Query 029845
Match_columns 186
No_of_seqs 52 out of 54
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 06:50:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2i_A RAD52, DNA repair prote 99.4 2.8E-13 9.6E-18 114.3 7.3 120 64-184 36-170 (209)
2 4exr_A Putative lipoprotein; Y 54.6 28 0.00096 27.5 6.0 100 46-170 16-127 (174)
3 3p1x_A Interleukin enhancer-bi 53.8 49 0.0017 22.4 6.8 56 106-177 17-72 (75)
4 2ljh_A Double-stranded RNA-spe 32.6 1.5E+02 0.0053 22.0 7.0 58 102-175 43-100 (114)
5 1rwu_A Hypothetical UPF0250 pr 28.9 36 0.0012 25.4 2.7 36 98-136 53-89 (109)
6 2zmu_A Fluorescent protein; GF 28.9 53 0.0018 27.8 4.0 41 104-147 81-123 (223)
7 2b7v_A Double-stranded RNA-spe 27.2 1.1E+02 0.0039 20.0 4.8 57 102-174 10-66 (71)
8 1bco_A MUA domain II, bacterio 26.2 56 0.0019 26.9 3.6 77 98-183 6-89 (327)
9 2yq2_A BVDV1 E2; viral protein 22.9 45 0.0016 30.0 2.6 21 103-123 127-148 (337)
10 3kz5_E Protein SOPB; partition 22.5 12 0.0004 25.6 -1.0 23 53-76 30-52 (52)
11 1n9l_A PHOT-LOV1, putative blu 22.4 1.4E+02 0.0048 19.1 4.4 32 108-141 66-98 (109)
12 3n54_B Spore germination prote 22.4 1.3E+02 0.0044 25.0 5.2 9 174-182 304-312 (350)
13 3mes_A Choline kinase; malaria 21.7 2.2E+02 0.0076 24.9 6.8 82 92-182 48-141 (424)
14 1wub_A Conserved hypothetical 21.6 72 0.0025 24.6 3.3 36 107-143 78-113 (178)
15 2fgs_A Putative periplasmic pr 21.6 82 0.0028 24.4 3.6 35 107-142 79-113 (179)
16 2vof_B BCL-2-binding component 20.6 31 0.0011 20.6 0.7 15 64-78 12-26 (26)
17 4aow_A Guanine nucleotide-bind 20.1 1.1E+02 0.0038 22.8 3.9 32 110-147 306-339 (340)
No 1
>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} SCOP: d.50.1.3 PDB: 1kn0_A
Probab=99.41 E-value=2.8e-13 Score=114.26 Aligned_cols=120 Identities=24% Similarity=0.377 Sum_probs=93.0
Q ss_pred HHHHHHHHcCCCCCCcccccccC-CcccccchhHHHHhhhh-hcCC-ccccceeeEE--Eee--CCC-EEEEEEEEEEEe
Q 029845 64 LSEILKELNKNVPNSLIKIRVED-GFSMKYIPWHIVNRIMN-LHAP-EWSGEVRNIT--YSA--DGK-TVSVVYRVTIYG 135 (186)
Q Consensus 64 LsEIL~~L~kPfP~~~Ik~R~~~-g~~l~yIpW~~vnR~L~-~~aP-gW~~EVr~V~--ys~--~G~-~VtV~~RLTI~G 135 (186)
.+.|.+.|+++++++.|++|+.. +.++.||+...+..+.| +++. ||+-+|.++. |.+ +|+ +|.+.+.|.|.-
T Consensus 36 ~~~iq~~L~~~lgpe~is~R~g~gg~kv~YIeg~kvI~lANeiFGFNGWSs~I~~~~vd~~d~~~gk~~v~~~aiVRVtL 115 (209)
T 1h2i_A 36 YQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQL 115 (209)
T ss_dssp HHHHHHHHHCCBCTTTEEEEECTTSCEEEEECHHHHHHHHHHHHCTTTEEEEEEEEEEEEEEESSSSEEEEEEEEEEEEE
T ss_pred HHHHHHHHhcccCchhheeccCCCCceEEEeeHHHHHHHHHhccCCCCCeeEEEEeeceeEeccCCeEEEEEEEEEEEEE
Confidence 68899999999999999999964 78899999988777776 7777 7999997653 322 333 344555566666
Q ss_pred cCceeEeecccccccC-CCC----CCchHHHHHHHHHHHHHHHhc--cceeccCCC
Q 029845 136 TDAEIFRESTGTALVD-EQG----YGDAVQKAEAMAFRRACARFG--LGLHLYHED 184 (186)
