Query 029850
Match_columns 186
No_of_seqs 140 out of 1037
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0193 Pth Peptidyl-tRNA hydr 100.0 1.2E-69 2.6E-74 443.5 19.7 174 4-178 15-189 (190)
2 cd02406 CRS2 Chloroplast RNA s 100.0 2.4E-69 5.1E-74 444.5 21.1 177 4-180 15-191 (191)
3 TIGR00447 pth peptidyl-tRNA hy 100.0 3.3E-67 7.1E-72 431.2 21.0 173 4-177 14-188 (188)
4 PRK05426 peptidyl-tRNA hydrola 100.0 9E-66 1.9E-70 423.0 20.8 173 4-178 15-188 (189)
5 PF01195 Pept_tRNA_hydro: Pept 100.0 8.1E-66 1.8E-70 421.5 18.1 172 4-176 12-184 (184)
6 cd00462 PTH Peptidyl-tRNA hydr 100.0 6.6E-65 1.4E-69 412.1 18.9 160 4-164 12-171 (171)
7 KOG2255 Peptidyl-tRNA hydrolas 100.0 1.7E-49 3.8E-54 325.0 13.5 170 4-177 52-222 (224)
8 PF11775 CobT_C: Cobalamin bio 74.5 9.9 0.00021 32.4 6.0 88 55-149 115-205 (219)
9 TIGR01651 CobT cobaltochelatas 61.1 21 0.00045 34.7 5.8 86 56-149 496-585 (600)
10 PF06154 YagB_YeeU_YfjZ: YagB/ 57.2 22 0.00047 26.8 4.2 30 138-167 36-65 (103)
11 PF11458 Mistic: Membrane-inte 46.8 43 0.00093 24.1 4.2 25 140-164 2-26 (84)
12 PRK09256 hypothetical protein; 39.3 14 0.0003 29.2 0.8 25 78-102 3-29 (138)
13 COG4841 Uncharacterized protei 38.8 20 0.00044 26.5 1.5 23 81-103 15-40 (95)
14 COG2607 Predicted ATPase (AAA+ 38.5 20 0.00044 31.5 1.8 31 63-93 128-158 (287)
15 PF02318 FYVE_2: FYVE-type zin 38.2 64 0.0014 24.2 4.3 36 139-175 1-36 (118)
16 KOG1486 GTP-binding protein DR 36.6 1.7E+02 0.0036 26.2 7.1 71 6-78 149-219 (364)
17 PRK10870 transcriptional repre 36.4 36 0.00078 27.3 2.9 39 134-172 136-175 (176)
18 PF12920 TcdA_TcdB_pore: TcdA/ 36.3 23 0.0005 34.8 2.0 25 2-26 398-422 (663)
19 COG4547 CobT Cobalamin biosynt 35.0 73 0.0016 30.5 4.9 70 56-127 517-589 (620)
20 PRK06437 hypothetical protein; 33.9 68 0.0015 21.7 3.5 29 58-86 19-47 (67)
21 PF08282 Hydrolase_3: haloacid 33.7 39 0.00084 26.7 2.6 27 58-84 187-213 (254)
22 COG2179 Predicted hydrolase of 33.6 34 0.00073 28.2 2.2 27 58-84 95-121 (175)
23 KOG2882 p-Nitrophenyl phosphat 32.1 36 0.00077 30.4 2.3 37 44-86 218-254 (306)
24 PF05017 TMP: TMP repeat; Int 30.9 26 0.00057 15.8 0.7 8 102-109 2-9 (11)
25 PF13443 HTH_26: Cro/C1-type H 29.5 14 0.0003 24.0 -0.6 27 56-82 37-63 (63)
26 TIGR01683 thiS thiamine biosyn 29.1 92 0.002 20.5 3.5 29 58-86 12-40 (64)
27 cd00736 bacteriophage_lambda_l 28.9 91 0.002 25.0 4.0 41 136-177 81-122 (151)
28 PF11242 DUF2774: Protein of u 28.6 23 0.0005 24.4 0.4 24 53-76 7-30 (63)
29 COG2897 SseA Rhodanese-related 28.5 63 0.0014 28.5 3.2 30 53-82 69-98 (285)
30 PRK03604 moaC bifunctional mol 27.5 2.5E+02 0.0055 25.0 6.9 72 51-123 169-251 (312)
31 COG2248 Predicted hydrolase (m 27.3 1.6E+02 0.0034 26.2 5.4 52 102-159 11-62 (304)
32 PRK10513 sugar phosphate phosp 26.9 41 0.00089 27.9 1.8 26 59-84 198-223 (270)
33 PRK10976 putative hydrolase; P 26.6 44 0.00095 27.7 1.9 27 58-84 191-217 (266)
34 cd00758 MoCF_BD MoCF_BD: molyb 26.1 1E+02 0.0022 23.3 3.7 75 53-128 15-101 (133)
35 PF06342 DUF1057: Alpha/beta h 26.0 2.9E+02 0.0064 24.6 6.9 65 81-150 27-93 (297)
36 PF13873 Myb_DNA-bind_5: Myb/S 26.0 1.7E+02 0.0036 19.7 4.5 40 139-178 3-51 (78)
37 PF06466 PCAF_N: PCAF (P300/CB 25.9 53 0.0011 28.6 2.2 46 132-177 149-197 (252)
38 smart00572 DZF domain in DSRM 25.7 81 0.0018 27.3 3.4 64 102-171 174-237 (246)
39 PF12896 Apc4: Anaphase-promot 25.0 1.2E+02 0.0026 24.5 4.2 48 125-174 85-132 (210)
40 cd07018 S49_SppA_67K_type Sign 24.5 3E+02 0.0065 22.6 6.5 62 98-165 116-177 (222)
41 cd01614 EutN_CcmL Ethanolamine 24.1 1.6E+02 0.0036 21.1 4.2 46 40-99 18-63 (83)
42 TIGR00706 SppA_dom signal pept 24.0 3.3E+02 0.0071 22.1 6.6 60 98-165 100-159 (207)
43 PF13490 zf-HC2: Putative zinc 23.8 62 0.0013 18.8 1.7 22 132-153 7-28 (36)
44 PRK15126 thiamin pyrimidine py 23.5 46 0.001 27.8 1.5 27 58-84 189-215 (272)
45 PF00249 Myb_DNA-binding: Myb- 23.1 88 0.0019 19.3 2.4 17 139-155 2-18 (48)
46 TIGR01485 SPP_plant-cyano sucr 22.8 81 0.0018 26.1 2.8 28 57-84 167-194 (249)
47 KOG3186 Mitotic spindle checkp 22.8 1.6E+02 0.0034 24.6 4.3 72 104-180 59-130 (202)
48 cd08323 CARD_APAF1 Caspase act 22.6 1.6E+02 0.0035 21.2 3.9 52 132-183 18-74 (86)
49 TIGR02463 MPGP_rel mannosyl-3- 22.3 82 0.0018 25.3 2.7 26 58-83 180-205 (221)
50 COG4046 Uncharacterized protei 22.0 3.9E+02 0.0085 24.4 7.0 68 10-79 197-267 (368)
51 PF07431 DUF1512: Protein of u 21.7 4.5E+02 0.0098 24.1 7.4 68 10-79 184-254 (355)
52 COG4128 Zot Zonula occludens t 21.7 93 0.002 28.3 3.0 42 55-96 35-76 (398)
53 cd06392 PBP1_iGluR_delta_1 N-t 21.5 95 0.0021 28.4 3.1 33 46-83 116-148 (400)
54 PRK03573 transcriptional regul 21.2 1.4E+02 0.003 22.5 3.6 32 132-163 109-140 (144)
55 PRK11544 hycI hydrogenase 3 ma 21.2 4.1E+02 0.0088 20.8 6.7 81 75-167 56-146 (156)
56 PTZ00397 macrophage migration 20.9 1E+02 0.0022 22.7 2.8 19 66-84 86-104 (116)
57 cd01896 DRG The developmentall 20.9 4E+02 0.0087 22.0 6.6 86 12-119 93-178 (233)
58 TIGR00142 hycI hydrogenase mat 20.8 3.9E+02 0.0085 20.4 8.3 75 75-156 55-138 (146)
59 smart00852 MoCF_biosynth Proba 20.8 67 0.0015 24.1 1.8 78 50-127 11-99 (135)
60 PRK14690 molybdopterin biosynt 20.6 1.6E+02 0.0034 27.2 4.4 77 51-128 214-300 (419)
61 PF07352 Phage_Mu_Gam: Bacteri 20.6 49 0.0011 25.8 1.0 43 82-124 71-115 (149)
62 TIGR00854 pts-sorbose PTS syst 20.3 2.6E+02 0.0057 22.0 5.1 85 48-156 48-136 (151)
63 COG0056 AtpA F0F1-type ATP syn 20.3 87 0.0019 29.8 2.6 24 58-84 241-264 (504)
64 PRK01158 phosphoglycolate phos 20.3 65 0.0014 25.9 1.7 26 59-84 159-184 (230)
65 cd00565 ThiS ThiaminS ubiquiti 20.1 1.4E+02 0.003 19.7 3.0 30 58-87 13-42 (65)
No 1
>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-69 Score=443.47 Aligned_cols=174 Identities=37% Similarity=0.641 Sum_probs=168.0
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCc-cccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~-~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
|..|||||||+++|.||++++.++ +.+++.++++++.+.+++++|+||+||||+||++|.++++||+++|++|||||||
T Consensus 15 Y~~TRHNvGf~~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~fy~i~~~~ilVvhDd 94 (190)
T COG0193 15 YAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASFYKIKPEDILVVHDE 94 (190)
T ss_pred hcccchhHHHHHHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHHHhCCCHHHEEEEeec
Confidence 568999999999999999999998 4468999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850 83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT 162 (186)
Q Consensus 83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~ 162 (186)
||||+|++|||.+||+|||||||||+++| ||++|+|||||||||..+++|++|||++|+++|++.|+++++.++++++.
