Query 029849
Match_columns 186
No_of_seqs 232 out of 1822
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:56:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6l_A DNAJ homolog subfamily 99.9 1.3E-23 4.6E-28 162.4 3.8 120 45-164 6-148 (155)
2 2yua_A Williams-beuren syndrom 99.9 1.2E-22 4.1E-27 146.2 7.7 75 43-117 11-87 (99)
3 1wjz_A 1700030A21RIK protein; 99.9 1.6E-22 5.5E-27 143.8 6.0 73 44-116 11-91 (94)
4 2dn9_A DNAJ homolog subfamily 99.9 3.3E-22 1.1E-26 138.0 7.3 71 45-115 3-75 (79)
5 2ctr_A DNAJ homolog subfamily 99.9 4.7E-22 1.6E-26 140.1 7.6 72 45-116 3-75 (88)
6 2ej7_A HCG3 gene; HCG3 protein 99.9 5.3E-22 1.8E-26 137.8 7.7 70 46-115 6-78 (82)
7 1hdj_A Human HSP40, HDJ-1; mol 99.9 8E-22 2.7E-26 135.5 8.1 68 48-115 2-70 (77)
8 2och_A Hypothetical protein DN 99.9 5.6E-22 1.9E-26 135.0 7.3 68 45-113 4-71 (73)
9 2ctp_A DNAJ homolog subfamily 99.9 4.4E-22 1.5E-26 137.1 6.8 71 45-115 3-74 (78)
10 2dmx_A DNAJ homolog subfamily 99.9 7.4E-22 2.5E-26 140.1 7.6 70 47-116 7-79 (92)
11 2cug_A Mkiaa0962 protein; DNAJ 99.9 1.2E-21 4E-26 138.1 8.0 71 45-115 13-84 (88)
12 2o37_A Protein SIS1; HSP40, J- 99.9 8.8E-22 3E-26 139.9 7.2 70 45-115 4-73 (92)
13 2lgw_A DNAJ homolog subfamily 99.8 1.9E-21 6.6E-26 140.0 6.2 68 49-116 2-72 (99)
14 2ctw_A DNAJ homolog subfamily 99.8 7.1E-21 2.4E-25 139.2 7.8 70 45-114 13-84 (109)
15 2ctq_A DNAJ homolog subfamily 99.8 4.6E-21 1.6E-25 140.8 6.6 71 45-115 16-88 (112)
16 1bq0_A DNAJ, HSP40; chaperone, 99.8 5.5E-21 1.9E-25 138.4 4.3 69 48-116 2-72 (103)
17 3bvo_A CO-chaperone protein HS 99.8 2.7E-20 9.3E-25 150.4 7.9 85 30-114 24-117 (207)
18 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 3.8E-20 1.3E-24 135.2 5.2 71 45-115 11-87 (109)
19 2ys8_A RAB-related GTP-binding 99.8 1.8E-19 6.2E-24 127.4 4.4 62 46-107 24-86 (90)
20 3apq_A DNAJ homolog subfamily 99.8 5.8E-19 2E-23 140.7 7.5 68 49-116 2-71 (210)
21 3hho_A CO-chaperone protein HS 99.7 9.3E-19 3.2E-23 137.8 5.9 67 48-114 3-78 (174)
22 1gh6_A Large T antigen; tumor 99.7 6.7E-20 2.3E-24 135.2 -1.1 64 48-113 7-72 (114)
23 2pf4_E Small T antigen; PP2A, 99.7 6.1E-20 2.1E-24 144.4 -1.9 66 47-114 9-76 (174)
24 1fpo_A HSC20, chaperone protei 99.7 1.7E-18 5.6E-23 136.1 5.0 65 50-114 2-75 (171)
25 3lz8_A Putative chaperone DNAJ 99.7 2.2E-19 7.7E-24 154.1 0.0 72 43-114 22-94 (329)
26 1iur_A KIAA0730 protein; DNAJ 99.7 1E-18 3.4E-23 123.3 2.9 65 42-106 9-76 (88)
27 1faf_A Large T antigen; J doma 99.7 2E-18 6.7E-23 119.4 2.4 61 47-109 9-71 (79)
28 3uo3_A J-type CO-chaperone JAC 99.7 6.2E-18 2.1E-22 133.9 4.1 67 46-113 8-81 (181)
29 2guz_A Mitochondrial import in 99.7 1.2E-17 4.2E-22 113.1 3.2 62 43-106 8-70 (71)
30 1n4c_A Auxilin; four helix bun 99.7 7.4E-18 2.5E-22 133.3 1.7 61 49-109 117-182 (182)
31 2qwo_B Putative tyrosine-prote 99.7 2E-17 6.7E-22 117.5 2.3 54 49-102 33-91 (92)
32 3ag7_A Putative uncharacterize 99.6 2.5E-17 8.4E-22 119.9 2.1 57 47-104 39-104 (106)
33 3apo_A DNAJ homolog subfamily 99.6 1.2E-16 4E-21 149.2 0.6 71 45-115 17-89 (780)
34 2y4t_A DNAJ homolog subfamily 99.1 2.5E-11 8.7E-16 102.9 4.8 64 48-111 381-449 (450)
35 2guz_B Mitochondrial import in 99.1 1E-10 3.5E-15 77.6 3.9 53 48-102 3-58 (65)
36 1dax_A Ferredoxin I; electron 93.8 0.026 8.8E-07 35.3 1.7 35 142-176 4-38 (64)
37 1iqz_A Ferredoxin; iron-sulfer 93.6 0.025 8.5E-07 37.4 1.6 33 142-175 4-36 (81)
38 1dwl_A Ferredoxin I; electron 92.4 0.095 3.2E-06 31.7 2.9 33 142-174 2-34 (59)
39 1sj1_A Ferredoxin; thermostabi 91.3 0.074 2.5E-06 33.0 1.4 34 142-176 4-37 (66)
40 2pzi_A Probable serine/threoni 90.6 0.17 5.9E-06 46.1 3.7 47 47-99 627-675 (681)
41 1f2g_A Ferredoxin II; electron 88.9 0.17 5.8E-06 30.7 1.6 33 142-176 2-34 (58)
42 1rof_A Ferredoxin; electron tr 87.5 0.18 6.1E-06 30.5 1.0 27 142-168 3-29 (60)
43 1yop_A KTI11P; zinc finger, me 81.7 0.1 3.5E-06 35.6 -2.2 37 132-168 21-64 (83)
44 2jr7_A DPH3 homolog; DESR1, CS 81.3 0.11 3.6E-06 36.0 -2.3 38 131-168 20-64 (89)
45 1wge_A Hypothetical protein 26 81.1 0.16 5.5E-06 34.6 -1.4 38 131-168 27-71 (83)
46 1xer_A Ferredoxin; electron tr 71.9 0.93 3.2E-05 30.7 0.4 28 141-168 37-65 (103)
47 1jb0_C Photosystem I iron-sulf 65.6 1.4 4.7E-05 28.1 0.2 25 143-167 4-29 (80)
48 1rgv_A Ferredoxin; electron tr 63.9 3.9 0.00013 26.2 2.2 24 144-167 3-27 (80)
49 3j16_B RLI1P; ribosome recycli 63.3 1.5 5.2E-05 39.9 0.0 22 141-162 47-68 (608)
50 2fgo_A Ferredoxin; allochromat 63.0 4.5 0.00016 26.0 2.4 24 144-167 3-27 (82)
51 3eun_A Ferredoxin; electron tr 61.8 4.4 0.00015 26.2 2.1 24 143-166 2-26 (82)
52 2zvs_A Uncharacterized ferredo 58.8 4.9 0.00017 26.1 2.0 17 144-160 3-19 (85)
53 7fd1_A FD1, protein (7-Fe ferr 42.4 10 0.00034 25.6 1.5 27 142-168 32-59 (106)
54 3i9v_9 NADH-quinone oxidoreduc 40.8 5.8 0.0002 29.3 0.0 17 145-161 49-65 (182)
55 1gte_A Dihydropyrimidine dehyd 37.9 9.6 0.00033 36.6 1.0 30 141-170 945-978 (1025)
56 2v2k_A Ferredoxin; iron, trans 34.0 15 0.00051 24.6 1.3 25 142-166 32-57 (105)
57 4a3n_A Transcription factor SO 33.9 74 0.0025 19.4 4.6 41 67-110 14-54 (71)
58 3or1_B Sulfite reductase beta; 33.8 8.6 0.00029 32.9 -0.0 21 141-161 250-270 (386)
59 3mm5_A Sulfite reductase, diss 33.3 12 0.00041 32.5 0.8 29 140-168 277-305 (418)
60 1hfe_L Protein (Fe-only hydrog 31.0 10 0.00035 32.7 -0.0 22 141-162 27-48 (421)
61 1ti6_B Pyrogallol hydroxytrans 30.5 17 0.00057 29.6 1.2 28 141-168 91-119 (274)
62 2vpz_B NRFC protein; oxidoredu 30.5 14 0.00048 28.3 0.7 29 141-169 82-111 (195)
63 3mm5_B Sulfite reductase, diss 30.1 11 0.00036 32.0 -0.1 23 140-162 232-254 (366)
64 1bc6_A 7-Fe ferredoxin; electr 30.0 21 0.00071 22.4 1.4 24 143-166 2-28 (77)
65 2fdn_A Ferredoxin; electron tr 30.0 21 0.0007 20.7 1.3 17 146-162 5-21 (55)
66 1qqr_A Streptokinase domain B; 30.0 29 0.001 25.5 2.3 32 50-81 33-64 (138)
67 3nm9_A HMG-D, high mobility gr 29.5 1E+02 0.0035 19.1 5.2 39 67-111 15-53 (73)
68 3c8y_A Iron hydrogenase 1; dit 29.1 12 0.00042 33.5 0.2 29 140-168 138-171 (574)
69 2crj_A SWI/SNF-related matrix- 28.8 1.2E+02 0.0042 19.7 5.3 41 67-110 19-59 (92)
70 1kqf_B FDH-N beta S, formate d 28.4 19 0.00066 29.4 1.2 30 141-170 125-155 (294)
