Query 029844
Match_columns 186
No_of_seqs 105 out of 479
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:48:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cue_D Transport protein parti 100.0 1.7E-66 5.9E-71 425.3 14.6 185 1-185 6-193 (193)
2 1sz7_A BET3 homolog, trafficki 100.0 8.9E-64 3E-68 410.8 17.3 177 10-186 14-190 (200)
3 2j3w_B ZGC 92866, trafficking 100.0 1E-54 3.5E-59 354.4 14.3 167 5-178 10-180 (188)
4 2c0j_B R32611_2; palmitate; HE 100.0 4.9E-50 1.7E-54 319.5 12.9 149 19-174 3-159 (160)
5 3cue_B Transport protein parti 100.0 3.4E-50 1.2E-54 343.2 11.8 168 7-178 45-276 (283)
6 2bjn_A TPC6, trafficking prote 100.0 9.6E-49 3.3E-53 312.0 13.3 151 18-174 3-159 (160)
7 2oso_A Hypothetical protein MJ 96.7 0.0075 2.6E-07 47.1 8.5 132 17-175 26-160 (163)
8 2kii_A Putative uncharacterize 94.6 0.5 1.7E-05 37.0 11.3 112 47-174 64-180 (181)
9 3tfg_A ALR2278 protein; heme-b 94.4 0.49 1.7E-05 37.3 10.9 92 71-175 92-184 (189)
10 3sj5_A Methyl-accepting chemot 91.7 1.3 4.4E-05 34.9 9.4 117 47-178 65-184 (188)
11 2vqg_A Uncharacterized protein 60.9 4.1 0.00014 29.2 1.9 20 130-149 15-34 (99)
12 2ve8_A FTSK, DNA translocase F 45.7 23 0.0008 23.9 3.7 39 27-67 11-51 (73)
13 1hks_A Heat-shock transcriptio 41.6 21 0.00072 25.3 3.1 61 82-150 7-68 (106)
14 1ty4_C Egg laying defective EG 31.1 13 0.00046 23.7 0.5 14 49-62 17-30 (57)
15 1jg5_A GTP cyclohydrolase I fe 25.7 17 0.00059 25.0 0.4 16 41-56 51-66 (83)
16 2bnk_A Early protein GP16.7; D 23.7 1.1E+02 0.0039 19.8 4.0 42 45-90 12-55 (67)
17 2q0o_C Probable transcriptiona 21.3 79 0.0027 22.8 3.2 38 17-54 60-97 (107)
No 1
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-66 Score=425.31 Aligned_cols=185 Identities=44% Similarity=0.819 Sum_probs=176.3
Q ss_pred CCCCCCCchhhhhh-chhhhHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHH
Q 029844 1 MAPVGPRSGDAIFA-NVERVNAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRE 78 (186)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~vs~~~f~~l~~e~V~q~~~~~~-~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld 78 (186)
|++++++.|+.+|+ ++.+||+|+|+|||+|||+||+++++ +.++++++|++|||+||.||+|++++|++.+||.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~~~le 85 (193)
T 3cue_D 6 QSRSLKAMGEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVK 85 (193)
T ss_dssp --CHHHHHHHHHHSSSSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHH
T ss_pred ccccccccchhhhccchhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhccCCCccCCHHH
Confidence 45667789999997 99999999999999999988999988 59999999999999999999999999988899999999
Q ss_pred HHHHHHHhhhhhhcCccccccccCCCCCeEEEeecCCcccccccCCCcc-CCCcchhhhhHHHHHHhhcCCceEEEEEee
Q 029844 79 TAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTC-QGLYYCNILSGVIRGALEMVSMKTEVTWIR 157 (186)
Q Consensus 79 ~l~fI~k~~Wk~lfgk~ad~l~~t~~~~~y~L~~d~npl~~fv~lp~~~-~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~ 157 (186)
+++||||++||++||||+|+|+||+|+++|+|++|+|||.+|+++|+++ +.++|++|+||||||||+++||+|+|||++
T Consensus 86 ~l~fI~k~~Wk~lfgk~~d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~~Vta~~~~ 165 (193)
T 3cue_D 86 TSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVS 165 (193)
T ss_dssp HHHHHHHHHHHHHSSCCCCCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCCEEEEEEee
Confidence 9999999999999999999999999999999967999999999999988 789999999999999999999999999999
Q ss_pred cccCCCCceEEEEEecccccccCCCCCC
Q 029844 158 DVLRGDDAYELQVKLLKQVPEEYPYKDD 185 (186)
Q Consensus 158 d~~~g~~~t~~~Ikf~~~~~~~~~~~~~ 185 (186)
|+++|+++|+|+|||.+++.|++|++||
T Consensus 166 d~l~g~~~t~~~Ikf~~~v~d~~~~~~~ 193 (193)
T 3cue_D 166 DILRGDSQTEIKVKLNRILKDEIPIGED 193 (193)