T Consensus 95 Ldl~~G~vrlk~~Gg~gGHNGlKSi~~~l-Gt~~f~RlRiGIGrP~~~~~v~~~VL~~f~~~E~~~l~~~~~~a~~~~~~ 173 (190)
T COG0193 95 LDLPLGKVRLKLGGGAGGHNGLKSIIAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEERELLDKAIDKAADALEL 173 (190)
T ss_pred cCCCCceEEEEcCCCCCCcccHHHHHHHh-CCCccceEEEEcCCCCCCCchhHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 59999999999999998889999999999999999999999999999999
Q ss_pred HHHhCHHHHHHhhhcc
Q 029850 163 LVLNGFDQNISRFNMG 178 (186)
Q Consensus 163 ~~~~~~~~~m~~~n~~ 178 (186)
++..+++++||+||+.
T Consensus 174 ~~~~~~~~~mn~~~~~ 189 (190)
T COG0193 174 LLEGDFEKAMNKLNAL 189 (190)
T ss_pred HHHHhHHHHHHHHhcc
Confidence 9999999999999975
No 2
>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast. CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).
Probab=100.00 E-value=2.4e-69 Score=444.54 Aligned_cols=177 Identities=74% Similarity=1.157 Sum_probs=168.1
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
|.+|||||||+++|.||+++++++.+.++++.+++..+.+++++|+||+||||+||++|+++++||+++++++|||||||
T Consensus 15 Y~~TRHNiGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~yki~~~~ilVihDdl 94 (191)
T cd02406 15 YKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYYKVPLRHILVIYDDM 94 (191)
T ss_pred hCcCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHHhCCCHHHEEEEEECC
Confidence 45999999999999999999998766678899999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHH
Q 029850 84 SLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTL 163 (186)
Q Consensus 84 dl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~ 163 (186)
|||+|++|+|++||++||||||||+++|++|++|+|||||||||+.+.++++|||++|+++|++.|+++++.|+++++.|
T Consensus 95 dl~~G~irlk~gGs~gGHNGlkSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~~~~a~~~~~~~ 174 (191)
T cd02406 95 SLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQIDTALEQGVDAVRTL 174 (191)
T ss_pred CCCCCeEEEcCCCCCCCcCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999995578999999999999877789999999999999999999999999999999
Q ss_pred HHhCHHHHHHhhhccCC
Q 029850 164 VLNGFDQNISRFNMGQK 180 (186)
Q Consensus 164 ~~~~~~~~m~~~n~~~~ 180 (186)
+..+++++||+||+..+
T Consensus 175 ~~~~~~~~~n~~n~~~~ 191 (191)
T cd02406 175 VLKGFNGSAERFNLVQK 191 (191)
T ss_pred HHCCHHHHHHHHhCCCC
Confidence 99999999999997643
No 3
>TIGR00447 pth peptidyl-tRNA hydrolase. The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.
Probab=100.00 E-value=3.3e-67 Score=431.19 Aligned_cols=173 Identities=36% Similarity=0.583 Sum_probs=164.5
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
|.+|||||||+++|.||++++.++.+ .++.+.+++..+.+++++|+||+||||+||++|++++++|+++++++||||||
T Consensus 14 Y~~TRHNiGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~~~~ilVihDd 93 (188)
T TIGR00447 14 YAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFYRIKPAELLVVHDE 93 (188)
T ss_pred hCcCchHHHHHHHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHhCCChHHEEEEEec
Confidence 44999999999999999999998763 46778888888999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850 83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT 162 (186)
Q Consensus 83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~ 162 (186)
||||+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.++++++.++++++.
T Consensus 94 ldl~~G~irlk~~G~~gGHNGlkSI~~~l-gt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~e~~~l~~~i~~~~~~~~~ 172 (188)
T TIGR00447 94 LDLPLGKVRLKMGGGAGGHNGLKSIISHL-GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLLEKALDKAVEALEM 172 (188)
T ss_pred CCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCcceEEEEeCCCCCCCchhhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 58999999999999987779999999999999999999999999999999
Q ss_pred HHHhC-HHHHHHhhhc
Q 029850 163 LVLNG-FDQNISRFNM 177 (186)
Q Consensus 163 ~~~~~-~~~~m~~~n~ 177 (186)
|+.++ ++++||+||+
T Consensus 173 ~~~~~~~~~~~n~~n~ 188 (188)
T TIGR00447 173 SFSEGAFLKAMNRFNS 188 (188)
T ss_pred HHHCCCHHHHHHHhhC
Confidence 99999 9999999995
No 4
>PRK05426 peptidyl-tRNA hydrolase; Provisional
Probab=100.00 E-value=9e-66 Score=423.01 Aligned_cols=173 Identities=39% Similarity=0.678 Sum_probs=163.8
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
+.+|||||||+++|.||++++..+. .+++.+.+++..+++++++|+||+||||+||++|++++++|++++++++|||||
T Consensus 15 Y~~TRHNvGf~~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~~~~ilVihDd 94 (189)
T PRK05426 15 YANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANFYKIPPEDILVIHDD 94 (189)
T ss_pred hCcCchHHHHHHHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHhCCCHHHEEEEEec
Confidence 4599999999999999999987665 346779999999998999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850 83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT 162 (186)
Q Consensus 83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~ 162 (186)
||+|+|++|+|.+||++||||||||+++| +|++|+|||||||||+ +.++++|||++|+++|++.++++++.|+++++.
T Consensus 95 ldl~~G~~r~k~gGs~~GHNGlkSI~~~l-gt~~f~RlriGIGrP~-~~~v~~yVL~~f~~~E~~~l~~~~~~a~~~v~~ 172 (189)
T PRK05426 95 LDLPPGKIRLKKGGGAGGHNGLKSIIAHL-GTQDFWRLRIGIGRPD-KKKVVDYVLGKFSKEEQELLDKAIDKAADAIEL 172 (189)
T ss_pred CCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeeEEEEEeCCCC-CCCcchhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 5889999999999997 567999999999999999999999999999999
Q ss_pred HHHhCHHHHHHhhhcc
Q 029850 163 LVLNGFDQNISRFNMG 178 (186)
Q Consensus 163 ~~~~~~~~~m~~~n~~ 178 (186)
|+..+++++||+||+.
T Consensus 173 ~~~~~~~~~~~~~n~~ 188 (189)
T PRK05426 173 LLEGGFEKAMNKFNSK 188 (189)
T ss_pred HHHCCHHHHHHHHhCC
Confidence 9999999999999974
No 5
>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3.1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....
Probab=100.00 E-value=8.1e-66 Score=421.48 Aligned_cols=172 Identities=42% Similarity=0.736 Sum_probs=155.2
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
+.+|||||||+++|.||++++.+|... ++.+.++.+.+.+++++|+||+||||+||++|++++++|+++++++||||||
T Consensus 12 Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVihDd 91 (184)
T PF01195_consen 12 YENTRHNVGFMVLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYKIPPENILVIHDD 91 (184)
T ss_dssp TTTSGGGHHHHHHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT--GGGEEEEEEE
T ss_pred hcCCCcCchHHHHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhCCCcceEEEEEec
Confidence 579999999999999999999988665 4789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850 83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT 162 (186)
Q Consensus 83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~ 162 (186)
+|+|+|++|+|++||++||||||||+++| +|++|+|||||||||+++.++++|||++|+++|++.|+++++.|+++++.
T Consensus 92 ldl~~G~irlk~~Gs~~GHNGlkSI~~~L-gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~~~~a~~~l~~ 170 (184)
T PF01195_consen 92 LDLPLGKIRLKKGGSSGGHNGLKSIIQHL-GTEDFPRLRIGIGRPPSKEDVADYVLSKFSPEERELLDKVIPQAAEALEQ 170 (184)
T ss_dssp TTSSTTEEEEEESS--TT-HHHHHHHHHC-TSSGSEEEEEEE--TSTTSGHHHHHTSB-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEccCCCCCCCCCHHHHHHHh-ccccceeEEEecCCCCCcchHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 58999999999999998889999999999999999999999999999999
Q ss_pred HHHhCHHHHHHhhh
Q 029850 163 LVLNGFDQNISRFN 176 (186)
Q Consensus 163 ~~~~~~~~~m~~~n 176 (186)
|++++++++||+||
T Consensus 171 ~i~~~~~~~mn~~n 184 (184)
T PF01195_consen 171 IIEGGFEKAMNKFN 184 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHhC
Confidence 99999999999998
No 6
>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.
