Query 029846
Match_columns 186
No_of_seqs 164 out of 323
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 06:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nee_A EIF-2-beta, probable tr 99.8 4.4E-21 1.5E-25 152.8 -1.9 60 115-179 4-63 (138)
2 2d74_B Translation initiation 99.8 3.7E-20 1.3E-24 149.1 1.9 60 115-179 5-65 (148)
3 3cw2_K Translation initiation 99.7 2.1E-20 7.2E-25 149.0 -3.6 60 115-179 4-63 (139)
4 2e9h_A EIF-5, eukaryotic trans 99.4 1.2E-13 4.3E-18 112.1 1.7 50 126-179 10-62 (157)
5 1k8b_A EIF-2-beta, probable tr 99.2 1E-11 3.6E-16 84.3 3.5 30 149-179 1-30 (52)
6 2g2k_A EIF-5, eukaryotic trans 99.1 2.3E-11 7.9E-16 99.9 3.5 40 140-179 13-55 (170)
7 2lr8_A CAsp8-associated protei 24.7 23 0.00079 25.1 0.0 18 161-178 37-54 (70)
8 4eto_A Protein S100-A4; calciu 18.3 41 0.0014 23.1 1.1 21 161-184 70-90 (93)
9 2eki_A DRG 1, developmentally- 17.3 73 0.0025 23.3 2.3 25 144-174 24-49 (93)
10 3n22_A Protein S100-A2; EF-han 15.0 54 0.0018 22.8 1.1 21 161-184 71-91 (98)
No 1
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=99.78 E-value=4.4e-21 Score=152.76 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=54.9
Q ss_pred CchHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARS 179 (186)
Q Consensus 115 ~y~YeeLL~R~f~~L~e~NPela~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~~ 179 (186)
+|+|++||+|||++| |+..++..||.||+|||.++|+| |+|.||.+||++|||+|+||-.
T Consensus 4 ~~~Y~~lL~R~~~~l----~~~~~~~~R~~mp~~~v~~eG~k-Tvi~Nf~dIa~~L~R~p~hv~k 63 (138)
T 1nee_A 4 MDDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQGNR-TFIQNFREVADALNRDPQHLLK 63 (138)
T ss_dssp CCSSCCCCCSSSSSS----CTTSCCCCCCCCSCCCCCEETTE-EEESCHHHHHHHHCSSHHHHHH
T ss_pred ccCHHHHHHHHHHHc----ccccCCccceecCCCeEEEECCc-EEEEcHHHHHHHHCCCHHHHHH
Confidence 689999999999999 66556678999999999999986 9999999999999999999853
No 2
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=99.77 E-value=3.7e-20 Score=149.08 Aligned_cols=60 Identities=28% Similarity=0.417 Sum_probs=55.5
Q ss_pred CchHHHHHHHHHHHHHhcCCCCc-ccccceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846 115 DYEYEELLGRVFNILRENNPELA-GDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARS 179 (186)
Q Consensus 115 ~y~YeeLL~R~f~~L~e~NPela-~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~~ 179 (186)
.|+|++||+|||++| |+.+ ++..||.||+|||.++|+ ||+|.||.+||++|||+|+||-.
T Consensus 5 ~~~Y~~LL~R~~~~l----p~~~~~~~~RykmP~~~v~~eGk-KTvi~Nf~dIa~~L~R~p~hv~k 65 (148)
T 2d74_B 5 YYDYEKLLEKAYQEL----PENVKHHKSRFEVPGALVTIEGN-KTIIENFKDIADALNRDPQHLLK 65 (148)
T ss_dssp TTCHHHHHHTTTSSS----CHHHHSSSCCCCCCCCCEEEETT-EEEESCHHHHHHHHTCCSHHHHH
T ss_pred cccHHHHHHHHHHHC----ccccCCCCCceecCCCeEEEecC-eEEEEcHHHHHHHHCCCHHHHHH
Confidence 588999999999999 9987 777899999999999995 69999999999999999999853
No 3
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=99.75 E-value=2.1e-20 Score=149.02 Aligned_cols=60 Identities=23% Similarity=0.409 Sum_probs=54.5
Q ss_pred CchHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARS 179 (186)
Q Consensus 115 ~y~YeeLL~R~f~~L~e~NPela~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~~ 179 (186)
+|+|++||+|||++| |+..+...||.||+|||.++|+| |+|.||.+||++|||+|+||-.
T Consensus 4 ~~~Y~~lL~R~~~~l----~~~~~~~~R~kmp~~~v~~eG~k-Tvi~Nf~dIa~~L~R~p~hv~k 63 (139)
T 3cw2_K 4 EKEYVEMLDRLYSKL----PEKGRKEGTQSLPNMIILNIGNT-TIIRNFAEYCDRIRREDKICMK 63 (139)
T ss_dssp SGGGHHHHTTTTTSS----TTSSSCSSCCSCCCCCCCCCSSS-CCCSCSSSTTTTTSSCCTTTHH
T ss_pred ccCHHHHHHHHHHHc----ccccCCccceecCCCeEEEECCe-EEEEcHHHHHHHHCCCHHHHHH
Confidence 689999999999999 55446678999999999999986 9999999999999999999853
No 4
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-13 Score=112.07 Aligned_cols=50 Identities=26% Similarity=0.252 Sum_probs=44.7
Q ss_pred HHHHHhcCCCCcccccceecCCCeEEEeCC---ceeEeechHHHHHHhCCCHHHHhh
Q 029846 126 FNILRENNPELAGDRRRTVMRPPQVLREGT---KKTVFVNFMDLCKTYVLHASAARS 179 (186)
Q Consensus 126 f~~L~e~NPela~~~~Rf~ippPqV~reGt---KKTif~NF~eIck~L~Rdp~hv~~ 179 (186)
|+|+|++||.+. ||.||+|||.++|+ +||+|.||.+||++|||+|+||-.