71 1i11_A Transcription factor SO 28.2 1E+02 0.0035 19.5 4.7 42 67-111 16-57 (81)
72 3bk7_A ABC transporter ATP-bin 27.9 13 0.00044 33.7 0.0 21 142-162 62-82 (607)
73 1h98_A Ferredoxin; electron tr 27.1 18 0.00063 22.7 0.7 23 144-166 3-28 (78)
74 3f27_D Transcription factor SO 27.0 1.2E+02 0.0041 19.1 4.9 41 67-110 18-58 (83)
75 2d7l_A WD repeat and HMG-box D 25.7 72 0.0025 20.7 3.5 43 67-111 17-59 (81)
76 1hry_A Human SRY; DNA, DNA-bin 25.1 1.2E+02 0.0041 18.8 4.5 41 67-110 16-56 (76)
77 1wgf_A Upstream binding factor 24.6 1E+02 0.0035 20.1 4.2 42 67-111 32-73 (90)
78 3tmm_A Transcription factor A, 23.4 77 0.0026 24.9 3.9 41 67-110 53-93 (238)
79 1wz6_A HMG-box transcription f 22.8 1.4E+02 0.0048 18.9 4.5 41 67-110 19-59 (82)
80 1uzc_A Hypothetical protein FL 22.7 99 0.0034 19.8 3.7 53 60-113 11-66 (71)
81 1jnr_B Adenylylsulfate reducta 22.1 19 0.00064 26.3 -0.0 21 142-162 40-60 (150)
82 2c42_A Pyruvate-ferredoxin oxi 21.9 19 0.00066 35.5 0.0 20 143-162 682-701 (1231)
83 3i9v_3 NADH-quinone oxidoreduc 21.8 23 0.00077 33.0 0.5 21 141-161 173-193 (783)
84 3u2b_C Transcription factor SO 21.7 1.5E+02 0.0053 18.4 4.6 41 67-110 14-54 (79)
85 2cs1_A PMS1 protein homolog 1; 21.5 1.2E+02 0.0041 19.8 4.1 41 67-110 19-59 (92)
86 2c42_A Pyruvate-ferredoxin oxi 21.2 20 0.00069 35.4 -0.0 18 144-161 739-756 (1231)
87 2e6o_A HMG box-containing prot 21.0 1.5E+02 0.005 19.1 4.4 41 67-110 29-69 (87)
88 2lxi_A RNA-binding protein 10; 20.8 72 0.0025 20.5 2.8 21 54-74 6-26 (91)
89 1hme_A High mobility group pro 20.6 1.6E+02 0.0055 18.2 5.5 41 67-110 18-58 (77)
90 1cf7_A Protein (transcription 20.2 63 0.0022 21.0 2.3 45 60-113 9-53 (76)
No 1
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.88 E-value=1.3e-23 Score=162.37 Aligned_cols=120 Identities=23% Similarity=0.337 Sum_probs=89.6
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------cHHHHHHHHHHHHHcCCchhhHHHHhhcccc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--------GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~--------~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (186)
.+...|||+||||+++++.++||+|||++++++|||+++.. +.+.|++|++||++|+||.+|+.||..+...
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~ 85 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCED 85 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHH
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchh
Confidence 45567999999999999999999999999999999998754 3578999999999999999999999887532
Q ss_pred cccCCCC---------CCCCCCCCCCCCCCCCCcccc---ccc---ccccCCcccccCcceEE
Q 029849 117 RFHFGTN---------ASAGFSRSSWKGPPRPEALFV---DEN---ACIGCRECVHHASNTFV 164 (186)
Q Consensus 117 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~---~e~---~~igC~~C~~~~~~~F~ 164 (186)
....+.. .........|..+|+++..|. ++. ..++|..|+.+..+.|.
T Consensus 86 ~~~~~~~~~~~~~~~~m~~~e~~~~f~~~CrCG~~f~i~~~~l~~~~~v~C~sCSl~~~v~~~ 148 (155)
T 2l6l_A 86 DLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEEVSLISCDTCSLIIELLHY 148 (155)
T ss_dssp HHHTTCSSSEEEETTTSEEETTTTEEEEECSSSCEEEEETTHHHHCCEEECSSSSCEEEEECC
T ss_pred hccccccccceeeHHHhccccCCcEEEEcCCCCCeEEecHHHhCCCCEEECCCCceEEEEEEc
Confidence 2111100 000112234556677776664 111 57899999998887775
No 2
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=146.22 Aligned_cols=75 Identities=31% Similarity=0.458 Sum_probs=67.0
Q ss_pred cCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhccccc
Q 029849 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR 117 (186)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~ 117 (186)
...+...|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||+||+||.+|..||..+....
T Consensus 11 ~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~e 87 (99)
T 2yua_A 11 DCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDE 87 (99)
T ss_dssp CCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCHH
T ss_pred CCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccccc
Confidence 445667899999999999999999999999999999999963 467899999999999999999999999875543
No 3
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.86 E-value=1.6e-22 Score=143.80 Aligned_cols=73 Identities=29% Similarity=0.509 Sum_probs=65.3
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--------KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--------~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
..+...|||+||||+++++.++||+|||++++++|||+++. .+.+.|++|++||++|+||.+|+.||..+..
T Consensus 11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 34567899999999999999999999999999999999863 3467999999999999999999999998754
Q ss_pred c
Q 029849 116 M 116 (186)
Q Consensus 116 ~ 116 (186)
.
T Consensus 91 ~ 91 (94)
T 1wjz_A 91 P 91 (94)
T ss_dssp S
T ss_pred C
Confidence 3
No 4
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.3e-22 Score=137.95 Aligned_cols=71 Identities=44% Similarity=0.634 Sum_probs=64.5
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
.+...|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||.++..
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 75 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG 75 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence 3457799999999999999999999999999999999873 4678999999999999999999999988643
No 5
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.7e-22 Score=140.14 Aligned_cols=72 Identities=33% Similarity=0.554 Sum_probs=65.1
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhcccc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (186)
.....|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+...
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (88)
T 2ctr_A 3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA 75 (88)
T ss_dssp SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 3456799999999999999999999999999999999985 35789999999999999999999999987543
No 6
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.3e-22 Score=137.85 Aligned_cols=70 Identities=37% Similarity=0.524 Sum_probs=63.4
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
....|||+||||+++++.++||++||++++++|||+++.. +.+.|++|++||++|+||.+|..||..+..