T ss_dssp CSSSSSSCBCEEEECCCCCSCCCCCTTC
T ss_pred ccCCCCCCEEEEEEEhhhhhcccCCCCC
Confidence 9999999999999999999999999986
No 2
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=100.00 E-value=8.9e-64 Score=410.79 Aligned_cols=177 Identities=53% Similarity=0.926 Sum_probs=155.4
Q ss_pred hhhhhchhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q 029844 10 DAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFK 89 (186)
Q Consensus 10 ~~~~~~~~~vs~~~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk 89 (186)
..+|++..+||+|+|+|||+|||+|++++.++.++++++|++|||+||.||+|++++|++.+||++++|+++||||++||
T Consensus 14 ~~~~~~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~~~R~~d~le~l~fI~k~~Wk 93 (200)
T 1sz7_A 14 ANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFK 93 (200)
T ss_dssp --------CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCHHHHHHHHHHTHHH
T ss_pred hhhhcccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhccCCCccCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999888888889999999999999999999999999998889999999999999999999
Q ss_pred hhcCccccccccCCCCCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEE
Q 029844 90 MFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQ 169 (186)
Q Consensus 90 ~lfgk~ad~l~~t~~~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~~t~~~ 169 (186)
++||||+|+|+||+++++|+|++|+|||.+|+++|++++.++|++|+||||||||+++||+|||++++|+++|+++|+|+
T Consensus 94 ~lFgk~ad~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~Vta~~~~d~l~g~~~t~~~ 173 (200)
T 1sz7_A 94 MYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIR 173 (200)
T ss_dssp HHHSCCCEEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSEEEE
T ss_pred HHhCCCCccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCEEEEEEEecccCCCCCEEEE
Confidence 99999999999999999999977999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCCCCCC
Q 029844 170 VKLLKQVPEEYPYKDDE 186 (186)
Q Consensus 170 Ikf~~~~~~~~~~~~~~ 186 (186)
|||.+++.|++|++||+
T Consensus 174 Ikf~~~v~~~~~~~~~~ 190 (200)
T 1sz7_A 174 MRFIRRIEDNLPAGEEA 190 (200)
T ss_dssp EEEEEEC----------
T ss_pred EEEhhhhhhccCCCcch
Confidence 99999999999999974
No 3
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=100.00 E-value=1e-54 Score=354.36 Aligned_cols=167 Identities=20% Similarity=0.280 Sum_probs=144.5
Q ss_pred CCCchhhhhhchhhhHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHhhcC-CCCCCCHHHHHHH
Q 029844 5 GPRSGDAIFANVERVNAELFTLTYGATVRQLLTDL-EEVEEVNKQLDQMGYNIGIRLIDEFLAKSN-VTRCVDFRETAEV 82 (186)
Q Consensus 5 ~~~~~~~~~~~~~~vs~~~f~~l~~e~V~q~~~~~-~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~-~~R~~~~ld~l~f 82 (186)
...+.++|=....+||+|+|+|||+||| ||+++. ++.++++++|++|||+||.||+|++++|+. .+||++++|+++|
T Consensus 10 ~~i~~~~l~~~~~~Vs~s~f~ll~~EiV-~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d~ld~l~f 88 (188)
T 2j3w_B 10 SAILERSLTRPKTEVSVSAFALLFSEMV-QYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLF 88 (188)
T ss_dssp -----------CCEEEHHHHHHHHHHHH-HHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHH
T ss_pred CccccCccccchhHhhHHHHHHHHHHHH-HHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCCHHHHHHH
Confidence 3445666666678899999999999999 777665 588999999999999999999999999975 4899999999999
Q ss_pred HHHhhhhhhcCcccccccc-CCCCCeEEEeecCCccc-ccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeeccc
Q 029844 83 IAKVGFKMFLGVTATVSNW-DADGTCCSIILEDNPLV-DFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVL 160 (186)
Q Consensus 83 I~k~~Wk~lfgk~ad~l~~-t~~~~~y~L~~d~npl~-~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~ 160 (186)
|||++||++||||+|+|+| |+|+++|+|+ |+||+. +|+++|+++++++|++|+||||||||+++||+|+|+...
