BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029844
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZI57|TPPC3_CHICK Trafficking protein particle complex subunit 3 OS=Gallus gallus
GN=TRAPPC3 PE=2 SV=1
Length = 180
Score = 208 bits (530), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 95/165 (57%), Positives = 129/165 (78%)
Query: 17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
+++N+ELFTLTYGA V QL D E E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct: 12 KKMNSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDF 71
Query: 77 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
RETA+VIAK+ FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L
Sbjct: 72 RETADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131
Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
GV+RGALEMV M +V +++D L+GD E+++K ++++ + P
Sbjct: 132 CGVLRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLP 176
>sp|Q86K94|TPPC3_DICDI Trafficking protein particle complex subunit 3 OS=Dictyostelium
discoideum GN=trappc3 PE=3 SV=2
Length = 186
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/182 (56%), Positives = 134/182 (73%), Gaps = 1/182 (0%)
Query: 1 MAPVGPRSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
M+ + G+ +F VE++N+ELFTLTYGA V QL+ D E++E+VN +L+QMGYNIGIRL
Sbjct: 1 MSKKYDKLGNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRL 60
Query: 61 IDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDF 120
I+EFLAKS + RC DF ETAEVIAKVGFKMFLGV A V +WDA+ + +EDNPL+DF
Sbjct: 61 IEEFLAKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDF 120
Query: 121 VELPDTCQG-LYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 179
VELPD + LYY NIL GV+RGALEMV MK + T+++ L D E++V L + + +
Sbjct: 121 VELPDQYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDM 180
Query: 180 YP 181
P
Sbjct: 181 IP 182
>sp|Q5U1Z2|TPPC3_RAT Trafficking protein particle complex subunit 3 OS=Rattus norvegicus
GN=Trappc3 PE=2 SV=1
Length = 180
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 128/165 (77%)
Query: 17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
+++++ELFTLTYGA V QL D E E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct: 12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71
Query: 77 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
RETA+VIAKV FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L
Sbjct: 72 RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131
Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
GV+RGALEMV M E +++D L+GD E++++ ++++ + P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176
>sp|O55013|TPPC3_MOUSE Trafficking protein particle complex subunit 3 OS=Mus musculus
GN=Trappc3 PE=1 SV=1
Length = 180
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 128/165 (77%)
Query: 17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
+++++ELFTLTYGA V QL D E E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DF
Sbjct: 12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71
Query: 77 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
RETA+VIAKV FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L
Sbjct: 72 RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 131
Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
GV+RGALEMV M E +++D L+GD E++++ ++++ + P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176
>sp|O43617|TPPC3_HUMAN Trafficking protein particle complex subunit 3 OS=Homo sapiens
GN=TRAPPC3 PE=1 SV=1
Length = 180
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 128/165 (77%)
Query: 17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
+++++ELFTLTYGA V QL D E E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DF
Sbjct: 12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 71
