Query 029849
Match_columns 186
No_of_seqs 232 out of 1822
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 2E-26 4.3E-31 199.9 7.9 72 46-117 1-74 (371)
2 KOG0713 Molecular chaperone (D 99.9 6.4E-24 1.4E-28 180.7 7.1 75 44-118 11-87 (336)
3 KOG0712 Molecular chaperone (D 99.9 6.6E-22 1.4E-26 169.8 7.3 69 47-116 2-70 (337)
4 PRK14288 chaperone protein Dna 99.8 3.2E-21 7E-26 169.1 6.9 67 48-114 2-70 (369)
5 PRK14296 chaperone protein Dna 99.8 4.5E-21 9.8E-26 168.3 7.1 67 48-114 3-70 (372)
6 KOG0716 Molecular chaperone (D 99.8 2.7E-21 5.9E-26 160.3 4.1 69 47-115 29-99 (279)
7 PRK14279 chaperone protein Dna 99.8 2.2E-20 4.7E-25 165.0 7.1 66 48-113 8-75 (392)
8 PRK14286 chaperone protein Dna 99.8 2.4E-20 5.2E-25 163.7 6.9 67 48-114 3-71 (372)
9 PTZ00037 DnaJ_C chaperone prot 99.8 2.9E-20 6.2E-25 165.4 7.3 70 44-115 23-92 (421)
10 PRK14282 chaperone protein Dna 99.8 6.6E-20 1.4E-24 160.8 7.2 67 48-114 3-72 (369)
11 PRK14287 chaperone protein Dna 99.8 7.6E-20 1.6E-24 160.5 7.1 68 48-115 3-71 (371)
12 PRK14283 chaperone protein Dna 99.8 1.2E-19 2.7E-24 159.5 7.2 68 47-114 3-71 (378)
13 PRK14299 chaperone protein Dna 99.8 1.3E-19 2.8E-24 154.4 7.0 68 48-115 3-71 (291)
14 PRK14276 chaperone protein Dna 99.8 1.3E-19 2.7E-24 159.6 7.1 67 48-114 3-70 (380)
15 PRK14291 chaperone protein Dna 99.8 2.5E-19 5.4E-24 157.8 8.6 67 48-114 2-69 (382)
16 PRK14277 chaperone protein Dna 99.8 1.8E-19 3.8E-24 159.0 7.0 67 48-114 4-72 (386)
17 PRK14298 chaperone protein Dna 99.8 1.9E-19 4.1E-24 158.3 6.6 67 48-114 4-71 (377)
18 PRK14280 chaperone protein Dna 99.8 2.6E-19 5.7E-24 157.4 7.2 67 48-114 3-70 (376)
19 PRK14294 chaperone protein Dna 99.8 2.4E-19 5.2E-24 157.1 6.9 68 47-114 2-71 (366)
20 PRK14295 chaperone protein Dna 99.8 3.4E-19 7.4E-24 157.3 7.4 64 48-111 8-73 (389)
21 PRK14297 chaperone protein Dna 99.8 2.1E-19 4.6E-24 158.2 6.1 67 48-114 3-71 (380)
22 PRK14285 chaperone protein Dna 99.8 2.6E-19 5.7E-24 156.8 6.6 66 49-114 3-70 (365)
23 PRK14301 chaperone protein Dna 99.8 2.7E-19 5.8E-24 157.1 6.3 67 48-114 3-71 (373)
24 PF00226 DnaJ: DnaJ domain; I 99.8 3.5E-19 7.6E-24 118.7 5.4 61 50-110 1-64 (64)
25 PRK14278 chaperone protein Dna 99.8 3.4E-19 7.3E-24 156.8 6.6 66 49-114 3-69 (378)
26 KOG0715 Molecular chaperone (D 99.8 8.8E-19 1.9E-23 149.0 8.6 74 43-116 37-111 (288)
27 PRK10767 chaperone protein Dna 99.8 5.8E-19 1.3E-23 154.9 6.7 68 47-114 2-71 (371)
28 PRK14284 chaperone protein Dna 99.8 5.9E-19 1.3E-23 155.9 6.6 66 49-114 1-68 (391)
29 PRK14281 chaperone protein Dna 99.7 1.1E-18 2.4E-23 154.4 6.3 66 49-114 3-70 (397)
30 KOG0717 Molecular chaperone (D 99.7 1.6E-18 3.4E-23 152.5 5.7 73 45-117 4-79 (508)
31 PRK14289 chaperone protein Dna 99.7 3.4E-18 7.4E-23 150.7 7.5 67 48-114 4-72 (386)
32 PRK14290 chaperone protein Dna 99.7 2.9E-18 6.2E-23 150.3 6.4 66 49-114 3-71 (365)
33 PRK10266 curved DNA-binding pr 99.7 4E-18 8.7E-23 146.1 7.1 66 48-113 3-69 (306)
34 TIGR02349 DnaJ_bact chaperone 99.7 3.5E-18 7.6E-23 149.0 6.7 66 50-115 1-67 (354)
35 PRK14300 chaperone protein Dna 99.7 3.6E-18 7.8E-23 150.0 6.6 66 49-114 3-69 (372)
36 KOG0691 Molecular chaperone (D 99.7 3.7E-18 8.1E-23 145.0 6.4 70 48-117 4-75 (296)
37 PRK14292 chaperone protein Dna 99.7 6.1E-18 1.3E-22 148.4 6.8 67 49-115 2-69 (371)
38 KOG0718 Molecular chaperone (D 99.7 6.9E-18 1.5E-22 148.7 6.5 73 45-117 5-82 (546)
39 PRK14293 chaperone protein Dna 99.7 8.8E-18 1.9E-22 147.6 7.0 67 48-114 2-69 (374)
40 PTZ00341 Ring-infected erythro 99.7 1.4E-17 3E-22 157.4 7.6 73 43-115 567-640 (1136)
41 smart00271 DnaJ DnaJ molecular 99.7 6.3E-17 1.4E-21 106.1 6.1 56 49-104 1-59 (60)
42 KOG0719 Molecular chaperone (D 99.7 4.4E-17 9.6E-22 132.8 5.4 69 48-116 13-85 (264)
43 cd06257 DnaJ DnaJ domain or J- 99.7 1.1E-16 2.5E-21 103.1 5.6 53 50-102 1-55 (55)
44 KOG0721 Molecular chaperone (D 99.6 3.1E-16 6.8E-21 126.6 7.3 74 44-117 94-169 (230)
45 PHA03102 Small T antigen; Revi 99.6 8E-17 1.7E-21 125.1 2.5 66 49-116 5-72 (153)
46 COG2214 CbpA DnaJ-class molecu 99.6 7.1E-16 1.5E-20 122.7 6.5 66 47-112 4-72 (237)
47 TIGR03835 termin_org_DnaJ term 99.6 1.8E-15 4E-20 140.4 7.0 66 49-114 2-68 (871)
48 KOG0624 dsRNA-activated protei 99.6 1.9E-15 4E-20 130.2 5.9 72 45-116 390-466 (504)
49 PRK05014 hscB co-chaperone Hsc 99.6 4.5E-15 9.7E-20 117.6 7.3 66 49-114 1-75 (171)
50 PRK01356 hscB co-chaperone Hsc 99.6 5.1E-15 1.1E-19 116.7 7.1 66 49-114 2-74 (166)
51 PRK00294 hscB co-chaperone Hsc 99.5 1.5E-14 3.2E-19 114.8 7.8 70 46-115 1-79 (173)
52 PRK03578 hscB co-chaperone Hsc 99.5 2.8E-14 6.2E-19 113.5 7.8 68 48-115 5-81 (176)
53 KOG0720 Molecular chaperone (D 99.5 3.9E-14 8.6E-19 124.9 5.3 71 45-115 231-302 (490)
54 PTZ00100 DnaJ chaperone protei 99.4 1.4E-13 3E-18 102.1 5.8 59 41-101 57-115 (116)
55 KOG0714 Molecular chaperone (D 99.4 2E-13 4.3E-18 113.6 4.0 67 48-114 2-71 (306)
56 KOG0722 Molecular chaperone (D 99.4 1.8E-13 3.8E-18 113.2 3.3 73 45-117 29-102 (329)
57 KOG0550 Molecular chaperone (D 99.4 2.2E-13 4.7E-18 119.4 3.9 72 44-115 368-442 (486)
58 PRK09430 djlA Dna-J like membr 99.3 1.3E-12 2.9E-17 110.2 5.3 58 45-102 196-262 (267)
59 PHA02624 large T antigen; Prov 99.3 2.8E-12 6.1E-17 117.8 5.5 60 48-109 10-71 (647)
60 PRK01773 hscB co-chaperone Hsc 99.2 1.6E-11 3.5E-16 97.4 6.9 66 49-114 2-76 (173)
61 COG5407 SEC63 Preprotein trans 99.2 1.7E-11 3.6E-16 108.4 4.8 72 47-118 96-174 (610)
62 TIGR00714 hscB Fe-S protein as 99.1 1.5E-10 3.3E-15 90.5 6.8 55 61-115 3-64 (157)
63 KOG1150 Predicted molecular ch 99.0 5.4E-10 1.2E-14 89.7 5.1 64 47-110 51-117 (250)
64 COG5269 ZUO1 Ribosome-associat 98.9 2.2E-10 4.8E-15 95.8 1.4 67 47-113 41-114 (379)
65 KOG0568 Molecular chaperone (D 98.6 1.6E-08 3.4E-13 83.2 1.0 83 21-103 19-103 (342)
66 KOG0723 Molecular chaperone (D 98.5 1.9E-07 4.1E-12 67.9 4.8 66 36-103 43-108 (112)
67 KOG1789 Endocytosis protein RM 98.5 2E-07 4.4E-12 89.7 5.3 56 45-101 1277-1336(2235)
68 KOG3192 Mitochondrial J-type c 98.0 6.1E-06 1.3E-10 64.0 4.0 72 44-115 3-83 (168)
69 PF13459 Fer4_15: 4Fe-4S singl 97.1 0.00048 1E-08 45.7 2.9 35 142-177 1-35 (65)
70 PF13370 Fer4_13: 4Fe-4S singl 97.0 0.00023 5.1E-09 46.4 0.7 37 144-180 1-37 (58)
71 KOG0431 Auxilin-like protein a 96.8 0.0014 3.1E-08 59.4 4.2 41 60-100 399-448 (453)
72 COG1141 Fer Ferredoxin [Energy 96.8 0.00071 1.5E-08 45.7 1.7 32 142-174 3-34 (68)
73 COG1076 DjlA DnaJ-domain-conta 96.7 0.00069 1.5E-08 53.7 1.6 52 49-100 113-173 (174)
74 COG1076 DjlA DnaJ-domain-conta 96.3 0.0026 5.6E-08 50.4 2.5 65 50-114 2-75 (174)
75 PF03656 Pam16: Pam16; InterP 96.0 0.013 2.8E-07 44.4 4.7 58 45-104 54-111 (127)
76 PF12797 Fer4_2: 4Fe-4S bindin 93.2 0.027 5.8E-07 29.7 0.2 19 142-160 3-21 (22)
77 PF13446 RPT: A repeated domai 90.3 0.43 9.4E-06 31.1 3.5 28 48-75 4-31 (62)
78 PF12837 Fer4_6: 4Fe-4S bindin 89.4 0.07 1.5E-06 28.6 -0.7 20 142-161 2-21 (24)
79 PF11833 DUF3353: Protein of u 88.5 1.1 2.4E-05 36.3 5.3 40 58-103 1-40 (194)
80 KOG0724 Zuotin and related mol 88.3 0.56 1.2E-05 40.6 3.7 52 61-112 4-61 (335)
81 PF00037 Fer4: 4Fe-4S binding 83.4 0.3 6.5E-06 25.9 -0.3 20 143-162 2-21 (24)
82 PF12800 Fer4_4: 4Fe-4S bindin 77.7 1.6 3.5E-05 21.3 1.3 15 147-161 2-16 (17)
83 COG1142 HycB Fe-S-cluster-cont 72.0 1.6 3.4E-05 34.5 0.6 23 140-162 75-97 (165)
84 PF14697 Fer4_21: 4Fe-4S diclu 71.3 1.6 3.5E-05 28.3 0.4 19 143-161 2-20 (59)
85 PF13237 Fer4_10: 4Fe-4S diclu 71.0 1.8 4E-05 26.7 0.6 20 142-161 2-21 (52)
86 PF05207 zf-CSL: CSL zinc fing 70.5 0.64 1.4E-05 29.9 -1.6 33 132-164 16-55 (55)
87 PF14687 DUF4460: Domain of un 66.3 15 0.00033 27.0 4.8 45 59-103 4-54 (112)
88 PRK13409 putative ATPase RIL; 66.2 2.4 5.1E-05 39.8 0.6 20 142-161 44-63 (590)
89 PRK14028 pyruvate ferredoxin o 64.3 20 0.00044 30.6 6.0 21 142-162 242-262 (312)
90 COG1245 Predicted ATPase, RNas 60.6 3.1 6.7E-05 38.4 0.3 20 143-162 46-65 (591)
91 PRK15449 ferredoxin-like prote 60.2 4.3 9.3E-05 29.1 0.9 24 139-162 53-76 (95)
92 COG0437 HybA Fe-S-cluster-cont 58.7 3.5 7.5E-05 33.7 0.2 22 141-162 94-115 (203)
93 PF13746 Fer4_18: 4Fe-4S diclu 57.8 3.2 6.9E-05 27.7 -0.1 20 145-164 48-67 (69)
94 COG5552 Uncharacterized conser 55.4 44 0.00095 23.0 5.1 35 49-83 3-37 (88)
95 KOG3442 Uncharacterized conser 53.8 26 0.00057 26.5 4.1 55 46-102 56-110 (132)
96 PF13187 Fer4_9: 4Fe-4S diclus 53.8 6.7 0.00015 24.2 0.9 27 148-174 1-27 (55)
97 TIGR03149 cyt_nit_nrfC cytochr 53.6 3.1 6.7E-05 34.2 -0.9 28 141-168 40-67 (225)
98 COG1149 MinD superfamily P-loo 53.2 6.7 0.00014 33.6 1.0 26 142-168 94-119 (284)
99 PRK09626 oorD 2-oxoglutarate-a 52.5 5.7 0.00012 28.4 0.5 26 141-166 10-36 (103)
100 PF10041 DUF2277: Uncharacteri 52.0 67 0.0015 22.1 5.6 52 50-101 4-60 (78)
101 KOG2923 Uncharacterized conser 49.3 4.9 0.00011 26.8 -0.3 38 130-167 18-62 (67)
102 PF07709 SRR: Seven Residue Re 47.7 13 0.00028 17.1 1.1 13 89-101 2-14 (14)
103 PF13247 Fer4_11: 4Fe-4S diclu 45.8 3.8 8.3E-05 29.4 -1.3 31 140-170 33-64 (98)
104 PRK13029 2-oxoacid ferredoxin 44.6 17 0.00036 37.2 2.5 38 140-177 650-689 (1186)
105 PF12434 Malate_DH: Malate deh 44.3 28 0.0006 19.2 2.2 18 62-79 9-26 (28)
106 TIGR02494 PFLE_PFLC glycyl-rad 44.3 9.4 0.0002 32.1 0.6 23 140-162 41-63 (295)
107 COG2879 Uncharacterized small 44.3 40 0.00086 22.4 3.4 28 69-96 27-54 (65)
108 TIGR02936 fdxN_nitrog ferredox 40.9 8.4 0.00018 26.5 -0.2 22 141-162 15-36 (91)
109 TIGR00402 napF ferredoxin-type 40.5 23 0.00049 25.2 2.1 36 144-179 63-98 (101)
110 KOG2672 Lipoate synthase [Coen 40.4 7.6 0.00016 33.5 -0.5 51 131-181 100-157 (360)
111 PRK09625 porD pyruvate flavodo 40.2 8.4 0.00018 29.0 -0.3 19 144-162 86-104 (133)
112 PF06902 Fer4_19: Divergent 4F 38.8 13 0.00029 24.5 0.5 28 141-168 7-34 (64)
113 PRK09193 indolepyruvate ferred 38.4 24 0.00053 36.0 2.5 38 140-177 636-675 (1165)
114 TIGR02060 aprB adenosine phosp 37.5 25 0.00054 26.6 2.0 18 144-161 42-59 (132)
115 COG1143 NuoI Formate hydrogenl 37.0 16 0.00035 29.0 0.9 25 143-167 51-76 (172)
116 PRK08348 NADH-plastoquinone ox 36.6 13 0.00029 27.1 0.3 22 141-162 36-57 (120)
117 PF12798 Fer4_3: 4Fe-4S bindin 36.5 8.8 0.00019 18.0 -0.4 13 149-161 1-13 (15)