T Consensus 89 I~k~~Wk~lfgk~~d~L~~st~~~~~y~i~-D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~--- 164 (188)
T 2j3w_B 89 IKVNVWKALFGKEADKLEQANDDDKTYYII-EKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW--- 164 (188)
T ss_dssp HHTHHHHHHHSSCCSEEEEETTEEEEEEEE-ESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEE---
T ss_pred HHHHHHHHHhCCCccccccccCCCCEEEEE-cCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEEEEe---
Confidence 9999999999999999997 8999999996 999996 699999999999999999999999999999988766655
Q ss_pred CCCCceEEEEEecccccc
Q 029844 161 RGDDAYELQVKLLKQVPE 178 (186)
Q Consensus 161 ~g~~~t~~~Ikf~~~~~~ 178 (186)
+|+|+|+|||+++|.+
T Consensus 165 --~~~t~f~Ikf~~~v~~ 180 (188)
T 2j3w_B 165 --HKGTTLMIKFDESVIA 180 (188)
T ss_dssp --SSSEEEEEEECHHHHH
T ss_pred --CCCEEEEEEecHHHHH
Confidence 5799999999999865
No 4
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=100.00 E-value=4.9e-50 Score=319.47 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcC
Q 029844 19 VNAELFTLTYGATVRQLLTDLE-----EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLG 93 (186)
Q Consensus 19 vs~~~f~~l~~e~V~q~~~~~~-----~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk~lfg 93 (186)
||.|+|+|||+|||+|++++.+ +.++++++|++|||+||.||+|+++ | +.+||++++|+++||||++||++||
T Consensus 3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r-~~~r~~d~ld~l~fI~k~~Wk~~fg 80 (160)
T 2c0j_B 3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-R-ETLAFREELDVLKFLCKDLWVAVFQ 80 (160)
T ss_dssp CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-G-GGGTTCCHHHHHHHHHTHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-h-ccCccCCHHHHHHHHHHHHHHHHhC
Confidence 6899999999999977777655 3567799999999999999999999 7 5789999999999999999999999
Q ss_pred ccccccccCCCCCeEEEeecCC-cccccccCCCccC--CCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEE
Q 029844 94 VTATVSNWDADGTCCSIILEDN-PLVDFVELPDTCQ--GLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQV 170 (186)
Q Consensus 94 k~ad~l~~t~~~~~y~L~~d~n-pl~~fv~lp~~~~--~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~~t~~~I 170 (186)
||+|+|+ |||+|+|+|+ |++ |+.+|+++|+++. .++|++|+||||||||+++||+|+|++.... .|.++|.|
T Consensus 81 k~~d~L~-t~~~~~y~l~-dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~~---~p~~~f~i 155 (160)
T 2c0j_B 81 KQMDSLR-TNHQGTYVLQ-DNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAA---LPVCKFQV 155 (160)
T ss_dssp SCCSEEE-ECSSSEEEEE-ETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEESS---TTCEEEEE
T ss_pred CcCccce-eCCCCEEEEE-CCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeecC---CCceEEEE
Confidence 9999999 8999999999 654 5799999999987 8999999999999999999999988886654 37899999
Q ss_pred Eecc
Q 029844 171 KLLK 174 (186)
Q Consensus 171 kf~~ 174 (186)
||.+
T Consensus 156 ~~~~ 159 (160)
T 2c0j_B 156 VIPK 159 (160)
T ss_dssp ECCC
T ss_pred Eeec
Confidence 9976
No 5
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-50 Score=343.20 Aligned_cols=168 Identities=14% Similarity=0.172 Sum_probs=140.1
Q ss_pred CchhhhhhchhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcC-----------------
Q 029844 7 RSGDAIFANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSN----------------- 69 (186)
Q Consensus 7 ~~~~~~~~~~~~vs~~~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~----------------- 69 (186)
.+.++|-.++.+||+|+|+|||+|||+|..++.++.+++++||+.|||+||.||+|++.+|+.