Query: 77 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNIL 136
RETA+VIAKV FKM+LG+T +++NW G S+ILE+NPLVDFVELPD L Y N+L
Sbjct: 72 RETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLL 131
Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 181
GV+RGALEMV M E +++D L+GD E++++ ++++ + P
Sbjct: 132 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176
>sp|Q9P6P5|BET3_SCHPO Transport protein particle subunit bet3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=bet3 PE=3 SV=1
Length = 183
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/180 (52%), Positives = 129/180 (71%), Gaps = 2/180 (1%)
Query: 7 RSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLA 66
+ G+ ++ V++VNAELF LTYG+ V QL D+ E+VN++LD+MGYNIGIRLI++FLA
Sbjct: 5 KIGEDVYKKVDKVNAELFVLTYGSIVAQLCKDMN-YEKVNEELDKMGYNIGIRLIEDFLA 63
Query: 67 KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-D 125
K+ RC DFRET E +AKVGFK+FL + +S+ DG + L+DNPL +FVELP D
Sbjct: 64 KTEWPRCADFRETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPAD 123
Query: 126 TCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 185
Q L+Y NIL GVIRGALEM+ M + ++RD+LRGD+ E++V L + + EE P D+
Sbjct: 124 ARQKLWYSNILCGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEEIPPGDE 183
>sp|P36149|BET3_YEAST Trafficking protein particle complex subunit BET3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET3 PE=1
SV=1
Length = 193
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 125/180 (69%), Gaps = 3/180 (1%)
Query: 9 GDAIFAN-VERVNAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLA 66
G+ I+ N E++N ELFTLTYG+ V QL D E + +VN L MGYNIG RLI++FLA
Sbjct: 14 GEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLA 73
Query: 67 KSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-D 125
++ + RC + +T+EV++K FK+FL +T ++NW + S+IL++NPL DFVELP D
Sbjct: 74 RTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMD 133
Query: 126 TCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 185
+ L+Y NIL GV++G+LEMV + +V ++ D+LRGD E++VKL + + +E P +D
Sbjct: 134 AMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193
>sp|Q4KL14|TPC3L_MOUSE Trafficking protein particle complex subunit 3-like protein OS=Mus
musculus GN=Bet3l PE=2 SV=1
Length = 181
Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 113/164 (68%), Gaps = 1/164 (0%)
Query: 17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
++N +LF LTYGA V QL D E+ E+VNK LD+MGYNIG RL+++FLA+S V RC +
Sbjct: 12 HKINKDLFVLTYGALVAQLCKDYEKDEDVNKYLDKMGYNIGTRLVEDFLARSCVRRCHSY 71
Query: 77 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNI 135
E +IA+V FKM+LG+T +V+ ++ S+IL NPL +FV ELP L YCN+
Sbjct: 72 SEIINIIAQVAFKMYLGITPSVTCHNSSRNEFSLILHKNPLAEFVEELPAGRSALCYCNL 131
Query: 136 LSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 179
L G+IRGALEMV + VT+++D L+GD E+ + LK++ E+
Sbjct: 132 LCGIIRGALEMVHLAANVTFLQDRLKGDSVTEIGITFLKKLDEK 175
>sp|Q5T215|TPC3L_HUMAN Trafficking protein particle complex subunit 3-like protein OS=Homo
sapiens GN=BET3L PE=1 SV=1
Length = 181
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 115/164 (70%), Gaps = 1/164 (0%)
Query: 17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDF 76
++N +LF LTYGA V QL D E+ E+VN+ LD+MGY IG RL+++FLA+S V RC +
Sbjct: 12 HKINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFLARSCVGRCHSY 71
Query: 77 RETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNI 135
E ++IA+V FKM+LG+T +V+ ++ S+ILE NPLV+FV ELP L YCN+
Sbjct: 72 SEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNL 131
Query: 136 LSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 179
L G+IRGALEMV + +VT+++D L+GD E+ + LK+ E+
Sbjct: 132 LCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEK 175