118 COG1146 Ferredoxin [Energy pro 36.4 23 0.00049 23.1 1.4 29 139-167 33-62 (68)
119 PRK13030 2-oxoacid ferredoxin 34.2 30 0.00065 35.4 2.4 17 141-157 623-639 (1159)
120 COG4231 Indolepyruvate ferredo 34.0 17 0.00038 34.5 0.7 29 140-168 601-629 (640)
121 COG1145 NapF Ferredoxin [Energ 33.3 19 0.00041 24.5 0.7 20 143-162 25-44 (99)
122 COG2878 Predicted NADH:ubiquin 33.2 12 0.00025 30.3 -0.5 24 139-162 107-130 (198)
123 PRK09624 porD pyuvate ferredox 32.8 53 0.0011 23.6 3.0 24 143-166 47-71 (105)
124 cd01388 SOX-TCF_HMG-box SOX-TC 31.6 1.3E+02 0.0028 19.6 4.5 41 68-111 14-54 (72)
125 TIGR02910 sulfite_red_A sulfit 30.8 20 0.00044 31.4 0.6 21 146-166 300-320 (334)
126 COG5216 Uncharacterized conser 29.9 18 0.00039 23.8 0.1 37 131-167 19-62 (67)
127 cd00084 HMG-box High Mobility 29.8 1.4E+02 0.003 18.3 4.6 42 67-111 12-53 (66)
128 PF12838 Fer4_7: 4Fe-4S diclus 29.3 18 0.00038 22.1 -0.1 22 140-161 29-50 (52)
129 PRK06991 ferredoxin; Provision 29.0 19 0.00041 30.6 0.1 20 142-161 80-99 (270)
130 COG2221 DsrA Dissimilatory sul 28.5 22 0.00048 31.0 0.4 20 142-161 196-215 (317)
131 TIGR02179 PorD_KorD 2-oxoacid: 28.1 52 0.0011 21.7 2.1 20 143-162 21-40 (78)
132 PLN00071 photosystem I subunit 27.6 28 0.00061 23.3 0.7 24 144-167 6-30 (81)
133 PF08447 PAS_3: PAS fold; Int 27.5 16 0.00034 24.1 -0.5 30 48-81 5-35 (91)
134 PRK06273 ferredoxin; Provision 27.2 19 0.0004 28.3 -0.3 20 143-162 45-64 (165)
135 PF07739 TipAS: TipAS antibiot 26.9 1.3E+02 0.0027 21.2 4.2 50 56-112 51-101 (118)
136 KOG0527 HMG-box transcription 26.9 93 0.002 27.3 4.0 42 67-111 74-115 (331)
137 PRK07569 bidirectional hydroge 26.8 41 0.0009 27.6 1.7 22 140-161 139-160 (234)
138 TIGR02910 sulfite_red_A sulfit 26.8 56 0.0012 28.7 2.6 32 147-178 220-258 (334)
139 TIGR00403 ndhI NADH-plastoquin 26.8 29 0.00064 27.5 0.8 22 141-162 56-77 (183)
140 PRK09623 vorD 2-ketoisovalerat 26.6 38 0.00083 24.2 1.3 26 142-167 46-72 (105)
141 TIGR02066 dsrB sulfite reducta 26.3 26 0.00057 30.7 0.5 21 141-161 208-228 (341)
142 PF04328 DUF466: Protein of un 25.8 1.5E+02 0.0032 19.6 4.0 28 68-95 26-53 (65)
143 KOG0063 RNAse L inhibitor, ABC 25.5 25 0.00054 32.4 0.2 22 142-163 45-66 (592)
144 PRK10882 hydrogenase 2 protein 25.4 23 0.00051 30.9 0.0 26 138-163 36-61 (328)
145 TIGR03048 PS_I_psaC photosyste 24.7 35 0.00077 22.8 0.8 25 143-167 4-29 (80)
146 PRK02651 photosystem I subunit 24.7 47 0.001 22.1 1.4 19 144-162 43-61 (81)
147 PRK08318 dihydropyrimidine deh 24.1 53 0.0012 29.2 2.1 19 143-161 338-356 (420)
148 TIGR00397 mauM_napG MauM/NapG 24.1 29 0.00063 28.3 0.3 19 143-161 171-189 (213)
149 cd01389 MATA_HMG-box MATA_HMG- 23.8 2.2E+02 0.0048 18.7 4.6 41 67-110 13-53 (77)
150 PRK05888 NADH dehydrogenase su 23.5 31 0.00067 26.6 0.4 15 148-162 59-73 (164)
151 PRK15055 anaerobic sulfite red 23.2 36 0.00078 30.0 0.8 14 149-162 309-322 (344)
152 PF15178 TOM_sub5: Mitochondri 23.2 1.4E+02 0.0031 18.6 3.2 24 52-75 2-25 (51)
153 TIGR01582 FDH-beta formate deh 23.1 23 0.0005 30.3 -0.5 30 141-170 118-148 (283)
154 KOG3256 NADH:ubiquinone oxidor 22.7 43 0.00093 26.7 1.0 26 143-168 146-171 (212)
155 TIGR01660 narH nitrate reducta 22.6 22 0.00048 32.7 -0.7 19 143-161 210-228 (492)
156 PRK14993 tetrathionate reducta 22.5 25 0.00055 29.2 -0.3 25 141-165 45-69 (244)
157 PRK08318 dihydropyrimidine deh 22.5 56 0.0012 29.1 1.9 37 143-180 373-411 (420)
158 PRK05113 electron transport co 22.2 37 0.0008 27.2 0.6 21 141-161 108-128 (191)
159 TIGR02912 sulfite_red_C sulfit 22.0 48 0.001 28.4 1.3 23 142-164 196-218 (314)
160 cd01390 HMGB-UBF_HMG-box HMGB- 21.8 2.1E+02 0.0045 17.7 4.6 39 70-111 15-53 (66)
161 CHL00014 ndhI NADH dehydrogena 21.7 39 0.00084 26.3 0.6 21 142-162 54-74 (167)
162 cd01780 PLC_epsilon_RA Ubiquit 21.2 1.1E+02 0.0023 21.9 2.7 35 48-82 10-44 (93)
163 CHL00065 psaC photosystem I su 21.1 31 0.00068 23.2 -0.1 24 144-167 6-30 (81)
164 PF12725 DUF3810: Protein of u 20.8 97 0.0021 26.9 2.9 60 48-107 81-153 (318)
165 COG4231 Indolepyruvate ferredo 20.4 77 0.0017 30.3 2.3 36 141-177 571-607 (640)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-26 Score=199.92 Aligned_cols=72 Identities=46% Similarity=0.643 Sum_probs=66.5
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C-ccHHHHHHHHHHHHHcCCchhhHHHHhhccccc
Q 029849 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAG-Q-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR 117 (186)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~-~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~ 117 (186)
+...|||+||||+++||.+|||+|||+||++||||+|+ + .|+++|++|++||+||+||++|++||+++....
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~ 74 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF 74 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence 35689999999999999999999999999999999999 3 588999999999999999999999999986543
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.4e-24 Score=180.69 Aligned_cols=75 Identities=41% Similarity=0.570 Sum_probs=67.8
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcccccc
Q 029849 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF 118 (186)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~ 118 (186)
.....+|||+||||+++|+..|||+||||||+++|||||++ .|.+.|++|+.||+|||||.+|+.||.++.....
T Consensus 11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~ 87 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK 87 (336)
T ss_pred hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence 34567899999999999999999999999999999999995 4789999999999999999999999999854433
No 3
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.6e-22 Score=169.77 Aligned_cols=69 Identities=41% Similarity=0.583 Sum_probs=64.6
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHhhcccc
Q 029849 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (186)
..+.||+||||+++|+.+|||+|||+++++||||||++ +.++|++|.+||+|||||++|.+||+++...
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-~~ekfkei~~AyevLsd~ekr~~yD~~g~~~ 70 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-AGEKFKEISQAYEVLSDPEKREIYDQYGEEG 70 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence 35789999999999999999999999999999999988 6789999999999999999999999998543
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.2e-21 Score=169.06 Aligned_cols=67 Identities=42% Similarity=0.594 Sum_probs=62.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++||.+|||+|||++|++||||+++. .++++|++|++||+||+||.+|+.||+++.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 4699999999999999999999999999999999973 467899999999999999999999999874
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=4.5e-21 Score=168.31 Aligned_cols=67 Identities=51% Similarity=0.790 Sum_probs=62.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++|+.+|||+|||+++++||||++++ .++++|++|++||+||+||.+|+.||+++.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence 5799999999999999999999999999999999974 467899999999999999999999999864
No 6
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.7e-21 Score=160.27 Aligned_cols=69 Identities=36% Similarity=0.553 Sum_probs=64.3
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--cHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
...|+|+||||+++|+.++|||+||++++++|||++++. +.++|++||+||+||+||.+|..||.++..
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~ 99 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGEL 99 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence 367899999999999999999999999999999999863 789999999999999999999999999643
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=2.2e-20 Score=165.01 Aligned_cols=66 Identities=41% Similarity=0.626 Sum_probs=62.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (186)
..|||+||||+++|+.+|||+|||+++++||||+++. .+.+.|++|++||+||+||.+|+.||+++
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 4799999999999999999999999999999999974 36789999999999999999999999985
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=2.4e-20 Score=163.71 Aligned_cols=67 Identities=43% Similarity=0.644 Sum_probs=62.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++|+.+|||+|||+++++||||+++. .++++|++|++||+||+||.+|+.||+++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 4699999999999999999999999999999999973 467899999999999999999999999864
No 9
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.81 E-value=2.9e-20 Score=165.39 Aligned_cols=70 Identities=39% Similarity=0.544 Sum_probs=63.5
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
..+...|||+||||+++||.+|||+|||+++++||||++++ .+.|++|++||+||+||.+|+.||.++..
T Consensus 23 ~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~--~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 23 REVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD--PEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred ccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch--HHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 34446799999999999999999999999999999999864 58999999999999999999999998643
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=6.6e-20 Score=160.77 Aligned_cols=67 Identities=42% Similarity=0.612 Sum_probs=62.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~---~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++|+.+|||+|||+++++||||+++. .+++.|++|++||+||+||.+|+.||.++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 5699999999999999999999999999999999874 357899999999999999999999999764
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=7.6e-20 Score=160.52 Aligned_cols=68 Identities=38% Similarity=0.639 Sum_probs=62.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
..|||+||||+++|+.+|||+|||+++++||||+++. .+++.|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 4699999999999999999999999999999999974 4678999999999999999999999998753
No 12
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.2e-19 Score=159.54 Aligned_cols=68 Identities=44% Similarity=0.733 Sum_probs=63.3
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
...|||+||||+++|+.+|||+|||+++++||||++++ .+.+.|++|++||++|+||.+|+.||+++.
