE-DKIA 79 (187)
Q Consensus 1 mg~d~~~~~~~~~~~rk~~~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~~~-~k~v 79 (187)
|||||+++++++++.|+.|+||||||++||++|+|+||+|++|||++||+|||||+++|+||||++|++++++++ ++++
T Consensus 1 mgid~~~~~~~~~~~r~~~kstN~yL~~Liklyr~larrt~apf~r~V~KRLf~sr~~r~pVnLsrL~r~~k~~e~gk~V 80 (188)
T 3iz5_R 1 MGIDLVAGGRNKRTKRVAPKSDDVYLKLLVKLYRFLVRRTKSKFNAVILKRLFMSKTNRPPLSMRRLSNFMKGKEEKNIA 80 (188)
T ss_dssp CCSHHHHHHTSCCCCCCCSCCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHSCTTTCCEEEHHHHHTTSCSSSTTCEE
T ss_pred CccccccccccccccCCCCCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHcCCccccCcccHHHHHHHhccccCCCEE
Confidence 999999988999999999999999999999999999999999999999999999999999999999999998544 8999
Q ss_pred EEEeeecCCceeeeecCeEEEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEeecCCchhHHhhhhCCCCCCCC
Q 029840 80 VVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPH 159 (187)
Q Consensus 80 vv~gKVLg~G~l~~vpkl~V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~g~~~~r~~~~hfg~a~g~~~ 159 (187)
|+++||||||+|+++|+|+|||+.||++|+++||+|||+|++||||+++||+|+||+||+||+++||||+|||+|||+||
T Consensus 81 Vv~gKVLg~G~L~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~dqLa~~~P~G~nv~ll~g~~~~rea~khfg~a~g~p~ 160 (188)
T 3iz5_R 81 VVVGTITDDMRIQEVPAMKVTALRFTETARARIINAGGECLTFDQLALRAPTGENTILLRGPKNAREAVRHFGKAPGVPH 160 (188)
T ss_dssp EEEEEEECCCCSSCCSSEEEEEEECCHHHHHHHHTTSEEEEEHHHHHHHCTTCCSEEECCCCSSSSTTSSCCSSSCCCSS
T ss_pred EEEEEEcCCceEcccCCEEEEEeecCHHHHHHHHHcCCEEEEHHHHHHhCCCCCceEEEecCCchHHHHHHhccCCCCCC
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCcchhhhccccccCCCCC
Q 029840 160 SHTKPYVRSKGRKFERARGKRNSRGFRV 187 (187)
Q Consensus 160 s~~~p~v~skgrk~e~~r~~~~~~~~k~ 187 (187)
|||+|||+|||||||+|||||+|||||+
T Consensus 161 s~~~p~v~skgrkfe~argrr~s~~~k~ 188 (188)
T 3iz5_R 161 SHTKPYVRSKGRKFEKVRGRRNSRGFKV 188 (188)
T ss_dssp SCC-------------------------
T ss_pred CCCCCceeccccchhhhhccccccccCC
Confidence 9999999999999999999999999996
No 2
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.5e-79 Score=506.27 Aligned_cols=186 Identities=66% Similarity=1.090 Sum_probs=113.7
Q ss_pred CceeeccCCccccCCCCCCCCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhh--ccCCCcE
Q 029840 1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFM--KGKEDKI 78 (187)
Q Consensus 1 mg~d~~~~~~~~~~~rk~~~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~--~~~~~k~ 78 (187)
|||||++ +++++..|+.|+||||||++||++|+|+||+|++|||++||||||+|+++|++|||++|++++ +++++++
T Consensus 1 mg~d~~~-~~~~~~~r~~~~s~n~~l~~Lvk~yr~larrt~apl~rrlpKRgF~sr~~y~~VNLs~L~~~~~~~g~~~~i 79 (188)
T 2zkr_o 1 MGVDIRH-NKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKT 79 (188)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHSCTTTSCEEEHHHHHSCSSSCCSTTSE
T ss_pred Cceeeec-CcccccccCCCCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHhhCCCccceeeeeHHHHHHHhhhcCCCCcE
Confidence 9999999 458999999999999999999999999999999999999999999999999999999999976 3346778
Q ss_pred EEEEeeecCCceeeeecCeEEEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEeecCCchhHHhhhhCCCCCCC
Q 029840 79 AVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVP 158 (187)
Q Consensus 79 vvv~gKVLg~G~l~~vpkl~V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~g~~~~r~~~~hfg~a~g~~ 158 (187)
+++++||||||+|++||+|+|+|++||++|+|+||+|||+|++||||+++||+|+||+||+||+++|||++|||+|||+|
T Consensus 80 iv~~~KVLg~GeL~kvpkLtV~A~~fSksArekIEaAGG~v~~idqla~~~P~G~n~~ll~g~~~~r~a~khfg~apg~p 159 (188)
T 2zkr_o 80 AVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTP 159 (188)
T ss_dssp EEEEEEEECSSCCCCCSSCCEEEEEECHHHHHHHHHHSSCEEEHHHHHHHCTTCCSEEEEC-------------------