T Consensus 45 i~~~~l~~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~s~~ 124 (283)
T 3cue_B 45 IYSESLLFKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLSQNE 124 (283)
T ss_dssp ----------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC---------------------
T ss_pred ccccccccCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCccccccccccccccc
Confidence 356677778899999999999999997777777799999999999999999999999988853
Q ss_pred ---------------------------------------------CCCCCCHHHHHHHHHHhhhhhhcCcccccc-ccCC
Q 029844 70 ---------------------------------------------VTRCVDFRETAEVIAKVGFKMFLGVTATVS-NWDA 103 (186)
Q Consensus 70 ---------------------------------------------~~R~~~~ld~l~fI~k~~Wk~lfgk~ad~l-~~t~ 103 (186)
.+||.+++|+++||||++||++||||+|+| +|++
T Consensus 125 ss~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lektn~ 204 (283)
T 3cue_B 125 SSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSE 204 (283)
T ss_dssp ----------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEECSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhccccC
Confidence 389999999999999999999999999999 5556
Q ss_pred CCCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccC-CCCceEEEEEecccccc
Q 029844 104 DGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLR-GDDAYELQVKLLKQVPE 178 (186)
Q Consensus 104 ~~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~-g~~~t~~~Ikf~~~~~~ 178 (186)
++|+|||+.+++||++|++++ .++|++|+||||||||+++||+|+|++..+++. ++++|+|+|||+++|.|
T Consensus 205 ~~geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~~~~~T~~~IkF~~~v~~ 276 (283)
T 3cue_B 205 RDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLD 276 (283)
T ss_dssp CSSCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSSCTTCEEEECCCCHHHHH
T ss_pred CCCEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEEEEcccccCCCceEEEEEecHHHHh
Confidence 779999996667789999974 689999999999999999999987777777776 56799999999999865
No 6
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=100.00 E-value=9.6e-49 Score=311.99 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=122.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccH----HHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhhhcC
Q 029844 18 RVNAELFTLTYGATVRQLLTDLEEV----EEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLG 93 (186)
Q Consensus 18 ~vs~~~f~~l~~e~V~q~~~~~~~~----~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk~lfg 93 (186)
-+|.++|+|||+|||+|++++.++. ++++++|++|||+||.||+|+++ | +.+||++++|+++||||++|+++||
T Consensus 3 m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r-~~~r~~~~ld~lkfI~k~~Wk~~fg 80 (160)
T 2bjn_A 3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-K-DTARFKDELDIMKFICKDFWTTVFK 80 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHTHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-h-ccCccCCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999998778776644 36899999999999999999999 7 4799999999999999999999999
Q ss_pred ccccccccCCCCCeEEEeecCCcccccccCCCccC--CCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEE
Q 029844 94 VTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQ--GLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVK 171 (186)
Q Consensus 94 k~ad~l~~t~~~~~y~L~~d~npl~~fv~lp~~~~--~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~~t~~~Ik 171 (186)