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 46799999999999999999999999999999999974 567899999999999999999999999764
No 13
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.3e-19 Score=154.35 Aligned_cols=68 Identities=41% Similarity=0.652 Sum_probs=63.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
..|||+||||+++|+.+|||+|||++++++|||++++ .++++|++|++||++|+||.+|+.||.++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 4699999999999999999999999999999999974 4678999999999999999999999997653
No 14
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.3e-19 Score=159.58 Aligned_cols=67 Identities=45% Similarity=0.667 Sum_probs=62.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++|+.+|||+|||+++++||||++++ .++++|++|++||+||+||.+|+.||+++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 4699999999999999999999999999999999974 467899999999999999999999999864
No 15
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.5e-19 Score=157.79 Aligned_cols=67 Identities=49% Similarity=0.738 Sum_probs=62.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++|+.+|||+|||+++++||||++++ .+.++|++|++||+||+||.+|+.||.++.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 4699999999999999999999999999999999975 467899999999999999999999999774
No 16
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1.8e-19 Score=158.96 Aligned_cols=67 Identities=45% Similarity=0.716 Sum_probs=62.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++|+.+|||+|||+++++||||+++. .+++.|++|++||+||+||.+|+.||.++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 4699999999999999999999999999999999974 367899999999999999999999999764
No 17
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1.9e-19 Score=158.30 Aligned_cols=67 Identities=42% Similarity=0.668 Sum_probs=62.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++|+.+|||+|||+++++||||++++ .++++|++|++||+||+||.+|+.||+++.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence 4699999999999999999999999999999999974 467899999999999999999999999864
No 18
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.6e-19 Score=157.38 Aligned_cols=67 Identities=49% Similarity=0.731 Sum_probs=62.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++|+.+|||+|||+++++||||++++ .+++.|++|++||+||+||.+|+.||+++.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 4699999999999999999999999999999999974 467899999999999999999999999864
No 19
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.4e-19 Score=157.10 Aligned_cols=68 Identities=43% Similarity=0.594 Sum_probs=63.1
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
...|||+||||+++|+.+|||+|||+++++||||+++. .+++.|++|++||+||+||.+|+.||+++.
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~ 71 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGH 71 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence 35799999999999999999999999999999999974 367899999999999999999999999874
No 20
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.4e-19 Score=157.27 Aligned_cols=64 Identities=47% Similarity=0.775 Sum_probs=60.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHh
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~ 111 (186)
..|||+||||+++|+.+|||+|||+++++||||+++. .++++|++|++||+||+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 5799999999999999999999999999999999874 367899999999999999999999998
No 21
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.1e-19 Score=158.16 Aligned_cols=67 Identities=42% Similarity=0.627 Sum_probs=62.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++|+.+|||+|||+++++||||+++. .+++.|++|++||+||+||.+|+.||+++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence 4699999999999999999999999999999999974 467899999999999999999999999864
No 22
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.6e-19 Score=156.81 Aligned_cols=66 Identities=41% Similarity=0.622 Sum_probs=62.0
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
.|||+||||+++|+.+|||+|||+++++||||+++. .+.++|++|++||+||+||.+|..||.++.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~ 70 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH 70 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence 699999999999999999999999999999999974 367899999999999999999999999864
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=2.7e-19 Score=157.15 Aligned_cols=67 Identities=42% Similarity=0.638 Sum_probs=62.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++|+.+|||+|||+++++||||+++. .+++.|++|++||+||+||.+|+.||.++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 4699999999999999999999999999999999974 356899999999999999999999999864
No 24
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.77 E-value=3.5e-19 Score=118.68 Aligned_cols=61 Identities=44% Similarity=0.769 Sum_probs=57.2
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHcCCchhhHHHH
Q 029849 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYD 110 (186)
Q Consensus 50 d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD 110 (186)
|||+||||+++++.++||++|+++++++|||+++.. +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 689999999999999999999999999999997653 4688999999999999999999998
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.4e-19 Score=156.79 Aligned_cols=66 Identities=39% Similarity=0.603 Sum_probs=61.8
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
.|||+||||+++|+.+|||+|||+++++||||++++ .+++.|++|++||+||+||.+|+.||+++.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 699999999999999999999999999999999975 356899999999999999999999999764
No 26
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.8e-19 Score=149.01 Aligned_cols=74 Identities=39% Similarity=0.623 Sum_probs=66.6
Q ss_pred cCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhcccc
Q 029849 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (186)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (186)
.......|||+||||+++|+..|||+||++|++++|||.+.+ .+.+.|++|.+||+||+|+.+|..||..+...
T Consensus 37 s~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 37 SRIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 334444599999999999999999999999999999999985 57899999999999999999999999998754
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=5.8e-19 Score=154.88 Aligned_cols=68 Identities=46% Similarity=0.652 Sum_probs=62.6
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
...|||+||||+++|+.+|||+|||+++++||||+++. .+++.|++|++||++|+||.+|+.||.++.
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 71 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH 71 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence 35699999999999999999999999999999999873 367899999999999999999999999764
No 28
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=5.9e-19 Score=155.86 Aligned_cols=66 Identities=42% Similarity=0.625 Sum_probs=61.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
.|||+||||+++|+.+|||+|||+++++||||++++ .+++.|++|++||+||+||.+|+.||+++.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 389999999999999999999999999999999974 367899999999999999999999999864
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.1e-18 Score=154.39 Aligned_cols=66 Identities=50% Similarity=0.745 Sum_probs=61.8
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
.|||+||||+++|+.+|||+|||+++++||||+++. .+++.|++|++||++|+||.+|+.||.++.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 699999999999999999999999999999999974 357899999999999999999999999764
No 30
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.6e-18 Score=152.47 Aligned_cols=73 Identities=40% Similarity=0.611 Sum_probs=65.8
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHHHcCCchhhHHHHhhccccc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR 117 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~---~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~ 117 (186)
+...+.||+||||.++|++.+||++||++||+|||||+|+ ++.+.|+.|+.||+|||||+.|+.||....+..
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil 79 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL 79 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence 3456789999999999999999999999999999999985 467899999999999999999999998876443
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3.4e-18 Score=150.74 Aligned_cols=67 Identities=45% Similarity=0.593 Sum_probs=62.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++|+.+|||+|||+++++||||+++. .+.+.|++|++||++|+||.+|+.||.++.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 5799999999999999999999999999999999974 467899999999999999999999999764
No 32
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=2.9e-18 Score=150.28 Aligned_cols=66 Identities=39% Similarity=0.688 Sum_probs=61.8
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~---~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
.|||+||||+++|+.+|||+|||++++++|||+++. .+.+.|++|++||++|+||.+|+.||.++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~ 71 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT 71 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence 599999999999999999999999999999999874 367899999999999999999999999764
No 33
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.73 E-value=4e-18 Score=146.12 Aligned_cols=66 Identities=35% Similarity=0.625 Sum_probs=61.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (186)
..|||+||||+++|+.+|||+|||++++++|||+++. .+.+.|++|++||++|+||.+|+.||.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 3699999999999999999999999999999999864 46789999999999999999999999875
No 34
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.73 E-value=3.5e-18 Score=149.04 Aligned_cols=66 Identities=48% Similarity=0.723 Sum_probs=61.4
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 50 d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
|||+||||+++|+.++||+|||+++++||||++++ .+.+.|++|++||+||+|+.+|+.||.++..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence 79999999999999999999999999999999974 4678999999999999999999999997643
No 35
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.6e-18 Score=149.97 Aligned_cols=66 Identities=38% Similarity=0.608 Sum_probs=61.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
.|||+||||+++|+.+|||+|||+++++||||++++ .+++.|++|++||++|+|+.+|+.||.++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence 699999999999999999999999999999999874 467899999999999999999999999764
No 36
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.7e-18 Score=144.98 Aligned_cols=70 Identities=40% Similarity=0.591 Sum_probs=65.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhccccc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR 117 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~ 117 (186)
..|||+||||+++++..+|++|||+.++++||||||+ .+.+.|+.|.+||+||+|+.+|..||..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 6799999999999999999999999999999999984 478999999999999999999999999986543
No 37
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=6.1e-18 Score=148.42 Aligned_cols=67 Identities=48% Similarity=0.664 Sum_probs=62.3
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
.|||+||||+++|+.++||+|||++++++|||++++ .+.++|++|++||+||+||.+|+.||.++..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 489999999999999999999999999999999975 4678999999999999999999999998643
No 38
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.9e-18 Score=148.67 Aligned_cols=73 Identities=32% Similarity=0.441 Sum_probs=65.1
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----cHHHHHHHHHHHHHcCCchhhHHHHhhccccc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR 117 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~-----~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~ 117 (186)
...+.+||.+|||+++|+.+|||+|||++++.|||||..++ |++.|+.|.+|||||+||++|++||.++.++.
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL 82 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGL 82 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccc
Confidence 34566999999999999999999999999999999997632 57889999999999999999999999976543
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=8.8e-18 Score=147.62 Aligned_cols=67 Identities=40% Similarity=0.695 Sum_probs=62.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++|+.+|||+|||++++++|||++++ .+++.|++|++||+||+||.+|+.||.++.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 3599999999999999999999999999999999875 467899999999999999999999999764
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.71 E-value=1.4e-17 Score=157.44 Aligned_cols=73 Identities=32% Similarity=0.428 Sum_probs=65.9
Q ss_pred cCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
.......+||+||||+++|+..+||+|||++|+++|||+++. .+.+.|+.|++||+||+||.+|+.||.++..
T Consensus 567 t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 567 TIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 444567899999999999999999999999999999999974 4678999999999999999999999998654
No 41
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.68 E-value=6.3e-17 Score=106.12 Aligned_cols=56 Identities=48% Similarity=0.732 Sum_probs=51.8
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHHHcCCch
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGD 104 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~---~~~~~f~~i~~AY~vL~d~~ 104 (186)
.|||+||||+++++.++||++|+++++.+|||+++. .+.+.|.+|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999874 36789999999999999985
No 42
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.4e-17 Score=132.78 Aligned_cols=69 Identities=36% Similarity=0.564 Sum_probs=62.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----ccHHHHHHHHHHHHHcCCchhhHHHHhhcccc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ----KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~----~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (186)
..|+|+||||.++|+..+|++||+++++++|||+++. ++.+.|++|+.||.||+|.++|+.||..+...
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 4499999999999999999999999999999999963 36789999999999999999999999886544
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.67 E-value=1.1e-16 Score=103.05 Aligned_cols=53 Identities=49% Similarity=0.806 Sum_probs=49.8
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCC
Q 029849 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMR 102 (186)
Q Consensus 50 d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d 102 (186)
|||+||||+++++.++||++|+++++++|||+++. .+.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999985 467899999999999986
No 44
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.1e-16 Score=126.59 Aligned_cols=74 Identities=32% Similarity=0.495 Sum_probs=66.2
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-c-cHHHHHHHHHHHHHcCCchhhHHHHhhccccc
Q 029849 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-K-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR 117 (186)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~ 117 (186)
......|+|+||||+++++..|||+|||+|++++||||+++ + .++.|..|++||+.|+|+..|..|..++....
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 45567799999999999999999999999999999999986 3 46778899999999999999999999976654
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.63 E-value=8e-17 Score=125.09 Aligned_cols=66 Identities=26% Similarity=0.300 Sum_probs=60.5
Q ss_pred cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHhhcccc
Q 029849 49 KNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (186)
Q Consensus 49 ~d~Y~iLgv~~~a--s~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (186)
..+|+||||+++| |.++||+|||++++++|||++++ .+.|++|++||++|+|+.+|..||..+...
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~--~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD--EEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch--hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 4689999999999 99999999999999999999754 578999999999999999999999987544
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=7.1e-16 Score=122.75 Aligned_cols=66 Identities=44% Similarity=0.667 Sum_probs=61.7
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHcCCchhhHHHHhh
Q 029849 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDAS 112 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~ 112 (186)
...+||+||||+++|+..||+++||++++++|||+++.. +.+.|+.|++||++|+|+.+|..||..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 467999999999999999999999999999999999853 568999999999999999999999985
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.59 E-value=1.8e-15 Score=140.42 Aligned_cols=66 Identities=42% Similarity=0.630 Sum_probs=61.3
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
.|||+||||+++|+.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|+.||.++.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 599999999999999999999999999999999875 356789999999999999999999999764
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.58 E-value=1.9e-15 Score=130.18 Aligned_cols=72 Identities=35% Similarity=0.587 Sum_probs=64.1
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----cHHHHHHHHHHHHHcCCchhhHHHHhhcccc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~-----~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (186)
....+|||+||||.++|+..||.+|||+++.+||||-..++ ++++|.-|..|-+||+||++|+.||..-.+.
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPL 466 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPL 466 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCC
Confidence 34578999999999999999999999999999999987643 5678999999999999999999999876543
No 49
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.58 E-value=4.5e-15 Score=117.61 Aligned_cols=66 Identities=26% Similarity=0.513 Sum_probs=58.1
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------cHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 49 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 49 ~d~Y~iLgv~~~--as~~eIk~ayr~~~~~~HPDk~~~~-------~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
.|||+||||++. ++..+|+++||++++++|||+.... +.+.+..||+||++|+||.+|..|+..+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 389999999996 6889999999999999999997532 24578899999999999999999997765
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.57 E-value=5.1e-15 Score=116.73 Aligned_cols=66 Identities=32% Similarity=0.445 Sum_probs=58.1
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc-----HHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 49 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKG-----HEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 49 ~d~Y~iLgv~~~--as~~eIk~ayr~~~~~~HPDk~~~~~-----~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
.|||+||||++. ++..+|+++||++++++|||+..... .+.+..||+||+||+||.+|..|+..+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 489999999997 78999999999999999999986432 2346799999999999999999998875
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.55 E-value=1.5e-14 Score=114.80 Aligned_cols=70 Identities=23% Similarity=0.346 Sum_probs=61.2
Q ss_pred CCccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------cHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 46 SKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 46 ~~~~d~Y~iLgv~~~--as~~eIk~ayr~~~~~~HPDk~~~~-------~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
+...|||++|||++. .+..+|+++||++++++|||+.... +.+.+..||+||+||+||.+|..|+..+..