T ss_pred EEeecEEECCceecccCCeEEEEeecCHHHHHHHHHcCCEEEEhHHHHHHCCCCCceEEEecCcchHHHHHhcCCCCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCcchhhhccccccCCCCC
Q 029840 159 HSHTKPYVRSKGRKFERARGKRNSRGFRV 187 (187)
Q Consensus 159 ~s~~~p~v~skgrk~e~~r~~~~~~~~k~ 187 (187)
||||+|||+|||||||+|||||+|||||+
T Consensus 160 ~s~~~p~v~skgrk~e~~rgrr~s~~~k~ 188 (188)
T 2zkr_o 160 HSHTKPYVRSKGRKFERARGRRASRGYKN 188 (188)
T ss_dssp -----------------------------
T ss_pred CCCCCCceeccccchhhhcccccccccCC
Confidence 99999999999999999999999999996
No 3
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=100.00 E-value=6.4e-78 Score=498.13 Aligned_cols=184 Identities=61% Similarity=1.018 Sum_probs=153.2
Q ss_pred CceeeccCCccccCCCCCCCCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhccC--CCcE
Q 029840 1 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGK--EDKI 78 (187)
Q Consensus 1 mg~d~~~~~~~~~~~rk~~~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~~--~~k~ 78 (187)
|||||...++++++.|+.|+||||||++||++|+|+||+|++|||++||+|||||+++|+|||||+|++++++. ++++
T Consensus 1 mgid~~~~~~~~~~~r~~~kstN~yL~~Lvklyr~larrt~apf~r~V~KRLf~sr~~r~~VnLsrI~r~~k~~g~~g~~ 80 (186)
T 3izc_R 1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKT 80 (186)
T ss_dssp CCSSHHHHHHSCCCCCCCSCCSSHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHSCTTTCCEEEHHHHHHHTTTTSSSSCE
T ss_pred CcccccccccccccCCCCCCCCCHHHHHHHHHHHHHHhhhCChHHHHHHHHHhCCCcccCcccHHHHHHHhhccCCCCCE
Confidence 99999554889999999999999999999999999999999999999999999999999999999999999854 6899
Q ss_pred EEEEeeecCCceeeeecCeEEEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEeecCCchhHHhhhhCCCCCCC
Q 029840 79 AVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVP 158 (187)
Q Consensus 79 vvv~gKVLg~G~l~~vpkl~V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~g~~~~r~~~~hfg~a~g~~ 158 (187)
+|+++||||||+|+++|+|+|||+.||++|+++||+|||+|++||||+++||+|+||+||+||+++|||++|||+| |
T Consensus 81 vVv~gKVLg~G~L~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~dqLa~~~P~G~nv~ll~g~~~~rea~khfg~a---p 157 (186)
T 3izc_R 81 VVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---P 157 (186)
T ss_dssp EEESSEEECCCCSSCCCCEEEEESCCCHHHHHHHHHHSEECCCSHHHHHHSTTTCSEEECCCCSSSSTTSSCCSSS---C
T ss_pred EEEEeEEecCceEcccCCEEEEEEecCHHHHHHHHHcCCEEEEHHHHHHHCCCCCCeEEeccCcchHHHHHhcCCC---C
Confidence 9999999999999977799999999999999999999999999999999999999999999999999999999977 9
Q ss_pred CCCCCCcccccCcchhhhccccccCCCCC
Q 029840 159 HSHTKPYVRSKGRKFERARGKRNSRGFRV 187 (187)
Q Consensus 159 ~s~~~p~v~skgrk~e~~r~~~~~~~~k~ 187 (187)
||||+|||+|||||||+|||||+|||||+
T Consensus 158 ~s~~~p~v~skgrkfe~argrr~s~~~k~ 186 (186)
T 3izc_R 158 HKGKAPRILSTGRKFERARGRRRSKGFKV 186 (186)
T ss_dssp CCCC-------------------------
T ss_pred CCCCCCceeccccchhhhhccccccccCC
Confidence 99999999999999999999999999996
No 4
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=100.00 E-value=8.8e-76 Score=483.63 Aligned_cols=178 Identities=58% Similarity=0.892 Sum_probs=170.5
Q ss_pred CceeeccCCc-cccCCCCCCCCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhccCC-CcE
Q 029840 1 MGIDLIAGGK-SKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKE-DKI 78 (187)
Q Consensus 1 mg~d~~~~~~-~~~~~rk~~~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~~~-~k~ 78 (187)
|||||.++++ ++++.|+.|+||||||++||++|+|+||+|++|||++||+|||||+++|+|||||+|++++++++ +++
T Consensus 1 mgid~~~~~~~~~~~~r~~~kstN~yL~~Lvklyr~larrt~apf~r~V~KRLf~sr~nr~pVnLsrI~r~~~~~e~gk~ 80 (181)
T 4a17_N 1 MAIDLHKQGRVVKRSVVRQTKSTNVYHKLLIKLYKFLVRRTDSKFNQNILKRLSSSRLNKFPLSLSRIVKNLNETNKEQV 80 (181)