Probab=100.00 E-value=6.6e-65 Score=412.10 Aligned_cols=160 Identities=45% Similarity=0.786 Sum_probs=152.7
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
|.+|||||||+++|+||++++.+|.+.++.+.+++..+.+++++|+||+||||+||++|++++++|+++++++|||||||
T Consensus 12 Y~~TRHNvGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~~~~ilVihDdl 91 (171)
T cd00462 12 YENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIPPEDILVIHDDL 91 (171)
T ss_pred cCcCchHHHHHHHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCCChhHEEEEEecC
Confidence 45999999999999999999998877677899999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHH
Q 029850 84 SLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTL 163 (186)
Q Consensus 84 dl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~ 163 (186)
|||+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|+++++.++++++.+
T Consensus 92 dl~~G~vrlk~~G~~gGHNGlkSI~~~l-gt~~f~RlriGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~~~~~~~~~~~~ 170 (171)
T cd00462 92 DLPLGKIRLKKGGGSGGHNGLKSIIAHL-GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEAIEKAADALEDI 170 (171)
T ss_pred CCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCChhhhhcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 589999999999999887899999999999999999999999999999876
Q ss_pred H
Q 029850 164 V 164 (186)
Q Consensus 164 ~ 164 (186)
+
T Consensus 171 ~ 171 (171)
T cd00462 171 L 171 (171)
T ss_pred C
Confidence 3
No 7
>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-49 Score=324.97 Aligned_cols=170 Identities=57% Similarity=0.949 Sum_probs=151.7
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
+++|||||||.++|.||+++|++..+.+.++..+.+.+++..++|++|++|||.||++|.+++..|+++.++++||||||
T Consensus 52 y~gTRHnvG~~Ml~~larrlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y~i~~~~ivvIhDEl 131 (224)
T KOG2255|consen 52 YVGTRHNVGFEMLDMLARRLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALYKIPLRHIVVIHDEL 131 (224)
T ss_pred ccccchhhHHHHHHHHHHHhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhhcchheeEEEEeccc
Confidence 58999999999999999999987655555667777788889999999999999999999999999999999999999999
Q ss_pred CCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHH-HHHHHHHHHHHHHHH
Q 029850 84 SLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE-QIDAALEQGVEAVRT 162 (186)
Q Consensus 84 dl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~-~l~~~~~~a~~~~~~ 162 (186)
++|+|++|+|++||++||||+||++.++++...|+||+||||||+.++++.+|||++|++.|++ .|+..+ +.++.
T Consensus 132 ~l~~Gkl~Lrp~gs~rgHNGvrs~~~~l~g~~~fpRL~iGIGrppg~~d~~a~vLskfsp~e~ke~Let~l----~~~~~ 207 (224)
T KOG2255|consen 132 ELPLGKLRLRPGGSHRGHNGVRSVFNCLNGRRSFPRLSIGIGRPPGNEDVKAFVLSKFSPAEQKELLETLL----EHVKT 207 (224)
T ss_pred cCcCceEEeccCCCccccccHHHHHhhccCCcccceeeeecCCCCCchhhhHHHHHhcChhhhHHHHHHHH----hhhHH
Confidence 9999999999999999999999999999877799999999999999999999999999999998 555444 44555
Q ss_pred HHHhCHHHHHHhhhc
Q 029850 163 LVLNGFDQNISRFNM 177 (186)
Q Consensus 163 ~~~~~~~~~m~~~n~ 177 (186)
++.++++.-.++||.
T Consensus 208 lil~~l~~~is~~~l 222 (224)
T KOG2255|consen 208 LILQGLQQSISRFNL 222 (224)
T ss_pred HHHHHHHHhcccCcC
Confidence 566677777777774
No 8
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=74.47 E-value=9.9 Score=32.36 Aligned_cols=88 Identities=20% Similarity=0.293 Sum_probs=49.5
Q ss_pred cccchhhHHHHHHHcCCCCC--c-EEEEeeccCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCC
Q 029850 55 MNFSGESVGPLAAHYQVPLR--H-ILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKM 131 (186)
Q Consensus 55 MN~SG~~V~~~~~~~~i~~~--~-ilVvhDdldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~ 131 (186)
=|..|+++..+.+.+.-.++ + ++||.|= -|...-.+...++.-=.+=||.+++......+.-=+.||||.
T Consensus 115 eniDGeAl~~a~~rL~~r~e~rkiLiViSDG--~P~d~st~~~n~~~~L~~HLr~vi~~ie~~~~Vel~aiGIg~----- 187 (219)
T PF11775_consen 115 ENIDGEALRWAAERLLARPEQRKILIVISDG--APADDSTLSANDGDYLDAHLRQVIAEIETRSDVELIAIGIGH----- 187 (219)
T ss_pred cCCcHHHHHHHHHHHHcCCccceEEEEEeCC--CcCcccccccCChHHHHHHHHHHHHHHhccCCcEEEEEEcCC-----
Confidence 48999999988876543333 3 5566663 233322222223222234578888888433456678999986
Q ss_pred cchhhcccCCCHHHHHHH
Q 029850 132 DMKAYLLQKFSPIEREQI 149 (186)
Q Consensus 132 ~v~~yVL~~fs~~E~~~l 149 (186)
++..|==....-...+.|
T Consensus 188 D~~~yY~~~~~i~~~e~l 205 (219)
T PF11775_consen 188 DVSRYYRRAVTIDDVEEL 205 (219)
T ss_pred CchhhcccceecCCHHHH
Confidence 344454334433444444
No 9
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=61.15 E-value=21 Score=34.73 Aligned_cols=86 Identities=20% Similarity=0.305 Sum_probs=52.8
Q ss_pred ccchhhHHHHHHHcCCCCCc---EEEEeeccCCCCceEEEccCCCCCCCCcHHHHHHhhcCCC-CcceEEEeecCCCCCC
Q 029850 56 NFSGESVGPLAAHYQVPLRH---ILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCR-EFPRLCIGIGNPPGKM 131 (186)
Q Consensus 56 N~SG~~V~~~~~~~~i~~~~---ilVvhDdldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~-~f~RlrIGIGrP~~~~ 131 (186)
|..|.+|..+...+--.++. +|||.|=- |...-.+....+.-=++=||.+|+... +. ..-=+.||||..
T Consensus 496 N~DGeAl~wa~~rL~~R~e~rKiL~ViSDG~--P~D~~TlsvN~~~~l~~hLr~vi~~~e-~~~~vel~aigIg~D---- 568 (600)
T TIGR01651 496 NIDGEALMWAHQRLIARPEQRRILMMISDGA--PVDDSTLSVNPGNYLERHLRAVIEEIE-TRSPVELLAIGIGHD---- 568 (600)
T ss_pred CCchHHHHHHHHHHhcCcccceEEEEEeCCC--cCCccccccCchhHHHHHHHHHHHHHh-ccCCceEEEeecccc----
Confidence 88899999888776544442 66777743 332222233333333555999999984 43 576799999963
Q ss_pred cchhhcccCCCHHHHHHH
Q 029850 132 DMKAYLLQKFSPIEREQI 149 (186)
Q Consensus 132 ~v~~yVL~~fs~~E~~~l 149 (186)
|..|-=.-++-...+.|
T Consensus 569 -v~r~Y~~~v~i~~~~eL 585 (600)
T TIGR01651 569 -VTRYYRRAVTIVDAEEL 585 (600)
T ss_pred -HHHHccccceecCHHHH
Confidence 55555444444444444
No 10
>PF06154 YagB_YeeU_YfjZ: YagB/YeeU/YfjZ family; InterPro: IPR009320 This family of proteins includes three proteins from Escherichia coli proteins YagB, YeeU and YfjZ. The function of these proteins is unknown. They are about 120 amino acids in length.; PDB: 2H28_A 2INW_B 2JN7_A 2EA9_A.