Q Consensus 136 ~DgeitREatGta~~~-d~~----~gDpv~aAes~AFrRACArFG--LGlYLY~ed 184 (186)
.||+ +||++|..... ... +..+-+.|+.+|||||+-.|| ||.+||+.+
T Consensus 116 kDGt-~~EdiG~G~~~n~~~kg~A~ekAKKeAvTDAlKRaLr~FGn~lGn~lydk~ 170 (209)
T 1h2i_A 116 KDGS-YHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKD 170 (209)
T ss_dssp TTSC-EEEEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTGGGCHH
T ss_pred CCCC-EecceeeEEEecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChH
Confidence 7884 79999987433 122 335678899999999999999 999999854
No 2
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=54.61 E-value=28 Score=27.45 Aligned_cols=100 Identities=11% Similarity=0.213 Sum_probs=59.7
Q ss_pred cCcCCCCCCCCCCCCCccHHHHHHHHcCCCCC-CcccccccCCcccccchhHHHHhhhhhcCCccccceeeEEEeeCCCE
Q 029845 46 ETLNDENDAVPTSGISRPLSEILKELNKNVPN-SLIKIRVEDGFSMKYIPWHIVNRIMNLHAPEWSGEVRNITYSADGKT 124 (186)
Q Consensus 46 ~~~~~~~~~~p~s~itRPLsEIL~~L~kPfP~-~~Ik~R~~~g~~l~yIpW~~vnR~L~~~aPgW~~EVr~V~ys~~G~~ 124 (186)
..-+++.+.+..+.+.-++.++++...+.+|. .+++..-+ .---.|.|||..+ .+|
T Consensus 16 ~~~~~~~~~~~~~~~~is~e~A~~~a~~~~pga~I~~iele------------------~~~G~~vYEVe~~---~~g-- 72 (174)
T 4exr_A 16 LKDEKNNENLMEQDFKVPYTDAINIFKDKYKDADIVDLSLE------------------RDLNKFVYTVEGV---DDN-- 72 (174)
T ss_dssp ------CCCGGGCCCSSCHHHHHHHHHHHSTTCEEEEEEEE------------------EETTEEEEEEEEE---CSS--
T ss_pred hhccccchhhhhccCCCCHHHHHHHHHHHCCCCEEEEEEEE------------------EeCCEEEEEEEEE---ECC--
Confidence 33444455567777888899999999999998 45443211 0011366777665 356
Q ss_pred EEEEEEEEEEecCceeEeecccccccCCC-----------CCCchHHHHHHHHHHHH
Q 029845 125 VSVVYRVTIYGTDAEIFRESTGTALVDEQ-----------GYGDAVQKAEAMAFRRA 170 (186)
Q Consensus 125 VtV~~RLTI~G~DgeitREatGta~~~d~-----------~~gDpv~aAes~AFrRA 170 (186)
..|.+.|...+|++..........++. .---+.+.|...|++++
T Consensus 73 --~e~ev~IDA~tG~Vl~~~~e~~d~dd~~~~~~~~~~~~~~~is~~~A~~~Al~~~ 127 (174)
T 4exr_A 73 --NEYKMKIDANTKDVLEDKTEKLDSEDLNGVARKEKLDLNDIMTPQQAMEIALKEQ 127 (174)
T ss_dssp --EEEEEEEETTTCCEEEEEEEECCGGGTTTTGGGGCCCCTTCCCHHHHHHHHHHHS
T ss_pred --EEEEEEEECCCCcEeccccccccccccccccchhcccccCCcCHHHHHHHHHHhC
Confidence 689999999999998765432211111 11234666777776655
No 3
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=53.81 E-value=49 Score=22.41 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=33.8
Q ss_pred CCccccceeeEEEeeCCCEEEEEEEEEEEecCceeEeecccccccCCCCCCchHHHHHHHHHHHHHHHhccc
Q 029845 106 APEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFGLG 177 (186)
Q Consensus 106 aPgW~~EVr~V~ys~~G~~VtV~~RLTI~G~DgeitREatGta~~~d~~~gDpv~aAes~AFrRACArFGLG 177 (186)
+|.+.+++.+.. -|+-. -..+++|+|.| ..+ ++.|. --+.||..|=++|+.+++-+
