Query 029850
Match_columns 186
No_of_seqs 140 out of 1037
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fyj_A PTH, peptidyl-tRNA hydr 100.0 1.4E-70 4.9E-75 452.9 20.5 174 4-178 23-198 (199)
2 2pth_A Peptidyl-tRNA hydrolase 100.0 1.5E-70 5.2E-75 451.3 20.2 176 4-179 15-191 (193)
3 2z2i_A PTH, peptidyl-tRNA hydr 100.0 2.8E-70 9.7E-75 448.9 17.7 172 5-177 18-190 (191)
4 4hoy_A PTH, peptidyl-tRNA hydr 100.0 6.4E-70 2.2E-74 447.5 19.3 175 4-180 17-192 (193)
5 1ryb_A CRS2; alpha-beta, hydro 100.0 6.3E-70 2.2E-74 450.7 18.9 174 4-178 30-204 (205)
6 3v2i_A PTH, peptidyl-tRNA hydr 100.0 6.2E-69 2.1E-73 449.2 19.8 174 4-178 36-220 (222)
7 3nea_A PTH, peptidyl-tRNA hydr 100.0 3.8E-69 1.3E-73 446.4 15.5 171 4-175 36-207 (207)
8 4fno_A PTH, peptidyl-tRNA hydr 100.0 1.5E-70 5.2E-75 451.4 0.0 175 4-179 17-193 (194)
9 2ba3_A NIKA; dimer, bacterial 51.7 6.6 0.00023 24.0 1.6 41 124-164 4-45 (51)
10 2jva_A Peptidyl-tRNA hydrolase 51.1 6 0.00021 28.9 1.5 41 77-125 2-44 (108)
11 2zet_C Melanophilin; complex, 50.3 25 0.00087 26.9 5.1 21 138-158 14-34 (153)
12 2ea9_A JW2626, hypothetical pr 50.2 19 0.00065 26.1 4.0 30 138-167 37-66 (105)
13 2inw_A Putative structural pro 49.6 24 0.00083 26.5 4.6 30 138-167 51-80 (133)
14 3utn_X Thiosulfate sulfurtrans 48.4 17 0.00059 30.9 4.2 36 51-86 90-125 (327)
15 2k9i_A Plasmid PRN1, complete 43.1 20 0.00069 21.6 2.9 49 125-174 1-49 (55)
16 4dh9_Y YAEJ; ribosome, YAEJ, r 42.7 4.8 0.00016 30.7 -0.2 41 77-125 2-44 (140)
17 4hbl_A Transcriptional regulat 41.2 30 0.001 24.8 4.0 31 134-164 117-147 (149)
18 4gib_A Beta-phosphoglucomutase 40.5 57 0.002 25.2 5.9 69 60-154 174-242 (250)
19 1zbd_B Rabphilin-3A; G protein 38.6 36 0.0012 25.5 4.2 36 138-174 7-42 (134)
20 2l32_A Small archaeal modifier 35.9 23 0.00078 23.6 2.4 32 58-89 19-50 (74)
21 1lj9_A Transcriptional regulat 35.7 50 0.0017 23.0 4.5 33 133-165 107-139 (144)
22 2cqq_A RSGI RUH-037, DNAJ homo 34.5 71 0.0024 21.2 4.8 39 139-177 9-54 (72)
23 1am7_A Lysozyme; glycosidase, 33.9 47 0.0016 25.7 4.2 41 136-177 81-122 (158)
24 2llk_A Cyclin-D-binding MYB-li 33.5 91 0.0031 20.7 5.2 41 138-178 23-66 (73)
25 3kp7_A Transcriptional regulat 33.2 57 0.002 23.1 4.5 31 134-164 118-148 (151)
26 3r4c_A Hydrolase, haloacid deh 32.5 29 0.00099 27.0 2.9 25 59-83 196-220 (268)
27 3fzq_A Putative hydrolase; YP_ 32.5 29 0.00099 26.9 2.9 26 58-83 201-226 (274)
28 3ddh_A Putative haloacid dehal 32.2 33 0.0011 25.1 3.1 26 58-83 159-184 (234)
29 3b64_A Macrophage migration in 30.8 38 0.0013 23.5 3.1 21 67-88 86-106 (112)
30 3dnp_A Stress response protein 30.5 32 0.0011 27.0 2.9 26 58-83 203-228 (290)
31 2pq0_A Hypothetical conserved 30.3 29 0.00098 27.0 2.6 24 59-82 185-208 (258)
32 4dw8_A Haloacid dehalogenase-l 30.3 31 0.0011 27.0 2.8 25 59-83 199-223 (279)
33 3deu_A Transcriptional regulat 30.3 37 0.0013 25.0 3.1 33 133-165 132-164 (166)
34 3dao_A Putative phosphatse; st 29.6 34 0.0012 27.2 2.9 26 58-83 212-237 (283)
35 3pgv_A Haloacid dehalogenase-l 29.4 34 0.0012 27.1 2.9 26 58-83 210-235 (285)
36 1x93_A Hypothetical protein HP 29.2 15 0.00053 23.3 0.6 33 141-173 8-40 (55)
37 1w94_A MIL, probable BRIX-doma 29.1 43 0.0015 25.5 3.3 32 52-86 27-58 (156)
38 3mpo_A Predicted hydrolase of 28.8 31 0.001 27.0 2.5 25 58-82 198-222 (279)
39 3l7y_A Putative uncharacterize 28.3 36 0.0012 27.3 2.9 25 59-83 230-254 (304)
40 3mtn_B UBA80, ubcep1, ubiquiti 27.6 60 0.002 20.8 3.4 47 57-103 24-85 (85)
41 3vay_A HAD-superfamily hydrola 24.7 25 0.00085 26.1 1.2 26 58-83 157-182 (230)
42 3bj6_A Transcriptional regulat 24.6 93 0.0032 21.8 4.3 32 133-164 118-149 (152)
43 3nrv_A Putative transcriptiona 24.6 62 0.0021 22.7 3.3 30 133-162 118-147 (148)
44 3fwt_A Macrophage migration in 23.8 49 0.0017 24.2 2.6 21 67-88 107-127 (133)
45 2k1o_A Putative; repressor, tr 23.0 21 0.00071 23.5 0.3 32 141-172 22-53 (66)
46 2gxg_A 146AA long hypothetical 23.0 92 0.0031 21.6 4.0 29 134-162 115-143 (146)
47 3bpv_A Transcriptional regulat 22.9 70 0.0024 22.0 3.3 29 134-162 108-136 (138)