Probab=57.18 E-value=22 Score=26.80 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=23.2
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 029850 138 LQKFSPIEREQIDAALEQGVEAVRTLVLNG 167 (186)
Q Consensus 138 L~~fs~~E~~~l~~~~~~a~~~~~~~~~~~ 167 (186)
-+.||++|...|+++++...+-++.++..|
T Consensus 36 ~G~Fs~~~~~~Ld~aFP~~ikqlE~ml~sG 65 (103)
T PF06154_consen 36 TGTFSEEEAQHLDQAFPLFIKQLELMLTSG 65 (103)
T ss_dssp ES---HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEcCHHHHHHHHhHhHHHHHHHHHHHhcC
Confidence 389999999999999999988888887643
No 11
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=46.82 E-value=43 Score=24.08 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 029850 140 KFSPIEREQIDAALEQGVEAVRTLV 164 (186)
Q Consensus 140 ~fs~~E~~~l~~~~~~a~~~~~~~~ 164 (186)
+.+.+|++.|..+|++..+.+..|+
T Consensus 2 KVt~~EkeQLS~AID~mnEGLD~fI 26 (84)
T PF11458_consen 2 KVTDQEKEQLSTAIDRMNEGLDTFI 26 (84)
T ss_pred CCchHHHHHHHHHHHHHHhhHHHHH
Confidence 4578899999999988777555554
No 12
>PRK09256 hypothetical protein; Provisional
Probab=39.32 E-value=14 Score=29.17 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=20.5
Q ss_pred EEeeccCCCCceEEEc--cCCCCCCCC
Q 029850 78 VIYDEMSLMNGVLRLQ--PKGGHGHHN 102 (186)
Q Consensus 78 VvhDdldl~~G~irlk--~~Gs~~GHN 102 (186)
-|.+++++|...++++ .++|.||.|
T Consensus 3 ~~~~~~~i~~~~l~~~~~RSSGPGGQ~ 29 (138)
T PRK09256 3 RITRRLVIPENELEWRFIRASGPGGQN 29 (138)
T ss_pred ccCccCccCHHHeEEEEEEcCCCCccc
Confidence 3678899998888775 688999988
No 13
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.80 E-value=20 Score=26.52 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=18.7
Q ss_pred eccCCCCce-EEE--ccCCCCCCCCc
Q 029850 81 DEMSLMNGV-LRL--QPKGGHGHHNG 103 (186)
Q Consensus 81 Ddldl~~G~-irl--k~~Gs~~GHNG 103 (186)
||++|+-|. ||+ |.||.+.+|-|
T Consensus 15 ~E~~l~~g~~vrffvRyGG~~~~~~G 40 (95)
T COG4841 15 EELDLEEGNKVRFFVRYGGCSSLQQG 40 (95)
T ss_pred HhcCCCCCCEEEEEEEEcCcccccCC
Confidence 999999984 665 78998877776
No 14
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=38.48 E-value=20 Score=31.49 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=25.1
Q ss_pred HHHHHHcCCCCCcEEEEeeccCCCCceEEEc
Q 029850 63 GPLAAHYQVPLRHILVIYDEMSLMNGVLRLQ 93 (186)
Q Consensus 63 ~~~~~~~~i~~~~ilVvhDdldl~~G~irlk 93 (186)
..++...+..++.+||++|||..+-|.-..|
T Consensus 128 p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK 158 (287)
T COG2607 128 PDLVELLRARPEKFILFCDDLSFEEGDDAYK 158 (287)
T ss_pred HHHHHHHhcCCceEEEEecCCCCCCCchHHH
Confidence 4556666777899999999999999887655
No 15
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=38.19 E-value=64 Score=24.24 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=24.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhh
Q 029850 139 QKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRF 175 (186)
Q Consensus 139 ~~fs~~E~~~l~~~~~~a~~~~~~~~~~~~~~~m~~~ 175 (186)
|.++++|++.|.+++.++.+ ++..-++.+.+..+++
T Consensus 1 s~Lt~eE~~~I~~Vl~R~~~-l~~~E~~Ri~kLk~~L 36 (118)
T PF02318_consen 1 SHLTEEEREIILQVLQRDEE-LRKKEEERIRKLKQEL 36 (118)
T ss_dssp TTS-CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHH
Confidence 56789999999999999766 4444444454444444
No 16
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=36.57 E-value=1.7e+02 Score=26.23 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=55.3
Q ss_pred CCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEE
Q 029850 6 IISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILV 78 (186)
Q Consensus 6 ~TRHNvGf~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilV 78 (186)
.|+|+.--..++.=.+..|+..++.+.+-++..-..+|-++-.--|.|-||. +.+..++..|+|.-.++++
T Consensus 149 atk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~e--k~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 149 ATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDE--KLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred CCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccH--HHHHHHHHHHeeccceEEE
Confidence 5788888888888888889998877766666555667777888889887764 7788999999997766665
No 17
>PRK10870 transcriptional repressor MprA; Provisional
Probab=36.42 E-value=36 Score=27.29 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=30.2
Q ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHH
Q 029850 134 KAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNG-FDQNI 172 (186)
Q Consensus 134 ~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~~~~~-~~~~m 172 (186)
.+-+++.|+++|++.+..++.+..+.++.+-.+| +-++|
T Consensus 136 ~~~~~~~ls~~e~~~l~~~L~kl~~~l~~~~~~~~~~~~~ 175 (176)
T PRK10870 136 LHQLWSALSTTEKDQLEQITRKLLSRLDQMEQDGVVLEAM 175 (176)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhhCCCchhhhhc
Confidence 3557899999999999999888888887766544 55555
No 18
>PF12920 TcdA_TcdB_pore: TcdA/TcdB pore forming domain; InterPro: IPR024769 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins. These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents the pore forming domain of TcdA and TcdB. It is also found in other toxins. ; GO: 0009405 pathogenesis
Probab=36.34 E-value=23 Score=34.83 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=21.6
Q ss_pred CCCCCCchhHHHHHHHHHHHHcCCC
Q 029850 2 ALGTIISCQVGFEMIDHIAQAQRIA 26 (186)
Q Consensus 2 ~~~~~TRHNvGf~~ld~la~~~~~~ 26 (186)
-||..||||-||.++++|.+.....
T Consensus 398 ~pg~t~r~d~gfd~Lrrle~~~~F~ 422 (663)
T PF12920_consen 398 LPGATTRHDSGFDVLRRLEEDYRFD 422 (663)
T ss_pred ccCCcccCCcHHHHHHHHhhcCCCc
Confidence 4789999999999999999987533
No 19
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=34.96 E-value=73 Score=30.50 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=49.1
Q ss_pred ccchhhHHHHHHHcCCCCCc---EEEEeeccCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCC
Q 029850 56 NFSGESVGPLAAHYQVPLRH---ILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNP 127 (186)
Q Consensus 56 N~SG~~V~~~~~~~~i~~~~---ilVvhDdldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP 127 (186)
|..|+++.++.+.+--.|++ ++||.|-. |+-.-.|....|+.=|.=||-+|..+-..+..--+.||||+.
T Consensus 517 NiDGEal~wah~rl~gRpEqrkIlmmiSDGA--PvddstlsvnpGnylerHLRaVieeIEtrSpveLlAIGighD 589 (620)
T COG4547 517 NIDGEALMWAHQRLIGRPEQRKILMMISDGA--PVDDSTLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGHD 589 (620)
T ss_pred cCChHHHHHHHHHHhcChhhceEEEEecCCC--cccccccccCCchHHHHHHHHHHHHHhcCCchhheeeecccc
Confidence 89999998887765444443 67787754 444444445555666777899999885445677799999974
No 20
>PRK06437 hypothetical protein; Provisional
Probab=33.91 E-value=68 Score=21.72 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=24.8
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeeccCCC
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEMSLM 86 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdldl~ 86 (186)
.|.+|+.+++.++++++.+.|.++.--+|
T Consensus 19 ~~~tv~dLL~~Lgi~~~~vaV~vNg~iv~ 47 (67)
T PRK06437 19 HELTVNDIIKDLGLDEEEYVVIVNGSPVL 47 (67)
T ss_pred CCCcHHHHHHHcCCCCccEEEEECCEECC
Confidence 45679999999999999999998877766
No 21
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=33.67 E-value=39 Score=26.74 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=24.0
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeeccC
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEMS 84 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdld 84 (186)
=|.+++.+++.+++++++++++=|+..
T Consensus 187 K~~ai~~l~~~~~i~~~~~~~~GD~~N 213 (254)
T PF08282_consen 187 KGSAIKYLLEYLGISPEDIIAFGDSEN 213 (254)
T ss_dssp HHHHHHHHHHHHTTSGGGEEEEESSGG
T ss_pred HHHHHHHHhhhcccccceeEEeecccc
Confidence 378889999999999999999999765
No 22
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=33.58 E-value=34 Score=28.22 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=24.6
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeeccC
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEMS 84 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdld 84 (186)
++.++.++++.++++++++++|-|.|=
T Consensus 95 ~~~~fr~Al~~m~l~~~~vvmVGDqL~ 121 (175)
T COG2179 95 FGRAFRRALKEMNLPPEEVVMVGDQLF 121 (175)
T ss_pred cHHHHHHHHHHcCCChhHEEEEcchhh
Confidence 678899999999999999999999885
No 23
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=32.08 E-value=36 Score=30.44 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=31.0
Q ss_pred eeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeeccCCC
Q 029850 44 VPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLM 86 (186)
Q Consensus 44 ~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdldl~ 86 (186)
+.+++=||.++|= ..+++.|++.|++.+.|-|-||-+
T Consensus 218 ~P~v~GKP~~~m~------~~l~~~~~i~psRt~mvGDRL~TD 254 (306)
T KOG2882|consen 218 QPIVLGKPSTFMF------EYLLEKFNIDPSRTCMVGDRLDTD 254 (306)
T ss_pred CCeecCCCCHHHH------HHHHHHcCCCcceEEEEcccchhh
Confidence 5688999999983 356789999999999999988754
No 24
>PF05017 TMP: TMP repeat; InterPro: IPR007713 This short repeat consists of the motif WXXh where X can be any residue and h is a hydrophobic residue. The repeat is named TMP after its occurrence in the tape measure protein (TMP). Tape measure protein is a component of phage tail and probably forms a beta-helix. Truncated forms of TMP lead to shortened tail fibres []. This repeat is also found in non-phage proteins where it may play a structural role.
Probab=30.87 E-value=26 Score=15.82 Aligned_cols=8 Identities=50% Similarity=0.883 Sum_probs=6.0
Q ss_pred CcHHHHHH
Q 029850 102 NGLKSVMN 109 (186)
Q Consensus 102 NGLkSI~~ 109 (186)
||||++..
T Consensus 2 n~Ik~~~s 9 (11)
T PF05017_consen 2 NGIKSFFS 9 (11)
T ss_pred chHHHHhh
Confidence 78888764
No 25
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=29.52 E-value=14 Score=24.03 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=18.4
Q ss_pred ccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850 56 NFSGESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 56 N~SG~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
+.|-..+..+++++++++++++...+|
T Consensus 37 ~~~~~~l~~ia~~l~~~~~el~~~~~d 63 (63)
T PF13443_consen 37 NPSLDTLEKIAKALNCSPEELFEYEPD 63 (63)
T ss_dssp ---HHHHHHHHHHHT--HHHCTECCE-
T ss_pred cccHHHHHHHHHHcCCCHHHHhhcCCC
Confidence 556688899999999999999887665
No 26
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=29.11 E-value=92 Score=20.53 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=23.7
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeeccCCC
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEMSLM 86 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdldl~ 86 (186)
+|.+|..+++.++++++.+.|.++.--+|
T Consensus 12 ~~~tv~~ll~~l~~~~~~v~v~vN~~iv~ 40 (64)
T TIGR01683 12 DGLTLAALLESLGLDPRRVAVAVNGEIVP 40 (64)
T ss_pred CCCcHHHHHHHcCCCCCeEEEEECCEEcC
Confidence 35679999999999999888888776655
No 27
>cd00736 bacteriophage_lambda_lysozyme The lysozyme from bacteriophage lambda hydrolyses the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc), as do other lysozymes. But unlike other lysozymes, bacteriophage lambda does not produce a reducing end upon cleavage of the peptidoglycan but rather uses the 6-OH of the same MurNAc residue to produce a 1,6-anhydromuramic acid terminal residue and is therefore a lytic transglycosylase. An identical 1,6-anhydro bond is formed in bacterial peptidoglycans by the action of the lytic transglycosylases of E. coli. However, they differ structurally.