||+|+|+ |||+|+|+|+.+++|+.+|+++|+++. .++|++|+||||||||+++||+|+|++....+ |.+.|.|+
T Consensus 81 k~~d~L~-t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~~~---p~~~F~i~ 156 (160)
T 2bjn_A 81 KQIDNLR-TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSM---PACKFQVM 156 (160)
T ss_dssp SCCSEEE-EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEESST---TCEEEEEE
T ss_pred CCCcccc-cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEecCC---CceEEEEE
Confidence 9999998 899999999944466899999999874 79999999999999999999999998887554 79999999
Q ss_pred ecc
Q 029844 172 LLK 174 (186)
Q Consensus 172 f~~ 174 (186)
+.+
T Consensus 157 ~~~ 159 (160)
T 2bjn_A 157 IQK 159 (160)
T ss_dssp EC-
T ss_pred ecc
Confidence 875
No 7
>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*
Probab=96.71 E-value=0.0075 Score=47.09 Aligned_cols=132 Identities=19% Similarity=0.185 Sum_probs=84.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhh-hcCc-
Q 029844 17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKM-FLGV- 94 (186)
Q Consensus 17 ~~vs~~~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~k~~Wk~-lfgk- 94 (186)
..|..+.|.+++-.+-..+.....+.. |.++||..|..+.+.+ +..+ +++|+. -+|+
T Consensus 26 ~~vp~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~-----------~~~l-----~~~~~~~G~G~l 84 (163)
T 2oso_A 26 KKIPMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKN-----------IEEL-----KKIFKLMNFGDL 84 (163)
T ss_dssp CCCCHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSS-----------HHHH-----HHHHHHHTCCEE
T ss_pred CcccHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHH-----------HHHH-----HHHHHHcCceEE
Confidence 568899999999987754433222222 9999999999886531 1122 345543 2332
Q ss_pred cccccccCCCCCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcC-CceEEEEEeecccCCCCceEEEEEec
Q 029844 95 TATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMV-SMKTEVTWIRDVLRGDDAYELQVKLL 173 (186)
Q Consensus 95 ~ad~l~~t~~~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~l-g~~~~v~~~~d~~~g~~~t~~~Ikf~ 173 (186)
.++......+.+.+++...++|...- | .+-.-++|.+|++.|+++.+ |=++.|.-++..-.|++.+.|.++..
T Consensus 85 ~i~~~~~~~~~~~~~i~v~~s~e~~~---~---~~~pvC~~~~G~~aG~~s~~~g~~~~~~E~~C~a~G~~~C~F~~~~~ 158 (163)
T 2oso_A 85 EIDENKILLKNPPYKIKLSNPPYQWV---S---KEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVFEVKEV 158 (163)
T ss_dssp ECCHHHHHHSCSCEEEEEESCSCTTC---C---CSSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEEEEEEE
T ss_pred EEEeccccccCCcEEEEEEeCceeec---C---CCCceeHHHHHHHHHHHHHHhCCCeEEEEeEeEcCCCCeEEEEEEEH
Confidence 22221000233557777677776532 2 23456788899999998864 66788888899999999999999987
Q ss_pred cc
Q 029844 174 KQ 175 (186)
Q Consensus 174 ~~ 175 (186)
+.
T Consensus 159 ~~ 160 (163)
T 2oso_A 159 DE 160 (163)
T ss_dssp C-
T ss_pred HH
Confidence 64
No 8
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=94.64 E-value=0.5 Score=37.01 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=71.9
Q ss_pred HHHHHhhhhHHHHHHHH---HHhhcCCCCCCCHHHHHHH-HHHhhhhhhcCcccccccc-CCCCCeEEEeecCCcccccc
Q 029844 47 KQLDQMGYNIGIRLIDE---FLAKSNVTRCVDFRETAEV-IAKVGFKMFLGVTATVSNW-DADGTCCSIILEDNPLVDFV 121 (186)
Q Consensus 47 ~~Le~mGy~IG~RLiE~---~~~r~~~~R~~~~ld~l~f-I~k~~Wk~lfgk~ad~l~~-t~~~~~y~L~~d~npl~~fv 121 (186)
+-|+.+|...=..+.+. ++ | ...-+.+++.-+.- |+..+=+.+-+-.+-..+. ..+++...|.+.