T Consensus 10 ~nI~r~~~d~~~----RykmP~~~v~~eG~gnG~KTvi~Nf~dIak~L~R~p~hv~k 62 (157)
T 2e9h_A 10 VNVNRSVSDQFY----RYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTK 62 (157)
T ss_dssp EESSTTCCCSCC----CCEEECCCEEECSSSSSCEEEETTHHHHHHHTTSCTHHHHH
T ss_pred EeccCCCCCccc----ceecCCCeEEEeccCCccEEEEEcHHHHHHHHCCCHHHHHH
Confidence 567777887775 89999999999998 679999999999999999999854
No 5
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=99.18 E-value=1e-11 Score=84.32 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=27.9
Q ss_pred eEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846 149 QVLREGTKKTVFVNFMDLCKTYVLHASAARS 179 (186)
Q Consensus 149 qV~reGtKKTif~NF~eIck~L~Rdp~hv~~ 179 (186)
+|+|+|+| |+|.||.+||++|||+|+||-.
T Consensus 1 ~v~~eG~k-Tvi~Nf~~Ia~~L~R~p~hv~k 30 (52)
T 1k8b_A 1 EILIEGNR-TIIRNFRELAKAVNRDEEFFAK 30 (52)
T ss_dssp CEEEETTE-EEECCHHHHHHHHHTCHHHHHH
T ss_pred CcEEEcCe-EEEECHHHHHHHHCCCHHHHHH
Confidence 68999987 9999999999999999999854
No 6
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=99.12 E-value=2.3e-11 Score=99.88 Aligned_cols=40 Identities=28% Similarity=0.204 Sum_probs=36.6
Q ss_pred ccceecCCCeEEEeCC---ceeEeechHHHHHHhCCCHHHHhh
Q 029846 140 RRRTVMRPPQVLREGT---KKTVFVNFMDLCKTYVLHASAARS 179 (186)
Q Consensus 140 ~~Rf~ippPqV~reGt---KKTif~NF~eIck~L~Rdp~hv~~ 179 (186)
-.||.||+|||.++|+ +||+|.||.+||++|||+|+||-.
T Consensus 13 ~~RykmP~~~v~~EG~gnG~KTvi~Nf~dIak~L~R~p~hv~k 55 (170)
T 2g2k_A 13 FYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTK 55 (170)
T ss_dssp CSSCCCCCCCCEEESCTTTCEEECSSHHHHHHHHSSCCTTTHH
T ss_pred cccccCCCCeEEEeccCCccEEEEEcHHHHHHHhCCCHHHHHH
Confidence 3599999999999998 579999999999999999999853
No 7
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=24.68 E-value=23 Score=25.08 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=15.6
Q ss_pred echHHHHHHhCCCHHHHh
Q 029846 161 VNFMDLCKTYVLHASAAR 178 (186)
Q Consensus 161 ~NF~eIck~L~Rdp~hv~ 178 (186)
.-|..|+..|||.|+-|+
T Consensus 37 ~tfa~iA~~Lnks~~QV~ 54 (70)
T 2lr8_A 37 KTFAYLAAKLDKNPNQVS 54 (70)
Confidence 458899999999999876
No 8
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=18.29 E-value=41 Score=23.11 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=17.6
Q ss_pred echHHHHHHhCCCHHHHhhhhhhh
Q 029846 161 VNFMDLCKTYVLHASAARSCHDIF 184 (186)
Q Consensus 161 ~NF~eIck~L~Rdp~hv~~~~~~~ 184 (186)
.+|.+.+..|.+ ....||+.|
T Consensus 70 Idf~EF~~~~~~---~~~~~~~~~ 90 (93)
T 4eto_A 70 VDFQEYCVFLSC---IAMMCNEFF 90 (93)
T ss_dssp BCHHHHHHHHHH---HHHHHHHHH
T ss_pred CcHHHHHHHHHH---HHHHHHHHH
Confidence 589999998885 778999986
No 9
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=17.28 E-value=73 Score=23.33 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.0
Q ss_pred ecCCCeEE-EeCCceeEeechHHHHHHhCCCH
Q 029846 144 VMRPPQVL-REGTKKTVFVNFMDLCKTYVLHA 174 (186)
Q Consensus 144 ~ippPqV~-reGtKKTif~NF~eIck~L~Rdp 174 (186)
.++.|-|+ +.|+. -.++|..+||+-
T Consensus 24 d~~dpviL~~~GsT------v~Dfa~~IH~di 49 (93)
T 2eki_A 24 DYTSPVVLPYSRTT------VEDFCMKIHKNL 49 (93)
T ss_dssp CSSSCEEEETTSCC------HHHHHHHHCTTC
T ss_pred CCCCCEEEecCCCC------HHHHHHHHHHHH
Confidence 46789999 88876 789999999974
No 10
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=15.00 E-value=54 Score=22.84 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=17.0
Q ss_pred echHHHHHHhCCCHHHHhhhhhhh
Q 029846 161 VNFMDLCKTYVLHASAARSCHDIF 184 (186)
Q Consensus 161 ~NF~eIck~L~Rdp~hv~~~~~~~ 184 (186)
.+|.+.+..|.| ....||+.|
T Consensus 71 Idf~EF~~~~~~---~~~~~~~~~ 91 (98)
T 3n22_A 71 VDFQEYAVFLAL---ITVMSNDFF 91 (98)
T ss_dssp BCHHHHHHHHHH---HHHHHHHC-
T ss_pred CcHHHHHHHHHH---HHHHHHHHH
Confidence 589999999875 778999976
Done!