Query 029846
Match_columns 186
No_of_seqs 164 out of 323
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 06:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029846.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029846hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1neea1 d.241.1.1 (A:1-98) Tra 99.8 6.7E-21 4.9E-25 141.9 -2.0 59 116-179 2-60 (98)
2 d1k8ba_ d.241.1.1 (A:) Transla 99.2 7.5E-12 5.5E-16 83.3 3.5 30 149-179 1-30 (52)
3 d3brda2 b.2.5.8 (A:197-380) DN 25.8 15 0.0011 28.3 2.1 18 138-155 34-51 (184)
4 d1r71a_ a.4.14.1 (A:) Transcri 25.0 25 0.0018 23.5 3.0 24 163-186 33-56 (114)
5 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 22.9 25 0.0019 21.3 2.4 20 162-181 23-43 (65)
6 d1t1va_ c.47.1.14 (A:) SH3BGRL 15.9 51 0.0037 21.1 2.9 22 146-170 60-81 (93)
7 d1n1fa_ a.26.1.3 (A:) Interleu 15.3 21 0.0015 26.3 0.7 26 161-186 81-106 (156)
8 d1h75a_ c.47.1.1 (A:) Glutared 14.1 49 0.0036 20.2 2.3 25 147-174 51-76 (76)
9 d1ksoa_ a.39.1.2 (A:) Calcycli 14.0 32 0.0023 22.7 1.4 21 161-184 69-89 (93)
10 d1lqsl_ a.26.1.3 (L:) Interleu 13.9 25 0.0018 25.6 0.8 12 174-186 89-100 (142)
No 1
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=99.76 E-value=6.7e-21 Score=141.85 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846 116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLHASAARS 179 (186)
Q Consensus 116 y~YeeLL~R~f~~L~e~NPela~~~~Rf~ippPqV~reGtKKTif~NF~eIck~L~Rdp~hv~~ 179 (186)
++|++||+|||+.| |+...+..||.||+|+|.++| +||+|.||.+||+.|||+|+||..
T Consensus 2 ~~Y~~LL~R~~~~l----~~~~~~~~R~~mP~~~v~~eG-kkTii~Nf~~Ia~~L~R~p~hl~k 60 (98)
T d1neea1 2 DDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQG-NRTFIQNFREVADALNRDPQHLLK 60 (98)
T ss_dssp CSSCCCCCSSSSSS----CTTSCCCCCCCCSCCCCCEET-TEEEESCHHHHHHHHCSSHHHHHH
T ss_pred ccHHHHHHHHHHHC----CcccCCCcceecCCceEEEec-ceEEEechHHHHHHHCCCHHHHHH
Confidence 47999999999999 777667779999999999999 569999999999999999999964
No 2
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.16 E-value=7.5e-12 Score=83.34 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=27.6
Q ss_pred eEEEeCCceeEeechHHHHHHhCCCHHHHhh
Q 029846 149 QVLREGTKKTVFVNFMDLCKTYVLHASAARS 179 (186)
Q Consensus 149 qV~reGtKKTif~NF~eIck~L~Rdp~hv~~ 179 (186)
+|+++| +||+|.||.+||++|||+|+||-.
T Consensus 1 ~v~~EG-kkTvi~Nf~eI~~~L~R~p~hv~k 30 (52)
T d1k8ba_ 1 EILIEG-NRTIIRNFRELAKAVNRDEEFFAK 30 (52)
T ss_dssp CEEEET-TEEEECCHHHHHHHHHTCHHHHHH
T ss_pred CceEec-ceEeeecHHHHHHHhCCCHHHHHH
Confidence 689999 569999999999999999999964
No 3
>d3brda2 b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=25.80 E-value=15 Score=28.26 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=16.1
Q ss_pred ccccceecCCCeEEEeCC
Q 029846 138 GDRRRTVMRPPQVLREGT 155 (186)
Q Consensus 138 ~~~~Rf~ippPqV~reGt 155 (186)
|..+||--|||.|...|+
T Consensus 34 G~EKRFfCPPP~vyL~G~ 51 (184)
T d3brda2 34 GNEKRFFCPPPCIYLIGQ 51 (184)
T ss_dssp TTCCCCCSSCCEEEEEST
T ss_pred cccccccCCCCEEEEecC
Confidence 567899999999999995
No 4
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=25.03 E-value=25 Score=23.55 Aligned_cols=24 Identities=8% Similarity=-0.053 Sum_probs=20.7
Q ss_pred hHHHHHHhCCCHHHHhhhhhhhcC
Q 029846 163 FMDLCKTYVLHASAARSCHDIFAC 186 (186)
Q Consensus 163 F~eIck~L~Rdp~hv~~~~~~~~~ 186 (186)
..+||+++++.+.+|+.+.-++.|
T Consensus 33 ~~eiA~~~G~s~~~V~~~l~L~~l 56 (114)
T d1r71a_ 33 KGDIAKEIGKSPAFITQHVTLLDL 56 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHHGGGSC
T ss_pred HHHHHHHHCCcHHHHHHHHHHhCC
Confidence 379999999999999998877654
No 5
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.89 E-value=25 Score=21.31 Aligned_cols=20 Identities=10% Similarity=0.100 Sum_probs=17.0
Q ss_pred chHHHHHHh-CCCHHHHhhhh
Q 029846 162 NFMDLCKTY-VLHASAARSCH 181 (186)
Q Consensus 162 NF~eIck~L-~Rdp~hv~~~~ 181 (186)
||..||..| +|.+..|++..