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 78 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG 78 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 3467999999999999999999999999999999999753 567899999999999999999999987643
No 7
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.86 E-value=8e-22 Score=135.47 Aligned_cols=68 Identities=35% Similarity=0.536 Sum_probs=62.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
..|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+..
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 70 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE 70 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccc
Confidence 4689999999999999999999999999999999875 4678999999999999999999999998654
No 8
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.86 E-value=5.6e-22 Score=134.99 Aligned_cols=68 Identities=37% Similarity=0.603 Sum_probs=61.9
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHhhc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (186)
+....+||+||||+++++.++||++||++++++|||+++.. .+.|++|++||++|+||.+|..||..+
T Consensus 4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-AEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999753 688999999999999999999999875
No 9
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.4e-22 Score=137.07 Aligned_cols=71 Identities=37% Similarity=0.578 Sum_probs=64.6
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
.+...|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+..
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 74 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG 74 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 3456799999999999999999999999999999999975 4578999999999999999999999998654
No 10
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=7.4e-22 Score=140.06 Aligned_cols=70 Identities=39% Similarity=0.597 Sum_probs=63.9
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHHHcCCchhhHHHHhhcccc
Q 029849 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~---~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (186)
...|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+...
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (92)
T 2dmx_A 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS 79 (92)
T ss_dssp CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 45799999999999999999999999999999999975 35678999999999999999999999987544
No 11
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.2e-21 Score=138.11 Aligned_cols=71 Identities=30% Similarity=0.532 Sum_probs=64.7
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
.....|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+..
T Consensus 13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 3456799999999999999999999999999999999975 4678999999999999999999999998643
No 12
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.85 E-value=8.8e-22 Score=139.86 Aligned_cols=70 Identities=39% Similarity=0.525 Sum_probs=64.0
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
+....|||+||||+++++.++||++||++++++|||+++.. .+.|++|++||++|+||.+|..||.++..
T Consensus 4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 73 (92)
T 2o37_A 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-TEKFKEISEAFEILNDPQKREIYDQYGLE 73 (92)
T ss_dssp CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-HHHHHHHHHHHHHHTSHHHHHHHHHHCHH
T ss_pred cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-HHHHHHHHHHHHHHCCHHHHHHHHHHCHH
Confidence 44678999999999999999999999999999999999653 57899999999999999999999998743
No 13
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-21 Score=140.04 Aligned_cols=68 Identities=32% Similarity=0.486 Sum_probs=62.2
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHcCCchhhHHHHhhcccc
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (186)
.|||+||||+++++.++||++||++++++|||+++.. +.+.|++|++||++|+||.+|..||..+...
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~ 72 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG 72 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 5899999999999999999999999999999999753 5689999999999999999999999987543
No 14
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=7.1e-21 Score=139.23 Aligned_cols=70 Identities=30% Similarity=0.489 Sum_probs=64.1
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
.....+||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+.
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 4456799999999999999999999999999999999974 357899999999999999999999998864
No 15
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.6e-21 Score=140.84 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=64.7
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
.....|||+||||+++++.++||+|||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+..
T Consensus 16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 88 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS 88 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence 3456899999999999999999999999999999999973 4678999999999999999999999998753
No 16
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.82 E-value=5.5e-21 Score=138.36 Aligned_cols=69 Identities=39% Similarity=0.623 Sum_probs=63.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcccc
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (186)
..|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+...
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence 4699999999999999999999999999999999873 46789999999999999999999999987543
No 17
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.81 E-value=2.7e-20 Score=150.35 Aligned_cols=85 Identities=26% Similarity=0.454 Sum_probs=74.5
Q ss_pred cccceeeccCCCccCCCCccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------cHHHHHHHHHHHHHc
Q 029849 30 RCSVIRCCNGRAGERASKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVL 100 (186)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~d~Y~iLgv~~~--as~~eIk~ayr~~~~~~HPDk~~~~-------~~~~f~~i~~AY~vL 100 (186)
....++|..+...+.+....|||+||||+++ ++.++||++||++++++|||+++.. +.+.|++|++||+||
T Consensus 24 ~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL 103 (207)
T 3bvo_A 24 REDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTL 103 (207)
T ss_dssp CSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999888877778899999999987 7999999999999999999998743 245789999999999
Q ss_pred CCchhhHHHHhhcc
Q 029849 101 MRGDLRKDYDASIG 114 (186)
Q Consensus 101 ~d~~~R~~YD~~~~ 114 (186)
+||.+|..||..+.
T Consensus 104 sdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 104 LAPLSRGLYLLKLH 117 (207)
T ss_dssp HSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998754
No 18
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.80 E-value=3.8e-20 Score=135.15 Aligned_cols=71 Identities=28% Similarity=0.482 Sum_probs=64.1
Q ss_pred CCCccccccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-----ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 45 ASKKKNYYELLGVSVEA-NGQEIKEAYRKLQKKYHPDIAGQ-----KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~a-s~~eIk~ayr~~~~~~HPDk~~~-----~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
.....|||+||||++++ +.++||+|||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+..
T Consensus 11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 34567999999999999 99999999999999999999874 2467899999999999999999999998753
No 19
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-19 Score=127.45 Aligned_cols=62 Identities=26% Similarity=0.370 Sum_probs=57.0
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhH
Q 029849 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRK 107 (186)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~ 107 (186)
....|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|.
T Consensus 24 ~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp HTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred hcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 345799999999999999999999999999999999975 46789999999999999999886
No 20
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.76 E-value=5.8e-19 Score=140.74 Aligned_cols=68 Identities=44% Similarity=0.673 Sum_probs=62.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhcccc
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (186)
.|||+||||+++|+.++||+|||++++++|||+++. .+.+.|++|++||++|+||.+|+.||..+...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 71 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 71 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence 589999999999999999999999999999999863 46789999999999999999999999987543
No 21
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.75 E-value=9.3e-19 Score=137.82 Aligned_cols=67 Identities=30% Similarity=0.559 Sum_probs=60.9
Q ss_pred ccccccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCc-------cHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 48 KKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as--~~eIk~ayr~~~~~~HPDk~~~~-------~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
..|||+||||+++++ .++||++||++++++|||+++.. +.+.|..|++||+||+||.+|..||..+.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 569999999999987 99999999999999999998753 34789999999999999999999998875
No 22
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.74 E-value=6.7e-20 Score=135.18 Aligned_cols=64 Identities=28% Similarity=0.365 Sum_probs=59.4
Q ss_pred ccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHhhc
Q 029849 48 KKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~--~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (186)
..++|+||||+++++. ++||+|||++++++|||+++. .+.|++|++||+||+||.+|+.||.++
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--~e~f~~I~~AYevL~d~~~R~~~~~~~ 72 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFG 72 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence 4689999999999998 999999999999999999876 478999999999999999999999754
No 23
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.74 E-value=6.1e-20 Score=144.37 Aligned_cols=66 Identities=27% Similarity=0.338 Sum_probs=58.1
Q ss_pred CccccccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 47 KKKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~as--~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
...|+|+||||+++|+ .++||+|||++++++|||++++ ++.|++|++||++|+||.+|+.||.++.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~--~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C--CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 3579999999999998 6999999999999999999876 3789999999999999999999999874
No 24
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.73 E-value=1.7e-18 Score=136.06 Aligned_cols=65 Identities=25% Similarity=0.517 Sum_probs=59.9
Q ss_pred ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc-------cHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 50 NYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 50 d~Y~iLgv~~~a--s~~eIk~ayr~~~~~~HPDk~~~~-------~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
|||+||||++++ +..+||++||++++++|||+++.. +.+.|..|++||+||+||.+|..||..+.
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 899999999999 999999999999999999998753 23689999999999999999999999865
No 25
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.73 E-value=2.2e-19 Score=154.06 Aligned_cols=72 Identities=36% Similarity=0.591 Sum_probs=0.0
Q ss_pred cCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHcCCchhhHHHHhhcc
Q 029849 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (186)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (186)
+..+...|||+||||+++|+.+|||+|||++++++|||+++. .+.+.|++|++||++|+||.+|+.||.++.
