BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029845
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VQH2|DUOX_DROME Dual oxidase OS=Drosophila melanogaster GN=Duox PE=1 SV=2
Length = 1537
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 88 FSMKYIPWH--IVNRIMNLHAPEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFREST 145
F++ ++ WH + RI +H P+WS E +I A ++ + V +Y E
Sbjct: 288 FAILFLRWHNTLAQRIKRVH-PDWSDE--DIYQRARHTVIASLQNVIVY----EYLPAFL 340
Query: 146 GTALVDEQGYGDAVQKAEAMAFRRACARFG 175
GT+L +GY + F+ A RFG
Sbjct: 341 GTSLPPYEGYKQDIHPGIGHIFQAAAFRFG 370
>sp|Q07812|BAX_HUMAN Apoptosis regulator BAX OS=Homo sapiens GN=BAX PE=1 SV=1
Length = 192
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 11 RSITPTNSLSLLPKPHLLLQSFYSSKSSPAFSSSPETLNDENDAVPTSGISRPLSEILKE 70
R PT+S ++ LLLQ F ++ +PE D VP ++ LSE LK
Sbjct: 9 RGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPEL---ALDPVPQDASTKKLSECLKR 65
Query: 71 LNKNVPNSL 79
+ + +++
Sbjct: 66 IGDELDSNM 74
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 65 SEILKELNKNVPNSLIKIRV-EDGFSMKYIPWHIVNRIMNLHAPE-WSGEVRNITYSADG 122
S L+ N + L+ +++ E GF+ K + + R+ L E G +RN++Y
Sbjct: 67 SRFLESANHSASRVLVTLQLDESGFNSKSVLDELNVRVSGLLVREVLVGILRNLSYDNKA 126
Query: 123 KTVSVVYRVTIYGTDAEIFRESTGT 147
+ + YR ++ + E FR + +
Sbjct: 127 RCAKLAYRFFLWSGEQECFRHTVNS 151
>sp|Q4ULS4|SYFB_RICFE Phenylalanine--tRNA ligase beta subunit OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=pheT PE=3 SV=1
Length = 818
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 53 DAVPTSGISRPLSE----ILKELN----KNVPNSLIKIRVEDGFSMKYIPWHIVNRIMNL 104
DA+ GI+R L+ ILKEL K+ S +K+ V+D + + + + N
Sbjct: 168 DALGVYGIARDLAAKGIGILKELEIPEIKSTFTSKMKLNVQDKEACPLFTFREIRNLKNK 227
Query: 105 HAPEWSGEVRNITYSADGKTVSVVYRVTIY 134
+P+W +R + + KT+S + VT Y
Sbjct: 228 PSPDW---LRKLLKNVGVKTISSLVDVTNY 254
>sp|Q97BC2|RFCL_THEVO Replication factor C large subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rfcL PE=3 SV=1
Length = 420
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 27 LLLQSFYSSKSSPAFSSSPETLNDENDAVPTSGISRPLSEILKELNKNVPNSLIKIRVED 86
+ + FY + + S E +N+ ++++ +R L E KNV N + I ++
Sbjct: 145 ITMNDFYEFRKK---NYSSEVINN-SESIEFKPYARRLDRNYNEFKKNVRNRIKWIINQE 200
Query: 87 GFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSADGKTVS 126
GFS+ P I+N I++ +AP ++R+I + VS
Sbjct: 201 GFSL---PDDIINSIIDKNAP----DIRSIINDVEAAAVS 233
>sp|Q92I38|SYFB_RICCN Phenylalanine--tRNA ligase beta subunit OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=pheT PE=3 SV=1
Length = 818
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 53 DAVPTSGISRPLSE----ILKELNKNVPNSL----IKIRVEDGFSMKYIPWHIVNRIMNL 104
DA+ GI+R L+ ILKEL +V S +K+ V+D + + + + N
Sbjct: 168 DALGVYGIARDLAAKGIGILKELEISVIKSTFISKMKLNVQDKEACPLFTFREIRNLKNK 227
Query: 105 HAPEWSGEVRNITYSADGKTVSVVYRVTIY 134
+P+W +R + + KT+S + VT Y
Sbjct: 228 PSPDW---LRKLLKNVGVKTISSLVDVTNY 254
>sp|B1HVD6|HEM3_LYSSC Porphobilinogen deaminase OS=Lysinibacillus sphaericus (strain
C3-41) GN=hemC PE=3 SV=1
Length = 310
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 110 SGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEA 164
+GE +T SVVY+ T+ G+DA+ E T L +QG D +Q+ +A
Sbjct: 252 NGEEITLTGLVAAPDASVVYKETVVGSDAQKIGEELATILT-KQGAFDLIQRVKA 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,193,168
Number of Sequences: 539616
Number of extensions: 2842721
Number of successful extensions: 8515
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 8513
Number of HSP's gapped (non-prelim): 19
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)