T Consensus 64 ~ll~~fG~~~~~~~~~~y~~~l-~-~g~~~~dFL~~ld~~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y~-------- 133 (181)
T 2kii_A 64 DVVKAFGQFLFNGLASRHTDVV-D-KFDDFTSLVMGIHDVIHLEVNKLYHEPSLPHINGQLLPNNQIALRYS-------- 133 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-G-GGSSHHHHHTTTTTTHHHHHHHHSSCSCCCEEEEEECSSSEEEEEEE--------
T ss_pred HHHHHHHHHHHHHHHHHhHHHH-h-cCCCHHHHHHHHhHHHHHHHHHhCCCCCCCeeEEEECCCCEEEEEEe--------
Confidence 56777776653333333 22 1 12234444444444 6666666676666655543 234555555422
Q ss_pred cCCCccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCCceEEEEEecc
Q 029844 122 ELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLK 174 (186)
Q Consensus 122 ~lp~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~~t~~~Ikf~~ 174 (186)
| ... +..+..|+|+|+-+.+|-++++...+....|.+...|.|++.+
T Consensus 134 S-----~R~-l~~~~~Gli~~~A~~f~~~v~i~~~~~~~~~~~h~~f~i~~~~ 180 (181)
T 2kii_A 134 S-----PRR-LCFCAEGLLFGAAQHFQQKIQISHDTCMHTGADHCMLIIELQN 180 (181)
T ss_dssp C-----TTC-CHHHHHHHHHHHHHHTTCCEEEEEEECGGGTCSSEEEEEEECC
T ss_pred c-----CCC-hHHHHHHHHHHHHHHhCCCeEEEEEeeccCCCCEEEEEEEecC
Confidence 2 123 8899999999999999999999877766667889999999875
No 9
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=94.44 E-value=0.49 Score=37.29 Aligned_cols=92 Identities=13% Similarity=0.076 Sum_probs=65.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcCccccccccC-CCCCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCc
Q 029844 71 TRCVDFRETAEVIAKVGFKMFLGVTATVSNWD-ADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSM 149 (186)
Q Consensus 71 ~R~~~~ld~l~fI~k~~Wk~lfgk~ad~l~~t-~~~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~ 149 (186)
.-..+++..+.-|+..+=+.+-+-.+-..+.+ .+++...|.+ .| ...-+..+..|+|+|+-+..|-
T Consensus 92 ~~l~dFL~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y--------~S-----~R~gl~~~~~Gli~~~A~~f~~ 158 (189)
T 3tfg_A 92 DSLPEFMENLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHY--------QS-----TRCGLAPMVLGLLHGLGKRFQT 158 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSTTCCCCEEEEEEEETTEEEEEE--------EC-----SSSSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHhHHHHHHHHHHhCCCCCCCeEEEEECCCCEEEEEE--------EC-----CCCCHHHHHHHHHHHHHHHhCC
Confidence 34677788888888877777766665555321 2244555442 12 1223789999999999999888
Q ss_pred eEEEEEeecccCCCCceEEEEEeccc
Q 029844 150 KTEVTWIRDVLRGDDAYELQVKLLKQ 175 (186)
Q Consensus 150 ~~~v~~~~d~~~g~~~t~~~Ikf~~~ 175 (186)
++++...+....+.+.++|.|++.+.