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g 79 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSG 79 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence 356799999999998 6789999999999999999998642 245688999999999999999999987753
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.52 E-value=2.8e-14 Score=113.48 Aligned_cols=68 Identities=25% Similarity=0.380 Sum_probs=58.4
Q ss_pred ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc--c-----HHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 48 KKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK--G-----HEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 48 ~~d~Y~iLgv~~~--as~~eIk~ayr~~~~~~HPDk~~~~--~-----~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
..|||+||||++. ++..+|+++||++++++|||+.+.. . .+.+..||+||++|+||.+|..|+..+.+
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G 81 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRG 81 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcC
Confidence 4699999999996 6899999999999999999998632 2 23457999999999999999999987653
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.9e-14 Score=124.89 Aligned_cols=71 Identities=25% Similarity=0.380 Sum_probs=65.0
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
..+..|+|.+|||+++++.++||+.||++|...|||||.. .|++.|+.|+.||++|+|+.+|+.||..+..
T Consensus 231 e~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 231 ELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred hhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 3347899999999999999999999999999999999985 4789999999999999999999999988744
No 54
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.45 E-value=1.4e-13 Score=102.13 Aligned_cols=59 Identities=31% Similarity=0.418 Sum_probs=51.9
Q ss_pred CccCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcC
Q 029849 41 AGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLM 101 (186)
Q Consensus 41 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~ 101 (186)
.....+...++|+||||+++++.+|||++||++++++|||+.+ ..+.+++|++||++|.
T Consensus 57 ~f~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG--s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 57 GFENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG--STYIASKVNEAKDLLL 115 (116)
T ss_pred cccCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHh
Confidence 3355666789999999999999999999999999999999853 4578899999999985
No 55
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2e-13 Score=113.55 Aligned_cols=67 Identities=40% Similarity=0.600 Sum_probs=61.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||+|.++|+..+|++||+++++++|||+++.. +...|++|.+||++|+|+.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46899999999999999999999999999999998765 44578999999999999999999999986
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.8e-13 Score=113.24 Aligned_cols=73 Identities=32% Similarity=0.553 Sum_probs=65.2
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhccccc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR 117 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~ 117 (186)
.....|.|+||||.+.++..||.+|||+|++++|||++++ ++.+.|+.|..||++|.|...|..||-.+....
T Consensus 29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd 102 (329)
T KOG0722|consen 29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHPD 102 (329)
T ss_pred cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCch
Confidence 3456699999999999999999999999999999999985 466899999999999999999999998775443
No 57
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.2e-13 Score=119.36 Aligned_cols=72 Identities=35% Similarity=0.534 Sum_probs=65.0
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~---~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
+..++.|||.||||.++++..+||+|||++++.+|||++.. +++..|++|-+||.+|+||.+|..||.....
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dl 442 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDL 442 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccch
Confidence 35568899999999999999999999999999999999863 4678999999999999999999999977543
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.33 E-value=1.3e-12 Score=110.19 Aligned_cols=58 Identities=34% Similarity=0.540 Sum_probs=51.0
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------ccHHHHHHHHHHHHHcCC
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---------KGHEHTLLLNEAYKVLMR 102 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~---------~~~~~f~~i~~AY~vL~d 102 (186)
.+...++|+||||++++|.++||++||++++++|||+... .+.++|++|++||++|+.
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999999632 246799999999999985
No 59
>PHA02624 large T antigen; Provisional
Probab=99.29 E-value=2.8e-12 Score=117.83 Aligned_cols=60 Identities=35% Similarity=0.502 Sum_probs=56.3
Q ss_pred ccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHH
Q 029849 48 KKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDY 109 (186)
Q Consensus 48 ~~d~Y~iLgv~~~a--s~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~Y 109 (186)
..++|+||||+++| +.++||+|||++++++|||+++ +.+.|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG--deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG--DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC--cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 9999999999999999999974 458899999999999999999998
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.24 E-value=1.6e-11 Score=97.41 Aligned_cols=66 Identities=24% Similarity=0.378 Sum_probs=58.0
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc-------HHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 49 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 49 ~d~Y~iLgv~~~--as~~eIk~ayr~~~~~~HPDk~~~~~-------~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
.|||++|||++. .+..+|++.|+++.+++|||+..... .+....||+||.+|+||.+|+.|=..+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 589999999998 89999999999999999999975432 3356789999999999999999987765
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.19 E-value=1.7e-11 Score=108.41 Aligned_cols=72 Identities=28% Similarity=0.408 Sum_probs=63.9
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----cHHHHHHHHHHHHHcCCchhhHHHHhhcccccc
Q 029849 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---K----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF 118 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~---~----~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~ 118 (186)
...|+|+||||+.+++..+||++||+++.++||||.++ + -++.+++|++||..|+|...|..|-.++.....
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 45699999999999999999999999999999999875 1 257789999999999999999999998765544
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.12 E-value=1.5e-10 Score=90.52 Aligned_cols=55 Identities=29% Similarity=0.475 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc-------cHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 61 ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 61 as~~eIk~ayr~~~~~~HPDk~~~~-------~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
.+..+|+++||++++++|||+.+.. +.+.+..||+||++|+||.+|+.|+..+..
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g 64 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHG 64 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence 4788999999999999999986532 346788999999999999999999988763
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.4e-10 Score=89.74 Aligned_cols=64 Identities=30% Similarity=0.442 Sum_probs=57.0
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHcCCchhhHHHH
Q 029849 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYD 110 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD 110 (186)
-+.|+|+||.|.|..+.++||+.||++++..|||||++. |...|..|.+||..|-|+.-|..-+
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 367999999999999999999999999999999999965 5678999999999999998665433
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.2e-10 Score=95.79 Aligned_cols=67 Identities=37% Similarity=0.440 Sum_probs=58.8
Q ss_pred CccccccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCC----ccHHHHHHHHHHHHHcCCchhhHHHHhhc
Q 029849 47 KKKNYYELLGVSVE---ANGQEIKEAYRKLQKKYHPDIAGQ----KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~---as~~eIk~ayr~~~~~~HPDk~~~----~~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (186)
+..|+|.+|||+.- +++.+|.++.++.+.+||||+... ...+.|+.|+.||+||+|+.+|..||..-
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 45799999999864 889999999999999999999742 23678999999999999999999999654
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.6e-08 Score=83.17 Aligned_cols=83 Identities=24% Similarity=0.380 Sum_probs=63.0
Q ss_pred CCCCcccCCcccceeeccCCCccCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-HHHHHHHHHHHH-
Q 029849 21 SSLRARWGQRCSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG-HEHTLLLNEAYK- 98 (186)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~~-~~~f~~i~~AY~- 98 (186)
...|-.+-+....++....+.-.+...-..+|.||||..+++..+++.+|.++++++|||...+++ .+.|.+|.+||.
T Consensus 19 ~~~rvkmlpyfgiirnrll~~~kske~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrk 98 (342)
T KOG0568|consen 19 AINRVKMLPYFGIIRNRLLHLHKSKEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRK 98 (342)
T ss_pred ccchhcccchhhhHHHHHHHHhhhHHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHH
Confidence 333444444445555555544444445678999999999999999999999999999999987654 678999999998
Q ss_pred HcCCc
Q 029849 99 VLMRG 103 (186)
Q Consensus 99 vL~d~ 103 (186)
||+..
T Consensus 99 vlq~~ 103 (342)
T KOG0568|consen 99 VLQEK 103 (342)
T ss_pred HHHHH
Confidence 77643
No 66
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.9e-07 Score=67.88 Aligned_cols=66 Identities=26% Similarity=0.273 Sum_probs=55.7
Q ss_pred eccCCCccCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCc
Q 029849 36 CCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 103 (186)
Q Consensus 36 ~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~ 103 (186)
..........|.+...-.||||.++++.+.||.|+|++.+..|||+...+ -.-.+||||+++|...
T Consensus 43 ~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 43 AFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--YLASKINEAKDLLEGT 108 (112)
T ss_pred hhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--HHHHHHHHHHHHHhcc
Confidence 44444557778888899999999999999999999999999999998765 3446799999999754
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2e-07 Score=89.74 Aligned_cols=56 Identities=32% Similarity=0.470 Sum_probs=48.2
Q ss_pred CCCccccccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcC
Q 029849 45 ASKKKNYYELLGVSVE----ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLM 101 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~----as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~ 101 (186)
.+..-+.|+||.|+-+ -..+.||++|+|++.+|||||||. +.+.|..+|+||+.|.
T Consensus 1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE-GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE-GREMFERVNKAYELLS 1336 (2235)
T ss_pred ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHHHH
Confidence 3445679999999855 356899999999999999999965 5788999999999998
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=6.1e-06 Score=63.99 Aligned_cols=72 Identities=25% Similarity=0.507 Sum_probs=57.7
Q ss_pred CCCCccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCC-------CccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 44 RASKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAG-------QKGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~--as~~eIk~ayr~~~~~~HPDk~~-------~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
......+||.++|.... ..+..++..|.-..+++|||+.. +-+.+...++|+||.+|.||.+|+.|=..+.
T Consensus 3 ~~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 3 KMGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred ccchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 34556799999986644 56777777999999999999853 2245678899999999999999999987764
Q ss_pred c
Q 029849 115 Q 115 (186)
Q Consensus 115 ~ 115 (186)
.
T Consensus 83 g 83 (168)
T KOG3192|consen 83 G 83 (168)
T ss_pred C
Confidence 4
No 69
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=97.10 E-value=0.00048 Score=45.75 Aligned_cols=35 Identities=43% Similarity=0.830 Sum_probs=31.7
Q ss_pred ccccccccccCCcccccCcceEEeeCCCCceEEeee
Q 029849 142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQ 177 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~F~~e~~~g~a~~~~~ 177 (186)
+.+|...|+||+.|...+|..|.++++ |.+.++..
T Consensus 1 V~vD~~~C~gcg~C~~~aP~vF~~d~~-g~a~~~~~ 35 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPEVFELDDD-GKAVVLVD 35 (65)
T ss_pred CEEecccCcCccHHHhhCCccEEECCC-CCEEEEec
Confidence 457899999999999999999999999 99888865
No 70
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=97.00 E-value=0.00023 Score=46.42 Aligned_cols=37 Identities=41% Similarity=0.598 Sum_probs=28.5
Q ss_pred ccccccccCCcccccCcceEEeeCCCCceEEeeecCC
Q 029849 144 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGD 180 (186)
Q Consensus 144 ~~e~~~igC~~C~~~~~~~F~~e~~~g~a~~~~~~~~ 180 (186)
||...||+|+-|...+|..|.++++.|.+.++.|.-.
T Consensus 1 VD~~~Ci~Cg~C~~~aP~vF~~~d~~~~~~v~~~~~~ 37 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPDVFDYDDDGGKAVVLDQPVP 37 (58)
T ss_dssp E-TTT--S-SHHHHH-TTTEEEETTSTEEECTTCCCS
T ss_pred CChhhCcCCChHHHhCcHheeEcCCCCeEEEeCCCcC
Confidence 5678999999999999999999999889888888744
No 71
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.79 E-value=0.0014 Score=59.36 Aligned_cols=41 Identities=32% Similarity=0.353 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc-c--------HHHHHHHHHHHHHc
Q 029849 60 EANGQEIKEAYRKLQKKYHPDIAGQK-G--------HEHTLLLNEAYKVL 100 (186)
Q Consensus 60 ~as~~eIk~ayr~~~~~~HPDk~~~~-~--------~~~f~~i~~AY~vL 100 (186)
-.+.++||++|||+.|..||||.++. + ++.|-.+++||+..
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 36899999999999999999998754 2 34455566666543
No 72
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=96.79 E-value=0.00071 Score=45.73 Aligned_cols=32 Identities=41% Similarity=0.850 Sum_probs=29.0
Q ss_pred ccccccccccCCcccccCcceEEeeCCCCceEE
Q 029849 142 LFVDENACIGCRECVHHASNTFVMDEATGCARV 174 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~F~~e~~~g~a~~ 174 (186)
+.+|..+||||..|...+|..|.++++ |.+++
T Consensus 3 v~vDrd~Cigcg~C~~~aPdvF~~~d~-G~a~~ 34 (68)
T COG1141 3 VIVDRDTCIGCGACLAVAPDVFDYDDE-GIAFV 34 (68)
T ss_pred EEechhhccccchhhhcCCcceeeCCC-cceEe
Confidence 468999999999999999999999999 77766
No 73
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.00069 Score=53.69 Aligned_cols=52 Identities=38% Similarity=0.583 Sum_probs=44.4
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------ccHHHHHHHHHHHHHc
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---------KGHEHTLLLNEAYKVL 100 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~---------~~~~~f~~i~~AY~vL 100 (186)
.+.|.+|++...+...+|+++|+++....|||+... .+.+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999997531 2456778899998753
No 74
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0026 Score=50.44 Aligned_cols=65 Identities=29% Similarity=0.492 Sum_probs=50.8
Q ss_pred ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc-------HHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 50 NYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 50 d~Y~iLgv~~~a--s~~eIk~ayr~~~~~~HPDk~~~~~-------~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
+++.++|+++.+ ..+.++..|+.+.+.+|||+..... .+.+..++.||.+|.+|.+|..|=..+.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 455566666654 4567899999999999999976431 2467789999999999999999976654
No 75
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.01 E-value=0.013 Score=44.39 Aligned_cols=58 Identities=21% Similarity=0.183 Sum_probs=40.8
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCch
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGD 104 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~ 104 (186)
.+....-..||||++..+.++|.+.|.+|-...+|++.+.. -...+|..|.+.|....
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSf--YLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSF--YLQSKVFRAKERLEQEL 111 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-H--HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCH--HHHHHHHHHHHHHHHHH
Confidence 45666789999999999999999999999999999987542 44457888888887544
No 76
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=93.24 E-value=0.027 Score=29.69 Aligned_cols=19 Identities=32% Similarity=0.850 Sum_probs=16.2
Q ss_pred ccccccccccCCcccccCc
Q 029849 142 LFVDENACIGCRECVHHAS 160 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~ 160 (186)
+++|...|+||+.|...++
T Consensus 3 ~~iD~~rCiGC~~C~~AC~ 21 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACP 21 (22)
T ss_pred eEEccccccCchhHHHhhC
Confidence 4789999999999987664
No 77
>PF13446 RPT: A repeated domain in UCH-protein
Probab=90.29 E-value=0.43 Score=31.06 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=25.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHH
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQK 75 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~ 75 (186)
-.+.|++|||+++.+.+.|..+|+....