T Consensus 17 ~~~p~Y~~~~~~-Gp~H~-~~F~~~v~v~g---~~~-~G~G~----------SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 17 RRGLKYELISET-GGSHD-KRFVMEVEVDG---QKF-QGAGS----------NKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp STTCCEEEEEEE-SCTTS-CEEEEEEEETT---EEE-EEEES----------SHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCEEEEEEee-CCCCC-ceEEEEEEECC---EEE-EEEEC----------CHHHHHHHHHHHHHHHHHcc
Confidence 466666665542 23333 34566777754 444 44332 37889999999998887644
No 4
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=32.56 E-value=1.5e+02 Score=22.02 Aligned_cols=58 Identities=16% Similarity=0.055 Sum_probs=31.9
Q ss_pred hhhcCCccccceeeEEEeeCCCEEEEEEEEEEEecCceeEeecccccccCCCCCCchHHHHHHHHHHHHHHHhc
Q 029845 102 MNLHAPEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARFG 175 (186)
Q Consensus 102 L~~~aPgW~~EVr~V~ys~~G~~VtV~~RLTI~G~DgeitREatGta~~~d~~~gDpv~aAes~AFrRACArFG 175 (186)
|+-+|....+++.... -|+-. -+.+++|+|.| ..+ ++.|. --+.||..|=++|+.+++
T Consensus 43 LQE~~q~p~Y~~v~~~-Gp~H~-k~F~v~V~v~g---~~~-~G~G~----------SKK~AEq~AA~~AL~~L~ 100 (114)
T 2ljh_A 43 LNELRHGLIYKLESQT-GPVHA-PLFTISVEVDG---QKY-LGQGR----------SKKVARIEAAATALRSFI 100 (114)
T ss_dssp HHHHCSCCEEEEEEEE-CCSSS-CEEEEEEEETT---EEE-EEEES----------SHHHHHHHHHHHHHHHHC
T ss_pred HHHHccCCeEEEEEee-CCCCC-CeEEEEEEECC---EEE-EeeeC----------CHHHHHHHHHHHHHHHHH
Confidence 3333444344443332 23333 34667777755 444 44332 367888888888887764
No 5
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=28.94 E-value=36 Score=25.42 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=27.1
Q ss_pred HHhhhhhcCCc-cccceeeEEEeeCCCEEEEEEEEEEEec
Q 029845 98 VNRIMNLHAPE-WSGEVRNITYSADGKTVSVVYRVTIYGT 136 (186)
Q Consensus 98 vnR~L~~~aPg-W~~EVr~V~ys~~G~~VtV~~RLTI~G~ 136 (186)
+..++.-++|+ -. + .+.-|..|++++|.+++++...
T Consensus 53 V~~vv~~~~p~d~~--~-~~r~Ss~GkY~Svtv~v~v~S~ 89 (109)
T 1rwu_A 53 VVEVVQRHAPGDYT--P-TVKPSSKGNYHSVSITINATHI 89 (109)
T ss_dssp HHHHHHHHSSSCCC--E-EEEESSCSSEEEEEEEECCSSH
T ss_pred HHHHHHHhCCCCCC--c-eecCCCCCeEEEEEEEEEECCH
Confidence 66777888884 33 2 5567889999999998887653
No 6
>2zmu_A Fluorescent protein; GFP-like protein, luminescent protein, structural genomics, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: CFY; 1.65A {Fungia concinna} PDB: 2zmw_A* 3mgf_A*
Probab=28.85 E-value=53 Score=27.83 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=28.0
Q ss_pred hcCC-ccccceeeEEEeeCCCEEEEEEEEEEEecCceeEe-ecccc
Q 029845 104 LHAP-EWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFR-ESTGT 147 (186)
Q Consensus 104 ~~aP-gW~~EVr~V~ys~~G~~VtV~~RLTI~G~DgeitR-EatGt 147 (186)
.-.| |.+|| |.+.|- ||...++..++|+.| |+-+++ .-.|+
T Consensus 81 ~s~peGyswe-Rt~~fE-DGGv~t~~~~isleg-~~~~~~~~~~G~ 123 (223)
T 2zmu_A 81 QAFPEGLSWE-RSLEFE-DGGSASVSAHISLRG-NTFYHKSKFTGV 123 (223)
T ss_dssp HTTTTCEEEE-EEEEET-TSCEEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred HhCCCCeeEE-EEEEEC-CCcEEEEEEEEEEEC-CEEEEEEEEEEE