T Consensus 159 ~v~i~~~~~~~~~~~h~~f~i~~~~~ 184 (189)
T 3tfg_A 159 KVEVTQTAFRETGEDHDIFSIKYEDS 184 (189)
T ss_dssp EEEEEEEECTTTTSSSEEEEEEEEC-
T ss_pred CeEEEEEeccCCCCCeEEEEEEECCC
Confidence 99998888776777899999999765
No 10
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=91.69 E-value=1.3 Score=34.93 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=73.1
Q ss_pred HHHHHhhhhHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHhhhhhhcCccccccccC-CCCCeEEEeecCCcccccccCC
Q 029844 47 KQLDQMGYNIGIRLIDEFLAKS-NVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWD-ADGTCCSIILEDNPLVDFVELP 124 (186)
Q Consensus 47 ~~Le~mGy~IG~RLiE~~~~r~-~~~R~~~~ld~l~fI~k~~Wk~lfgk~ad~l~~t-~~~~~y~L~~d~npl~~fv~lp 124 (186)
+-|+.+|...=..+.+.+- +- ...-+.+++.-+.-|+..+=+.+-+-.+-..+.+ .++++..|.+ -|
T Consensus 65 ~ll~~fG~~~~~~~~~~y~-~~l~g~~~~dFL~~ld~lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y--------~S-- 133 (188)
T 3sj5_A 65 EIWREVGRQNIKTFSEWFP-SYFAGRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAKPVAKDAIEMEY--------VS-- 133 (188)
T ss_dssp HHHHHHHHHHHHHHHHHCG-GGTTTCCHHHHHHTHHHHHHHTTTTSTTCCCCEEEEEEEETTEEEEEE--------EE--
T ss_pred HHHHHHHHHHHHHHHHhHH-HHhCCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCEEEEEE--------EC--
Confidence 4566666655444444321 10 1234556666667777777666666655555422 2345555542 22
Q ss_pred CccCCCcchhhhhHHHHHHhhcCCceEEEEEeecccCCCC-ceEEEEEecccccc
Q 029844 125 DTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDD-AYELQVKLLKQVPE 178 (186)
Q Consensus 125 ~~~~~l~y~~~~cGiIrGaL~~lg~~~~v~~~~d~~~g~~-~t~~~Ikf~~~~~~ 178 (186)
.. -+..+..|+|+||-+-.|-++++.-++....++. ..+|+|+|++....
T Consensus 134 ---~R-gl~~~~~Gli~~aa~~f~~~v~i~~~~~~~~~~~~~~~~rl~f~~~~~~ 184 (188)
T 3sj5_A 134 ---KR-KMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPVFE 184 (188)
T ss_dssp ---TT-CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEEEESSCCSC
T ss_pred ---CC-CHHHHHHHHHHHHHHHhCCCeEEEEecccCCCCceEEEEEEEeeChhhh
Confidence 23 6789999999999999999998877765433322 77999999987543
No 11
>2vqg_A Uncharacterized protein CGL0972; transmembrane, membrane protein, porin, membrane, transport, transport; HET: GVT; 1.82A {Corynebacterium glutamicum} PDB: 2vqh_A 2vqk_A 2vql_A
Probab=60.91 E-value=4.1 Score=29.16 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=18.2
Q ss_pred CcchhhhhHHHHHHhhcCCc
Q 029844 130 LYYCNILSGVIRGALEMVSM 149 (186)
Q Consensus 130 l~y~~~~cGiIrGaL~~lg~ 149 (186)
.+|.+.-||++||+|...|+
T Consensus 15 ~~~dwv~Cgiv~t~L~~~gl 34 (99)
T 2vqg_A 15 PQYNWVACGILEGGLKAAGV 34 (99)
T ss_dssp GGGSHHHHHHHHHHHHHTTC
T ss_pred hccCcccccHHHHHHHHhhc
Confidence 47888999999999999988
No 12
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=45.70 E-value=23 Score=23.87 Aligned_cols=39 Identities=26% Similarity=0.569 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhc-cc-cHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 029844 27 TYGATVRQLLTD-LE-EVEEVNKQLDQMGYNIGIRLIDEFLAK 67 (186)
Q Consensus 27 l~~e~V~q~~~~-~~-~~~ev~~~Le~mGy~IG~RLiE~~~~r 67 (186)
||-+-| +++.. .. +.+-+.++| ++||+=..||+|.+-..