Probab=28.87 E-value=91 Score=25.02 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=30.1
Q ss_pred hcccCCCHHHHHHHH-HHHHHHHHHHHHHHHhCHHHHHHhhhc
Q 029850 136 YLLQKFSPIEREQID-AALEQGVEAVRTLVLNGFDQNISRFNM 177 (186)
Q Consensus 136 yVL~~fs~~E~~~l~-~~~~~a~~~~~~~~~~~~~~~m~~~n~ 177 (186)
+=|..|+|+.++.+- ..+.. ..++..+.+..++.+|+++..
T Consensus 81 ~gl~~F~P~~QD~~A~~Li~~-~gal~~i~~G~~~~a~~~La~ 122 (151)
T cd00736 81 YGLYDFSPESQDLVAYQLIRE-RGALPDILAGRIEQAIAKLSN 122 (151)
T ss_pred cCCCCCCHHHHHHHHHHHHHH-cCcHHHHHcCCHHHHHHHHHh
Confidence 335899999999885 34443 447888888789999988763
No 28
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=28.60 E-value=23 Score=24.44 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.8
Q ss_pred CccccchhhHHHHHHHcCCCCCcE
Q 029850 53 AYMNFSGESVGPLAAHYQVPLRHI 76 (186)
Q Consensus 53 TyMN~SG~~V~~~~~~~~i~~~~i 76 (186)
-||..||.+..+|++.++|.+.+.
T Consensus 7 hflhE~g~~FveIAr~~~i~a~e~ 30 (63)
T PF11242_consen 7 HFLHESGLSFVEIARKIGITAKEV 30 (63)
T ss_pred hhHHHcCCcHHHHHHHhCCCHHHH
Confidence 378999999999999999988764
No 29
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=28.53 E-value=63 Score=28.47 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=27.4
Q ss_pred CccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850 53 AYMNFSGESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 53 TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
.=|=.|.+...+++...+|..++.+|||||
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd 98 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDD 98 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECC
Confidence 567778899999999999999999999999
No 30
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=27.46 E-value=2.5e+02 Score=24.95 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=55.0
Q ss_pred CCCccccchhhHHHHHHHcCCCCCcEEEEeeccC--------C--CCceEEEccCC-CCCCCCcHHHHHHhhcCCCCcce
Q 029850 51 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMS--------L--MNGVLRLQPKG-GHGHHNGLKSVMNHLDGCREFPR 119 (186)
Q Consensus 51 P~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdld--------l--~~G~irlk~~G-s~~GHNGLkSI~~~lg~t~~f~R 119 (186)
+...=|.+|..++.+++.++......-++-||.+ + .--.+-|-.|| |.+-..=....++.++ ..+|++
T Consensus 169 ~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~~D~tpeAl~~lg-~~~~~G 247 (312)
T PRK03604 169 AGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGPRDVTPEALAPLL-ERRLPG 247 (312)
T ss_pred CCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCCCccHHHHHHHhc-Cccccc
Confidence 3445699999999999999998888889999987 2 22356666777 5566667788888885 678888
Q ss_pred EEEe
Q 029850 120 LCIG 123 (186)
Q Consensus 120 lrIG 123 (186)
++..
T Consensus 248 vae~ 251 (312)
T PRK03604 248 IAEA 251 (312)
T ss_pred hHHH
Confidence 7754
No 31
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=27.35 E-value=1.6e+02 Score=26.18 Aligned_cols=52 Identities=21% Similarity=0.119 Sum_probs=34.5
Q ss_pred CcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHH
Q 029850 102 NGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEA 159 (186)
Q Consensus 102 NGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~ 159 (186)
-|+||+..-+ .| .-++|.|.. .-.-....|=| +..+.|.+.+.++-+.+.+.
T Consensus 11 LGVRSmAt~v-et---~dv~ILiDp-GVsLaPkRy~L-PPh~~E~erl~~~r~~i~~~ 62 (304)
T COG2248 11 LGVRSMATFV-ET---KDVGILIDP-GVSLAPKRYGL-PPHQRELERLRQAREKIQRY 62 (304)
T ss_pred cchhhhhhee-ec---CCeeEEECC-ccccCccccCC-CCCHHHHHHHHHHHHHHHHH
Confidence 4789997777 35 457888873 32234457776 56788888887766655443
No 32
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=26.91 E-value=41 Score=27.91 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.5
Q ss_pred hhhHHHHHHHcCCCCCcEEEEeeccC
Q 029850 59 GESVGPLAAHYQVPLRHILVIYDEMS 84 (186)
Q Consensus 59 G~~V~~~~~~~~i~~~~ilVvhDdld 84 (186)
|.+++.+++.+++++++++++=|..+
T Consensus 198 g~al~~l~~~~gi~~~~v~afGD~~N 223 (270)
T PRK10513 198 GTGVKSLAEHLGIKPEEVMAIGDQEN 223 (270)
T ss_pred HHHHHHHHHHhCCCHHHEEEECCchh
Confidence 78899999999999999999998764
No 33
>PRK10976 putative hydrolase; Provisional
Probab=26.58 E-value=44 Score=27.72 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=23.9
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeeccC
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEMS 84 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdld 84 (186)
-|.+++.+++++++++++++++=|..+
T Consensus 191 Kg~al~~l~~~lgi~~~~viafGD~~N 217 (266)
T PRK10976 191 KGHALEAVAKKLGYSLKDCIAFGDGMN 217 (266)
T ss_pred hHHHHHHHHHHcCCCHHHeEEEcCCcc
Confidence 388999999999999999999998654
No 34
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=26.11 E-value=1e+02 Score=23.29 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=55.5
Q ss_pred CccccchhhHHHHHHHcCCCCCcEEEEeeccC---------CCCceEEEccCC-CCCCCCcHHHHHHhhcCCCCcc--eE
Q 029850 53 AYMNFSGESVGPLAAHYQVPLRHILVIYDEMS---------LMNGVLRLQPKG-GHGHHNGLKSVMNHLDGCREFP--RL 120 (186)
Q Consensus 53 TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdld---------l~~G~irlk~~G-s~~GHNGLkSI~~~lg~t~~f~--Rl 120 (186)
.--|.++..++.+++.++......-++.||.+ +.--.+=+-.|| |.+-+.=....++.++ ...|. ++
T Consensus 15 ~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g~~D~t~~ai~~~g-~~~~~g~~~ 93 (133)
T cd00758 15 QIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVGRRDVTPEALAELG-EREAHGKGV 93 (133)
T ss_pred ceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCCcchHHHHHHhc-CEEeccCcc
Confidence 33488999999999999988777778889854 112456666777 4556667788888885 57888 88
Q ss_pred EEeecCCC
Q 029850 121 CIGIGNPP 128 (186)
Q Consensus 121 rIGIGrP~ 128 (186)
.+-.|+|.
T Consensus 94 ~~~pg~~~ 101 (133)
T cd00758 94 ALAPGSRT 101 (133)
T ss_pred cccCCCce
Confidence 88888774
No 35
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=25.97 E-value=2.9e+02 Score=24.63 Aligned_cols=65 Identities=28% Similarity=0.334 Sum_probs=45.2
Q ss_pred eccCCC--CceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHH
Q 029850 81 DEMSLM--NGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID 150 (186)
Q Consensus 81 Ddldl~--~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~ 150 (186)
|++.-. +|.| +-..||.|-||-.|=|...|. +.=.|+ |||--|... .+..|--..++.+|+...-
T Consensus 27 D~~~~gs~~gTV-v~~hGsPGSH~DFkYi~~~l~--~~~iR~-I~iN~PGf~-~t~~~~~~~~~n~er~~~~ 93 (297)
T PF06342_consen 27 DSLPSGSPLGTV-VAFHGSPGSHNDFKYIRPPLD--EAGIRF-IGINYPGFG-FTPGYPDQQYTNEERQNFV 93 (297)
T ss_pred ecCCCCCCceeE-EEecCCCCCccchhhhhhHHH--HcCeEE-EEeCCCCCC-CCCCCcccccChHHHHHHH
Confidence 655433 5533 568999999999999999983 222343 788778653 5556666778888887663
No 36
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=25.96 E-value=1.7e+02 Score=19.74 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=25.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHH---------HHHhCHHHHHHhhhcc
Q 029850 139 QKFSPIEREQIDAALEQGVEAVRT---------LVLNGFDQNISRFNMG 178 (186)
Q Consensus 139 ~~fs~~E~~~l~~~~~~a~~~~~~---------~~~~~~~~~m~~~n~~ 178 (186)
.+||++|.+.|-+.+..-.+.++. .-..-.+...+.||+.
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~ 51 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNAL 51 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999987777665555533 1123466666667753
No 37
>PF06466 PCAF_N: PCAF (P300/CBP-associated factor) N-terminal domain; InterPro: IPR009464 This region is spliced out of Q92830 from SWISSPROT isoform 2. It is predicted to be of a mixed alpha/beta fold - though predominantly helical.; GO: 0004402 histone acetyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.87 E-value=53 Score=28.60 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=28.1
Q ss_pred cchhhcccCCC---HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhc
Q 029850 132 DMKAYLLQKFS---PIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNM 177 (186)
Q Consensus 132 ~v~~yVL~~fs---~~E~~~l~~~~~~a~~~~~~~~~~~~~~~m~~~n~ 177 (186)
.|..||+.+|+ +.|.+.+-++.....-.+..|--+..+.-.+..+.