T Consensus 22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 334566899999999999999999999999999999999874 467899999999999999999999999743
No 26
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.73 E-value=1e-18 Score=123.31 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=58.3
Q ss_pred ccCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHcCCchhh
Q 029849 42 GERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLR 106 (186)
Q Consensus 42 ~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~---~~~~f~~i~~AY~vL~d~~~R 106 (186)
....+...++|+||||+++|+.+|||+|||++++++|||+++.. +.+.|++|++||++|+|...|
T Consensus 9 ~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 9 VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 34456678999999999999999999999999999999999863 578999999999999998776
No 27
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.71 E-value=2e-18 Score=119.39 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=55.7
Q ss_pred CccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHH
Q 029849 47 KKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDY 109 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~--as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~Y 109 (186)
...++|+||||+++ ++.++||+|||++++++|||++++ .+.|++|++||++|+|+.+|..+
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~--~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC--HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHHhhHHHHHHH
Confidence 34689999999999 999999999999999999999754 58899999999999999998863
No 28
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.70 E-value=6.2e-18 Score=133.92 Aligned_cols=67 Identities=31% Similarity=0.559 Sum_probs=61.0
Q ss_pred CCcccccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHhhc
Q 029849 46 SKKKNYYELL------GVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (186)
Q Consensus 46 ~~~~d~Y~iL------gv~~-~as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (186)
....|||+|| |+++ +++.++||++||++++++|||+++. +.+.|++|++||+||+||.+|..||..+
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 3467999999 4665 8999999999999999999999976 6788999999999999999999999976
No 29
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.2e-17 Score=113.09 Aligned_cols=62 Identities=23% Similarity=0.317 Sum_probs=54.6
Q ss_pred cCCCCccccccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhh
Q 029849 43 ERASKKKNYYELLGVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 106 (186)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~-~as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R 106 (186)
...+...++|+||||++ +++.++||++||++++++|||+++ ..+.|++|++||++|+++..|
T Consensus 8 ~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g--~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 8 DPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG--SPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC--CHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHhhhhhc
Confidence 34556679999999999 799999999999999999999964 457899999999999988765
No 30
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.67 E-value=7.4e-18 Score=133.32 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=56.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----cHHHHHHHHHHHHHcCCchhhHHH
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDY 109 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~-----~~~~f~~i~~AY~vL~d~~~R~~Y 109 (186)
.|+|+||||+++|+.++||+|||++++++||||++.. +.+.|++|++||++|+||.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 6899999999999999999999999999999998743 567999999999999999999876
No 31
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.66 E-value=2e-17 Score=117.49 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=49.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----cHHHHHHHHHHHHHcCC
Q 029849 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMR 102 (186)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~-----~~~~f~~i~~AY~vL~d 102 (186)
.++|++|||+++|+.++||+|||++++++||||+++. +.+.|++|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999998753 56789999999999974
No 32
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.65 E-value=2.5e-17 Score=119.94 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=50.9
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------ccHHHHHHHHHHHHHcCCch
Q 029849 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---------KGHEHTLLLNEAYKVLMRGD 104 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~---------~~~~~f~~i~~AY~vL~d~~ 104 (186)
...|||+|||++. |+.++||+|||++++++||||++. .+.+.|++|++||++|+|+.
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 3479999999996 999999999999999999999863 14678999999999999985
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.59 E-value=1.2e-16 Score=149.23 Aligned_cols=71 Identities=42% Similarity=0.667 Sum_probs=40.7
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHcCCchhhHHHHhhccc
Q 029849 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (186)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (186)
.....|||+||||+++|+.++||+|||++++++|||+++. .+.+.|++|++||++|+||.+|+.||.++..
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~ 89 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 89 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC---
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccc
Confidence 4456799999999999999999999999999999999863 4678999999999999999999999998754
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.14 E-value=2.5e-11 Score=102.95 Aligned_cols=64 Identities=38% Similarity=0.638 Sum_probs=54.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----cHHHHHHHHHHHHHcCCchhhHHHHh
Q 029849 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDA 111 (186)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk~~~~-----~~~~f~~i~~AY~vL~d~~~R~~YD~ 111 (186)
..++|++||+.+.++.++|+++|+++++++|||+.+.. +.+.|+.|++||++|+||.+|..||.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 34899999999999999999999999999999998753 46789999999999999999999996
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1e-10 Score=77.60 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=46.4
Q ss_pred ccccccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCC
Q 029849 48 KKNYYELLGVSVE---ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR 102 (186)
Q Consensus 48 ~~d~Y~iLgv~~~---as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d 102 (186)
....|.||||+++ ++.++|+++||++...+|||+..+ .....+|++|+++|..
T Consensus 3 ~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS--~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 3 LDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS--FYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHHHH
Confidence 3467899999999 999999999999999999999754 3667789999999864
No 36
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=93.75 E-value=0.026 Score=35.34 Aligned_cols=35 Identities=40% Similarity=0.760 Sum_probs=28.2
Q ss_pred ccccccccccCCcccccCcceEEeeCCCCceEEee
Q 029849 142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKV 176 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~F~~e~~~g~a~~~~ 176 (186)
+.+|...|+||+.|...+|..|.++++.|.+.++.
T Consensus 4 ~~id~~~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~ 38 (64)
T 1dax_A 4 FYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKD 38 (64)
T ss_dssp CEECSTTCCSCCHHHHHCTTTEEECSSSSSEEECC
T ss_pred EEEccccCCCchHHHHhCCccEeEcCCCCEEEEec
Confidence 46788999999999999999998887656655543
No 37
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=93.64 E-value=0.025 Score=37.41 Aligned_cols=33 Identities=36% Similarity=0.683 Sum_probs=27.4
Q ss_pred ccccccccccCCcccccCcceEEeeCCCCceEEe
Q 029849 142 LFVDENACIGCRECVHHASNTFVMDEATGCARVK 175 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~F~~e~~~g~a~~~ 175 (186)
+.+|...|+||+.|...+|..|.++++ |.+.+.
T Consensus 4 v~vd~~~CigCg~C~~~CP~~~~~~~~-g~~~~~ 36 (81)
T 1iqz_A 4 TIVDKETCIACGACGAAAPDIYDYDED-GIAYVT 36 (81)
T ss_dssp EEECTTTCCCCSHHHHHCTTTEEECTT-SCEEET
T ss_pred EEEecccCcccChhhHhCchheeeCCC-CeEEEe
Confidence 568999999999999999999998755 665544
No 38
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=92.43 E-value=0.095 Score=31.73 Aligned_cols=33 Identities=33% Similarity=0.733 Sum_probs=25.3
Q ss_pred ccccccccccCCcccccCcceEEeeCCCCceEE
Q 029849 142 LFVDENACIGCRECVHHASNTFVMDEATGCARV 174 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~F~~e~~~g~a~~ 174 (186)
+.++...|++|+.|...+|..|.++++.|...+
T Consensus 2 i~i~~~~C~~C~~C~~~Cp~~~~~~~~~~~~~~ 34 (59)
T 1dwl_A 2 IVIDHEECIGCESCVELCPEVFAMIDGEEKAMV 34 (59)
T ss_dssp EEESSCCCSSCCGGGGTSTTTEEEEECSSCEEE
T ss_pred eEEChhhCcChhHHHHHCCHHheecCCCCcEEE
Confidence 457888999999999999988888333355444
No 39
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=91.30 E-value=0.074 Score=33.03 Aligned_cols=34 Identities=35% Similarity=0.653 Sum_probs=26.7
Q ss_pred ccccccccccCCcccccCcceEEeeCCCCceEEee
Q 029849 142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKV 176 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~F~~e~~~g~a~~~~ 176 (186)
+.+|+..|+||+.|...+|..|.++++ |...++.
