BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029844
         (186 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J3R|A Chain A, The Crystal Structure Of The Bet3-Trs31 Heterodimer.
 pdb|2J3T|A Chain A, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23
           Complex.
 pdb|2J3W|D Chain D, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex.
 pdb|2J3W|E Chain E, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex
          Length = 182

 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 128/165 (77%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct: 14  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 73

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 74  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 133

Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 134 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 178


>pdb|1WC8|A Chain A, The Crystal Structure Of Mouse Bet3p
          Length = 180

 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 128/165 (77%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct: 12  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 72  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131

Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176


>pdb|1SZ7|A Chain A, Crystal Structure Of Human Bet3
          Length = 200

 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 128/165 (77%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DF
Sbjct: 21  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 80

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 81  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 140

Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 141 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 185


>pdb|2CFH|A Chain A, Structure Of The Bet3-Tpc6b Core Of Trapp
 pdb|2CFH|B Chain B, Structure Of The Bet3-Tpc6b Core Of Trapp
          Length = 194

 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 128/165 (77%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DF
Sbjct: 26  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 85

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 86  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 145

Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 146 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 190


>pdb|1WC9|A Chain A, The Crystal Structure Of Truncated Mouse Bet3p
          Length = 165

 Score =  202 bits (514), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 93/160 (58%), Positives = 126/160 (78%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct: 5   KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 64

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 65  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 124

Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQV 176
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++
Sbjct: 125 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRI 164


>pdb|3KXC|A Chain A, Mutant Transport Protein
          Length = 194

 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 92/165 (55%), Positives = 127/165 (76%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV R  DF
Sbjct: 26  KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRAHDF 85

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 86  RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 145

Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
            GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct: 146 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 190


>pdb|2C0J|A Chain A, Crystal Structure Of The Bet3-Trs33 Heterodimer
          Length = 161

 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 93/159 (58%), Positives = 124/159 (77%)

Query: 20  NAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET 79
           ++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRET
Sbjct: 1   SSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRET 60

Query: 80  AEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGV 139
           A+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV
Sbjct: 61  ADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGV 120

Query: 140 IRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPE 178
           +RGALEMV M  E  +++D L+GD   E++++ ++++ +
Sbjct: 121 LRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIED 159


>pdb|2PWN|A Chain A, Crystal Structure Of Bet3 Homolog (13277653) From Mus
           Musculus At 2.04 A Resolution
          Length = 192

 Score =  186 bits (472), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 113/151 (74%)

Query: 17  ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
           ++ ++ELFTLTYGA V QL  D E  E+VNKQLD+ GYNIG+RLI++FLA+SNV RC DF
Sbjct: 24  KKXSSELFTLTYGALVTQLCKDYENDEDVNKQLDRXGYNIGVRLIEDFLARSNVGRCHDF 83

Query: 77  RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
           RETA+VIAKV FK +LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L
Sbjct: 84  RETADVIAKVAFKXYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 143

Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYE 167
            GV+RGALE V    E  +++D L+GD   E
Sbjct: 144 CGVLRGALEXVQXAVEAKFVQDTLKGDGVTE 174


>pdb|3CUE|D Chain D, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
 pdb|3CUE|E Chain E, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
 pdb|3CUE|J Chain J, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
 pdb|3CUE|K Chain K, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
 pdb|3CUE|P Chain P, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
 pdb|3CUE|Q Chain Q, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
 pdb|3CUE|V Chain V, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
 pdb|3CUE|W Chain W, Crystal Structure Of A Trapp Subassembly Activating The
           Rab Ypt1p
          Length = 193

 Score =  169 bits (428), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 125/180 (69%), Gaps = 3/180 (1%)

Query: 9   GDAIFAN-VERVNAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLA 66
           G+ I+ N  E++N ELFTLTYG+ V QL  D E +  +VN  L  MGYNIG RLI++FLA
Sbjct: 14  GEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLA 73

Query: 67  KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-D 125
           ++ + RC +  +T+EV++K  FK+FL +T  ++NW  +    S+IL++NPL DFVELP D
Sbjct: 74  RTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMD 133

Query: 126 TCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 185
             + L+Y NIL GV++G+LEMV +  +V ++ D+LRGD   E++VKL + + +E P  +D
Sbjct: 134 AMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193


>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And
           Leishmania Donovani Ornithine Decarboxylases By
           3-Aminooxy- 1-Aminopropane
 pdb|2ON3|B Chain B, A Structural Insight Into The Inhibition Of Human And
           Leishmania Donovani Ornithine Decarboxylases By
           3-Aminooxy- 1-Aminopropane
          Length = 461