T ss_dssp -CBCCGGGGCCCCCSSCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHSCCGGGSCCEEHHHHHHSCCHHHHHSE
T ss_pred CccccccccccccccccCCCCCCCHHHHHHHHHHHHHHhhcCChHHHHHHHHHcCCccccCcccHHHHHHHhccccCCCE
Confidence 9999996555 89999999999999999999999999999999999999999999999999999999999998433 889
Q ss_pred EEEEeeecCCceeeeecCeEEEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEeecCCchhHHhhhhCCCCCCC
Q 029840 79 AVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVP 158 (187)
Q Consensus 79 vvv~gKVLg~G~l~~vpkl~V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~g~~~~r~~~~hfg~a~g~~ 158 (187)
+|+++||||||+|+++|+++|||++||++|+++||+|||+|++||||+++||+|+||+||+||+ +||||+|||+|||+|
T Consensus 81 vVv~gKVLg~G~l~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~dqLa~~~P~G~nv~ll~g~~-~rea~khfg~a~g~p 159 (181)
T 4a17_N 81 IVSTSTVTNDERLLTVPKLTVCALKFTETARKRILAAGGKCLTFDQLALKAPTGTNCFLLRAPK-SREAYRHWGKAPGQR 159 (181)
T ss_dssp EEESSEEECCTTCCSCCCCEEECSEECHHHHHHHHTTTCEEECHHHHHHHCTTCTTEEEECCCC-CCSHHHHSSSCTTST
T ss_pred EEEEEEEcCCceEcccCCEEEEEeecCHHHHHHHHHcCCEEEEhHHHHHhCCCCCCeEEeeCCc-hHHHHHHhccCCCCC
Confidence 9999999999999988899999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCCCCcccccCcchhhhccc
Q 029840 159 HSHTKPYVRSKGRKFERARGK 179 (187)
Q Consensus 159 ~s~~~p~v~skgrk~e~~r~~ 179 (187)
||||+|||+|||||||+|||-
T Consensus 160 ~s~~~p~v~skgrk~e~arg~ 180 (181)
T 4a17_N 160 GSHSAPYVRSEGRKFERAHGL 180 (181)
T ss_dssp TCCCCCCCSSCSTTSSCSCCC
T ss_pred CCCCCCceecCCcchhhhcCC
Confidence 999999999999999999984
No 5
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=100.00 E-value=1.2e-45 Score=287.72 Aligned_cols=119 Identities=63% Similarity=1.026 Sum_probs=113.7
Q ss_pred CccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhcc--CCCcEEEEEeeecCCceeeeecCeE
Q 029840 21 SNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALK 98 (187)
Q Consensus 21 stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~--~~~k~vvv~gKVLg~G~l~~vpkl~ 98 (187)
||||||++||++|+|+||+|++|||++||||||||+++|++||||+|++++++ .+++++++++||||||+|+++|+++
T Consensus 1 s~n~~l~~lvkl~~~lar~t~apl~rrvpKRgF~sr~~~~~VnLs~L~~~~~~~g~~g~~vvv~~KVlg~G~l~~~~kl~ 80 (121)
T 3jyw_O 1 SDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTT 80 (121)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCCHHHHHHHHTTTSCSTTSCCBCHHHHHHHTTTTSCSSSEEEESSCBCCCSCCCSSSCCC
T ss_pred CCCHHHHHHHHHHHHHHhhcCChHHHHHHHHHCCCCCccceEEHHHHHHHhhccCCCCCEEEEEEEEcCCceEcccCCEE
Confidence 79999999999999999999999999999999999999999999999999873 3678888999999999999777999
Q ss_pred EEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEee
Q 029840 99 VTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR 139 (187)
Q Consensus 99 V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~ 139 (187)
|+|++||++|+++||+|||+|++||||++++|+|+||+||+
T Consensus 81 V~a~~fS~~A~~kIe~AGG~~~~~dql~~~~P~G~~~~llr 121 (121)
T 3jyw_O 81 VAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILR 121 (121)
T ss_dssp EECSSBCTTTTTHHHHHTCCBCCSTTHHHHCTTCSSEEEEC
T ss_pred EEEEecCHHHHHHHHHcCCEEEEHHHHHHHCCCCCCeEEeC
Confidence 99999999999999999999999999999999999999985
No 6
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.1e-43 Score=274.48 Aligned_cols=120 Identities=24% Similarity=0.384 Sum_probs=114.9
Q ss_pred CCCCCCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhccCCCcEEEEEeeecCCceeeeec
Q 029840 16 RTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVP 95 (187)
Q Consensus 16 rk~~~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~~~~k~vvv~gKVLg~G~l~~vp 95 (187)
|+.+.||||||++||++|+|+||+|++|||++||||||+|+++|++|||++|+++++ +++++++++||||+|+|+.