T Consensus 4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 4 VEEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999876
No 78
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=89.44 E-value=0.07 Score=28.59 Aligned_cols=20 Identities=35% Similarity=1.026 Sum_probs=17.4
Q ss_pred ccccccccccCCcccccCcc
Q 029849 142 LFVDENACIGCRECVHHASN 161 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~ 161 (186)
+.+|+..|+||+.|...+|.
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~ 21 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPE 21 (24)
T ss_pred cEEChhhCcChhHHHHhcch
Confidence 35799999999999999885
No 79
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=88.50 E-value=1.1 Score=36.25 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCc
Q 029849 58 SVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 103 (186)
Q Consensus 58 ~~~as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~ 103 (186)
+++|+.+||.+|+.++..+|-- +++...+|..||+.+.=.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~g------d~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAG------DEKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHH
Confidence 4789999999999999888832 235567899999865533
No 80
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=88.29 E-value=0.56 Score=40.56 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC------ccHHHHHHHHHHHHHcCCchhhHHHHhh
Q 029849 61 ANGQEIKEAYRKLQKKYHPDIAGQ------KGHEHTLLLNEAYKVLMRGDLRKDYDAS 112 (186)
Q Consensus 61 as~~eIk~ayr~~~~~~HPDk~~~------~~~~~f~~i~~AY~vL~d~~~R~~YD~~ 112 (186)
++..+|+.+|+..++..||++... ...+.++.|.+||++|.+...|...|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 567889999999999999998741 3457789999999999986665555544
No 81
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=83.43 E-value=0.3 Score=25.93 Aligned_cols=20 Identities=35% Similarity=0.908 Sum_probs=16.1
Q ss_pred cccccccccCCcccccCcce
Q 029849 143 FVDENACIGCRECVHHASNT 162 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~~ 162 (186)
.+|...|++|+.|...+|..
T Consensus 2 ~id~~~C~~Cg~C~~~CP~~ 21 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPFD 21 (24)
T ss_dssp EEETTTSSS-THHHHHSTTS
T ss_pred EEchHHCCCcchhhhhcccc
Confidence 46889999999999998863
No 82
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=77.65 E-value=1.6 Score=21.25 Aligned_cols=15 Identities=40% Similarity=1.061 Sum_probs=12.7
Q ss_pred cccccCCcccccCcc
Q 029849 147 NACIGCRECVHHASN 161 (186)
Q Consensus 147 ~~~igC~~C~~~~~~ 161 (186)
..|++|+.|...+|.
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 468999999998875
No 83
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=71.97 E-value=1.6 Score=34.51 Aligned_cols=23 Identities=43% Similarity=0.801 Sum_probs=20.1
Q ss_pred CcccccccccccCCcccccCcce
Q 029849 140 EALFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 140 ~~~~~~e~~~igC~~C~~~~~~~ 162 (186)
..+.|+++.||||+.|...+|++
T Consensus 75 ~~v~V~~ekCiGC~~C~~aCPfG 97 (165)
T COG1142 75 GAVQVDEEKCIGCKLCVVACPFG 97 (165)
T ss_pred CceEEchhhccCcchhhhcCCcc
Confidence 36678999999999999999984
No 84
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=71.26 E-value=1.6 Score=28.28 Aligned_cols=19 Identities=42% Similarity=1.137 Sum_probs=12.2
Q ss_pred cccccccccCCcccccCcc
Q 029849 143 FVDENACIGCRECVHHASN 161 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~ 161 (186)
.+|+..||||+.|...+|.
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~ 20 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPD 20 (59)
T ss_dssp EE-TTT----SCCCHHCCC
T ss_pred EECcccccChhhHHhHcCc
Confidence 3789999999999999995
No 85
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=70.96 E-value=1.8 Score=26.65 Aligned_cols=20 Identities=40% Similarity=1.052 Sum_probs=8.6
Q ss_pred ccccccccccCCcccccCcc
Q 029849 142 LFVDENACIGCRECVHHASN 161 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~ 161 (186)
+.+|+..|++|+.|...+|.
T Consensus 2 i~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp ----TT------TTGGG-TT
T ss_pred CccCcccCcCCcChHHHccc
Confidence 46899999999999999998
No 86
>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.
Probab=70.52 E-value=0.64 Score=29.92 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=23.8
Q ss_pred CCCCCCCCCcccc-------cccccccCCcccccCcceEE
Q 029849 132 SWKGPPRPEALFV-------DENACIGCRECVHHASNTFV 164 (186)
Q Consensus 132 ~~~~~~~~~~~~~-------~e~~~igC~~C~~~~~~~F~ 164 (186)
.|..++|++..|+ .....++|..|+++..+.|.
T Consensus 16 ~~~y~CRCG~~f~i~e~~l~~~~~iv~C~sCSL~I~V~~~ 55 (55)
T PF05207_consen 16 VYSYPCRCGGEFEISEEDLEEGEVIVQCDSCSLWIRVNYD 55 (55)
T ss_dssp EEEEEETTSSEEEEEHHHHHCT--EEEETTTTEEEEEE--
T ss_pred EEEEcCCCCCEEEEcchhccCcCEEEECCCCccEEEEEeC
Confidence 4778889988775 23457999999999988773
No 87
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=66.33 E-value=15 Score=27.04 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCc------cHHHHHHHHHHHHHcCCc
Q 029849 59 VEANGQEIKEAYRKLQKKYHPDIAGQK------GHEHTLLLNEAYKVLMRG 103 (186)
Q Consensus 59 ~~as~~eIk~ayr~~~~~~HPDk~~~~------~~~~f~~i~~AY~vL~d~ 103 (186)
+..+..+++.|.|..-++.|||...+. +++-++.|+.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 345678999999999999999965431 234456666655666543
No 88
>PRK13409 putative ATPase RIL; Provisional
Probab=66.22 E-value=2.4 Score=39.83 Aligned_cols=20 Identities=35% Similarity=0.808 Sum_probs=18.1
Q ss_pred ccccccccccCCcccccCcc
Q 029849 142 LFVDENACIGCRECVHHASN 161 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~ 161 (186)
-++.|++||||+=|+..||+
T Consensus 44 ~~~~e~~c~~c~~c~~~cp~ 63 (590)
T PRK13409 44 PVISEELCIGCGICVKKCPF 63 (590)
T ss_pred ceeeHhhccccccccccCCc
Confidence 35789999999999999998
No 89
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=64.34 E-value=20 Score=30.61 Aligned_cols=21 Identities=29% Similarity=0.695 Sum_probs=18.0
Q ss_pred ccccccccccCCcccccCcce
Q 029849 142 LFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~ 162 (186)
-.+++..|++|..|...||..
T Consensus 242 p~id~~~Ci~C~~C~~~CP~~ 262 (312)
T PRK14028 242 PVIDHSKCIMCRKCWLYCPDD 262 (312)
T ss_pred eEECcccCcCcccccccCChh
Confidence 356889999999999999964
No 90
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=60.64 E-value=3.1 Score=38.35 Aligned_cols=20 Identities=35% Similarity=0.846 Sum_probs=17.8
Q ss_pred cccccccccCCcccccCcce
Q 029849 143 FVDENACIGCRECVHHASNT 162 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~~ 162 (186)
++-|++|+||+-|+..||+.
T Consensus 46 vIsE~lCiGCGICvkkCPF~ 65 (591)
T COG1245 46 VISEELCIGCGICVKKCPFD 65 (591)
T ss_pred eeEhhhhccchhhhccCCcc
Confidence 57789999999999999983
No 91
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=60.22 E-value=4.3 Score=29.14 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=19.7
Q ss_pred CCcccccccccccCCcccccCcce
Q 029849 139 PEALFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 139 ~~~~~~~e~~~igC~~C~~~~~~~ 162 (186)
...+.++...|++|+.|...++..
T Consensus 53 ~G~V~vd~e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 53 DGSVRFDYAGCLECGTCRILGLGS 76 (95)
T ss_pred CCCEEEcCCCCCcchhhhhhcCCC
Confidence 356788999999999999987543
No 92
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=58.69 E-value=3.5 Score=33.66 Aligned_cols=22 Identities=32% Similarity=0.827 Sum_probs=18.5
Q ss_pred cccccccccccCCcccccCcce
Q 029849 141 ALFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~~ 162 (186)
-+.+|...||||+.|...+|..
T Consensus 94 iV~vd~d~CIGC~yCi~ACPyg 115 (203)
T COG0437 94 IVLVDKDLCIGCGYCIAACPYG 115 (203)
T ss_pred EEEecCCcccCchHHHhhCCCC
Confidence 3456899999999999999873
No 93
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=57.78 E-value=3.2 Score=27.71 Aligned_cols=20 Identities=30% Similarity=0.783 Sum_probs=16.5
Q ss_pred cccccccCCcccccCcceEE
Q 029849 145 DENACIGCRECVHHASNTFV 164 (186)
Q Consensus 145 ~e~~~igC~~C~~~~~~~F~ 164 (186)
....|+||+.|+.++|....
T Consensus 48 ~~~~CVgCgrCv~~CP~~Id 67 (69)
T PF13746_consen 48 GEGDCVGCGRCVRVCPAGID 67 (69)
T ss_pred CCccCCCcChHhhhcCCCCC
Confidence 55669999999999997643
No 94
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=55.41 E-value=44 Score=23.04 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=27.5
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAG 83 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~ 83 (186)
.|.-+++|++|-|++.||+.|-++.++++.--..|
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 45567899999999999999998888877544443
No 95
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.76 E-value=26 Score=26.46 Aligned_cols=55 Identities=18% Similarity=0.118 Sum_probs=39.2
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCC
Q 029849 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR 102 (186)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d 102 (186)
+.-..--+||+|+...+.++|.+.|..|-....+.|.+.- ....++..|-+-|..
T Consensus 56 iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSF--YLQSKVfRAkErld~ 110 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSF--YLQSKVFRAKERLDE 110 (132)
T ss_pred ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcce--eehHHHHHHHHHHHH
Confidence 4455677899999999999999999999888877766532 122345555555543
No 96
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=53.75 E-value=6.7 Score=24.19 Aligned_cols=27 Identities=30% Similarity=0.672 Sum_probs=16.5
Q ss_pred ccccCCcccccCcceEEeeCCCCceEE
Q 029849 148 ACIGCRECVHHASNTFVMDEATGCARV 174 (186)
Q Consensus 148 ~~igC~~C~~~~~~~F~~e~~~g~a~~ 174 (186)
.||||+.|+..+|......+..+....
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~~~~ 27 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGGKKV 27 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTTCEE
T ss_pred CCCCcchHHHHCCccCeEccCcccccc
Confidence 488999999988886665555444333
No 97
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=53.57 E-value=3.1 Score=34.20 Aligned_cols=28 Identities=32% Similarity=0.716 Sum_probs=22.8
Q ss_pred cccccccccccCCcccccCcceEEeeCC
Q 029849 141 ALFVDENACIGCRECVHHASNTFVMDEA 168 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~~F~~e~~ 168 (186)
.+++|+..|+||+.|...++....+.+.
T Consensus 40 ~~~iD~~rCigC~~C~~aC~~~~~~~~~ 67 (225)
T TIGR03149 40 GMVHDETACIGCTACMDACREVNKVPEG 67 (225)
T ss_pred EEEEEHHHCcCcHHHHHHhhHHhCCCCC
Confidence 4678999999999999999986655443
No 98
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=53.17 E-value=6.7 Score=33.57 Aligned_cols=26 Identities=19% Similarity=0.581 Sum_probs=21.8
Q ss_pred ccccccccccCCcccccCcceEEeeCC
Q 029849 142 LFVDENACIGCRECVHHASNTFVMDEA 168 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~F~~e~~ 168 (186)
..+++.+|-||+.|...||+. .++..
T Consensus 94 ~~~~~~lC~GCgaC~~~CP~~-AI~~~ 119 (284)
T COG1149 94 PVLNPDLCEGCGACSIVCPEP-AIEEE 119 (284)
T ss_pred eecCcccccCcccceeeCCCc-ccccc
Confidence 346799999999999999998 66655
No 99
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=52.54 E-value=5.7 Score=28.37 Aligned_cols=26 Identities=31% Similarity=0.712 Sum_probs=19.2
Q ss_pred cccccccccccCCcccccCcc-eEEee
Q 029849 141 ALFVDENACIGCRECVHHASN-TFVMD 166 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~-~F~~e 166 (186)
.+.+++..|++|+.|...+|. .+.+.
T Consensus 10 ~v~id~~~Ci~C~~Cv~aCP~~ai~~~ 36 (103)
T PRK09626 10 PVWVDESRCKACDICVSVCPAGVLAMR 36 (103)
T ss_pred CeEECcccccCCcchhhhcChhhhccc
Confidence 345688889999999998887 44444
No 100
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=51.97 E-value=67 Score=22.13 Aligned_cols=52 Identities=19% Similarity=0.090 Sum_probs=35.3
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-cHHHH----HHHHHHHHHcC
Q 029849 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHT----LLLNEAYKVLM 101 (186)
Q Consensus 50 d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~-~~~~f----~~i~~AY~vL~ 101 (186)
|--.+.|+.|-++.+||..|-.+.++|..--..|.. +.+.| .+|..+-..|.