T Consensus 4 ~~id~~~C~~C~~C~~~Cp~~~~~~~~-~~~~~~~ 37 (66)
T 1sj1_A 4 VSVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKV 37 (66)
T ss_dssp EEECTTTCCCCCHHHHHCTTTEEECTT-SCEEESC
T ss_pred EEECcccCcCchHHHHhCCceEEECCC-Cceeecc
Confidence 467889999999999999998888654 5544443
No 40
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.58 E-value=0.17 Score=46.07 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=36.5
Q ss_pred CccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHH
Q 029849 47 KKKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKV 99 (186)
Q Consensus 47 ~~~d~Y~iLgv~~~as~--~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~v 99 (186)
...+||.|||++.+... .+|+++||++++..+++ .+++..|..|+.|
T Consensus 627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------RHRYTLVDMANKV 675 (681)
T ss_dssp CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------HHHHHHHHHHHHH
T ss_pred cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------HHHHHHHHHhccc
Confidence 34469999999777655 77999999999965444 3678888888875
No 41
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=88.87 E-value=0.17 Score=30.67 Aligned_cols=33 Identities=30% Similarity=0.721 Sum_probs=25.2
Q ss_pred ccccccccccCCcccccCcceEEeeCCCCceEEee
Q 029849 142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKV 176 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~F~~e~~~g~a~~~~ 176 (186)
+.+| ..|++|+.|...+|..|.++++ |...++.
T Consensus 2 v~id-~~C~~C~~C~~~CP~~~~~~~~-~~~~~~~ 34 (58)
T 1f2g_A 2 IEVN-DDCMACEACVEICPDVFEMNEE-GDKAVVI 34 (58)
T ss_dssp CBCT-TTCCCCCHHHHHCTTTEEECSS-SSSEEES
T ss_pred cEEC-CcCccchHHHHhCCccEEECCC-CcEEEeC
Confidence 4578 8999999999999998887654 5444443
No 42
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=87.49 E-value=0.18 Score=30.53 Aligned_cols=27 Identities=33% Similarity=0.800 Sum_probs=22.7
Q ss_pred ccccccccccCCcccccCcceEEeeCC
Q 029849 142 LFVDENACIGCRECVHHASNTFVMDEA 168 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~F~~e~~ 168 (186)
+.+++..|++|+.|...+|..|.++++
T Consensus 3 ~~i~~~~C~~C~~C~~~Cp~~~~~~~~ 29 (60)
T 1rof_A 3 VRVDADACIGCGVCENLCPDVFQLGDD 29 (60)
T ss_dssp SEECTTTCCSCCSSTTTCTTTBCCCSS
T ss_pred EEEchhhCCCChHHHHhCcHHHeECCC
Confidence 457889999999999999987776654
No 43
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=81.66 E-value=0.1 Score=35.59 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=30.7
Q ss_pred CCCCCCCCCcccc-------cccccccCCcccccCcceEEeeCC
Q 029849 132 SWKGPPRPEALFV-------DENACIGCRECVHHASNTFVMDEA 168 (186)
Q Consensus 132 ~~~~~~~~~~~~~-------~e~~~igC~~C~~~~~~~F~~e~~ 168 (186)
.|..++++++.|. +.+..++|..|+++..+.|..++.
T Consensus 21 ~y~ypCrCGd~F~it~edL~~ge~iv~C~sCSL~I~V~~~~~d~ 64 (83)
T 1yop_A 21 MFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMIDVVFDKEDL 64 (83)
T ss_dssp EEEEEETTTEEEEEEHHHHHTTCCEEECSSSCCEEECBCCSSHH
T ss_pred EEEEeCCCCCeEEECHHHHhCCCEEEECCCCccEEEEEEccccc
Confidence 5888899987775 445689999999999999988765
No 44
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=81.25 E-value=0.11 Score=36.01 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=30.9
Q ss_pred CCCCCCCCCCcccc-------cccccccCCcccccCcceEEeeCC
Q 029849 131 SSWKGPPRPEALFV-------DENACIGCRECVHHASNTFVMDEA 168 (186)
Q Consensus 131 ~~~~~~~~~~~~~~-------~e~~~igC~~C~~~~~~~F~~e~~ 168 (186)
..|..++++++.|. +.+..++|..|+++..+.|..++.
T Consensus 20 ~~y~ypCrCGd~F~IteedLe~ge~iv~C~sCSL~IkV~y~~~~~ 64 (89)
T 2jr7_A 20 ETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQF 64 (89)
T ss_dssp TEEEEECTTSSEEEEEHHHHHHTCCEEECTTTCCEEEEECCHHHH
T ss_pred CEEEEcCCCCCEEEECHHHHhCCCEEEECCCCccEEEEEEccccc
Confidence 36888999988875 335589999999999999988665
No 45
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=81.12 E-value=0.16 Score=34.62 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=30.7
Q ss_pred CCCCCCCCCCcccc-------cccccccCCcccccCcceEEeeCC
Q 029849 131 SSWKGPPRPEALFV-------DENACIGCRECVHHASNTFVMDEA 168 (186)
Q Consensus 131 ~~~~~~~~~~~~~~-------~e~~~igC~~C~~~~~~~F~~e~~ 168 (186)
..|..++++++.|. +.+..++|..|+++..+.|..++.
T Consensus 27 ~~y~y~CrCGd~F~it~edL~~ge~iv~C~sCSL~I~V~~~~~~~ 71 (83)
T 1wge_A 27 ETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIKVIYDKDQF 71 (83)
T ss_dssp TEEEECCSSSSCEEEEHHHHHTTCCEEECTTTCCEEEEECCHHHH
T ss_pred CEEEEeCCCCCEEEECHHHHhCCCEEEECCCCceEEEEEeccccc
Confidence 36888999988875 345588999999999999987654
No 46
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=71.93 E-value=0.93 Score=30.69 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=22.9
Q ss_pred cccccccccccCCcccccCc-ceEEeeCC
Q 029849 141 ALFVDENACIGCRECVHHAS-NTFVMDEA 168 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~-~~F~~e~~ 168 (186)
.+.+|...|++|+.|...+| ..+.+++.
T Consensus 37 ~~~id~~~C~~Cg~C~~~CP~~ai~~~~~ 65 (103)
T 1xer_A 37 IVGVDFDLCIADGSCINACPVNVFQWYDT 65 (103)
T ss_dssp SEEEETTTCCCCCHHHHHCTTCCCEEEEC
T ss_pred eEEEehhhCCChhhHHHHcCccCeecccc
Confidence 46689999999999999999 56766554
No 47
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=65.57 E-value=1.4 Score=28.13 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=18.7
Q ss_pred cccccccccCCcccccCc-ceEEeeC
Q 029849 143 FVDENACIGCRECVHHAS-NTFVMDE 167 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~-~~F~~e~ 167 (186)
.++...|++|+.|...+| ..+.+++
T Consensus 4 ~~~~~~C~~Cg~C~~~CP~~a~~~~~ 29 (80)
T 1jb0_C 4 VKIYDTCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_dssp EEEETTCCCCCHHHHHCTTCCCEEEE
T ss_pred cccCCcCcChhHHHHHCCcccccccc
Confidence 456777889999988888 5566655
No 48
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=63.89 E-value=3.9 Score=26.22 Aligned_cols=24 Identities=21% Similarity=0.596 Sum_probs=17.3
Q ss_pred ccccccccCCcccccCcc-eEEeeC
Q 029849 144 VDENACIGCRECVHHASN-TFVMDE 167 (186)
Q Consensus 144 ~~e~~~igC~~C~~~~~~-~F~~e~ 167 (186)
++...|++|+.|...+|. .+.+++
T Consensus 3 ~~~~~C~~C~~C~~~CP~~ai~~~~ 27 (80)
T 1rgv_A 3 YINDDCTACDACVEECPNEAITPGD 27 (80)
T ss_dssp CCCSCCCCCCTTTTTCTTCCEECCS
T ss_pred EeCCCCcChhhHHHHcChhccCcCC
Confidence 566778888888888884 455544
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=63.28 E-value=1.5 Score=39.91 Aligned_cols=22 Identities=36% Similarity=0.788 Sum_probs=19.2
Q ss_pred cccccccccccCCcccccCcce
Q 029849 141 ALFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~~ 162 (186)
..++.|++||||+-|+..||+.