T Consensus 149 ~V~nfv~~kf~~l~~~E~q~m~elakmFL~~lN~W~le~ps~~~~~~~~ 197 (252)
T PF06466_consen 149 AVTNFVLYKFSHLPQKEWQTMYELAKMFLHCLNHWKLEAPSQRRQRSNA 197 (252)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHhhccCCChHHHHhhcCc
Confidence 34688998885 66777775554444445555554566555555544
No 38
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=25.73 E-value=81 Score=27.33 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=44.5
Q ss_pred CcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Q 029850 102 NGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 171 (186)
Q Consensus 102 NGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~~~~~~~~~ 171 (186)
-.+|.+.+.+. +..|.-=..||--|-+++ ..+ |++.+|.+|++.| ...|.++++.+..+++-+.
T Consensus 174 ~a~RR~fe~lA-sG~l~p~~~gI~DPce~~-~~n-v~~~lT~qqrd~I---t~sAQ~alRl~Afgq~~kv 237 (246)
T smart00572 174 DAFRRVFECLA-SGILLPGSPGLTDPCEKD-NTD-ALTALTLQQREDV---TASAQTALRLLAFGQIHKI 237 (246)
T ss_pred HHHHHHHHHHH-hccCcCCCCCCcCCCCCC-ccc-HHHhcCHHHHHHH---HHHHHHHHHHHHhcchhee
Confidence 35888888884 445532246777776543 233 9999999999887 6777888888876655443
No 39
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=25.02 E-value=1.2e+02 Score=24.47 Aligned_cols=48 Identities=15% Similarity=0.368 Sum_probs=37.9
Q ss_pred cCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHh
Q 029850 125 GNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISR 174 (186)
Q Consensus 125 GrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~~~~~~~~~m~~ 174 (186)
|.++ ..+.+|....+++.-..++++.++.+.+.++.++...+.-|+.+
T Consensus 85 G~~s--~~l~~fL~~~l~erglKr~~k~~~~~y~~i~~l~~~~l~pa~er 132 (210)
T PF12896_consen 85 GHAS--PALKQFLVNQLGERGLKRWEKAVDSAYSSIRKLLFEHLIPALER 132 (210)
T ss_pred cCCC--HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 37789999999999999999999999998888887655555543
No 40
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=24.46 E-value=3e+02 Score=22.62 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=43.5
Q ss_pred CCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029850 98 HGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVL 165 (186)
Q Consensus 98 ~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~~~ 165 (186)
...|--+|...+.+| -++.-++.| . . +.....|...++|+++++.++..++...+.....+.
T Consensus 116 ~~~~~~~~~ll~klG--v~~~~~~~G--~-~-K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va 177 (222)
T cd07018 116 SAETLFFKGLLDKLG--VEVQVFRVG--E-Y-KSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVA 177 (222)
T ss_pred chhhhhHHHHHHHcC--CcEEEEEEe--c-c-ccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888884 456566654 2 2 234567777889999999999888887765555443
No 41
>cd01614 EutN_CcmL Ethanolamine utilisation protein and carboxysome structural protein domain family. Beside the Escherichia coli ethanolamine utilization protein EutN and the Synechocystis sp. carboxysome (beta-type) structural protein CcmL, this family also includes alpha-type carboxysome structural proteins CsoS4A and CsoS4B (previously known as OrfA and OrfB), propanediol utilizationprotein PduN, and some hypothetical homologous of various bacterial microcompartments. The carboxysome, a polyhedral organelle, participates in carbon fixation by sequestering enzymes. It is the prototypical bacterial microcompartment. Its enzymatic components, ribulose bisphosphate carboxylase/oxygenase(RuBisCO) and carbonic anhydrase (CA), are surrounded by a polyhedral protein shell. Similarly, the ethanolamine utilization (eut) microcompartment, and the 1,2-propanediol utilization (pdu) microcompartment encapsulate the enzymes necessary for the process of cobalamin-dependent ethanolamine degradation,
Probab=24.09 E-value=1.6e+02 Score=21.13 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=35.9
Q ss_pred EECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeeccCCCCceEEEccCCCCC
Q 029850 40 SIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHG 99 (186)
Q Consensus 40 ~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdldl~~G~irlk~~Gs~~ 99 (186)
.+.+.++++++|. +..|+ +..+.+|..|.+.--.|..-+-..||+.
T Consensus 18 ~L~G~kLliVq~~---~~~~~-----------~~g~~~VA~D~vGAG~Ge~Vlv~~Gs~A 63 (83)
T cd01614 18 SLAGKKLLVVQPL---DGEGK-----------PKGEPLVAVDPVGAGVGEWVLVATGSAA 63 (83)
T ss_pred CCCCcEEEEEEEC---ccCCC-----------cCCCEEEEEECCCCCCCCEEEEeCChHH
Confidence 3567899999996 33333 5668999999999999999998877653
No 42
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=23.95 E-value=3.3e+02 Score=22.15 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=41.7
Q ss_pred CCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029850 98 HGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVL 165 (186)
Q Consensus 98 ~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~~~ 165 (186)
...|..+|...+.+| -++.-++.| . . +.....| .++|+++++.++..++...+....-+.
T Consensus 100 ~~~~~~~~~~l~k~G--v~~~~~~~g--~-~-K~~~~~~--~~~s~~~~e~~~~~l~~~~~~f~~~va 159 (207)
T TIGR00706 100 ILQGANVEKLYEKLG--IEFEVIKSG--E-Y-KDIGSPT--RELTPEERDILQNLVNESYEQFVQVVA 159 (207)
T ss_pred EEecCCHHHHHHhCC--ceEEEEEcC--C-C-cCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999995 456666665 2 2 2233344 789999999999888887665555443
No 43
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=23.80 E-value=62 Score=18.75 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=16.4
Q ss_pred cchhhcccCCCHHHHHHHHHHH
Q 029850 132 DMKAYLLQKFSPIEREQIDAAL 153 (186)
Q Consensus 132 ~v~~yVL~~fs~~E~~~l~~~~ 153 (186)
-+.+|+.+..+++|+..|+.=+
T Consensus 7 ~l~~y~dg~L~~~~~~~~~~HL 28 (36)
T PF13490_consen 7 LLSAYLDGELSPEERARLEAHL 28 (36)
T ss_dssp HHHHHHCT-S-HHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHH
Confidence 4579999999999999987644
No 44
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=23.46 E-value=46 Score=27.79 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=24.1
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeeccC
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEMS 84 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdld 84 (186)
-|.+++.+++.++|++++++++=|..+
T Consensus 189 Kg~al~~l~~~~gi~~~~v~afGD~~N 215 (272)
T PRK15126 189 KGAALAVLSQHLGLSLADCMAFGDAMN 215 (272)
T ss_pred hHHHHHHHHHHhCCCHHHeEEecCCHH
Confidence 588999999999999999999988654
No 45
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=23.06 E-value=88 Score=19.30 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=12.0
Q ss_pred cCCCHHHHHHHHHHHHH
Q 029850 139 QKFSPIEREQIDAALEQ 155 (186)
Q Consensus 139 ~~fs~~E~~~l~~~~~~ 155 (186)
++||++|.+.|.+++..
T Consensus 2 ~~Wt~eE~~~l~~~v~~ 18 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKK 18 (48)
T ss_dssp -SS-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999998776654
No 46
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=22.84 E-value=81 Score=26.09 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=24.4
Q ss_pred cchhhHHHHHHHcCCCCCcEEEEeeccC
Q 029850 57 FSGESVGPLAAHYQVPLRHILVIYDEMS 84 (186)
Q Consensus 57 ~SG~~V~~~~~~~~i~~~~ilVvhDdld 84 (186)
..|.+++.+++.|++++++++++=|...
T Consensus 167 ~K~~al~~l~~~~~i~~~~~i~~GD~~N 194 (249)
T TIGR01485 167 GKGQALQYLLQKLAMEPSQTLVCGDSGN 194 (249)
T ss_pred ChHHHHHHHHHHcCCCccCEEEEECChh
Confidence 4588899999999999999999998754
No 47
>KOG3186 consensus Mitotic spindle checkpoint protein [Cell cycle control, cell division, chromosome partitioning]
Probab=22.77 E-value=1.6e+02 Score=24.58 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=49.4
Q ss_pred HHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhccCC
Q 029850 104 LKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 180 (186)
Q Consensus 104 LkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~~~~~~~~~m~~~n~~~~ 180 (186)
|+|++.-| .+.+...+-+-|=..+ ...+..||. +-+....+..+.+.-.++.+.++...+-+..+..|.-.+
T Consensus 59 l~s~~elL-~~~~v~~v~l~i~~KE-~r~~E~yvf---~~~s~p~~~~~~d~~l~~~eq~mRa~i~kis~~~n~lp~ 130 (202)
T KOG3186|consen 59 LQSCIELL-QTGSVHQVALSIINKE-QREEERYVF---STDSIPIIPDFLDEFLDAYEQYMRASIIKISNITNGLPL 130 (202)
T ss_pred HHHHHHHH-hcCCeeEEEEEEEccc-cChhhheEe---eccCCCcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 78999999 5889999999887654 357788884 445555555555555556666666667777777776433
No 48
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=22.56 E-value=1.6e+02 Score=21.19 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=38.0
Q ss_pred cchhhccc--CCCHHHHHHHH---HHHHHHHHHHHHHHHhCHHHHHHhhhccCCccc
Q 029850 132 DMKAYLLQ--KFSPIEREQID---AALEQGVEAVRTLVLNGFDQNISRFNMGQKYKY 183 (186)
Q Consensus 132 ~v~~yVL~--~fs~~E~~~l~---~~~~~a~~~~~~~~~~~~~~~m~~~n~~~~~~~ 183 (186)
++-||.++ -|+.+|.+.|. .--++|...+..+...|-.++-..+|+-+...|
T Consensus 18 ~ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~ 74 (86)
T cd08323 18 YIMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGY 74 (86)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 45677776 57999999886 346778888888888888888777776543333
No 49
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=22.30 E-value=82 Score=25.27 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=23.2
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
-|.++..+++.+++++++++.+=|..