T Consensus 1 ~~~~~~~n~~l~~li~~~~~~~r~~~~Pl~rrlpKrgF~~r~~~~~VnL~~L~~~~~--~g~~i~~~vKVLg~G~l~~-- 76 (120)
T 3j21_P 1 MKRTGPTDPNLRRLIRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRYAN--DGEMIVVPGSVLGAGKLEK-- 76 (120)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHSCTTSSEEEEHHHHTTSSC--TTCEEEEEEEEECSSCCCS--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhccCCcHHHHHHhhcCCCCCcceeEEHHHHHHHHh--cCCEEEEEEEEcCCCeecC--
Confidence 456889999999999999999999999999999999999999999999999999986 6788888999999999997
Q ss_pred CeEEEEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEee
Q 029840 96 ALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR 139 (187)
Q Consensus 96 kl~V~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~ 139 (187)
+++|+|++||++|+++||+|||+|+++|||++++|+|+||+||+
T Consensus 77 kl~V~a~~fS~~A~ekIe~AGG~v~~~~qL~~~~p~g~~~~l~~ 120 (120)
T 3j21_P 77 KVIVAAWKFSETARRKIIEAGGEAITIEELIERNPTGSGVRIME 120 (120)
T ss_dssp CCEEEEEEECHHHHHHHTTTSSCEEESTTHHHHCSSCSSEEECC
T ss_pred CEEEEEeccCHHHHHHHHHcCCEEEEeHHHHHHCCCCCCeEEeC
Confidence 99999999999999999999999999999999999999999984
No 7
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=100.00 E-value=9.1e-39 Score=247.06 Aligned_cols=115 Identities=22% Similarity=0.348 Sum_probs=109.6
Q ss_pred CCccHHHHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCccchHHHhhhhccCCCcEEEEEeeecCCceeeeecCeEE
Q 029840 20 KSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKV 99 (187)
Q Consensus 20 ~stN~~l~~Li~llk~~ar~t~sp~~rrV~kRlf~~r~~~~~VNLs~L~~~~~~~~~k~vvv~gKVLg~G~l~~vpkl~V 99 (187)
.||||||++||++|+|+||+|++|||+|+||||++++++|++|||++|+++++ +++++++++||||+|+|++ +++|
T Consensus 2 ~~~n~~l~~li~~~~~~~r~~~~Pl~rRlPKrG~~~~~~~~~VnL~~L~~~~~--~g~~ilv~vKVLg~G~l~k--~l~V 77 (116)
T 1vq8_O 2 SKTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQ--EDETVVVPGKVLGSGVLQK--DVTV 77 (116)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSSCHHHHHHHHHHTSCTTTSEEEEHHHHHHHCC--TTSEEEEEEEEECCSCCCS--CCEE
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCHhhhcccCCCCCCceeeeEeHHHHHHHcc--CCCEEEEEEEEeeCCeecC--CEEE
Confidence 48999999999999999999999999999999988899999999999999876 6677777999999999998 9999
Q ss_pred EEEeccHHHHHHHHHhCCeEEeHHHHHHhCCCCCcEEEee
Q 029840 100 TALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLR 139 (187)
Q Consensus 100 ~A~~fS~sA~eKIekAGGki~t~dqL~~~~P~G~~v~ll~ 139 (187)
+|++||++|+|+||+| |+|+++|||+++||+|+||+||.
T Consensus 78 ~a~~fSk~A~ekIeaA-G~v~~~~~l~~~~p~g~~~~l~~ 116 (116)
T 1vq8_O 78 AAVDFSGTAETKIDQV-GEAVSLEQAIENNPEGSHVRVIR 116 (116)
T ss_dssp EEEEECHHHHHHHHHH-SEEEEHHHHHHHCTTCCSEEECC
T ss_pred EEEecCHHHHHHHHHc-CeEEEhHHHHHHCCCCCCeEEeC
Confidence 9999999999999999 99999999999999999999984
No 8
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=99.66 E-value=5.4e-18 Score=135.10 Aligned_cols=75 Identities=28% Similarity=0.265 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHhhcC--CCCCCccchHHHhhhhccCCCcEE--------------EEEeeecCCceeeeecCeEEEEEe
Q 029840 40 TDSNFDKVILKRLFMS--KVNKPPMSLSRLTKFMKGKEDKIA--------------VVVGTVTDDIRVYEVPALKVTALR 103 (187)