>sp|Q61IU9|TPPC3_CAEBR Probable trafficking protein particle complex subunit 3
OS=Caenorhabditis briggsae GN=CBG10062 PE=3 SV=1
Length = 181
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 94/141 (66%), Gaps = 3/141 (2%)
Query: 13 FANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVT 71
A+ ++++AELF LTYGA V ++L D E+ ++V QLD+MG+N+G RL D+FLAK +NV
Sbjct: 9 LADSKKMSAELFCLTYGAMVTEMLKDYEDPKDVTVQLDKMGFNMGTRLADDFLAKNANVP 68
Query: 72 RCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDT--CQG 129
RCVD R+ A+V+ + +LGV+AT S+W + I LE NPL + V++P G
Sbjct: 69 RCVDTRQIADVLCRNAIPCYLGVSATASSWSSGDREFIITLESNPLTELVQVPPNLVSAG 128
Query: 130 LYYCNILSGVIRGALEMVSMK 150
L Y +++G IRGALE V K
Sbjct: 129 LSYSQMIAGAIRGALEAVHFK 149
>sp|P34605|TPPC3_CAEEL Probable trafficking protein particle complex subunit 3
OS=Caenorhabditis elegans GN=ZK1098.5 PE=1 SV=1
Length = 181
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 95/141 (67%), Gaps = 3/141 (2%)
Query: 13 FANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVT 71
A+ ++++AELF LTYGA V ++L D E+ ++V QLD+MG+N+G RL D+FLAK +NV
Sbjct: 9 LADSKKMSAELFCLTYGAMVTEMLKDYEDPKDVTIQLDKMGFNMGTRLADDFLAKNANVP 68
Query: 72 RCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPD--TCQG 129
RCVD R+ A+V+ + +LG++AT S+W + +I LE NPL + V++P G
Sbjct: 69 RCVDTRQIADVLCRNAIPCYLGISATASSWTSGDREFTITLEANPLTELVQVPAHLVSAG 128
Query: 130 LYYCNILSGVIRGALEMVSMK 150
L Y +++G IRGALE V K
Sbjct: 129 LSYSQLIAGAIRGALEAVHFK 149
>sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium
discoideum GN=trappc5 PE=3 SV=1
Length = 186
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 3/162 (1%)
Query: 19 VNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFR 77
+N F + ++ ++ E+ K+L MGY+IG RL++ + N R
Sbjct: 20 INISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLCVREKNSKRETKLL 79
Query: 78 ETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVD-FVELPDTCQGLYYCNIL 136
I +K G A + +I ++N +V+ F+ LP L +
Sbjct: 80 GILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISLPKHLSSLNCAAFV 139
Query: 137 SGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPE 178
+G+I G L VT + G + V L+K PE
Sbjct: 140 AGIIEGILCSAEFPARVTAHNVAVEGKR-FPKTVILIKFNPE 180
>sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subunit 5 OS=Gallus gallus
GN=TRAPPC5 PE=2 SV=1
Length = 188
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 12/143 (8%)
Query: 19 VNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRE 78
V+ F L + V+ + V E+ +L Q+G+ +G+RL+D +++ R RE
Sbjct: 24 VSLSAFALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLDPLVSRERGGR----RE 79
Query: 79 TAEVIAKVGF------KMFLGVTATVSNWDADGTCCSIILEDNPLVD-FVELPDTCQGLY 131
T +V++ + F + G A D ++E PLV+ F+ +P L
Sbjct: 80 T-KVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTFISVPRENSTLN 138
Query: 132 YCNILSGVIRGALEMVSMKTEVT 154
+G++ L +VT
Sbjct: 139 CAAFTAGLVEAVLGASGFPAKVT 161
>sp|P09246|DNBI_VZVD Major DNA-binding protein OS=Varicella-zoster virus (strain Dumas)
GN=DBP PE=3 SV=1
Length = 1204
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 113 EDNPLVDFVELPDTCQG-----------LYYC-------NILSGVIRGALEMVSMKTEVT 154
E+ ++F+ LP TC G L YC N L+ +I GA + +
Sbjct: 871 EEYAAINFINLPPTCIGELAQFYMANLILKYCDHSQYLINTLTSIITGARRPRDPSSVLH 930
Query: 155 WIRDVLRGDDAYELQVKLLKQVPEEYP 181
WIR + E Q K L + E P
Sbjct: 931 WIRKDVTSAADIETQAKALLEKTENLP 957
>sp|Q4JQU6|DNBI_VZVO Major DNA-binding protein OS=Varicella-zoster virus (strain Oka
vaccine) GN=DBP PE=3 SV=1
Length = 1199
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 113 EDNPLVDFVELPDTCQG-----------LYYC-------NILSGVIRGALEMVSMKTEVT 154
E+ ++F+ LP TC G L YC N L+ +I GA + +
Sbjct: 871 EEYAALNFINLPPTCIGELAQFYMANLILKYCDHSQYLINTLTSIITGARRPRDPSSVLH 930
Query: 155 WIRDVLRGDDAYELQVKLLKQVPEEYP 181