T Consensus 180 Kg~al~~l~~~lgi~~~~vi~~GD~~ 205 (221)
T TIGR02463 180 KGKAANWLKATYNQPDVKTLGLGDGP 205 (221)
T ss_pred HHHHHHHHHHHhCCCCCcEEEECCCH
Confidence 67889999999999999999998854
No 50
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.03 E-value=3.9e+02 Score=24.37 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCcc---ccchhhHHHHHHHcCCCCCcEEEE
Q 029850 10 QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYM---NFSGESVGPLAAHYQVPLRHILVI 79 (186)
Q Consensus 10 NvGf~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyM---N~SG~~V~~~~~~~~i~~~~ilVv 79 (186)
++|=++.-.|..+- ..|. ....--+++..+.|.+++.+||.-=| -.=|++|.++...|+-.++.|+-|
T Consensus 197 saGPlvA~~L~~~~-~~~e-~~~etV~~e~e~eGRkl~IvKa~GpgstvGr~g~AvE~vv~~~g~~~k~IItI 267 (368)
T COG4046 197 SAGPLVAARLIGNR-DVRE-HEKETVYAEKELEGRKLYIVKAEGPGSTVGRLGEAVEEVVERLGAVPKEIITI 267 (368)
T ss_pred CcchHHHHHHHhcc-cccc-ccccceEEEEeecCcEEEEEecCCCCcccCChHHHHHHHHHHhccCcceEEEe
Confidence 56777777777654 3343 23346677888999999999986544 455788899999997777666654
No 51
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=21.73 E-value=4.5e+02 Score=24.08 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCC---CccccchhhHHHHHHHcCCCCCcEEEE
Q 029850 10 QVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ---AYMNFSGESVGPLAAHYQVPLRHILVI 79 (186)
Q Consensus 10 NvGf~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~---TyMN~SG~~V~~~~~~~~i~~~~ilVv 79 (186)
.+|=+++-.|...... ...-+.-.+++..+.|.+++++|+. .=.=.=|++|..+.+.++-.++.|+-|
T Consensus 184 gaGPLVA~~l~~~~~~--~~~~~dtv~~e~~~egRrv~viKA~GPGstVGrpgeave~i~~~~~~k~~~IITV 254 (355)
T PF07431_consen 184 GAGPLVAGRLMENCSK--WEIAKDTVIAECEFEGRRVYVIKAEGPGSTVGRPGEAVEYIVEKLGGKVDLIITV 254 (355)
T ss_pred CcchHHHHHHHhcCcc--cccccccEEEEEEECCcEEEEEeccCCCccCCChHHHHHHHHHHhcCCccEEEEe
Confidence 4566777777665443 2223456778889999999999964 444556788999999886667666554
No 52
>COG4128 Zot Zonula occludens toxin [General function prediction only]
Probab=21.70 E-value=93 Score=28.33 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=35.5
Q ss_pred cccchhhHHHHHHHcCCCCCcEEEEeeccCCCCceEEEccCC
Q 029850 55 MNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKG 96 (186)
Q Consensus 55 MN~SG~~V~~~~~~~~i~~~~ilVvhDdldl~~G~irlk~~G 96 (186)
-|.-|..+.++.++|.-.+.+++|+-||++-+=+......-|
T Consensus 35 TNVrGl~ler~~~~~pd~~~~i~I~n~D~~~~d~~~~m~~~~ 76 (398)
T COG4128 35 TNVRGLQLERITERYPDATGEIIIVNDDVLKADFFPFMGGEG 76 (398)
T ss_pred EecccccHHHHHHhccCCCCceEEEeccccCcccchhhccee
Confidence 388899999999999999999999999999888766655444
No 53
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=21.46 E-value=95 Score=28.36 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=25.3
Q ss_pred EEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 46 ILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 46 v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
.++++|..+.| .++..++.+|++ .++++||||=
T Consensus 116 ~~~lrp~~~~~---~Ai~dlV~~~~W--~~v~~iYD~d 148 (400)
T cd06392 116 TLAARPPVRLN---DVMLKLVTELRW--QKFIVFYDSE 148 (400)
T ss_pred eEEecCchHHH---HHHHHHHHhCCC--cEEEEEEECc
Confidence 46888864333 399999999986 6899999753
No 54
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=21.20 E-value=1.4e+02 Score=22.48 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=23.7
Q ss_pred cchhhcccCCCHHHHHHHHHHHHHHHHHHHHH
Q 029850 132 DMKAYLLQKFSPIEREQIDAALEQGVEAVRTL 163 (186)
Q Consensus 132 ~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~ 163 (186)
...+-++..|+++|.+.+.+++.+..+-+..+
T Consensus 109 ~~~~~~~~~l~~ee~~~l~~~l~~l~~~l~~~ 140 (144)
T PRK03573 109 KTRAEILHGISAEEIEQLITLIAKLEKNIIEL 140 (144)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34566789999999999988887766655443
No 55
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=21.19 E-value=4.1e+02 Score=20.76 Aligned_cols=81 Identities=21% Similarity=0.324 Sum_probs=45.2
Q ss_pred cEEEEeec--cCCCCceEEEccC-------CCCCCCCcHHHHHHhhcCCCCcceEEE-eecCCCCCCcchhhcccCCCHH
Q 029850 75 HILVIYDE--MSLMNGVLRLQPK-------GGHGHHNGLKSVMNHLDGCREFPRLCI-GIGNPPGKMDMKAYLLQKFSPI 144 (186)
Q Consensus 75 ~ilVvhDd--ldl~~G~irlk~~-------Gs~~GHNGLkSI~~~lg~t~~f~RlrI-GIGrP~~~~~v~~yVL~~fs~~ 144 (186)
+.+||.|= .+.++|.++.-.. ..+...-||..++..+.+ ..+++.+ ||= |. ++ +| =..+|++
T Consensus 56 d~vIiVDA~~~g~~PG~v~~~~~~~~~~~~~~s~H~~~l~~~l~~l~~--~~p~v~iigI~-~~---~~-~~-g~~LS~~ 127 (156)
T PRK11544 56 ERLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKE--DVPEVIFLGIQ-PD---IV-GF-YYPMTQP 127 (156)
T ss_pred CEEEEEECCccCcCCCEEEEEchhhcccccCCCCCcCCHHHHHHHHhc--CCCcEEEEEEE-ee---ec-cC-CCCCCHH
Confidence 55666674 5679999987321 123344489999888842 3455544 552 32 22 22 2355665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 029850 145 EREQIDAALEQGVEAVRTLVLNG 167 (186)
Q Consensus 145 E~~~l~~~~~~a~~~~~~~~~~~ 167 (186)
=++. ++++.+.++.|...+
T Consensus 128 v~~a----v~~~~~~l~~~~~~~ 146 (156)
T PRK11544 128 VKDA----VETVYQRLEGWEGNG 146 (156)
T ss_pred HHHH----HHHHHHHHHHhhccC
Confidence 4444 455666677666433
No 56
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=20.86 E-value=1e+02 Score=22.68 Aligned_cols=19 Identities=21% Similarity=0.453 Sum_probs=16.3
Q ss_pred HHHcCCCCCcEEEEeeccC
Q 029850 66 AAHYQVPLRHILVIYDEMS 84 (186)
Q Consensus 66 ~~~~~i~~~~ilVvhDdld 84 (186)
.+.++++++++.|+..|++
T Consensus 86 ~~~lgi~~~rv~I~f~~~~ 104 (116)
T PTZ00397 86 ASHLKVKSERVYIEFKDCS 104 (116)
T ss_pred HHHhCcCcccEEEEEEECC
Confidence 3568999999999999886
No 57
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=20.86 E-value=4e+02 Score=21.99 Aligned_cols=86 Identities=13% Similarity=0.296 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeeccCCCCceEE
Q 029850 12 GFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLMNGVLR 91 (186)
Q Consensus 12 Gf~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdldl~~G~ir 91 (186)
....+..+.+..|+...+....-.+.....++-++.-.-|+ .+.+-+.|+.+++.|+|....+ .+.+|+.
T Consensus 93 ~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~--~~~~~~~v~~~l~~~~i~~~~v-~~~~~~~------- 162 (233)
T cd01896 93 HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPL--TKLDEKTIKAILREYKIHNADV-LIREDIT------- 162 (233)
T ss_pred HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCC--CCCCHHHHHHHHHHhCeeeEEE-EEccCCC-------
Confidence 34445556667787554333322333333344333333333 4457789999999999866555 5555554
Q ss_pred EccCCCCCCCCcHHHHHHhhcCCCCcce
Q 029850 92 LQPKGGHGHHNGLKSVMNHLDGCREFPR 119 (186)
Q Consensus 92 lk~~Gs~~GHNGLkSI~~~lg~t~~f~R 119 (186)
+.++++.+.++..|..