Confidence 3456 56666 999996 555899999999987 343444 34444
No 7
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=27.17 E-value=1.1e+02 Score=19.97 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=29.1
Q ss_pred hhhcCCccccceeeEEEeeCCCEEEEEEEEEEEecCceeEeecccccccCCCCCCchHHHHHHHHHHHHHHHh
Q 029845 102 MNLHAPEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACARF 174 (186)
Q Consensus 102 L~~~aPgW~~EVr~V~ys~~G~~VtV~~RLTI~G~DgeitREatGta~~~d~~~gDpv~aAes~AFrRACArF 174 (186)
|+-+++.-.+++.... -|+.. -.-+++|+|.| ..+ ++.| ..-+.||.+|=+.|+.++
T Consensus 10 L~E~~~~p~Y~~~~~~-Gp~h~-~~F~~~v~v~~---~~~-~G~G----------~SKK~Aeq~AA~~al~~L 66 (71)
T 2b7v_A 10 LNELRPGLKYDFLSES-GESHA-KSFVMSVVVDG---QFF-EGSG----------RNKKLAKARAAQSALATV 66 (71)
T ss_dssp HHHHCCSCEEEEEECC-CCTTT-CCEEEEEECSS---CEE-EEEE----------SSHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEEEeE-CCCCC-ceEEEEEEECC---EEE-EEee----------CCHHHHHHHHHHHHHHHH
Confidence 4444555444443321 23333 34566777755 233 3322 236777777777777653
No 8
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=26.24 E-value=56 Score=26.92 Aligned_cols=77 Identities=12% Similarity=0.084 Sum_probs=38.7
Q ss_pred HHhhhhhcCCc--cccceeeEE---EeeCCCEEEEEEEEEEEecCceeEeecccccccCCCCCCchHHHHHHHHHHHHHH
Q 029845 98 VNRIMNLHAPE--WSGEVRNIT---YSADGKTVSVVYRVTIYGTDAEIFRESTGTALVDEQGYGDAVQKAEAMAFRRACA 172 (186)
Q Consensus 98 vnR~L~~~aPg--W~~EVr~V~---ys~~G~~VtV~~RLTI~G~DgeitREatGta~~~d~~~gDpv~aAes~AFrRACA 172 (186)
++|-....+|+ |+..+-.+. ..++|+. ..+-|++.-.+ .+|.-+|-.-.. . +-..+..+||++||.
T Consensus 6 ~~R~~~~~~p~~~w~~D~t~~d~~~~~~~g~~--~r~~l~~~iD~--~SR~ivg~~~~~-~----~~~~~v~~aL~~a~~ 76 (327)
T 1bco_A 6 QQRTVEHLDAMQWINGDGYLHNVFVRWFNGDV--IRPKTWFWQDV--KTRKILGWRCDV-S----ENIDSIRLSFMDVVT 76 (327)
T ss_dssp -----CCCCTTTEEEEEEEECSBCEECTTSCE--ECCEEEEEEET--TTCCEEEEEEES-S----CCHHHHHHHHHHHHH
T ss_pred eeccccccCCCcEEEecCCEEEEEEECCCCcc--ceeEEEEEEEC--CCCcEEEEEEEC-C----CCHHHHHHHHHHHHH
Confidence 46667777884 765322111 1134641 12223332221 466666654222 1 245677889999999
Q ss_pred Hhccce--eccCC
Q 029845 173 RFGLGL--HLYHE 183 (186)
Q Consensus 173 rFGLGl--YLY~e 183 (186)
++|+-. .||.|
T Consensus 77 ~~G~P~~~~i~sD 89 (327)
T 1bco_A 77 RYGIPEDFHITID 89 (327)
T ss_dssp HHCEESSCEEECC
T ss_pred hcCCCCCcEEEee
Confidence 999855 77665
No 9
>2yq2_A BVDV1 E2; viral protein, pestivirus, virus fusion; HET: NAG; 2.58A {Bovine viral diarrhea virus 1} PDB: 2yq3_A*
Probab=22.92 E-value=45 Score=29.95 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=17.5
Q ss_pred hhcCC-ccccceeeEEEeeCCC
Q 029845 103 NLHAP-EWSGEVRNITYSADGK 123 (186)
Q Consensus 103 ~~~aP-gW~~EVr~V~ys~~G~ 123 (186)
+++|| ||+|-|.-+..++|.=
T Consensus 127 qmVCP~GWTGtVeCtl~n~dTL 148 (337)
T 2yq2_A 127 QMVCPIGWTGTVSCMLANRDTL 148 (337)
T ss_dssp EECSCSSCCEEEEEEEECTTTC
T ss_pred EEECCCCCceeEEEEEecCCce