Q Consensus 40 t~sp~~rrV~kRlf~~--r~~~~~VNLs~L~~~~~~~~~k~v--------------vv~gKVLg~G~l~~vpkl~V~A~~ 103 (187)
-.+|||+|+|||+|.+ ++.|.+|||++|+++. +++| ...+||||+|+|+. +|+|.|++
T Consensus 52 GQ~Pl~rRlPK~GF~~~~~~~y~~VNL~~L~~~~----~~~I~~~~L~~~glv~~~~~~VKVLg~Gel~~--~l~V~a~~ 125 (143)
T 3r8s_L 52 GQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVE----GGVVDLNTLKAANIIGIQIEFAKVILAGEVTT--PVTVRGLR 125 (143)
T ss_dssp TSCCHHHHSCCCCCCCSTGGGEEECCSSSSSCSS----SSEEEHHHHGGGTSSCTTCCEEECCCCSCCCS--CCEEESSC
T ss_pred CCCccEEEccccccCCcccceeEEEEHHHhhhcc----CCeecHHHHHHcCccccCCCceEEeeCCcccc--cEEEEEEe
Confidence 3579999999999997 6789999999999863 2333 13799999999998 99999999
Q ss_pred ccHHHHHHHHHhCCeEE
Q 029840 104 FTETARARIEKAGGECL 120 (187)
Q Consensus 104 fS~sA~eKIekAGGki~ 120 (187)
||++|+++||+|||+|+
T Consensus 126 ~SksA~ekIEaAGG~v~ 142 (143)
T 3r8s_L 126 VTKGARAAIEAAGGKIE 142 (143)
T ss_dssp CCHHHHHHHHTTTCEEE
T ss_pred cCHHHHHHHHHcCCEEe
Confidence 99999999999999986
No 9
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=99.56 E-value=2.3e-16 Score=126.62 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=65.2
Q ss_pred CCChHHHHHHHHhhcC-------CCCCCccchHHHhhhhccCCCcEE-------------EEEeeecCCceeeeecCeEE
Q 029840 40 TDSNFDKVILKRLFMS-------KVNKPPMSLSRLTKFMKGKEDKIA-------------VVVGTVTDDIRVYEVPALKV 99 (187)
Q Consensus 40 t~sp~~rrV~kRlf~~-------r~~~~~VNLs~L~~~~~~~~~k~v-------------vv~gKVLg~G~l~~vpkl~V 99 (187)
-.+|||+|+|||+|.+ ++.|.+|||++|++ ++ + +| .+.+||||+|+|+ +|+|
T Consensus 54 GQ~Pl~rRlPK~GF~~~~~~~~~~~~y~~VNL~~L~~-~~---G-~I~~~~L~~~glv~~~~~VKvLg~G~l~---~v~V 125 (150)
T 3v2d_P 54 GRSTTLMRLPKRGMQGQVPGEIKRPRYQGVNLKDLAR-FE---G-EVTPELLVRAGLLKKGYRLKILGEGEAK---PLKV 125 (150)
T ss_dssp TSCCTTTTSCCCSCCCCTTCCCCCCCEEEEEHHHHTT-CC---S-EECHHHHHTTTSSCTTCEEEEECSSCCC---SCEE
T ss_pred CCCccEEEcCccCccCccccccccceEEEEEHHHHhh-cC---C-cccHHHHHHCCCcccccceEEEecCCcc---cEEE
Confidence 3579999999999998 67899999999998 43 2 22 1379999999988 8999
Q ss_pred EEEeccHHHHHHHHHhCCeEEeH
Q 029840 100 TALRFTETARARIEKAGGECLTF 122 (187)
Q Consensus 100 ~A~~fS~sA~eKIekAGGki~t~ 122 (187)
.|..||++|+++||+|||+|+++
T Consensus 126 ~a~~~S~~A~~kIe~aGG~v~~~ 148 (150)
T 3v2d_P 126 VAHAFSKSALEKLKAAGGEPVLL 148 (150)
T ss_dssp CBSCBCHHHHHHHHHTTCBCCBC
T ss_pred EEEEcCHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999875
No 10
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=99.53 E-value=1.4e-16 Score=128.43 Aligned_cols=80 Identities=18% Similarity=0.114 Sum_probs=66.8
Q ss_pred CChHHHHHHHHhhcC-CCCCCccchHHHhhhhccC-CCcEE---------EEEeeecCCceeeeecCeEEEEEeccHHHH
Q 029840 41 DSNFDKVILKRLFMS-KVNKPPMSLSRLTKFMKGK-EDKIA---------VVVGTVTDDIRVYEVPALKVTALRFTETAR 109 (187)
Q Consensus 41 ~sp~~rrV~kRlf~~-r~~~~~VNLs~L~~~~~~~-~~k~v---------vv~gKVLg~G~l~~vpkl~V~A~~fS~sA~ 109 (187)
.+|+|+++||++|.+ +..|++|||++|+++.++. +-+++ ...+||||+|+|+. +|+|.|..||++|+
T Consensus 53 Q~Pl~rrlPK~GF~n~~~~~~~VNL~~L~~l~~~~i~~~~L~~~gli~~~~~~vKVLG~G~l~~--~l~Vka~~fSk~A~ 130 (156)
T 2zjr_I 53 RSRLIARLPKRGFNNVGTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASGEISR--AVTVHVDAASAAAI 130 (156)