T Consensus 47 ~~~i~~~~c~~~~~~~~~cp~~ 68 (608)
T 3j16_B 47 IAFISEILCIGCGICVKKCPFD 68 (608)
T ss_dssp EEEECTTTCCCCCHHHHHCSSC
T ss_pred ceEEehhhccccccccccCCcc
Confidence 3468999999999999999984
No 50
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=62.99 E-value=4.5 Score=25.99 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=17.6
Q ss_pred ccccccccCCcccccCcc-eEEeeC
Q 029849 144 VDENACIGCRECVHHASN-TFVMDE 167 (186)
Q Consensus 144 ~~e~~~igC~~C~~~~~~-~F~~e~ 167 (186)
++...|++|+.|...+|. .+.+++
T Consensus 3 ~~~~~C~~C~~C~~~CP~~ai~~~~ 27 (82)
T 2fgo_A 3 KITDDCINCDVCEPECPNGAISQGE 27 (82)
T ss_dssp CCCTTCCCCCTTGGGCTTCCEEECS
T ss_pred eeCCCCCChhhHHHHCChhccCCCC
Confidence 566788899999888884 455543
No 51
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=61.80 E-value=4.4 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=17.3
Q ss_pred cccccccccCCcccccCcc-eEEee
Q 029849 143 FVDENACIGCRECVHHASN-TFVMD 166 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~-~F~~e 166 (186)
.++...|++|+.|...+|. .+.++
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~ 26 (82)
T 3eun_A 2 LMITDECINCDVCEPECPNGAISQG 26 (82)
T ss_dssp EEECTTCCCCCTTGGGCTTCCEEEC
T ss_pred eEeCCCCcCccchHHHCChhheEcC
Confidence 3567788888888888886 44443
No 52
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=58.81 E-value=4.9 Score=26.13 Aligned_cols=17 Identities=24% Similarity=0.651 Sum_probs=9.9
Q ss_pred ccccccccCCcccccCc
Q 029849 144 VDENACIGCRECVHHAS 160 (186)
Q Consensus 144 ~~e~~~igC~~C~~~~~ 160 (186)
++...|++|+.|...+|
T Consensus 3 ~~~~~C~~C~~C~~~CP 19 (85)
T 2zvs_A 3 LITKKCINCDMCEPECP 19 (85)
T ss_dssp EECTTCCCCCTTTTTCT
T ss_pred EeCCcCcChhHHHHHCc
Confidence 34455666666666665
No 53
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=42.41 E-value=10 Score=25.65 Aligned_cols=27 Identities=19% Similarity=0.588 Sum_probs=20.5
Q ss_pred ccccccccccCCcccccCcce-EEeeCC
Q 029849 142 LFVDENACIGCRECVHHASNT-FVMDEA 168 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~-F~~e~~ 168 (186)
+.++...|++|+.|...+|.. ..++++
T Consensus 32 ~~i~~~~C~~Cg~C~~~CP~~ai~~~~~ 59 (106)
T 7fd1_A 32 LVIHPDECIDCALCEPECPAQAIFSEDE 59 (106)
T ss_dssp EEECTTTCCCCCTTGGGCTTCCEEEGGG
T ss_pred EEECcccCCChhhhHHhCCChhhhcccc
Confidence 457888899999999999863 444443
No 54
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=40.77 E-value=5.8 Score=29.32 Aligned_cols=17 Identities=29% Similarity=0.765 Sum_probs=15.0
Q ss_pred cccccccCCcccccCcc
Q 029849 145 DENACIGCRECVHHASN 161 (186)
Q Consensus 145 ~e~~~igC~~C~~~~~~ 161 (186)
|...|++|+.|...||.
T Consensus 49 d~~~Ci~C~~C~~~CP~ 65 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPA 65 (182)
T ss_dssp SCBSCCCCCHHHHHCTT
T ss_pred CCccCcccccchhhCCc
Confidence 56789999999999985
No 55
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=37.90 E-value=9.6 Score=36.56 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=23.8
Q ss_pred cccccccccccCCcccccCc----ceEEeeCCCC
Q 029849 141 ALFVDENACIGCRECVHHAS----NTFVMDEATG 170 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~----~~F~~e~~~g 170 (186)
.+.+|+..|++|+.|...|| ..+.+++..+
T Consensus 945 ~~~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~~~ 978 (1025)
T 1gte_A 945 VAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETH 978 (1025)
T ss_dssp EEEECTTTCCCCCHHHHHHHHHSCSCEEECTTTC
T ss_pred eEEEEcccCcccCHHHHhcCccccCCEEEeCCCc
Confidence 34578899999999999999 6777776533
No 56
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=34.03 E-value=15 Score=24.59 Aligned_cols=25 Identities=16% Similarity=0.627 Sum_probs=19.6
Q ss_pred ccccccccccCCcccccCcce-EEee
Q 029849 142 LFVDENACIGCRECVHHASNT-FVMD 166 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~-F~~e 166 (186)
+.++...|++|+.|...+|.. ..+.
T Consensus 32 ~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 57 (105)
T 2v2k_A 32 LYIHPDECVDCGACEPVCPVEAIYYE 57 (105)
T ss_dssp EEECTTTCCCCCCSGGGCTTCCEEEG
T ss_pred EEEeCCcCcchhhHHHhCCccCEEec
Confidence 456888999999999999874 4443
No 57
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=33.88 E-value=74 Score=19.42 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHH
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD 110 (186)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 14 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH---NAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC---HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4566777778888865 4577788999999998666554433
No 58
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=33.79 E-value=8.6 Score=32.91 Aligned_cols=21 Identities=14% Similarity=0.622 Sum_probs=18.7
Q ss_pred cccccccccccCCcccccCcc
Q 029849 141 ALFVDENACIGCRECVHHASN 161 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~ 161 (186)
.+.+|...|++|+.|...||.
T Consensus 250 ~v~id~~~Ci~Cg~C~~~CP~ 270 (386)
T 3or1_B 250 SVAINNDRCMYCGNCYTMCPA 270 (386)
T ss_dssp EEEECTTTCCCCCHHHHHCTT
T ss_pred ccccCCCcCCccccHHHhCcH
Confidence 366788999999999999997
No 59
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=33.32 E-value=12 Score=32.50 Aligned_cols=29 Identities=17% Similarity=0.621 Sum_probs=23.1
Q ss_pred CcccccccccccCCcccccCcceEEeeCC
Q 029849 140 EALFVDENACIGCRECVHHASNTFVMDEA 168 (186)
Q Consensus 140 ~~~~~~e~~~igC~~C~~~~~~~F~~e~~ 168 (186)
..+.+|...|++|..|...||..-....+
T Consensus 277 ~~~~id~~~Ci~Cg~Ci~~CP~~~~~~~~ 305 (418)
T 3mm5_A 277 KELTIDNRECVRCMHCINKMPKALKPGDE 305 (418)
T ss_dssp SCEEECTTTCCCCCHHHHHCTTTEECCSS
T ss_pred ceeEEChhhcCccChhHHhCcHhhccCCC
Confidence 35567899999999999999997555444
No 60
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=31.03 E-value=10 Score=32.73 Aligned_cols=22 Identities=32% Similarity=0.792 Sum_probs=18.1
Q ss_pred cccccccccccCCcccccCcce
Q 029849 141 ALFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~~ 162 (186)
.+.+|...|++|+.|...||..
T Consensus 27 ~i~~d~~kCi~Cg~C~~~CP~~ 48 (421)
T 1hfe_L 27 FVQIDEAKCIGCDTCSQYCPTA 48 (421)
T ss_dssp SEEECTTTCCCCCHHHHHCTTC
T ss_pred eEEECcccCCCccHHHHhcCcC
Confidence 4567888999999999998863
No 61
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=30.48 E-value=17 Score=29.56 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=20.9
Q ss_pred cccccccccccCCcccccCcc-eEEeeCC
Q 029849 141 ALFVDENACIGCRECVHHASN-TFVMDEA 168 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~-~F~~e~~ 168 (186)
.+.+|...|+||+.|...||. ...+++.