Confidence 57999 9999998888877664
No 10
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=22.50 E-value=12 Score=25.64 Aligned_cols=23 Identities=48% Similarity=0.742 Sum_probs=17.3
Q ss_pred CCCCCCCCCccHHHHHHHHcCCCC
Q 029845 53 DAVPTSGISRPLSEILKELNKNVP 76 (186)
Q Consensus 53 ~~~p~s~itRPLsEIL~~L~kPfP 76 (186)
-.+|.++|.+ +..||++|+++=|
T Consensus 30 ~~iP~~~IeK-IE~lL~e~~k~~~ 52 (52)
T 3kz5_E 30 SRVPTECIEK-IEAILKELEKPAP 52 (52)
T ss_dssp TTSCHHHHHH-HHHHHHHHC----
T ss_pred ccCCHHHHHH-HHHHHHHHhhcCC
Confidence 3589999999 9999999998743
No 11
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=22.40 E-value=1.4e+02 Score=19.10 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=21.7
Q ss_pred ccccceeeEEEeeCCCEEEEEEEEE-EEecCceeE
Q 029845 108 EWSGEVRNITYSADGKTVSVVYRVT-IYGTDAEIF 141 (186)
Q Consensus 108 gW~~EVr~V~ys~~G~~VtV~~RLT-I~G~Dgeit 141 (186)
.|.+|++. +..+|+.+.+..+++ |+..+|++.
T Consensus 66 ~~~~e~~~--~~kdG~~~~~~~~~~pi~d~~G~~~ 98 (109)
T 1n9l_A 66 ACSVRLLN--YRKDGTPFWNLLTVTPIKTPDGRVS 98 (109)
T ss_dssp CEEEEEEE--ECTTSCEEEEEEEEEEEECTTSCEE
T ss_pred cEEEEEEE--EcCCCCEEEEEEEEEEEECCCCCEE
Confidence 38887765 457898777776665 456667654
No 12
>3n54_B Spore germination protein B3; A novel fold, lipid binding protein; 2.30A {Bacillus subtilis subsp}
Probab=22.36 E-value=1.3e+02 Score=24.96 Aligned_cols=9 Identities=22% Similarity=0.006 Sum_probs=7.6
Q ss_pred hccceeccC
Q 029845 174 FGLGLHLYH 182 (186)
Q Consensus 174 FGLGlYLY~ 182 (186)
||||.|+|.
T Consensus 304 ~gfG~~~~~ 312 (350)
T 3n54_B 304 VFLSDHIRI 312 (350)
T ss_dssp SCHHHHHHH
T ss_pred hhHHHHHHH
Confidence 799999875
No 13
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=21.75 E-value=2.2e+02 Score=24.88 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=45.8
Q ss_pred cchhHHHHhhhhhcCCcccc---ceeeEEEeeCCCEEEEEEEEEEEecC--------ceeEeec-ccccccCCCCCCchH
Q 029845 92 YIPWHIVNRIMNLHAPEWSG---EVRNITYSADGKTVSVVYRVTIYGTD--------AEIFRES-TGTALVDEQGYGDAV 159 (186)
Q Consensus 92 yIpW~~vnR~L~~~aPgW~~---EVr~V~ys~~G~~VtV~~RLTI~G~D--------geitREa-tGta~~~d~~~gDpv 159 (186)
-++-..+.+++..+.|+|.+ +...|.--.+|-+. .+|+|+..+.+ .=+.|-. .|++. .-|
T Consensus 48 ~~d~~~l~~l~~~~~p~w~~~~~~~~~v~~lsGG~TN-~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~-----~id-- 119 (424)
T 3mes_A 48 ITDTEIIIGICRKNIPGWKEINESYIEVKQIFSGLTN-QLFVVSIVNESMSLSLKHPRILFRIYGKHVGK-----FYD-- 119 (424)
T ss_dssp --CHHHHHHHHHHHSTTCTTCCGGGEEEEEECCCSSS-EEEEEEECCC-----CCCSEEEEEECCCCC-C-----CCC--
T ss_pred CCCHHHHHHHHHHHcCccccCCCCceEEEEcCCCccc-ceEEEEeCCCcccccCCCCeEEEEECCCCcch-----hcC--
Confidence 34556688999999999984 34444433466544 67888876422 2245532 22221 112
Q ss_pred HHHHHHHHHHHHHHhccceeccC
Q 029845 160 QKAEAMAFRRACARFGLGLHLYH 182 (186)
Q Consensus 160 ~aAes~AFrRACArFGLGlYLY~ 182 (186)
-..|..+++.+ +..|++=-+|.