T ss_dssp SSSSTTTSCCCCCCCCCCCCCEECHHHHTTSCCCCCCTTTTHHHHHCCCCSSCCEECCCCCCCC--CCCCCCSEECHHHH
T ss_pred cCCCeEecCCCCCcCCceEEEeechhHHHhhhcCCcCHHHHHhCCcEeccccceEEeeCCccCc--CeEEEEEecCHHHH
Confidence 689999999999997 6779999999999875421 00111 13689999999997 99999999999999
Q ss_pred HHHHHhCCeEEeH
Q 029840 110 ARIEKAGGECLTF 122 (187)
Q Consensus 110 eKIekAGGki~t~ 122 (187)
|+||+|||+|+++
T Consensus 131 ekIEaAGG~v~~i 143 (156)
T 2zjr_I 131 KAVEAAGGRVVLP 143 (156)
T ss_dssp HHHGGGSCCCCCC
T ss_pred HHHHHcCCEEEEe
Confidence 9999999999754
No 11
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.52 E-value=7e-15 Score=117.48 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=61.3
Q ss_pred HHHHHhhcC----CCCCCccchHHHhhhhcc--------CCCcEEEEE-----eeecCCceeeeecCeEEEEEeccHHHH
Q 029840 47 VILKRLFMS----KVNKPPMSLSRLTKFMKG--------KEDKIAVVV-----GTVTDDIRVYEVPALKVTALRFTETAR 109 (187)
Q Consensus 47 rV~kRlf~~----r~~~~~VNLs~L~~~~~~--------~~~k~vvv~-----gKVLg~G~l~~vpkl~V~A~~fS~sA~ 109 (187)
+++|++|++ +.+|++|||++|+++++. .+++.+|+. +||||+|+|+. +|+|.|..||++|+
T Consensus 57 ~~pK~GF~n~~~~~~~~~~VNL~~L~~l~~~L~~~gli~~~~~~~vid~~~~GvKVLG~G~l~~--~v~Vka~~fS~~A~ 134 (147)
T 3j21_L 57 HLGKRGFSRPPEVQREVRVVNLKFIDEHLDELMQMGIAYEEGGKIIVDVTQFADKVLGTGKLTR--PLVIKARAFSPKAE 134 (147)
T ss_dssp CSCCCSCCCCTTTCCCCCEEEHHHHHHTTTTTTTSCCCSSSSBSEEEEGGGGCCEEECCSCCSS--CEEEEESEECHHHH
T ss_pred cCCcCCCCccccccceeEEEEHHHHHHHHHHHHHcCcccccCCcceecccccCcEEecCCccCc--CEEEEEEecCHHHH
Confidence 578999986 468999999999987652 123444444 89999999998 99999999999999
Q ss_pred HHHHHhCCeEEe
Q 029840 110 ARIEKAGGECLT 121 (187)
Q Consensus 110 eKIekAGGki~t 121 (187)
|+||+|||+|++
T Consensus 135 ekIeaaGG~v~~ 146 (147)
T 3j21_L 135 EKIKAAGGEAVL 146 (147)
T ss_dssp HHHHHTTCEEEE
T ss_pred HHHHHcCCEEEe
Confidence 999999999975
No 12
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=99.51 E-value=2.5e-15 Score=121.98 Aligned_cols=77 Identities=21% Similarity=0.225 Sum_probs=63.7
Q ss_pred hHHHHHHHHhhcC----CCCCCccchHHHhhhhcc---------CCCcEEE------------EEeeecCCceeeeecCe
Q 029840 43 NFDKVILKRLFMS----KVNKPPMSLSRLTKFMKG---------KEDKIAV------------VVGTVTDDIRVYEVPAL 97 (187)
Q Consensus 43 p~~rrV~kRlf~~----r~~~~~VNLs~L~~~~~~---------~~~k~vv------------v~gKVLg~G~l~~vpkl 97 (187)
||++ +||++|.+ +..|++|||++|+.++.. +++..+| ..+||||+|+|+. +|
T Consensus 43 pl~k-lPK~GF~~~~~~r~~~~~VNL~~L~~l~~~~~~~g~~~~~~~~~vId~~~L~~~gli~~~vKVLG~G~l~k--~l 119 (165)
T 1vq8_L 43 NHEP-LGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRH--EL 119 (165)
T ss_dssp TSCC-SCCCCCCCCGGGCCCEEEEEHHHHHHTTGGGTTSCCCC-----CEEEGGGTCTTCTTSSEEEEECCSCCCS--CC
T ss_pred eeeE-CCCCCCccCCcccceeeeEEHHHHHHHHHHhhhccccccCCCCeEECHHHHHHCCccCCceEEecCCccCC--CE
Confidence 8888 99999998 267999999999988620 1221133 3579999999998 99
Q ss_pred EEEEEeccHHHHHHHHHhCCeEEeH
Q 029840 98 KVTALRFTETARARIEKAGGECLTF 122 (187)
Q Consensus 98 ~V~A~~fS~sA~eKIekAGGki~t~ 122 (187)
+|.|..||++|+++||+|||+|+++
T Consensus 120 ~Vka~~fSk~A~ekIeaAGG~v~~i 144 (165)
T 1vq8_L 120 TLIADDFSEGAREKVEGAGGSVELT 144 (165)
T ss_dssp EEEESEECHHHHHHHHHTTCEEEEC
T ss_pred EEEEEecCHHHHHHHHHcCCEEEEe
Confidence 9999999999999999999999876