T Consensus 11 Ly~~A~-~~V~~~~~aS~S~lQR~l-rIGYnRAArlid~lE~~ 51 (73)
T 2ve8_A 11 LYDEAV-RFVTESRRASISAVQRKL-KIGYNRAARMIEAMEMA 51 (73)
T ss_dssp THHHHH-HHHHHHCCCCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHhcCCccHHHHHHHH-ccChHHHHHHHHHHHHC
Confidence 566666 45433 33 777665555 78999999999998754
No 13
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=41.62 E-value=21 Score=25.30 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=41.9
Q ss_pred HHHHhhhhhhcCcc-ccccccCCCCCeEEEeecCCcccccccCCCccCCCcchhhhhHHHHHHhhcCCce
Q 029844 82 VIAKVGFKMFLGVT-ATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMK 150 (186)
Q Consensus 82 fI~k~~Wk~lfgk~-ad~l~~t~~~~~y~L~~d~npl~~fv~lp~~~~~l~y~~~~cGiIrGaL~~lg~~ 150 (186)
|+.| +|.++=.-. .+...|+.++..|+|. |..-+.+- -+|.-...-+|++|+- =|.+-||+
T Consensus 7 F~~K-L~~mv~d~~~~~iI~W~~~G~sFvI~-d~~~F~~~-vLp~yFkh~n~~SFvR-----QLN~YGF~ 68 (106)
T 1hks_A 7 FLAK-LWRLVDDADTNRLICWTKDGQSFVIQ-NQAQFAKE-LLPLNYKHNNMASFIR-----QLNMYGFH 68 (106)
T ss_dssp THHH-HHHHHSSSTTTTTSEESTTTSCEECS-CCSTTTTT-TSTTTTSCCCHHHHHH-----HHHHHCCC
T ss_pred HHHH-HHHHhcCCCCCCEEEEeCCCCEEEEC-CHHHHHHH-HhHHhcCCCcHHHHHH-----hhhcCCCe
Confidence 6655 788876643 4567899999999965 55444432 3676666778888864 37888884
No 14
>1ty4_C Egg laying defective EGL-1, programmed cell death activator; apoptosis, CED-9, BCL-2 family proteins, recognition; 2.20A {Caenorhabditis elegans}
Probab=31.10 E-value=13 Score=23.67 Aligned_cols=14 Identities=36% Similarity=0.850 Sum_probs=11.4
Q ss_pred HHHhhhhHHHHHHH
Q 029844 49 LDQMGYNIGIRLID 62 (186)
Q Consensus 49 Le~mGy~IG~RLiE 62 (186)
...+||+||.+|.-
T Consensus 17 i~si~~~IG~KL~~ 30 (57)
T 1ty4_C 17 ISSIGYEIGSKLAA 30 (57)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77899999999874
No 15
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=25.74 E-value=17 Score=25.03 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHhhhhH
Q 029844 41 EVEEVNKQLDQMGYNI 56 (186)
Q Consensus 41 ~~~ev~~~Le~mGy~I 56 (186)
..--|-.+||.+||+|
T Consensus 51 pPr~VLnKLE~~G~rV 66 (83)
T 1jg5_A 51 PPRIVLDKLECRGFRV 66 (83)
T ss_dssp CHHHHHHHHHHTTCEE
T ss_pred ChHHHHHHHhccCeEE
Confidence 4556779999999986
No 16
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=23.71 E-value=1.1e+02 Score=19.79 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=33.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhcCCCCCCCHHHHHHHHH--Hhhhhh
Q 029844 45 VNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIA--KVGFKM 90 (186)
Q Consensus 45 v~~~Le~mGy~IG~RLiE~~~~r~~~~R~~~~ld~l~fI~--k~~Wk~ 90 (186)
+-..-++-|-+|-.-++|++.. .|.....++|.+|- +.+||-
T Consensus 12 vLDlYe~SnIrIP~DIIEdl~~----~~L~te~EVmnYiEnqR~~WKL 55 (67)
T 2bnk_A 12 VLDLYEQSNIRIPSDIIEDLVN----QRLQSEQEVLNYIETQRTYWKL 55 (67)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHT----TCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCcHHHHHHHHH----HhhhhHHHHHHHHHhhHhHHhh
Confidence 3445567789999999999983 57888899999995 778983
No 17
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=21.33 E-value=79 Score=22.79 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhh
Q 029844 17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGY 54 (186)
Q Consensus 17 ~~vs~~~f~~l~~e~V~q~~~~~~~~~ev~~~Le~mGy 54 (186)
+.++.+...-++.|.|.+..+.....++++.-++.+||
T Consensus 60 ~~~~~avl~~~q~eYi~a~~e~~AQq~~lstLid~LGy 97 (107)
T 2q0o_C 60 PSISGPVLQTLQDEYVARQKRSEAQQEELSDILDALGF 97 (107)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45888888888998887666655577788888888887
Done!