T Consensus 120 R~~E~~~l~~L-~~~gi~P~l~~ 141 (424)
T 3mes_A 120 SKVELDVFRYL-SNINIAPNIIA 141 (424)
T ss_dssp HHHHHHHHHHH-HHTTSSCCEEE
T ss_pred HHHHHHHHHHH-HhcCCCCCEEE
Confidence 24566666544 55788765553
No 14
>1wub_A Conserved hypothetical protein TT1927B; beta-barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: OTP; 1.65A {Thermus thermophilus} SCOP: b.61.6.1
Probab=21.60 E-value=72 Score=24.57 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=23.9
Q ss_pred CccccceeeEEEeeCCCEEEEEEEEEEEecCceeEee
Q 029845 107 PEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFRE 143 (186)
Q Consensus 107 PgW~~EVr~V~ys~~G~~VtV~~RLTI~G~DgeitRE 143 (186)
|.-+++...|.-. +++...|.+.|||+|....++-+
T Consensus 78 P~~tF~st~v~~~-g~~~~~v~G~LTi~GvTkpv~l~ 113 (178)
T 1wub_A 78 PEIRFVSTQIEPL-GGNRYRIQGNLTIRDITKPVTLE 113 (178)
T ss_dssp CEEEEEEEEEEEE-ETTEEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEEEEEEEC-CCCcEEEEEEEEECcEeEEEEEE
Confidence 5555655555433 33568999999999966655443
No 15
>2fgs_A Putative periplasmic protein; lipid binding protein, structural genomics, protein structure initiative, PSI, nysgxrc; 2.90A {Campylobacter jejuni}
Probab=21.60 E-value=82 Score=24.43 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=22.7
Q ss_pred CccccceeeEEEeeCCCEEEEEEEEEEEecCceeEe
Q 029845 107 PEWSGEVRNITYSADGKTVSVVYRVTIYGTDAEIFR 142 (186)
Q Consensus 107 PgW~~EVr~V~ys~~G~~VtV~~RLTI~G~DgeitR 142 (186)
|.-+++...|.-. ++....|.+.|||+|....++-
T Consensus 79 P~atF~st~v~~~-g~~~~~v~G~LTi~GvTkpVtl 113 (179)
T 2fgs_A 79 PDMTFTMKKYEKI-DNEKGKMTGTLTIAGVSKDIVL 113 (179)
T ss_dssp CEEEEEEEEEEES-SSSEEEEEEEEEETTEEEEEEE
T ss_pred CEEEEEEEEEEEC-CCceEEEEEEEEECcEeEEEEE
Confidence 4445555555432 3346899999999997666644
No 16
>2vof_B BCL-2-binding component 3; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2roc_B
Probab=20.56 E-value=31 Score=20.60 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=11.0
Q ss_pred HHHHHHHHcCCCCCC
Q 029845 64 LSEILKELNKNVPNS 78 (186)
Q Consensus 64 LsEIL~~L~kPfP~~ 78 (186)
|.-+..|||++||.+
T Consensus 12 L~~~a~DLnA~y~qR 26 (26)
T 2vof_B 12 LRRIADDLNAQYERR 26 (26)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHhchhhcccccCC
Confidence 667888999999863
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=20.12 E-value=1.1e+02 Score=22.75 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=20.5
Q ss_pred ccceeeEEEeeCCCEEEEEEEEEEEecCcee--Eeecccc
Q 029845 110 SGEVRNITYSADGKTVSVVYRVTIYGTDAEI--FRESTGT 147 (186)
Q Consensus 110 ~~EVr~V~ys~~G~~VtV~~RLTI~G~Dgei--tREatGt 147 (186)
...|..+.|+|+|+.+ ++ -|.||.+ ++=.+|+
T Consensus 306 ~~~v~~l~~s~dg~~l-~s-----gs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 306 PPQCTSLAWSADGQTL-FA-----GYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCEEEEEECTTSSEE-EE-----EETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCCCCEE-EE-----EeCCCEEEEEeCCCcC
Confidence 3568889999999854 22 3577865 5556665
Done!