T Consensus 163 ------------~~~~~~~~~~~~~y~p 178 (233)
T cd01896 163 ------------VDDLIDVIEGNRVYIP 178 (233)
T ss_pred ------------HHHHHHHHhCCceEee
Confidence 6778888854434433
No 58
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=20.84 E-value=3.9e+02 Score=20.44 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=41.8
Q ss_pred cEEEEeecc--CCCCceEEEccC-----CC-CCCCCcHHHHHHhhcCCCCcceEEE-eecCCCCCCcchhhcccCCCHHH
Q 029850 75 HILVIYDEM--SLMNGVLRLQPK-----GG-HGHHNGLKSVMNHLDGCREFPRLCI-GIGNPPGKMDMKAYLLQKFSPIE 145 (186)
Q Consensus 75 ~ilVvhDdl--dl~~G~irlk~~-----Gs-~~GHNGLkSI~~~lg~t~~f~RlrI-GIGrP~~~~~v~~yVL~~fs~~E 145 (186)
+.++|.|-. +.++|.++.-.. .+ +-...|+..+++.+.+ .--.++.| ||- |. ++ +|- ..+|++=
T Consensus 55 d~viivDA~~~g~~PG~v~~~~~~~~~~~~~s~H~~~l~~ll~~~~~-~~~~~~~ligi~-~~---~~-~~g-~~LS~~v 127 (146)
T TIGR00142 55 THILIVDATDMGLNPGEVRIIDDDIIEMYSMSTHNMPLSYLVDYLKE-DINGEIIFLGIQ-PD---IV-GFY-YPMSQPV 127 (146)
T ss_pred CEEEEEECcccCCCCCeEEEEChhhccccccCcCcCCHHHHHHHHHh-cCCCeEEEEEEe-ee---ee-ecC-CCCCHHH
Confidence 566666764 569999887331 12 3334499999887732 21245555 553 32 22 333 4677765
Q ss_pred HHHHHHHHHHH
Q 029850 146 REQIDAALEQG 156 (186)
Q Consensus 146 ~~~l~~~~~~a 156 (186)
++.++++++.+
T Consensus 128 ~~a~~~~~~~i 138 (146)
T TIGR00142 128 KDAVETLYQRL 138 (146)
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 59
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=20.83 E-value=67 Score=24.14 Aligned_cols=78 Identities=10% Similarity=0.077 Sum_probs=49.5
Q ss_pred eCCCccccchhhHHHHHHHcCCCCCcEEEEeeccC-----C----CCceEEEccCCCCCC-CCcHHHHHHhhcC-CCCcc
Q 029850 50 KPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMS-----L----MNGVLRLQPKGGHGH-HNGLKSVMNHLDG-CREFP 118 (186)
Q Consensus 50 KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdld-----l----~~G~irlk~~Gs~~G-HNGLkSI~~~lg~-t~~f~ 118 (186)
.+.+.=|.+|..+.++++.++.......++-||.+ + .--.+-+-.||..-| ..=.+.+++.+++ .-.|.
T Consensus 11 ~~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g~~D~t~~~l~~~~~~~~~~~ 90 (135)
T smart00852 11 SGGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPGPDDVTPEAVAEALGKELPGF 90 (135)
T ss_pred cCCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCCCCcCcHHHHHHHhCCcCCCh
Confidence 35455599999999999999998888888889855 1 223455666774434 4445666666632 12344
Q ss_pred eEEEeecCC
Q 029850 119 RLCIGIGNP 127 (186)
Q Consensus 119 RlrIGIGrP 127 (186)
++.+=-|+|
T Consensus 91 ~~~~~Pg~~ 99 (135)
T smart00852 91 GEAMRPGGA 99 (135)
T ss_pred hhhhcccCC
Confidence 444433443
No 60
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=20.57 E-value=1.6e+02 Score=27.20 Aligned_cols=77 Identities=10% Similarity=0.112 Sum_probs=56.5
Q ss_pred CCCccccchhhHHHHHHHcCCCCCcEEEEeeccC---------CCCceEEEccCCCCC-CCCcHHHHHHhhcCCCCcceE
Q 029850 51 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMS---------LMNGVLRLQPKGGHG-HHNGLKSVMNHLDGCREFPRL 120 (186)
Q Consensus 51 P~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdld---------l~~G~irlk~~Gs~~-GHNGLkSI~~~lg~t~~f~Rl 120 (186)
+..--|.++..+..+++.++.......++-||.+ +.-..+=|-.||.+- ...=++.+++.+| ...|+++
T Consensus 214 ~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S~G~~D~v~~~l~~~G-~~~~~~v 292 (419)
T PRK14690 214 VGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGASAGDEDHVSALLREAG-AMQSWRI 292 (419)
T ss_pred CCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCccCCCcchHHHHHHhcC-CEEEcce
Confidence 4445588999999999999998888889999887 222456667777544 4555788889995 5678877
Q ss_pred EEeecCCC
Q 029850 121 CIGIGNPP 128 (186)
Q Consensus 121 rIGIGrP~ 128 (186)
.|==|+|.
T Consensus 293 ~mkPGkp~ 300 (419)
T PRK14690 293 ALKPGRPL 300 (419)
T ss_pred eecCCCce
Confidence 76666663
No 61
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=20.56 E-value=49 Score=25.85 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=15.8
Q ss_pred ccCCCCceEEEccCCCCCCCCcHHHHHHhhcCC--CCcceEEEee
Q 029850 82 EMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGC--REFPRLCIGI 124 (186)
Q Consensus 82 dldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t--~~f~RlrIGI 124 (186)
-+++|+|+|.+|.+-..---.+...+++.|... .+|.|++--|
T Consensus 71 s~~l~~G~v~~R~~~~~~~~~~~~~vl~~Lk~~gl~~~Ir~keev 115 (149)
T PF07352_consen 71 SLKLPFGTVGFRKSTPKVKVRDEEKVLEWLKENGLKEFIRTKEEV 115 (149)
T ss_dssp -EE-SS-EE-----------T-HHHHHHHHHHCT-GCC-------
T ss_pred EEEcCCeeEEEEecCCcccCCCHHHHHHHHHHcCchhhEEeeeec
Confidence 468999999998876544334899999988421 3666655433
No 62
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=20.33 E-value=2.6e+02 Score=22.00 Aligned_cols=85 Identities=11% Similarity=0.187 Sum_probs=52.1
Q ss_pred EEeCCCccccchhhHHHHHHHcC---CCCCcEEEEeeccCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEe-
Q 029850 48 LAKPQAYMNFSGESVGPLAAHYQ---VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIG- 123 (186)
Q Consensus 48 L~KP~TyMN~SG~~V~~~~~~~~---i~~~~ilVvhDdldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIG- 123 (186)
++.|.. +-++=.++.++.+.++ .+.++++||..+.. +..+.+.+.-.+.+|-||
T Consensus 48 ma~P~g-vk~~i~sve~a~~~l~~~~~~~~~v~vl~k~~~---------------------da~~l~~~g~~i~~iniG~ 105 (151)
T TIGR00854 48 IVAPTG-FKVRFVSLEKTINVIHKPAYHDQTIFLLFRNPQ---------------------DVLTLVEGGVPIKTVNVGG 105 (151)
T ss_pred hhCCCC-CEEEEEEHHHHHHHHhCcCCCCceEEEEECCHH---------------------HHHHHHHcCCCCCEEEECC
Confidence 445532 4444556666666553 44568999887665 222333212358888888
Q ss_pred ecCCCCCCcchhhcccCCCHHHHHHHHHHHHHH
Q 029850 124 IGNPPGKMDMKAYLLQKFSPIEREQIDAALEQG 156 (186)
Q Consensus 124 IGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a 156 (186)
++..+++..+...| -.+++|.+.|.++.+..
T Consensus 106 ~~~~~g~~~v~~~v--~l~~~e~~~l~~l~~~G 136 (151)
T TIGR00854 106 MHFSNGKKQITKKV--SVDDQDITAFRFLKQRG 136 (151)
T ss_pred cccCCCCEEEecce--eeCHHHHHHHHHHHHcC
Confidence 44444455666666 67999999998876653
No 63
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=20.30 E-value=87 Score=29.78 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=16.8
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeeccC
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEMS 84 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdld 84 (186)
+|-++++.+.+ .-++.|||+|||.
T Consensus 241 ~g~a~aE~f~~---~G~dvLIVyDDLs 264 (504)
T COG0056 241 AGCAMAEYFRD---NGKDVLIVYDDLS 264 (504)
T ss_pred hhhHHHHHHHh---cCCeEEEEecCch
Confidence 56666554444 3479999999985
No 64
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=20.28 E-value=65 Score=25.89 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=23.4
Q ss_pred hhhHHHHHHHcCCCCCcEEEEeeccC
Q 029850 59 GESVGPLAAHYQVPLRHILVIYDEMS 84 (186)
Q Consensus 59 G~~V~~~~~~~~i~~~~ilVvhDdld 84 (186)
|.++..+++.+++++++++++=|...
T Consensus 159 g~al~~l~~~~~i~~~~~i~~GD~~N 184 (230)
T PRK01158 159 GTGLKKLAELMGIDPEEVAAIGDSEN 184 (230)
T ss_pred HHHHHHHHHHhCCCHHHEEEECCchh
Confidence 89999999999999999999988643
No 65
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=20.08 E-value=1.4e+02 Score=19.70 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=23.3
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeeccCCCC
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEMSLMN 87 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdldl~~ 87 (186)
++.+|..+++.++++++.+.|..+.--+|.
T Consensus 13 ~~~tv~~ll~~l~~~~~~i~V~vNg~~v~~ 42 (65)
T cd00565 13 EGATLAELLEELGLDPRGVAVALNGEIVPR 42 (65)
T ss_pred CCCCHHHHHHHcCCCCCcEEEEECCEEcCH
Confidence 356799999999999998888877654443
Done!