WIR + E Q K L + E P
Sbjct: 931 WIRKDVTSAADIETQAKALLEKTENLP 957
>sp|P32345|PP4C_YEAST Serine/threonine-protein phosphatase 4 catalytic subunit
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PPH3 PE=1 SV=2
Length = 308
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 29 GATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGF 88
GA L +D E+V+ + G+ G R +D+FL K+N V+ A + G+
Sbjct: 187 GAMCDLLWSDPEDVDTWSLSPRGAGFLFGKREVDQFLEKNN----VELIARAHQLVMEGY 242
Query: 89 K-MFLGVTATVSNWDADGTC 107
K MF G TV W A C
Sbjct: 243 KEMFDGGLVTV--WSAPNYC 260
>sp|P15059|SPI2_VACCW Serine proteinase inhibitor 2 OS=Vaccinia virus (strain Western
Reserve) GN=SPI-2 PE=2 SV=2
Length = 345
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 14/124 (11%)
Query: 9 GDAIFANVERVNAELFTLTYGA---TVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFL 65
G+ +F + +++ L L YGA T QL +E+ E ++K Q NI + I++
Sbjct: 13 GENVFISPASISSVLTILYYGANGSTAEQLSKYVEKEENMDKVSAQ---NISFKSINKVY 69
Query: 66 AKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILED--NPLVDFVEL 123
+ + F+++ + K+G K DA C I E NPL+D
Sbjct: 70 GRYSAV----FKDS--FLRKIGDKFQTVDFTDCRTIDAINKCVDIFTEGKINPLLDEPLS 123
Query: 124 PDTC 127
PDTC
Sbjct: 124 PDTC 127
>sp|P42926|SPI2_RABPU Serine proteinase inhibitor 2 OS=Rabbitpox virus (strain Utrecht)
GN=SPI-2 PE=3 SV=1
Length = 345
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 14/124 (11%)
Query: 9 GDAIFANVERVNAELFTLTYGA---TVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFL 65
G+ +F + +++ L L YGA T QL +E+ E ++K Q NI + I++
Sbjct: 13 GENVFISPASISSVLTILYYGANGSTAEQLSKYVEKEENMDKVSAQ---NISFKSINKVY 69
Query: 66 AKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILED--NPLVDFVEL 123
+ + F+++ + K+G K DA C I E NPL+D
Sbjct: 70 GRYSAV----FKDS--FLRKIGDKFQTVDFTDCRTIDAINKCVDIFTEGKINPLLDEQLS 123
Query: 124 PDTC 127
PDTC
Sbjct: 124 PDTC 127
>sp|A3AB67|FH16_ORYSJ Formin-like protein 16 OS=Oryza sativa subsp. japonica GN=FH16 PE=2
SV=1
Length = 906
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 18 RVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFR 77
RVNA LF Y A V QL L +E +++L G + +L++ L N R
Sbjct: 566 RVNALLFKANYAAEVAQLKQSLRTLEMASQELRTKG--LFFKLLEAVLKAGNRMNAGTAR 623
Query: 78 ETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILED 114
A+ + V +T D T ++E+
Sbjct: 624 GNAQAFNLTALRKLSDVKST----DGSTTLLHFVIEE 656
>sp|A4IJC9|PTH_GEOTN Peptidyl-tRNA hydrolase OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=pth PE=3 SV=1
Length = 186
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 46 NKQLDQMGYNIGIRLIDEFLAKSNVT-RCVDFRETAEVIAKVGFKMFLGVTATVSNWDAD 104
K+ +Q +NIG +IDE + NV+ + FR + G K+ L T N +
Sbjct: 11 GKEYEQTRHNIGFFVIDELAKRWNVSLKTAKFRGLFGTASVFGEKVALCKPLTYMNLSGE 70
Query: 105 GTCCSIILEDNPLVDFVEL 123
C PL+DF ++
Sbjct: 71 CVC--------PLIDFYDI 81
>sp|Q8SU25|TRS31_ENCCU Putative trafficking protein particle complex subunit TRS31
OS=Encephalitozoon cuniculi (strain GB-M1) GN=TRS31 PE=1
SV=1
Length = 155
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 39 LEEVEEVNKQLDQMGYNIGIRLID--EFLAKSNVTRCVDFRETAEVIAKVG-----FKMF 91
+E+ ++ L +GY +GI+L++ F + ++ + +R T ++++ V +
Sbjct: 22 MEQRSDIEADLKSIGYEVGIKLLELCNFEREVRISTLL-YRATFDLLSLVSDSDRRVEKA 80
Query: 92 LGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKT 151
V T D+DG F+ +PD GL +I+ G+I+ AL +
Sbjct: 81 RDVDRTYLLTDSDGLFSR----------FISVPDEWNGLSADSIVCGMIQAALMASGYDS 130
Query: 152 EVT 154
EVT
Sbjct: 131 EVT 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,042,387
Number of Sequences: 539616
Number of extensions: 2586947
Number of successful extensions: 6862
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6838
Number of HSP's gapped (non-prelim): 22
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)