T Consensus 91 ~v~id~~~CigC~~C~~~CP~~Ai~~~~~ 119 (274)
T 1ti6_B 91 IVLIDPEKAKGKKELLDTCPYGVMYWNEE 119 (274)
T ss_dssp CEEECTTTTTTCGGGGGGCSSCCCEEETT
T ss_pred cEEechhhccchHHHHhhCccCCeEEEcc
Confidence 356788999999999999986 3344443
No 62
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=30.48 E-value=14 Score=28.27 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=21.7
Q ss_pred cccccccccccCCcccccCcc-eEEeeCCC
Q 029849 141 ALFVDENACIGCRECVHHASN-TFVMDEAT 169 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~-~F~~e~~~ 169 (186)
.+.++...|++|+.|...+|. .+.++++.
T Consensus 82 ~~~id~~~CigC~~C~~~CP~~Ai~~~~~~ 111 (195)
T 2vpz_B 82 LVLVDPKKCIACGACIAACPYDARYLHPAG 111 (195)
T ss_dssp CEEECTTTCCCCCHHHHHCTTCCCEECTTS
T ss_pred ceeecCCCCCCcChhHhhCCCCCeEECCCC
Confidence 355788899999999999984 45565553
No 63
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=30.11 E-value=11 Score=32.00 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=19.6
Q ss_pred CcccccccccccCCcccccCcce
Q 029849 140 EALFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 140 ~~~~~~e~~~igC~~C~~~~~~~ 162 (186)
+.+.+|...|++|+.|...||..
T Consensus 232 ~~~~id~~~C~~Cg~C~~~CP~~ 254 (366)
T 3mm5_B 232 KTIKVDVEKCMYCGNCYTMCPGM 254 (366)
T ss_dssp TEEEECGGGCCCCCHHHHHCTTC
T ss_pred CeEEEehhhCCCcchHHHhCCHh
Confidence 45667889999999999999983
No 64
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=30.01 E-value=21 Score=22.35 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=17.3
Q ss_pred ccccccccc--CCcccccCcce-EEee
Q 029849 143 FVDENACIG--CRECVHHASNT-FVMD 166 (186)
Q Consensus 143 ~~~e~~~ig--C~~C~~~~~~~-F~~e 166 (186)
.++...|++ |+.|...+|.. +.++
T Consensus 2 ~i~~~~C~~c~C~~C~~~Cp~~ai~~~ 28 (77)
T 1bc6_A 2 YVITEPCIGTKDASCVEVCPVDCIHEG 28 (77)
T ss_dssp EECCSTTTTCCCCSSTTTCTTCCEEEC
T ss_pred EEeCccCCCCCcchhHHhcccccEEeC
Confidence 356778888 88899888863 4443
No 65
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=29.96 E-value=21 Score=20.67 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=14.5
Q ss_pred ccccccCCcccccCcce
Q 029849 146 ENACIGCRECVHHASNT 162 (186)
Q Consensus 146 e~~~igC~~C~~~~~~~ 162 (186)
...|++|+.|...+|..
T Consensus 5 ~~~C~~C~~C~~~CP~~ 21 (55)
T 2fdn_A 5 NEACISCGACEPECPVN 21 (55)
T ss_dssp CTTCCCCCTTGGGCTTC
T ss_pred cccCcChhhHHHHCCcc
Confidence 66799999999999864
No 66
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=29.95 E-value=29 Score=25.46 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=28.5
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 029849 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDI 81 (186)
Q Consensus 50 d~Y~iLgv~~~as~~eIk~ayr~~~~~~HPDk 81 (186)
-++..|.|....+.+|++++=..+..++||+-
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 45788888888999999999999999999993
No 67
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=29.49 E-value=1e+02 Score=19.06 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHh
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~ 111 (186)
.+.+|...+.-||+.. ..+..+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK---VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC---HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 4556777778899864 45777889999999987 666654
No 68
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=29.08 E-value=12 Score=33.53 Aligned_cols=29 Identities=24% Similarity=0.565 Sum_probs=23.6
Q ss_pred CcccccccccccCCcccccCcc-----eEEeeCC
Q 029849 140 EALFVDENACIGCRECVHHASN-----TFVMDEA 168 (186)
Q Consensus 140 ~~~~~~e~~~igC~~C~~~~~~-----~F~~e~~ 168 (186)
..+.+|...|++|+.|+..||. .+.+++.
T Consensus 138 ~~i~~d~~kCi~Cg~Cv~~CP~~~~~~ai~~~~~ 171 (574)
T 3c8y_A 138 KSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNK 171 (574)
T ss_dssp SSEEEEGGGCCCCCHHHHHHHHHHSCCCSEEEEE
T ss_pred CcceeCcccCcCCCCccchhCchhcCCceeeccC
Confidence 3567899999999999999994 6666654
No 69
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=28.78 E-value=1.2e+02 Score=19.71 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHH
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD 110 (186)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 19 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~eeK~~Y~~ 59 (92)
T 2crj_A 19 LNERREQIRTRHPDLP---FPEITKMLGAEWSKLQPAEKQRYLD 59 (92)
T ss_dssp HHHHHHHHHHHCTTCC---HHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556666777888854 4577788999999999887655444
No 70
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=28.42 E-value=19 Score=29.36 Aligned_cols=30 Identities=17% Similarity=0.430 Sum_probs=22.1
Q ss_pred cccccccccccCCcccccCcc-eEEeeCCCC
Q 029849 141 ALFVDENACIGCRECVHHASN-TFVMDEATG 170 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~-~F~~e~~~g 170 (186)
.+.++...|++|+.|...||. .+.+++..+
T Consensus 125 ~v~id~~~CigCg~C~~~CP~~ai~~~~~~~ 155 (294)
T 1kqf_B 125 IVDFQSENCIGCGYCIAGCPFNIPRLNKEDN 155 (294)
T ss_dssp CEEECGGGCCCCCHHHHHCTTCCCEEETTTT
T ss_pred ceEeCcccCCCcchhhhcCCCCCcEecCCCC
Confidence 345688899999999999986 555655533
No 71
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=28.15 E-value=1e+02 Score=19.45 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHh
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~ 111 (186)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 16 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 16 AKDERRKILQAFPDMH---NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHHTTCSSCC---HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 3456666777788754 45777899999999998776655443
No 72
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=27.94 E-value=13 Score=33.73 Aligned_cols=21 Identities=33% Similarity=0.828 Sum_probs=16.7
Q ss_pred ccccccccccCCcccccCcce
Q 029849 142 LFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~ 162 (186)
.++.|++|+||+-|...||+.
T Consensus 62 ~~i~e~~c~gc~~~~~~~p~~ 82 (607)
T 3bk7_A 62 PIIQEASCTGCGICVHKCPFN 82 (607)
T ss_dssp EEECTTTCCCCCHHHHHCSSC
T ss_pred ceeeecccCccccccCCCCcc
Confidence 356789999999998777653
No 73
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=27.14 E-value=18 Score=22.71 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=13.1
Q ss_pred cccccccc--CCcccccCcc-eEEee
Q 029849 144 VDENACIG--CRECVHHASN-TFVMD 166 (186)
Q Consensus 144 ~~e~~~ig--C~~C~~~~~~-~F~~e 166 (186)
++...|++ |+.|...+|. .+.++
T Consensus 3 i~~~~C~~c~C~~C~~~CP~~ai~~~ 28 (78)
T 1h98_A 3 VICEPCIGVKDQSCVEVCPVECIYDG 28 (78)
T ss_dssp EECGGGTTTCCCHHHHHCTTCCEEEC
T ss_pred EEchhCCCCCcChhhhhcCccceEcC
Confidence 45556666 6666666664 34443
No 74
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=26.98 E-value=1.2e+02 Score=19.13 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHH
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD 110 (186)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 18 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH---NAELSKMLGKSWKALTLAEKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSSC---HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4566777788899865 4577788999999998666554433
No 75
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.65 E-value=72 Score=20.73 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHh
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~ 111 (186)
-..+|...+.-||+.. ...+..+.|.+.|..|++..+....+.
