BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029850
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2
Length = 212
Score = 268 bits (686), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 127/176 (72%), Positives = 150/176 (85%)
Query: 11 VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
VGFEM+D IA + I MNT QSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE++GPLAA+YQ
Sbjct: 37 VGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQ 96
Query: 71 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
VPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG+PPGK
Sbjct: 97 VPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGK 156
Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 186
MD +A+LLQKFS ER QID ALEQGV+AVRTLVL GF + RFN+ QKYK+H V
Sbjct: 157 MDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHRV 212
>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron
Splicing Factor Crs2
Length = 205
Score = 259 bits (663), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 123/169 (72%), Positives = 145/169 (85%)
Query: 11 VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
VGFEM+D IA + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE++GPLAA+YQ
Sbjct: 37 VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQ 96
Query: 71 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
VPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG+PPGK
Sbjct: 97 VPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGK 156
Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 179
MD +A+LLQKFS ER QID ALEQGV+AVRTLVL GF + RFN+ Q
Sbjct: 157 MDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ 205
>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing
Factor Crs2
Length = 202
Score = 254 bits (650), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 121/170 (71%), Positives = 143/170 (84%)
Query: 11 VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
VGFEM+D IA + I MNT Q K+L+G GSIGEVP+L+ KPQ+YMN+SGE++GPLAA+YQ
Sbjct: 25 VGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQ 84
Query: 71 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
VPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG+PPGK
Sbjct: 85 VPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGK 144
Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 180
MD +A+LLQKFS ER QID ALEQGV+AVRTLVL GF + RFN+ QK
Sbjct: 145 MDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQK 194
>pdb|2LGJ|A Chain A, Solution Structure Of Mspth
Length = 191
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Query: 31 QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVL 90
+S A + G + ++LAKP+ YMN SG VGPLA Y VP + I+VI+DE+ + G +
Sbjct: 45 KSGAEVVTGRLAGTSVVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRI 104
Query: 91 RLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID 150
RL+ GG G HNGL+SV + L G + F R+ IG+G PPG+ D A++L+ F+ ER ++
Sbjct: 105 RLKLGGGEGGHNGLRSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVP 163
Query: 151 AALEQGVEAVRTLVLNGFD 169
+EQ +A L+ G +
Sbjct: 164 TIVEQAADATELLIAQGLE 182
>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis H37rv
Length = 204
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Query: 31 QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVL 90
+S A + G ++LAKP+ YMN SG +GPLA Y V +I+VI+D++ L G +
Sbjct: 45 RSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRI 104
Query: 91 RLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID 150
RL+ GG G HNGL+SV+ L G ++F R+ IGIG PPG+ D A++L+ F+P ER ++
Sbjct: 105 RLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVP 163
Query: 151 AALEQGVEAVRTLVLNGFDQNISR 174
EQ +A L+ G + +R
Sbjct: 164 TICEQAADATELLIEQGMEPAQNR 187
>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|A Chain A, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|B Chain B, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2K|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|3TCK|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 4
pdb|3TCN|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TCN|B Chain B, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TD2|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 5
pdb|3TD6|A Chain A, Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis
From Trigonal Partially Dehydrated Crystal
Length = 191
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Query: 31 QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVL 90
+S A + G ++LAKP+ YMN SG +GPLA Y V +I+VI+D++ L G +
Sbjct: 45 RSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRI 104
Query: 91 RLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID 150
RL+ GG G HNGL+SV+ L G ++F R+ IGIG PPG+ D A++L+ F+P ER ++
Sbjct: 105 RLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVP 163
Query: 151 AALEQGVEAVRTLVLNGFDQNISR 174
EQ +A L+ G + +R
Sbjct: 164 TICEQAADATELLIEQGMEPAQNR 187
>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis
pdb|3KK0|A Chain A, Crystal Structure Of Partially Folded Intermediate State
Of Peptidyl- Trna Hydrolase From Mycobacterium Smegmatis
pdb|3P2J|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis At 2.2 A Resolution
Length = 191
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 86/139 (61%), Gaps = 1/139 (0%)
Query: 31 QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVL 90
+S A + G + ++LAKP+ MN SG VGPLA Y VP + I+VI+DE+ + G +
Sbjct: 45 KSGAEVVTGRLAGTTVVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRI 104
Query: 91 RLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID 150
RL+ GG G HNGL+SV + L G + F R+ IG+G PPG+ D A++L+ F+ ER ++
Sbjct: 105 RLKLGGGEGGHNGLRSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVP 163
Query: 151 AALEQGVEAVRTLVLNGFD 169
+EQ +A L+ G +
Sbjct: 164 TIVEQAADATELLIAQGLE 182
>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Acinetobacter Baumannii At 1.86 A Resolution
pdb|4FOT|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 2.20 A Resolution
pdb|4HOY|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 1.78 A Resolution
pdb|4IKO|A Chain A, Structure Of Peptidyl- Trna Hydrolase From Acinetobacter
Baumannii At 1.90 A Resolution
Length = 193
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 3/166 (1%)
Query: 12 GFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