T Consensus 23 ~W~~Ia~~~~~Rt~~q~k~ry 43 (65)
T d2cu7a1 23 RWTKISKLIGSRTVLQVKSYA 43 (65)
T ss_dssp CHHHHHHHHSSSCHHHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHH
Confidence 699999999 79999888743
No 6
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.93 E-value=51 Score=21.08 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=18.9
Q ss_pred CCCeEEEeCCceeEeechHHHHHHh
Q 029846 146 RPPQVLREGTKKTVFVNFMDLCKTY 170 (186)
Q Consensus 146 ppPqV~reGtKKTif~NF~eIck~L 170 (186)
.+|||+..| ..|-+|.+++...
T Consensus 60 t~Pqifv~~---~~iGg~del~~~~ 81 (93)
T d1t1va_ 60 TPPQIVNGN---HYCGDYELFVEAV 81 (93)
T ss_dssp CSCEEEETT---EEEEEHHHHHHHH
T ss_pred eeEEEEECC---EEEecHHHHHHHH
Confidence 369999999 8999999998754
No 7
>d1n1fa_ a.26.1.3 (A:) Interleukin-19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.26 E-value=21 Score=26.28 Aligned_cols=26 Identities=12% Similarity=0.461 Sum_probs=17.2
Q ss_pred echHHHHHHhCCCHHHHhhhhhhhcC
Q 029846 161 VNFMDLCKTYVLHASAARSCHDIFAC 186 (186)
Q Consensus 161 ~NF~eIck~L~Rdp~hv~~~~~~~~~ 186 (186)
..+..|+..+..=-.+++.||.++.|
T Consensus 81 ~~v~sLan~f~~L~~~L~~C~~~~~C 106 (156)
T d1n1fa_ 81 RKISSIANSFLYMQKTLRQCQEQRQC 106 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---CC
T ss_pred hHHHHHHHHHHHHHHHHHhChhhcCC
Confidence 34566777777777788999999988
No 8
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=14.08 E-value=49 Score=20.17 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=17.9
Q ss_pred CCeEEEeCCceeEeech-HHHHHHhCCCH
Q 029846 147 PPQVLREGTKKTVFVNF-MDLCKTYVLHA 174 (186)
Q Consensus 147 pPqV~reGtKKTif~NF-~eIck~L~Rdp 174 (186)
-|+|+..| .+|..| .+.-+.|+..|
T Consensus 51 vP~i~i~~---~~i~Gf~~d~i~~L~~a~ 76 (76)
T d1h75a_ 51 LPVVIAGD---LSWSGFRPDMINRLHPAP 76 (76)
T ss_dssp SCEEEETT---EEEESCCHHHHGGGSCCC
T ss_pred CCEEEECC---EEEECCCHHHHHHHhcCC
Confidence 58999888 788999 46556666544
No 9
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=14.04 E-value=32 Score=22.65 Aligned_cols=21 Identities=24% Similarity=0.657 Sum_probs=16.6
Q ss_pred echHHHHHHhCCCHHHHhhhhhhh
Q 029846 161 VNFMDLCKTYVLHASAARSCHDIF 184 (186)
Q Consensus 161 ~NF~eIck~L~Rdp~hv~~~~~~~ 184 (186)
.||.|.|..|.+ ....||.+|
T Consensus 69 IdF~EF~~l~~~---l~~~~h~~~ 89 (93)
T d1ksoa_ 69 VDFVEYVRSLAC---LCLYCHEYF 89 (93)
T ss_dssp ECHHHHHHHHHH---HHHHHCGGG
T ss_pred CcHHHHHHHHHH---HHHHHHHHH
Confidence 588888888876 557899887
No 10
>d1lqsl_ a.26.1.3 (L:) Interleukin-10 (cytokine synthesis inhibitory factor, CSIF) {Human herpesvirus 5 [TaxId: 10359]}
Probab=13.93 E-value=25 Score=25.55 Aligned_cols=12 Identities=25% Similarity=0.805 Sum_probs=8.3
Q ss_pred HHHHhhhhhhhcC
Q 029846 174 ASAARSCHDIFAC 186 (186)
Q Consensus 174 p~hv~~~~~~~~~ 186 (186)
-.+++.|| +++|
T Consensus 89 ~~~L~~C~-~~~c 100 (142)
T d1lqsl_ 89 YKDMRQCP-LLGC 100 (142)
T ss_dssp HHHHTTCG-GGSC
T ss_pred HHHHhcCC-CCCC
Confidence 45567788 7777
Done!