T Consensus 4 nI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL 60 (78)
T PF10041_consen 4 NIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLL 60 (78)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 444567888999999999999999999866655543 33444 34555544443
No 101
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.33 E-value=4.9 Score=26.75 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCcccc-------cccccccCCcccccCcceEEeeC
Q 029849 130 RSSWKGPPRPEALFV-------DENACIGCRECVHHASNTFVMDE 167 (186)
Q Consensus 130 ~~~~~~~~~~~~~~~-------~e~~~igC~~C~~~~~~~F~~e~ 167 (186)
...+..|+++++.|. ..+...-|..|++...+.|..++
T Consensus 18 ~~~y~yPCpCGDrf~It~edL~~ge~Va~CpsCSL~I~ViYd~ed 62 (67)
T KOG2923|consen 18 NQTYYYPCPCGDRFQITLEDLENGEDVARCPSCSLIIRVIYDKED 62 (67)
T ss_pred CCeEEcCCCCCCeeeecHHHHhCCCeeecCCCceEEEEEEeCHHH
Confidence 345678899998885 34446679999999999888765
No 102
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=47.71 E-value=13 Score=17.05 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHcC
Q 029849 89 HTLLLNEAYKVLM 101 (186)
Q Consensus 89 ~f~~i~~AY~vL~ 101 (186)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3667778887764
No 103
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=45.81 E-value=3.8 Score=29.40 Aligned_cols=31 Identities=35% Similarity=0.752 Sum_probs=21.2
Q ss_pred CcccccccccccCCcccccCcce-EEeeCCCC
Q 029849 140 EALFVDENACIGCRECVHHASNT-FVMDEATG 170 (186)
Q Consensus 140 ~~~~~~e~~~igC~~C~~~~~~~-F~~e~~~g 170 (186)
+.+.+|+..|+||+.|...+|.. -.++++.+
T Consensus 33 G~V~id~~~CigC~~C~~aCP~~ai~~~~~~~ 64 (98)
T PF13247_consen 33 GIVVIDEDKCIGCGYCVEACPYGAIRFDPDTG 64 (98)
T ss_dssp S-EEE-TTTCCTHHHHHHH-TTS-EEEETTTT
T ss_pred CeEEechhhccCchhhhhhhccCcceeecccc
Confidence 45678999999999999999974 44444444
No 104
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=44.63 E-value=17 Score=37.16 Aligned_cols=38 Identities=24% Similarity=0.462 Sum_probs=24.3
Q ss_pred CcccccccccccCCcccc-c-CcceEEeeCCCCceEEeee
Q 029849 140 EALFVDENACIGCRECVH-H-ASNTFVMDEATGCARVKVQ 177 (186)
Q Consensus 140 ~~~~~~e~~~igC~~C~~-~-~~~~F~~e~~~g~a~~~~~ 177 (186)
..+++++..|.||+.|+. . |+-..-++.+.|+-+.++|
T Consensus 650 ~r~~In~~vCeGCgdC~~~snC~ai~p~et~~grK~~Idq 689 (1186)
T PRK13029 650 RRVFINELVCEGCGDCSVQSNCLAVQPVETEFGRKRKINQ 689 (1186)
T ss_pred ccEEEcccccCCchhhhhccCCceeeeccccCCccEEECH
Confidence 367788888888888887 2 2333334555576566665
No 105
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=44.29 E-value=28 Score=19.21 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 029849 62 NGQEIKEAYRKLQKKYHP 79 (186)
Q Consensus 62 s~~eIk~ayr~~~~~~HP 79 (186)
..++.|.+.|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347889999999999994
No 106
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=44.27 E-value=9.4 Score=32.09 Aligned_cols=23 Identities=35% Similarity=0.845 Sum_probs=19.4
Q ss_pred CcccccccccccCCcccccCcce
Q 029849 140 EALFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 140 ~~~~~~e~~~igC~~C~~~~~~~ 162 (186)
..+.+++..|++|+.|...||..
T Consensus 41 ~~~~~~~~~C~~C~~C~~~Cp~~ 63 (295)
T TIGR02494 41 PELLFKENRCLGCGKCVEVCPAG 63 (295)
T ss_pred ceEEEccccCCCCchhhhhCccc
Confidence 45677999999999999999864
No 107
>COG2879 Uncharacterized small protein [Function unknown]
Probab=44.25 E-value=40 Score=22.40 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 029849 69 AYRKLQKKYHPDIAGQKGHEHTLLLNEA 96 (186)
Q Consensus 69 ayr~~~~~~HPDk~~~~~~~~f~~i~~A 96 (186)
.|-.-+++.|||+.+-.-.+.|.+-++|
T Consensus 27 nYVehmr~~hPd~p~mT~~EFfrec~da 54 (65)
T COG2879 27 NYVEHMRKKHPDKPPMTYEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHhCcCCCcccHHHHHHHHHHh
Confidence 4667788999999876666766654443
No 108
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=40.93 E-value=8.4 Score=26.45 Aligned_cols=22 Identities=27% Similarity=0.745 Sum_probs=18.6
Q ss_pred cccccccccccCCcccccCcce
Q 029849 141 ALFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~~ 162 (186)
.+.++...|++|+.|+..+|..
T Consensus 15 ~~~i~~~~Ci~C~~Cv~~CP~~ 36 (91)
T TIGR02936 15 VTSIDQEKCIGCGRCYKVCGRD 36 (91)
T ss_pred eEEECHhHCCCcchHHHHcChh
Confidence 4567999999999999999853
No 109
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=40.47 E-value=23 Score=25.16 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=19.9
Q ss_pred ccccccccCCcccccCcceEEeeCCCCceEEeeecC
Q 029849 144 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYG 179 (186)
Q Consensus 144 ~~e~~~igC~~C~~~~~~~F~~e~~~g~a~~~~~~~ 179 (186)
++...|++|+.|...+|..--...+.+...+..+.|
T Consensus 63 i~~~~C~~Cg~C~~~CP~~Ai~~~~~~~~~~~~~~~ 98 (101)
T TIGR00402 63 FDNAECDFCGKCAEACPTNAFHPRFPGDWLLRPQIS 98 (101)
T ss_pred ecCccCcCccChhhHCCccccCcCCCCCceEEeeec
Confidence 445566777777777766544334444445544443
No 110
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=40.36 E-value=7.6 Score=33.51 Aligned_cols=51 Identities=20% Similarity=0.501 Sum_probs=33.6
Q ss_pred CCCCCCCCC---Ccccccccccc-cCCcccccC---cceEEeeCCCCceEEeeecCCC
Q 029849 131 SSWKGPPRP---EALFVDENACI-GCRECVHHA---SNTFVMDEATGCARVKVQYGDS 181 (186)
Q Consensus 131 ~~~~~~~~~---~~~~~~e~~~i-gC~~C~~~~---~~~F~~e~~~g~a~~~~~~~~~ 181 (186)
..|.|.... ..+++....|. ||++|+... |-...-.+....|+.+.+||=+
T Consensus 100 ECWgG~d~~~ATATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasWgl~ 157 (360)
T KOG2672|consen 100 ECWGGGDKSTATATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASWGLD 157 (360)
T ss_pred hccCCCCCcceeEEEEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHHcCCC
Confidence 356655433 35666666664 899998754 4455555556789999999843
No 111
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=40.20 E-value=8.4 Score=29.02 Aligned_cols=19 Identities=37% Similarity=0.795 Sum_probs=10.7
Q ss_pred ccccccccCCcccccCcce
Q 029849 144 VDENACIGCRECVHHASNT 162 (186)
Q Consensus 144 ~~e~~~igC~~C~~~~~~~ 162 (186)
++...|++|+.|...||..
T Consensus 86 i~~~~C~~Cg~Cv~vCP~~ 104 (133)
T PRK09625 86 VDYSHCKGCGVCVEVCPTN 104 (133)
T ss_pred eCcCcCcChhHHHHHCCcC
Confidence 3444566666666666554
No 112
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=38.81 E-value=13 Score=24.52 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=25.3
Q ss_pred cccccccccccCCcccccCcceEEeeCC
Q 029849 141 ALFVDENACIGCRECVHHASNTFVMDEA 168 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~~F~~e~~ 168 (186)
.+.++...|++=+.|+.-+|.+|..+++
T Consensus 7 ~V~~d~~~C~hag~Cv~~~p~VFd~~~~ 34 (64)
T PF06902_consen 7 TVTWDRERCIHAGFCVRGAPEVFDQDDE 34 (64)
T ss_pred EEEECcCcccchhhhhcCCCCcccCCCC
Confidence 4566889999999999999999999988
No 113
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=38.40 E-value=24 Score=36.00 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=24.0
Q ss_pred CcccccccccccCCcccc-c-CcceEEeeCCCCceEEeee
Q 029849 140 EALFVDENACIGCRECVH-H-ASNTFVMDEATGCARVKVQ 177 (186)
Q Consensus 140 ~~~~~~e~~~igC~~C~~-~-~~~~F~~e~~~g~a~~~~~ 177 (186)
..+++++..|.||+.|+. . |+-.--++.+.|+-+.++|
T Consensus 636 ~r~~In~~vCegCgdC~~~s~C~ai~p~~t~~grK~~Idq 675 (1165)
T PRK09193 636 KRVFINEAVCEGCGDCSVKSNCLSVEPVETEFGRKRRIDQ 675 (1165)
T ss_pred ceEEEcccccCCchhhhhccCCcceeeccccCCccEEECH
Confidence 367788888888888887 2 2222224545566556665
No 114
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=37.46 E-value=25 Score=26.56 Aligned_cols=18 Identities=22% Similarity=0.776 Sum_probs=10.1
Q ss_pred ccccccccCCcccccCcc
Q 029849 144 VDENACIGCRECVHHASN 161 (186)
Q Consensus 144 ~~e~~~igC~~C~~~~~~ 161 (186)
++...|++|+.|...+|.
T Consensus 42 id~~~C~~Cg~Cv~~CP~ 59 (132)
T TIGR02060 42 IEPDMCWECYSCVKACPQ 59 (132)
T ss_pred cCchhCccHHHHHHhCCc
Confidence 445556666666665553
No 115
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=37.01 E-value=16 Score=28.98 Aligned_cols=25 Identities=28% Similarity=0.777 Sum_probs=17.3
Q ss_pred cccccccccCCcccccCcc-eEEeeC
Q 029849 143 FVDENACIGCRECVHHASN-TFVMDE 167 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~-~F~~e~ 167 (186)
.++...||||.-|...||. ...|+.
T Consensus 51 ~l~~~~CIgC~lCa~iCP~~aI~m~~ 76 (172)
T COG1143 51 VLDRDKCIGCGLCANICPANAITMET 76 (172)
T ss_pred eccccCCcchhHHHhhCCcCceEEEE
Confidence 3566669999999998886 334433
No 116
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=36.58 E-value=13 Score=27.13 Aligned_cols=22 Identities=32% Similarity=0.839 Sum_probs=18.0
Q ss_pred cccccccccccCCcccccCcce
Q 029849 141 ALFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~~ 162 (186)
.+.+++..|++|+.|...++..
T Consensus 36 ~i~i~~~~Ci~C~~C~~~CP~~ 57 (120)
T PRK08348 36 KILYDVDKCVGCRMCVTVCPAG 57 (120)
T ss_pred eEEECcccCcCcccHHHHCCcc
Confidence 4567888899999999998863
No 117
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=36.46 E-value=8.8 Score=18.04 Aligned_cols=13 Identities=38% Similarity=1.094 Sum_probs=10.0
Q ss_pred cccCCcccccCcc
Q 029849 149 CIGCRECVHHASN 161 (186)
Q Consensus 149 ~igC~~C~~~~~~ 161 (186)
|++|..|+..+|.
T Consensus 1 C~~C~~C~~~Cp~ 13 (15)
T PF12798_consen 1 CTGCGACVEVCPT 13 (15)
T ss_pred CCCchHHHHHhcC
Confidence 6778888887775
No 118
>COG1146 Ferredoxin [Energy production and conversion]
Probab=36.43 E-value=23 Score=23.09 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=21.5
Q ss_pred CCcccccccccccCCcccccCcce-EEeeC
Q 029849 139 PEALFVDENACIGCRECVHHASNT-FVMDE 167 (186)
Q Consensus 139 ~~~~~~~e~~~igC~~C~~~~~~~-F~~e~ 167 (186)
...+.++...|++|+.|...+|.. ..++.
T Consensus 33 ~~~~~~~~e~C~~C~~C~~~CP~~aI~~~~ 62 (68)
T COG1146 33 GKPVVARPEECIDCGLCELACPVGAIKVDI 62 (68)
T ss_pred cceeEeccccCccchhhhhhCCcceEEEec
Confidence 344557888899999999999987 44433
No 119
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=34.25 E-value=30 Score=35.37 Aligned_cols=17 Identities=41% Similarity=1.056 Sum_probs=13.0
Q ss_pred cccccccccccCCcccc
Q 029849 141 ALFVDENACIGCRECVH 157 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~ 157 (186)
.+++++..|.||+.|+.
T Consensus 623 ~~~In~~vCegCg~C~~ 639 (1159)
T PRK13030 623 RLFINEAVCEGCGDCGV 639 (1159)
T ss_pred eEEEcccccCCchhhhh
Confidence 56778888888888776
No 120
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=34.03 E-value=17 Score=34.46 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=20.8
Q ss_pred CcccccccccccCCcccccCcceEEeeCC
Q 029849 140 EALFVDENACIGCRECVHHASNTFVMDEA 168 (186)
Q Consensus 140 ~~~~~~e~~~igC~~C~~~~~~~F~~e~~ 168 (186)
+.+.+|...|+||+.|.+.||.-..-+.-
T Consensus 601 ~k~~id~~~C~GCg~C~~iCP~~a~~~~~ 629 (640)
T COG4231 601 KKARIDPSSCNGCGSCVEVCPSFAIKEGG 629 (640)
T ss_pred CceeecccccccchhhhhcCchhheeccc
Confidence 45566777899999999998875544433
No 121
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=33.27 E-value=19 Score=24.50 Aligned_cols=20 Identities=35% Similarity=0.866 Sum_probs=17.7
Q ss_pred cccccccccCCcccccCcce
Q 029849 143 FVDENACIGCRECVHHASNT 162 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~~ 162 (186)
.++...|++|+.|...+|..