T Consensus 17 ~~e~R~~ik~~~P~~~--~~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS--DEADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHHCTTCC--SHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777888899974 245778899999999997766655443
No 76
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=25.13 E-value=1.2e+02 Score=18.76 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHH
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD 110 (186)
.+.+|...+.-||+... .+..+.|.+.|..|++..+....+
T Consensus 16 ~~~~r~~~~~~~p~~~~---~eisk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 16 SRDQRRKMALENPRMRN---SEISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHHCSCCSS---SHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCH---HHHHHHHHhHHHhCCHHHHHHHHH
Confidence 35566667777898653 366788999999998665544433
No 77
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=24.65 E-value=1e+02 Score=20.05 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHh
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~ 111 (186)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 32 ~~~~r~~~k~~~P~~~---~~eisk~lg~~Wk~ls~eeK~~Y~~~ 73 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS---ESELTRLLARMWNDLSEKKKAKYKAR 73 (90)
T ss_dssp HHHTHHHHHHHCTTSC---HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455666777889853 45777899999999997665554443
No 78
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=23.38 E-value=77 Score=24.91 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHH
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD 110 (186)
-+..|...+.-||+.. ..+..+.|.+.|..|++..+....|
T Consensus 53 ~~e~r~~~k~~~P~~~---~~eisk~lge~Wk~Ls~~EK~~y~~ 93 (238)
T 3tmm_A 53 SKEQLPIFKAQNPDAK---TTELIRRIAQRWRELPDSKKKIYQD 93 (238)
T ss_dssp HHHHHHHHHHHSTTSC---HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3555666777899875 4577788899999998776555443
No 79
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=22.79 E-value=1.4e+02 Score=18.85 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHH
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD 110 (186)
.+.+|...+.-||+... .+..+.|.+.|..|++..+....+
T Consensus 19 ~~~~r~~~~~~~p~~~~---~eisk~lg~~Wk~ls~~eK~~y~~ 59 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDN---RGATKILADWWAVLDPKEKQKYTD 59 (82)
T ss_dssp HHHHHHHHHHHCSSSCT---THHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH---HHHHHHHHHHHhhCCHHHHHHHHH
Confidence 45667777778998643 366788999999999765544443
No 80
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=22.75 E-value=99 Score=19.78 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHH--HHHHHcCCc-hhhHHHHhhc
Q 029849 60 EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLN--EAYKVLMRG-DLRKDYDASI 113 (186)
Q Consensus 60 ~as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~--~AY~vL~d~-~~R~~YD~~~ 113 (186)
-++.+|.+.+|+++....+-+..-.-. +....|. .-|.+|.++ .++..|+.+.
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~tWe-~~~~~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNASWE-QAMKMIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCCHH-HHHHHHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCCHH-HHHHHHccCccccccCCHHHHHHHHHHHH
Confidence 368999999999999988644332221 1122222 256677764 4555676654
No 81
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=22.07 E-value=19 Score=26.35 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=17.6
Q ss_pred ccccccccccCCcccccCcce
Q 029849 142 LFVDENACIGCRECVHHASNT 162 (186)
Q Consensus 142 ~~~~e~~~igC~~C~~~~~~~ 162 (186)
+.++...|++|+.|...||..
T Consensus 40 ~~id~~~C~~Cg~Cv~~CP~~ 60 (150)
T 1jnr_B 40 YNREPDMCWECYSCVKMCPQG 60 (150)
T ss_dssp EESCGGGCCCCCHHHHHCTTC
T ss_pred eeeCcccCcCHhHHHHhCCcc
Confidence 346778899999999999974
No 82
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=21.89 E-value=19 Score=35.47 Aligned_cols=20 Identities=20% Similarity=0.552 Sum_probs=17.7
Q ss_pred cccccccccCCcccccCcce
Q 029849 143 FVDENACIGCRECVHHASNT 162 (186)
Q Consensus 143 ~~~e~~~igC~~C~~~~~~~ 162 (186)
.+|...||+|+.|+..||..
T Consensus 682 ~~d~~kCi~Cg~Cv~vCP~~ 701 (1231)
T 2c42_A 682 QWVPENCIQCNQCAFVCPHS 701 (1231)
T ss_dssp EECTTTCCCCCHHHHHCSSC
T ss_pred EEeCccCCchhhHHHhCCcc
Confidence 46889999999999999985
No 83
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=21.82 E-value=23 Score=32.99 Aligned_cols=21 Identities=29% Similarity=0.770 Sum_probs=17.1
Q ss_pred cccccccccccCCcccccCcc
Q 029849 141 ALFVDENACIGCRECVHHASN 161 (186)
Q Consensus 141 ~~~~~e~~~igC~~C~~~~~~ 161 (186)
.+.+|...||+|+.|+..|+.
T Consensus 173 ~i~~d~~~CI~C~~Cv~~C~~ 193 (783)
T 3i9v_3 173 FVILDRERCIHCKRCVRYFEE 193 (783)
T ss_dssp TEEECTTTCCCCCHHHHHHHH
T ss_pred cEEEchhhCCCccHHHHHhhh
Confidence 455789999999999998843
No 84
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=21.66 E-value=1.5e+02 Score=18.36 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHH
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD 110 (186)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 14 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH---NAEISKRLGKRWKLLKDSDKIPFIQ 54 (79)
T ss_dssp HHHHHHHHHTTSTTSC---HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC---HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4556677777788754 4567788999999998665554433
No 85
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.52 E-value=1.2e+02 Score=19.80 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHH
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD 110 (186)
.+..|...+.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 19 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~eeK~~y~~ 59 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS---LEDATLQIEELWKTLSEEEKLKYEE 59 (92)
T ss_dssp HHHHHHHHHHHCCSSC---HHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3455666777789864 4577788999999998766554433
No 86
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=21.15 E-value=20 Score=35.35 Aligned_cols=18 Identities=22% Similarity=0.809 Sum_probs=16.1
Q ss_pred ccccccccCCcccccCcc
Q 029849 144 VDENACIGCRECVHHASN 161 (186)
Q Consensus 144 ~~e~~~igC~~C~~~~~~ 161 (186)
++...|+||+.|+..||.
T Consensus 739 v~~~~C~gCG~Cv~vCP~ 756 (1231)
T 2c42_A 739 INTLDCMGCGNCADICPP 756 (1231)
T ss_dssp ECTTTCCCCCHHHHHCSS
T ss_pred echhhCCChhHHHhhCCC
Confidence 566789999999999998
No 87
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=21.05 E-value=1.5e+02 Score=19.09 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHH
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD 110 (186)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 29 ~~~~r~~~~~~~P~~~---~~eisk~lg~~Wk~ls~eeK~~y~~ 69 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD---NRAISVILGDRWKKMKNEERRMYTL 69 (87)
T ss_dssp HHHTHHHHHHHCTTSC---HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 4556666777888853 4567788999999999666554433
No 88
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=20.84 E-value=72 Score=20.51 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=17.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 029849 54 LLGVSVEANGQEIKEAYRKLQ 74 (186)
Q Consensus 54 iLgv~~~as~~eIk~ayr~~~ 74 (186)
|=||+++++.++|++.|.+.-
T Consensus 6 v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 348999999999999998764
No 89
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=20.63 E-value=1.6e+02 Score=18.19 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHH
Q 029849 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (186)
Q Consensus 67 k~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD 110 (186)
.+..|...+.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 18 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS---IGDVAKKLGEMWNNTAADDKQPYEK 58 (77)
T ss_dssp HHHHHHHHHHHCTTCC---HHHHHHHHHHHHHHSCGGGSHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455666677788854 4577789999999999776554433
No 90
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=20.21 E-value=63 Score=21.00 Aligned_cols=45 Identities=22% Similarity=0.160 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHcCCchhhHHHHhhc
Q 029849 60 EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (186)
Q Consensus 60 ~as~~eIk~ayr~~~~~~HPDk~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (186)
+.+...+-+.|-++... +|+.. ..|++|-+.|.-.++|+.||-.-
T Consensus 9 ~~SL~~lt~kFi~l~~~-~~~~~--------i~l~~aa~~L~v~~kRRiYDI~N 53 (76)
T 1cf7_A 9 EKSLGLLTTKFVSLLQE-AKDGV--------LDLKLAADTLAVRQKRRIYDITN 53 (76)
T ss_dssp TTCHHHHHHHHHHHHHH-SSTTE--------EEHHHHHHHTTTCCTHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHh-CCCCc--------CcHHHHHHHhCCccceehhhHHH
Confidence 34666777777776654 34321 23778888887558999999653
Done!