No 13
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.42 E-value=3.1e-14 Score=113.34 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=50.3
Q ss_pred HHHHhhcCC----C-CC-CccchHHHhhhhccC---CCc--E-----EE-----EEeeecCCceeeeecCeEEEEEeccH
Q 029840 48 ILKRLFMSK----V-NK-PPMSLSRLTKFMKGK---EDK--I-----AV-----VVGTVTDDIRVYEVPALKVTALRFTE 106 (187)
Q Consensus 48 V~kRlf~~r----~-~~-~~VNLs~L~~~~~~~---~~k--~-----vv-----v~gKVLg~G~l~~vpkl~V~A~~fS~ 106 (187)
+||++|++. . .| ++|||++|+.+.++. +-. . ++ .++||||+|+|++ .+|+|.|..||+
T Consensus 53 lpK~GF~~~~~~~~~~~~~~VNl~~L~~l~~~~~~~~~~~~l~~~~~vI~~~~~~~vKVLG~Gel~k-~~l~Vka~~fSk 131 (148)
T 2zkr_l 53 FGKVGMKHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSR 131 (148)
T ss_dssp ---------------CCCCEEETHHHHHHTTTTTSSCTTTTEEEHHHHSTTCSSSCCEEECCSCCCS-SCCEEEESEECH
T ss_pred CCCCCcCCCCccccceecceEEHHHHHhhhhcCcEEehhhhccccCCeEeccccCceEEecCCcccc-CCEEEEEEecCH
Confidence 999999982 1 34 899999999885421 111 1 11 1379999999985 599999999999
Q ss_pred HHHHHHHHhCCeEEeH
Q 029840 107 TARARIEKAGGECLTF 122 (187)
Q Consensus 107 sA~eKIekAGGki~t~ 122 (187)
+|+|+||+|||+|+++
T Consensus 132 ~A~ekIeaAGG~v~~~ 147 (148)
T 2zkr_l 132 RAEEKIKSVGGACVLV 147 (148)
T ss_dssp HHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHcCCEEEec
Confidence 9999999999999864
No 14
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.37 E-value=1.2e-15 Score=131.57 Aligned_cols=81 Identities=14% Similarity=0.172 Sum_probs=66.1
Q ss_pred CCChHHHHHHH-HhhcC-----CCCCCccchHHHhhh-hcc-C--CCc------E-------EEEEeeecCCceeeeecC
Q 029840 40 TDSNFDKVILK-RLFMS-----KVNKPPMSLSRLTKF-MKG-K--EDK------I-------AVVVGTVTDDIRVYEVPA 96 (187)
Q Consensus 40 t~sp~~rrV~k-Rlf~~-----r~~~~~VNLs~L~~~-~~~-~--~~k------~-------vvv~gKVLg~G~l~~vpk 96 (187)
-.+|||+++|| |+|.+ ++.|.+|||++|+++ +++ + +-+ + ....+||||+|+|+. +
T Consensus 117 GQmPl~rRlPK~rGF~n~~~~~r~~y~~VNL~kL~~lr~~eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~GeLtk--k 194 (257)
T 3bbo_N 117 GQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSK--K 194 (257)
T ss_dssp SCSSTTSCCCCCSSCCCCCSSCCSSSSCSCSSCCSCSSTTTTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSSCCCS--S
T ss_pred CCCcchhhcccccccCCccccCcceeeeEeHHHHhhcccCCCCEeCHHHHHhCCcccccccccCccEEEEeCCccCC--C
Confidence 34899999999 88886 468999999999974 431 1 000 1 113589999999998 9
Q ss_pred eEEEEEeccHHHHHHHHHhCCeEEeH
Q 029840 97 LKVTALRFTETARARIEKAGGECLTF 122 (187)
Q Consensus 97 l~V~A~~fS~sA~eKIekAGGki~t~ 122 (187)
|+|.|..||++|+|+||+|||+|+++
T Consensus 195 LtVkA~~fSksA~eKIEaAGG~v~~i 220 (257)
T 3bbo_N 195 LTIKAGAFSTSAKEKLEYAGCSLIVL 220 (257)
T ss_dssp CCCCSSCCTGGGTTSSTTTTCCEECC
T ss_pred eEEEEEecCHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999877
No 15
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=99.27 E-value=1.2e-12 Score=104.68 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=58.5
Q ss_pred HHHHHhhcC------CCCCCccchHHHhhhhcc--------CCC-cEEEE-----EeeecCCcee-eeecCeEEEEEecc
Q 029840 47 VILKRLFMS------KVNKPPMSLSRLTKFMKG--------KED-KIAVV-----VGTVTDDIRV-YEVPALKVTALRFT 105 (187)