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ 44 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTG 44 (99)
T ss_pred EeCccccCCCCCchhhCCHH
Confidence 56778899999999999986
No 122
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=33.24 E-value=12 Score=30.30 Aligned_cols=24 Identities=29% Similarity=0.793 Sum_probs=18.1
Q ss_pred CCcccccccccccCCcccccCcce
Q 029849 139 PEALFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 139 ~~~~~~~e~~~igC~~C~~~~~~~ 162 (186)
..-.+++|..|+||.+|...+|+.
T Consensus 107 ~~va~i~e~~ciGCtkCiqaCpvd 130 (198)
T COG2878 107 RMVALIDEANCIGCTKCIQACPVD 130 (198)
T ss_pred ceeeEecchhccccHHHHHhCChh
Confidence 345567888888888888888764
No 123
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=32.76 E-value=53 Score=23.57 Aligned_cols=24 Identities=17% Similarity=0.506 Sum_probs=17.9
Q ss_pred cccccccccCCcccccCcce-EEee
Q 029849 143 FVDENACIGCRECVHHASNT-FVMD 166 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~~-F~~e 166 (186)
.+++..|++|+.|...++.. +.++
T Consensus 47 ~~d~~~Ci~C~~C~~~CP~~ai~~~ 71 (105)
T PRK09624 47 EFNRDKCVRCYLCYIYCPEPAIYLD 71 (105)
T ss_pred EEChhHCcChhhHHhhCCHhhEEec
Confidence 46888899999999888864 4443
No 124
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=31.57 E-value=1.3e+02 Score=19.62 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHh
Q 029849 68 EAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (186)
Q Consensus 68 ~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~ 111 (186)
+..|...+.-||+.. ..+..+.|.+.|..|++..+...+|.
T Consensus 14 ~~~r~~~~~~~p~~~---~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKE---NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445666677799853 34677889999999998877665554
No 125
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=30.79 E-value=20 Score=31.41 Aligned_cols=21 Identities=19% Similarity=0.615 Sum_probs=17.2
Q ss_pred ccccccCCcccccCcceEEee
Q 029849 146 ENACIGCRECVHHASNTFVMD 166 (186)
Q Consensus 146 e~~~igC~~C~~~~~~~F~~e 166 (186)
...|+||+.|..+||....+.
T Consensus 300 ~~~CvgCGrC~~~CP~~idi~ 320 (334)
T TIGR02910 300 YHMCVGCGRCDDICPEYISFS 320 (334)
T ss_pred ccccCCcCchhhhCCCCCCHH
Confidence 456999999999999876543
No 126
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=29.88 E-value=18 Score=23.76 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=26.3
Q ss_pred CCCCCCCCCCcccc-------cccccccCCcccccCcceEEeeC
Q 029849 131 SSWKGPPRPEALFV-------DENACIGCRECVHHASNTFVMDE 167 (186)
Q Consensus 131 ~~~~~~~~~~~~~~-------~e~~~igC~~C~~~~~~~F~~e~ 167 (186)
..|..|+.+++.|- ..+..--|..|+++++++|.-|+
T Consensus 19 ~~ftyPCPCGDRFeIsLeDl~~GE~VArCPSCSLiv~vvyd~ed 62 (67)
T COG5216 19 KTFTYPCPCGDRFEISLEDLRNGEVVARCPSCSLIVCVVYDAED 62 (67)
T ss_pred ceEEecCCCCCEeEEEHHHhhCCceEEEcCCceEEEEEEecHHH
Confidence 45667777776653 34556679999999999987553
No 127
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=29.81 E-value=1.4e+02 Score=18.35 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHh
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~ 111 (186)
.+.++...+.-||+.. ..+....|.+.|..|++..+....+.
T Consensus 12 ~~~~~~~~~~~~~~~~---~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGLS---VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCCC---HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556777778888843 45677889999999997666555443
No 128
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=29.26 E-value=18 Score=22.15 Aligned_cols=22 Identities=27% Similarity=0.815 Sum_probs=14.1
Q ss_pred CcccccccccccCCcccccCcc
Q 029849 140 EALFVDENACIGCRECVHHASN 161 (186)
Q Consensus 140 ~~~~~~e~~~igC~~C~~~~~~ 161 (186)
..+.++...|++|+.|...+|.
T Consensus 29 ~~~~~~~~~C~~C~~C~~~CP~ 50 (52)
T PF12838_consen 29 PKMVIDPDKCTGCGACVEVCPT 50 (52)
T ss_dssp TTSEETGGG----SHHHHHTTT
T ss_pred eEEEEechhCcCcChhhhhCcC
Confidence 4446789999999999988875
No 129
>PRK06991 ferredoxin; Provisional
Probab=29.02 E-value=19 Score=30.60 Aligned_cols=20 Identities=35% Similarity=0.876 Sum_probs=15.7
Q ss_pred ccccccccccCCcccccCcc
Q 029849 142 LFVDENACIGCRECVHHASN 161 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~ 161 (186)
+.+++..|++|+.|+..||.
T Consensus 80 ~~id~~~CigCg~Cv~aCP~ 99 (270)
T PRK06991 80 AVIDEQLCIGCTLCMQACPV 99 (270)
T ss_pred eEEccccCCCCcHHHHhCCH
Confidence 34678888888888888874
No 130
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=28.53 E-value=22 Score=30.97 Aligned_cols=20 Identities=35% Similarity=0.968 Sum_probs=16.4
Q ss_pred ccccccccccCCcccccCcc
Q 029849 142 LFVDENACIGCRECVHHASN 161 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~ 161 (186)
+.+|...|++|+.|...|+.
T Consensus 196 l~id~~~Ci~Cg~Ci~~Cp~ 215 (317)
T COG2221 196 LKIDGSKCIGCGKCIRACPK 215 (317)
T ss_pred EEEehhhccCccHHhhhCCh
Confidence 45577889999999999984
No 131
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=28.07 E-value=52 Score=21.68 Aligned_cols=20 Identities=30% Similarity=0.748 Sum_probs=16.4
Q ss_pred cccccccccCCcccccCcce
Q 029849 143 FVDENACIGCRECVHHASNT 162 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~~ 162 (186)
.++...|++|..|...++..
T Consensus 21 ~i~~~~C~~C~~C~~~Cp~~ 40 (78)
T TIGR02179 21 VVDKEKCIKCKNCWLYCPEG 40 (78)
T ss_pred EEcCCcCcChhHHHhhcCcc
Confidence 56778899999999988865
No 132
>PLN00071 photosystem I subunit VII; Provisional
Probab=27.55 E-value=28 Score=23.32 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=16.9
Q ss_pred ccccccccCCcccccCcce-EEeeC
Q 029849 144 VDENACIGCRECVHHASNT-FVMDE 167 (186)
Q Consensus 144 ~~e~~~igC~~C~~~~~~~-F~~e~ 167 (186)
++...|++|+.|...+|.. +.+++
T Consensus 6 ~~~~~C~~C~~C~~~CP~~~i~~~~ 30 (81)
T PLN00071 6 KIYDTCIGCTQCVRACPTDVLEMIP 30 (81)
T ss_pred EcCCcCcChhHHHHHCCccceeeec
Confidence 4556788999998888843 55543
No 133
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=27.54 E-value=16 Score=24.13 Aligned_cols=30 Identities=37% Similarity=0.727 Sum_probs=20.1
Q ss_pred ccccccccCCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 029849 48 KKNYYELLGVSVEANGQEI-KEAYRKLQKKYHPDI 81 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eI-k~ayr~~~~~~HPDk 81 (186)
..+++++||+++ +++ ...........|||-
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 357889999954 666 556666777899984
No 134
>PRK06273 ferredoxin; Provisional
Probab=27.20 E-value=19 Score=28.31 Aligned_cols=20 Identities=35% Similarity=0.717 Sum_probs=17.7
Q ss_pred cccccccccCCcccccCcce
Q 029849 143 FVDENACIGCRECVHHASNT 162 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~~ 162 (186)
.+++..|++|+.|...||..
T Consensus 45 ~id~~~CigCg~C~~aCP~~ 64 (165)
T PRK06273 45 KVFEELCIGCGGCANVCPTK 64 (165)
T ss_pred eECchhCcChhHHHHhcCcc
Confidence 57888999999999999964
No 135
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=26.87 E-value=1.3e+02 Score=21.21 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCCCCC-CHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHhh
Q 029849 56 GVSVEA-NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDAS 112 (186)
Q Consensus 56 gv~~~a-s~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~ 112 (186)
|++|+. ...+|-+.++.++..+++. ..+.+..|.+.| +.||.-+..||..
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~-----~~~~~~~l~~~y--~~~~~~~~~~~~~ 101 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG-----DPELLRGLAQMY--VEDPRFAAMYDKK 101 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS--------HHHHHHHHHHT--TSTHHHHHHHG-G
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHH--HcCHHHHhhcccc
Confidence 455654 3445667777777777662 346777888888 7889989988843
No 136
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=26.86 E-value=93 Score=27.32 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHh
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~ 111 (186)
.+..|+.+.+-.||-. +.|..++|-+-|..|++.+||-.+|.
T Consensus 74 Sq~~RRkma~qnP~mH---NSEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 74 SQGQRRKLAKQNPKMH---NSEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred hHHHHHHHHHhCcchh---hHHHHHHHHHHHhhcCHhhhccHHHH
Confidence 4666777777778864 56889999999999999999998884
No 137
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=26.83 E-value=41 Score=27.56 Aligned_cols=22 Identities=27% Similarity=0.673 Sum_probs=18.8
Q ss_pred CcccccccccccCCcccccCcc
Q 029849 140 EALFVDENACIGCRECVHHASN 161 (186)
Q Consensus 140 ~~~~~~e~~~igC~~C~~~~~~ 161 (186)
..+.+|+..|++|+.|...++.
T Consensus 139 ~~i~~d~~kCi~Cg~Cv~aC~~ 160 (234)
T PRK07569 139 PRFGIDHNRCVLCTRCVRVCDE 160 (234)
T ss_pred CcEEeehhhCcCccHHHHHHHH
Confidence 4556899999999999999984
No 138
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=26.82 E-value=56 Score=28.69 Aligned_cols=32 Identities=19% Similarity=0.495 Sum_probs=22.7
Q ss_pred cccccCCcccccCcc--eEEeeCC----CCc-eEEeeec
Q 029849 147 NACIGCRECVHHASN--TFVMDEA----TGC-ARVKVQY 178 (186)
Q Consensus 147 ~~~igC~~C~~~~~~--~F~~e~~----~g~-a~~~~~~ 178 (186)
..||+|+.|...||. .|.|.|. +|. ++.+..|
T Consensus 220 ~rCi~C~~C~~~CPtC~Cf~i~D~~~~~~g~~geR~R~W 258 (334)
T TIGR02910 220 SRCIACGRCNTVCPTCTCFSMQDVFYKDNPKAGERRRVW 258 (334)
T ss_pred hhCCcCccccccCCceEeeEEEEecccCCCCceEEEEEe
Confidence 359999999999987 5677766 233 4555555
No 139
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=26.80 E-value=29 Score=27.53 Aligned_cols=22 Identities=23% Similarity=0.620 Sum_probs=18.6
Q ss_pred cccccccccccCCcccccCcce
Q 029849 141 ALFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~~ 162 (186)
.+.++...|++|+.|...||..
T Consensus 56 ~i~~~~~kCi~Cg~C~~aCP~~ 77 (183)
T TIGR00403 56 RIHFEFDKCIACEVCVRVCPIN 77 (183)
T ss_pred eEEeCcccCcCcCChhhhCCCC
Confidence 4556888999999999999975
No 140
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=26.61 E-value=38 Score=24.20 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=19.5
Q ss_pred ccccccccccCCcccccCcce-EEeeC
Q 029849 142 LFVDENACIGCRECVHHASNT-FVMDE 167 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~-F~~e~ 167 (186)
..++...|++|+.|...+|.. +.+++
T Consensus 46 p~i~~~~Ci~C~~C~~~CP~~ai~~~~ 72 (105)
T PRK09623 46 PVVDESKCVKCYICWKFCPEPAIYIKE 72 (105)
T ss_pred EEECcccCccccchhhhCCHhheEecC
Confidence 457888899999999999774 44443
No 141
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=26.26 E-value=26 Score=30.70 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=18.3
Q ss_pred cccccccccccCCcccccCcc
Q 029849 141 ALFVDENACIGCRECVHHASN 161 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~ 161 (186)
.+.+|...|++|+.|...||.
T Consensus 208 ~~~id~~~Ci~Cg~Ci~~CP~ 228 (341)
T TIGR02066 208 SLEVDVEKCIYCGNCYTMCPA 228 (341)
T ss_pred ceeeccccCCcCCchHHhCch
Confidence 356788999999999999986
No 142
>PF04328 DUF466: Protein of unknown function (DUF466); InterPro: IPR007423 This is a small bacterial protein of unknown function.