 Score = 29.6 bits (65), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 24  FTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDE--FLAKSNVTRCVDFRETAE 81
            ++ +GAT+R     LE  +E+N  +  + +++G    D   F+   +  RCV      +
Sbjct: 166 LSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCV-----FD 220

Query: 82  VIAKVGFKMFL 92
           + A+VGF M+L
Sbjct: 221 MGAEVGFSMYL 231


>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And
           Leishmania Donovani Ornithine Decarboxylases By
           3-Aminooxy-1-Aminopropane
 pdb|2OO0|B Chain B, A Structural Insight Into The Inhibition Of Human And
           Leishmania Donovani Ornithine Decarboxylases By
           3-Aminooxy-1-Aminopropane
          Length = 471

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 24  FTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDE--FLAKSNVTRCVDFRETAE 81
            ++ +GAT+R     LE  +E+N  +  + +++G    D   F+   +  RCV      +
Sbjct: 176 LSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCV-----FD 230

Query: 82  VIAKVGFKMFL 92
           + A+VGF M+L
Sbjct: 231 MGAEVGFSMYL 241


>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
           Angstroms Resolution
 pdb|1D7K|B Chain B, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
           Angstroms Resolution
          Length = 421

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 24  FTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDE--FLAKSNVTRCVDFRETAE 81
            ++ +GAT+R     LE  +E+N  +  + +++G    D   F+   +  RCV      +
Sbjct: 160 LSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCV-----FD 214

Query: 82  VIAKVGFKMFL 92
           + A+VGF M+L
Sbjct: 215 MGAEVGFSMYL 225


>pdb|1YDG|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|B Chain B, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|C Chain C, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|D Chain D, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|E Chain E, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|F Chain F, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|G Chain G, Crystal Structure Of Trp Repressor Binding Protein Wrba
 pdb|1YDG|H Chain H, Crystal Structure Of Trp Repressor Binding Protein Wrba
          Length = 211

 Score = 28.5 bits (62), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 149 MKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
           +K   T  +DV+ G DA++  ++ +K VPE  P
Sbjct: 41  LKVRETAPQDVIDGQDAWKANIEAMKDVPEATP 73


>pdb|2J3R|B Chain B, The Crystal Structure Of The Bet3-Trs31 Heterodimer
          Length = 157

 Score = 27.7 bits (60), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 2/138 (1%)

Query: 19  VNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFR 77
           V+   F L +   V+   + +  V E+  +L  MG  +G  L+D  + +  N  R     
Sbjct: 5   VSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVL 64

Query: 78  ETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVD-FVELPDTCQGLYYCNIL 136
                I    +K   G  A       D      I+E  PL++ ++ +P     L      
Sbjct: 65  NILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFT 124

Query: 137 SGVIRGALEMVSMKTEVT 154
            G++   L       +VT
Sbjct: 125 GGIVEAILTHSGFPAKVT 142


>pdb|2J3W|B Chain B, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex.
 pdb|2J3W|F Chain F, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex
          Length = 188

 Score = 27.7 bits (60), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 2/138 (1%)

Query: 19  VNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFR 77
           V+   F L +   V+   + +  V E+  +L  MG  +G  L+D  + +  N  R     
Sbjct: 24  VSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVL 83

Query: 78  ETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVD-FVELPDTCQGLYYCNIL 136
                I    +K   G  A       D      I+E  PL++ ++ +P     L      
Sbjct: 84  NILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFT 143

Query: 137 SGVIRGALEMVSMKTEVT 154
            G++   L       +VT
Sbjct: 144 GGIVEAILTHSGFPAKVT 161


>pdb|1YRH|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|B Chain B, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|C Chain C, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|D Chain D, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|E Chain E, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|F Chain F, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|G Chain G, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
 pdb|1YRH|H Chain H, Crystal Structure Of Trp Repressor Binding Protein Wrba In
           Complex With Fmn
          Length = 211

 Score = 27.3 bits (59), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 149 MKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
           +K   T  +DV+ G DA++  ++  K VPE  P
Sbjct: 41  LKVRETAPQDVIDGQDAWKANIEAXKDVPEATP 73


>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
 pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
 pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
 pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
          Length = 346

 Score = 27.3 bits (59), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 47  KQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRET-AEVIAK 85
           K L ++ +   I L+D F  KSN++   DF ET  EVI K
Sbjct: 64  KLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIK 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,495,853
Number of Sequences: 62578
Number of extensions: 208730
Number of successful extensions: 447
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 23
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)