GF ++ +A I + N + + G G+I + L P YMN SG+SV P + YQ
Sbjct: 25 GFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQ 84
Query: 71 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
+ IL+ +DE+ + GV+RL+ GGHG HNGL+ ++ H+ F RL IGIG+P K
Sbjct: 85 IAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI--GPNFHRLRIGIGHPGSK 142
Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
+ ++L K E+ +D A++ + V+ LV Q +++ N
Sbjct: 143 ERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQAMNQIN 188
>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Francisella Tularensis
Length = 207
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 40 SIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHG 99
SI ++L P YMN SG +V +A Y++ ILV++DE+ + +G +RL+ GGHG
Sbjct: 73 SIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHG 132
Query: 100 HHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGV 157
HNGL+S+ HL G ++ RL IGIG+P K + Y+L S +++ ID+A++ G+
Sbjct: 133 GHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 189
>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
pdb|3VJR|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
Length = 197
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 74/136 (54%)
Query: 40 SIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHG 99
++G + L P +MN SG++V +A+ +++ ILV +DE+ L GV + + GGHG
Sbjct: 56 TLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHG 115
Query: 100 HHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEA 159
HNGLK +++ L F RL IGIG+P K + ++L K E++ ID A+++
Sbjct: 116 GHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARC 175
Query: 160 VRTLVLNGFDQNISRF 175
+G + +R
Sbjct: 176 TEMWFTDGLTKATNRL 191
>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli
Length = 193
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 74/136 (54%)
Query: 40 SIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHG 99
++G + L P +MN SG++V +A+ +++ ILV +DE+ L GV + + GGHG
Sbjct: 52 TLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHG 111
Query: 100 HHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEA 159
HNGLK +++ L F RL IGIG+P K + ++L K E++ ID A+++
Sbjct: 112 GHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARC 171
Query: 160 VRTLVLNGFDQNISRF 175
+G + +R
Sbjct: 172 TEMWFTDGLTKATNRL 187
>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
Length = 211
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 74/136 (54%)
Query: 40 SIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHG 99
++G + L P +MN SG++V +A+ +++ ILV +DE+ L GV + + GGHG
Sbjct: 73 TLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHG 132
Query: 100 HHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEA 159
HNGLK +++ L F RL IGIG+P K + ++L K E++ ID A+++
Sbjct: 133 GHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARC 192
Query: 160 VRTLVLNGFDQNISRF 175
+G + +R
Sbjct: 193 TEMWFTDGLTKATNRL 208
>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From
Burkholderia Thailandensis
Length = 222
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 19/177 (10%)
Query: 5 TIISCQVGFEMIDHIAQAQRIAMNTIQSK----ALIGIGSIGEVPILLAKPQAYMNFSGE 60
T GF ++D +A R A T++ + + + L +PQ YMN SG+
Sbjct: 37 TATRHNAGFWLVDQLA---REAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQ 93
Query: 61 SVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 120
SV LA +++ ILV +DE+ L G ++L+ GG G HNGLK + HL +++ RL
Sbjct: 94 SVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHLS-SQQYWRL 152
Query: 121 CIGIGNPP----------GKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNG 167
IGIG+P K D+ ++L+ E++ IDAA+E+ + AV V+ G
Sbjct: 153 RIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERAL-AVMPAVVKG 208
>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase
Length = 199
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 11 VGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
G ++ +A AQ +++ + L+G S + L P YMN SG+SV LA +
Sbjct: 30 AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF 89
Query: 70 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
++ ILV +DE+ + GV +L+ GGHG HNGL+ ++ L F RL +GIG+P
Sbjct: 90 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGH 149
Query: 130 KMDMKAYLLQKFSPIEREQIDAALE 154
+ Y+L + E+E +D +++
Sbjct: 150 SSLVSGYVLGRAPRSEQELLDTSID 174
>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DHW|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DJJ|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4DJJ|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4ERX|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4ERX|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4FNO|A Chain A, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
pdb|4FNO|B Chain B, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
Length = 194
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 11 VGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
G ++ +A AQ +++ + L+G S + L P YMN SG+SV LA +
Sbjct: 24 AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF 83
Query: 70 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
++ ILV +DE+ + GV +L+ GGHG HNGL+ ++ L F RL +GIG+P
Sbjct: 84 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGH 143
Query: 130 KMDMKAYLLQKFSPIEREQIDAALE 154
+ Y+L + E+E +D +++
Sbjct: 144 SSLVSGYVLGRAPRSEQELLDTSID 168
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 79 IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDM 133
I ++ + G+L H N ++ + L G R PR+ IG + G D+
Sbjct: 31 ILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFIGKDSIGGSSDL 85
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 15/116 (12%)
Query: 47 LLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMS-----LMNGVLRLQPKGGHGHH 101
L+ P Y+ F G L + H +++ DE+ + N +L++ G +
Sbjct: 533 LIGAPPGYVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDN 589
Query: 102 NGLKS-------VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID 150
NG K+ VM G RE R IG+ + D + + F+P R ++D
Sbjct: 590 NGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD 645
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,639,554
Number of Sequences: 62578
Number of extensions: 229811
Number of successful extensions: 544
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 520
Number of HSP's gapped (non-prelim): 18
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)