Probab=25.85 E-value=1.5e+02 Score=19.57 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 029849 68 EAYRKLQKKYHPDIAGQKGHEHTLLLNE 95 (186)
Q Consensus 68 ~ayr~~~~~~HPDk~~~~~~~~f~~i~~ 95 (186)
..|-.-....|||+.+-...+.|..-++
T Consensus 26 e~Yv~H~~~~HP~~p~ms~~eF~r~r~~ 53 (65)
T PF04328_consen 26 ERYVEHMRRHHPDEPPMSEREFFRERQD 53 (65)
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHH
Confidence 4566677889999976655566654443
No 143
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=25.53 E-value=25 Score=32.44 Aligned_cols=22 Identities=36% Similarity=0.819 Sum_probs=18.5
Q ss_pred ccccccccccCCcccccCcceE
Q 029849 142 LFVDENACIGCRECVHHASNTF 163 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~F 163 (186)
-++-|.+||||+-|+..||+.-
T Consensus 45 ~~ise~lCigcgicvkkcpf~a 66 (592)
T KOG0063|consen 45 AFISEELCIGCGICVKKCPFEA 66 (592)
T ss_pred chhhHhhhccccceeeccCcce
Confidence 4567899999999999998753
No 144
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=25.39 E-value=23 Score=30.91 Aligned_cols=26 Identities=23% Similarity=0.669 Sum_probs=20.1
Q ss_pred CCCcccccccccccCCcccccCcceE
Q 029849 138 RPEALFVDENACIGCRECVHHASNTF 163 (186)
Q Consensus 138 ~~~~~~~~e~~~igC~~C~~~~~~~F 163 (186)
..-.+.+|-..||||+.|...|...-
T Consensus 36 ~~~~~liD~tkCiGC~aC~~AC~~~n 61 (328)
T PRK10882 36 GALGMLYDSTLCVGCQACVTKCQEIN 61 (328)
T ss_pred ccEEEEEeHhhCCCChHHHHHhcccc
Confidence 34567789999999999997665444
No 145
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=24.73 E-value=35 Score=22.85 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=17.5
Q ss_pred cccccccccCCcccccCcce-EEeeC
Q 029849 143 FVDENACIGCRECVHHASNT-FVMDE 167 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~~-F~~e~ 167 (186)
.++...|++|+.|...+|.. +.+++
T Consensus 4 ~~~~~~Ci~C~~Cv~~CP~~~i~~~~ 29 (80)
T TIGR03048 4 VKIYDTCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_pred eecCCcCcCcchHHHHCCccceeeec
Confidence 34566788999999988853 55543
No 146
>PRK02651 photosystem I subunit VII; Provisional
Probab=24.69 E-value=47 Score=22.14 Aligned_cols=19 Identities=21% Similarity=0.774 Sum_probs=15.9
Q ss_pred ccccccccCCcccccCcce
Q 029849 144 VDENACIGCRECVHHASNT 162 (186)
Q Consensus 144 ~~e~~~igC~~C~~~~~~~ 162 (186)
++...|++|+.|...+|..
T Consensus 43 ~~~~~C~~Cg~C~~~CP~~ 61 (81)
T PRK02651 43 PRTEDCVGCKRCETACPTD 61 (81)
T ss_pred CCCCcCCChhhhhhhcCCC
Confidence 4667899999999999963
No 147
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=24.15 E-value=53 Score=29.24 Aligned_cols=19 Identities=32% Similarity=0.901 Sum_probs=13.0
Q ss_pred cccccccccCCcccccCcc
Q 029849 143 FVDENACIGCRECVHHASN 161 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~ 161 (186)
.+++..|++|+.|...|+.
T Consensus 338 ~~~~~~C~~C~~C~~~Cp~ 356 (420)
T PRK08318 338 RIDQDKCIGCGRCYIACED 356 (420)
T ss_pred EECHHHCCCCCcccccCCC
Confidence 3566677777777777764
No 148
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=24.08 E-value=29 Score=28.26 Aligned_cols=19 Identities=37% Similarity=0.807 Sum_probs=16.6
Q ss_pred cccccccccCCcccccCcc
Q 029849 143 FVDENACIGCRECVHHASN 161 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~ 161 (186)
.|+...|+||+.|...+|.
T Consensus 171 ~Vd~~~C~gCG~C~~~CP~ 189 (213)
T TIGR00397 171 TVDSAKCTGCGTCEKHCVL 189 (213)
T ss_pred EEecccCCCcchhhHhCCC
Confidence 4678889999999999984
No 149
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=23.76 E-value=2.2e+02 Score=18.67 Aligned_cols=41 Identities=7% Similarity=0.083 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHH
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD 110 (186)
.+.++..++.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 13 ~~~~r~~~~~~~p~~~---~~eisk~~g~~Wk~ls~eeK~~y~~ 53 (77)
T cd01389 13 RQDKHAQLKTENPGLT---NNEISRIIGRMWRSESPEVKAYYKE 53 (77)
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 4566777788899863 4567788999999999766655444
No 150
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=23.55 E-value=31 Score=26.64 Aligned_cols=15 Identities=27% Similarity=0.800 Sum_probs=13.7
Q ss_pred ccccCCcccccCcce
Q 029849 148 ACIGCRECVHHASNT 162 (186)
Q Consensus 148 ~~igC~~C~~~~~~~ 162 (186)
.|++|..|...||..
T Consensus 59 ~Ci~C~~C~~~CP~~ 73 (164)
T PRK05888 59 RCIACKLCAAICPAD 73 (164)
T ss_pred cCCcccChHHHcCcc
Confidence 899999999999964
No 151
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=23.22 E-value=36 Score=29.98 Aligned_cols=14 Identities=29% Similarity=0.990 Sum_probs=0.0
Q ss_pred cccCCcccccCcce
Q 029849 149 CIGCRECVHHASNT 162 (186)
Q Consensus 149 ~igC~~C~~~~~~~ 162 (186)
|+||+.|..+||..
T Consensus 309 CvgCGrC~~~CP~~ 322 (344)
T PRK15055 309 CVGCGRCDDRCPEY 322 (344)
T ss_pred CcCcCccccccCCC
No 152
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=23.15 E-value=1.4e+02 Score=18.63 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=19.3
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHH
Q 029849 52 YELLGVSVEANGQEIKEAYRKLQK 75 (186)
Q Consensus 52 Y~iLgv~~~as~~eIk~ayr~~~~ 75 (186)
+.+=|+.|..+++|.|+.-|+-.+
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 456789999999999998876543
No 153
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=23.13 E-value=23 Score=30.29 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=22.9
Q ss_pred cccccccccccCCcccccCcce-EEeeCCCC
Q 029849 141 ALFVDENACIGCRECVHHASNT-FVMDEATG 170 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~~-F~~e~~~g 170 (186)
.+.+|+..|+||+.|...||.. ..+++..+
T Consensus 118 ~V~id~dkCigC~~Cv~aCP~~a~~~~~~~~ 148 (283)
T TIGR01582 118 IVDFDHSKCIGCGYCIVGCPFNIPRYDKVDN 148 (283)
T ss_pred cEEEeHHHCCcchHHHhhCCCCCcEEcCCCC
Confidence 4567889999999999999874 55555433
No 154
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=22.72 E-value=43 Score=26.74 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=20.9
Q ss_pred cccccccccCCcccccCcceEEeeCC
Q 029849 143 FVDENACIGCRECVHHASNTFVMDEA 168 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~~F~~e~~ 168 (186)
.+|...||=|+.|.+.||+.--++.+
T Consensus 146 dIDmtkCIyCG~CqEaCPvdaivegp 171 (212)
T KOG3256|consen 146 DIDMTKCIYCGFCQEACPVDAIVEGP 171 (212)
T ss_pred cccceeeeeecchhhhCCccceeccC
Confidence 35778899999999999986666555
No 155
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=22.57 E-value=22 Score=32.68 Aligned_cols=19 Identities=26% Similarity=0.758 Sum_probs=16.8
Q ss_pred cccccccccCCcccccCcc
Q 029849 143 FVDENACIGCRECVHHASN 161 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~ 161 (186)
.+|...|+||+.|...||.
T Consensus 210 ~ID~dkCiGCg~CV~ACPy 228 (492)
T TIGR01660 210 LIDQDKCRGWRMCISGCPY 228 (492)
T ss_pred EEehhhccChHHHHHhCCC
Confidence 4688889999999999995
No 156
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=22.50 E-value=25 Score=29.23 Aligned_cols=25 Identities=28% Similarity=0.672 Sum_probs=20.5
Q ss_pred cccccccccccCCcccccCcceEEe
Q 029849 141 ALFVDENACIGCRECVHHASNTFVM 165 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~~F~~ 165 (186)
.+.+|...|+||+.|...|...-.+
T Consensus 45 ~~~iD~~kCiGC~~C~~AC~~~n~~ 69 (244)
T PRK14993 45 AMLIDLRRCIGCQSCTVSCTIENQT 69 (244)
T ss_pred EEEEEHHHCCCchHHHHHhhhhccC
Confidence 5678999999999999998875443
No 157
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=22.49 E-value=56 Score=29.11 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=24.7
Q ss_pred cccccccccCCcccccCcc--eEEeeCCCCceEEeeecCC
Q 029849 143 FVDENACIGCRECVHHASN--TFVMDEATGCARVKVQYGD 180 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~--~F~~e~~~g~a~~~~~~~~ 180 (186)
.++...|++|+.|...||. .+.++.... .+.+.-|..
T Consensus 373 ~i~~~~C~~Cg~C~~~CP~~~Ai~~~~~~~-~~~~~~~~~ 411 (420)
T PRK08318 373 EVIEEECVGCNLCAHVCPVEGCITMGEVKF-GKPYANWTT 411 (420)
T ss_pred EechhhCcccchHHhhCCCCCCEEEeccCC-CcccccccC
Confidence 4677889999999999997 455554422 234555543
No 158
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=22.24 E-value=37 Score=27.16 Aligned_cols=21 Identities=38% Similarity=1.070 Sum_probs=17.4
Q ss_pred cccccccccccCCcccccCcc
Q 029849 141 ALFVDENACIGCRECVHHASN 161 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~ 161 (186)
...++...|++|+.|...++.
T Consensus 108 ~~~id~~~Ci~Cg~Cv~aCp~ 128 (191)
T PRK05113 108 VAFIDEDNCIGCTKCIQACPV 128 (191)
T ss_pred eeEEeCCcCCCCChhhhhCCH
Confidence 456788899999999999974
No 159
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=21.99 E-value=48 Score=28.41 Aligned_cols=23 Identities=35% Similarity=0.735 Sum_probs=16.0
Q ss_pred ccccccccccCCcccccCcceEE
Q 029849 142 LFVDENACIGCRECVHHASNTFV 164 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~F~ 164 (186)
+.++...|++|+.|...||..--
T Consensus 196 ~~id~~~C~~Cg~Cv~~CP~~Al 218 (314)
T TIGR02912 196 VVRDHSKCIGCGECVLKCPTGAW 218 (314)
T ss_pred EEeCCCcCcCcchhhhhCCHhhc
Confidence 34567778888888888876533
No 160
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=21.76 E-value=2.1e+02 Score=17.66 Aligned_cols=39 Identities=31% Similarity=0.308 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHh
Q 029849 70 YRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (186)
Q Consensus 70 yr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~ 111 (186)
.|...+.-||+.. ..+..+.|.+.|..|++..+....+.
T Consensus 15 ~r~~~~~~~p~~~---~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 15 QRPKLKKENPDAS---VTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHCcCCC---HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4555566788843 45777889999999997766655443
No 161
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=21.69 E-value=39 Score=26.31 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=17.0
Q ss_pred ccccccccccCCcccccCcce
Q 029849 142 LFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~ 162 (186)
+.++...|++|+.|...||..
T Consensus 54 i~~~~~~Ci~Cg~C~~aCP~~ 74 (167)
T CHL00014 54 IHFEFDKCIACEVCVRVCPID 74 (167)
T ss_pred EEeccccCCCcCcHHHhCCCC
Confidence 446778899999999999865
No 162
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=21.21 E-value=1.1e+02 Score=21.93 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=27.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIA 82 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~ 82 (186)
...+|.||.++...+..+|-+.--..+++.+||-.
T Consensus 10 ~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 10 PDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 44689999999999988876665555677777765
No 163
>CHL00065 psaC photosystem I subunit VII
Probab=21.13 E-value=31 Score=23.19 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=18.0
Q ss_pred ccccccccCCcccccCcc-eEEeeC
Q 029849 144 VDENACIGCRECVHHASN-TFVMDE 167 (186)
Q Consensus 144 ~~e~~~igC~~C~~~~~~-~F~~e~ 167 (186)
.+...|++|+.|...+|. .+.+++
T Consensus 6 ~~~~~Ci~Cg~C~~~CP~~~i~~~~ 30 (81)
T CHL00065 6 KIYDTCIGCTQCVRACPTDVLEMIP 30 (81)
T ss_pred CccccCCChhHHHHHCCccchhhee
Confidence 456689999999999994 345543
No 164
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=20.78 E-value=97 Score=26.86 Aligned_cols=60 Identities=25% Similarity=0.165 Sum_probs=40.6
Q ss_pred ccccccccCCCC-CCCHHHHHHHHHHHHHHh-------CCCCCC-----CccHHHHHHHHHHHHHcCCchhhH
Q 029849 48 KKNYYELLGVSV-EANGQEIKEAYRKLQKKY-------HPDIAG-----QKGHEHTLLLNEAYKVLMRGDLRK 107 (186)
Q Consensus 48 ~~d~Y~iLgv~~-~as~~eIk~ayr~~~~~~-------HPDk~~-----~~~~~~f~~i~~AY~vL~d~~~R~ 107 (186)
+.++++-|||+. ..+.+|+++-.+.++.+. ++|.+. ..-.+.++++.+||+.|.+.....
T Consensus 81 R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~~p~l 153 (318)
T PF12725_consen 81 RPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAERYPFL 153 (318)
T ss_pred CcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCcc
Confidence 557888999988 689999887776555433 333321 123677889999999998654333
No 165
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=20.36 E-value=77 Score=30.26 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=23.5
Q ss_pred cccccccccccCCccc-ccCcceEEeeCCCCceEEeee
Q 029849 141 ALFVDENACIGCRECV-HHASNTFVMDEATGCARVKVQ 177 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~-~~~~~~F~~e~~~g~a~~~~~ 177 (186)
..+||+..|.||..|. ...+-....++.+ +-..++|
T Consensus 571 ~~~Vd~~~CtGC~~C~~~~~Cpsi~~~~~~-~k~~id~ 607 (640)
T COG4231 571 KYFVDEEKCTGCGDCIVLSGCPSIEPDPTF-KKARIDP 607 (640)
T ss_pred CceechhhcCCcHHHHhhcCCceEeecCCC-Cceeecc
Confidence 4789999999999999 4444444444433 3344443
Done!