Q Consensus 47 rV~kRlf~~------r~~~~~VNLs~L~~~~~~--------~~~-k~vvv-----~gKVLg~G~l-~~vpkl~V~A~~fS 105 (187)
...|++|++ +..+++|||++|+.++.+ .++ ..+++ .+||||+|+| +. +|+|.|..||
T Consensus 54 ~fGK~Gfr~~h~~~n~~~~~~VNLdkL~~l~~~~~~~~~~~~~~~~~vId~~~~g~~KvLG~G~l~~~--~v~v~a~~fS 131 (149)
T 4a17_K 54 YYGKLGMRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLPNQ--PVVVKAKYFS 131 (149)
T ss_dssp CSSCCSCCCSSCCCGGGCCCEEEGGGHHHHSCHHHHHHHHHCCSSCCEEEHHHHTCCEEECCSCCCSS--CCEEEESEEC
T ss_pred cCCCCCccCCCccCCcceeeEEEHHHHHHHhhhhcchhhhhhcCCceEEEeccCCeEEEecCCccCCC--CEEEEEeecC
Confidence 346788876 234689999999887642 122 33454 5899999999 76 9999999999
Q ss_pred HHHHHHHHHhCCeEEeH
Q 029840 106 ETARARIEKAGGECLTF 122 (187)
Q Consensus 106 ~sA~eKIekAGGki~t~ 122 (187)
++|+|+||+|||+|+++
T Consensus 132 ~~A~~kIe~aGG~~~~~ 148 (149)
T 4a17_K 132 KTAERRIVAVGGACVLT 148 (149)
T ss_dssp HHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHcCCEEEEe
Confidence 99999999999999763
No 16
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V
Probab=99.08 E-value=1.3e-11 Score=98.94 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=50.3
Q ss_pred CCccchHHHhhhhccC----------CCc-EEEE-----EeeecCCcee-eeecCeEEEEEeccHHHHHHHHHhCCeEEe
Q 029840 59 KPPMSLSRLTKFMKGK----------EDK-IAVV-----VGTVTDDIRV-YEVPALKVTALRFTETARARIEKAGGECLT 121 (187)
Q Consensus 59 ~~~VNLs~L~~~~~~~----------~~k-~vvv-----~gKVLg~G~l-~~vpkl~V~A~~fS~sA~eKIekAGGki~t 121 (187)
.++|||++|..++.+. +++ .+++ ++||||+|+| +. +|+|.|..||++|+++||+|||+|+.
T Consensus 70 ~~~INldkL~~lv~~~~~~~~a~~~~~~~~~vID~~~~g~vKVLG~G~l~~~--~v~Vka~~fS~~A~ekIe~aGG~~~~ 147 (149)
T 3o58_Y 70 KPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPNV--PVIVKARFVSKLAEEKIRAAGGVVEL 147 (149)
T ss_dssp CCSTTTTHHHHCSSCCSCSSCTTSSTTSSCCBCCCSSSCSCCCCCCCCCCSC--CEEECSSCCTTTTHHHHGGGSCEEEC
T ss_pred cceEEHHHHHHHhHHHHhhhhhhhccCCCCcEEEEecccceEEEcCCccCCC--CEEEEEeecCHHHHHHHHHcCCEEEE
Confidence 4799999998876421 122 2332 5899999999 76 99999999999999999999999976
Q ss_pred H
Q 029840 122 F 122 (187)
Q Consensus 122 ~ 122 (187)
+
T Consensus 148 ~ 148 (149)
T 3o58_Y 148 I 148 (149)
T ss_dssp C
T ss_pred c
Confidence 3
No 17
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_O
Probab=98.86 E-value=1.1e-11 Score=98.95 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=49.8
Q ss_pred CCccchHHHhhhhccC----CCcE-EE-----EEeeecCCcee--eeecCeEEEEEeccHHHHHHHHHhCCeEEe
Q 029840 59 KPPMSLSRLTKFMKGK----EDKI-AV-----VVGTVTDDIRV--YEVPALKVTALRFTETARARIEKAGGECLT 121 (187)
Q Consensus 59 ~~~VNLs~L~~~~~~~----~~k~-vv-----v~gKVLg~G~l--~~vpkl~V~A~~fS~sA~eKIekAGGki~t 121 (187)
.++|||++|+.++.+. +++. ++ -.+||||+|+| +. +|+|.|..||++|+|+||+|||+|++
T Consensus 70 ~~~VNl~kL~~lv~~~~a~~~~~~~vIDl~~~G~~KvLG~G~l~~~~--~v~Vka~~fS~~A~ekIe~aGG~v~~ 142 (144)
T 3iz5_O 70 CPAVNVERLWSMVPAEAGAGAGKAPVIDVTQFGYTKVLGKGMLPPER--PIVVKAKLISKVAEKKIKAAGGAVLL 142 (144)
T ss_dssp CEEEGGGTSTTCTTSSEEEEECCSCCCSCCEEEESEECHHHHSTTCT--TCCCEECGGGSSCSCCCSSCCCCCCC
T ss_pred cceEEHHHHHHHhHHhhhccCCCceEEEeeccCcEEEeCCCccCCcc--CEEEEEeecCHHHHHHHHHcCCEEEE
Confidence 4699999999887521 1222 22 25899999999 76 99999999999999999999999975
Done!