48 2c4n_A Protein NAGD; nucleotid 22.8 52 0.0018 24.3 2.7 26 58-83 178-203 (250)
49 4aik_A Transcriptional regulat 22.7 66 0.0023 23.4 3.2 30 133-162 110-139 (151)
50 2x4d_A HLHPP, phospholysine ph 22.4 56 0.0019 24.7 2.9 26 58-83 192-217 (271)
51 3s2w_A Transcriptional regulat 22.4 72 0.0025 22.8 3.3 29 134-162 129-157 (159)
52 1l7m_A Phosphoserine phosphata 20.9 63 0.0022 23.3 2.8 25 59-83 145-169 (211)
53 3qnm_A Haloacid dehalogenase-l 20.8 69 0.0024 23.5 3.0 26 58-83 164-189 (240)
54 2fbh_A Transcriptional regulat 20.8 96 0.0033 21.4 3.7 28 134-161 117-144 (146)
55 2rbk_A Putative uncharacterize 20.1 63 0.0022 25.1 2.8 26 58-83 188-213 (261)
No 1
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=1.4e-70 Score=452.92 Aligned_cols=174 Identities=28% Similarity=0.481 Sum_probs=166.9
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
|.+|||||||+++|+||++++.+|.+ +++.++++++.+++++++|+||+||||+||++|+++++||+|++++|||||||
T Consensus 23 Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~~~ilVihDd 102 (199)
T 4fyj_A 23 YDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDE 102 (199)
T ss_dssp GTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred hCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHhCCCHHHEEEEEec
Confidence 34999999999999999999999865 47889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCC-CcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHH
Q 029850 83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCR-EFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVR 161 (186)
Q Consensus 83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~-~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~ 161 (186)
||||+|++|+|.+||+|||||||||+++| +|+ +|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++
T Consensus 103 ldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~ 181 (199)
T 4fyj_A 103 LDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLP 181 (199)
T ss_dssp TTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 577 9999999999998888999999999999999999999999999999
Q ss_pred HHHHhCHHHHHHhhhcc
Q 029850 162 TLVLNGFDQNISRFNMG 178 (186)
Q Consensus 162 ~~~~~~~~~~m~~~n~~ 178 (186)
.|++.+++++||+||+.
T Consensus 182 ~~~~~~~~~amn~~n~~ 198 (199)
T 4fyj_A 182 EMLAGDWTRAMQKLHSQ 198 (199)
T ss_dssp HHHHTCHHHHHHHHTTC
T ss_pred HHHHCCHHHHHHHHhCC
Confidence 99999999999999985
No 2
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=100.00 E-value=1.5e-70 Score=451.26 Aligned_cols=176 Identities=27% Similarity=0.459 Sum_probs=167.0
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
|.+|||||||+++|+||++++++|. ++++++.++++.+.+++++|+||+||||+||++|+++++||+|++++|||||||
T Consensus 15 Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~yki~~~~ilVihDd 94 (193)
T 2pth_A 15 YAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDE 94 (193)
T ss_dssp TTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred cccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHhCCCHHHEEEEecc
Confidence 5699999999999999999999987 457889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850 83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT 162 (186)
Q Consensus 83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~ 162 (186)
||||+|++|+|.+||+|||||||||+++||+|++|+|||||||||..+.++++|||++|+++|++.|+++++.|++|++.
T Consensus 95 ldlp~G~irlk~gGs~gGHNGlkSI~~~Lg~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~ 174 (193)
T 2pth_A 95 LDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEM 174 (193)
T ss_dssp TTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999427899999999999965557999999999999999999999999999999
Q ss_pred HHHhCHHHHHHhhhccC
Q 029850 163 LVLNGFDQNISRFNMGQ 179 (186)
Q Consensus 163 ~~~~~~~~~m~~~n~~~ 179 (186)
|++.+++++||+||+++
T Consensus 175 ~~~~~~~~amn~~n~~~ 191 (193)
T 2pth_A 175 WFTDGLTKATNRLHAFK 191 (193)
T ss_dssp HHHHCHHHHHHHHHHTT
T ss_pred HHHCCHHHHHHHHhCcc
Confidence 99999999999999864
No 3
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=100.00 E-value=2.8e-70 Score=448.93 Aligned_cols=172 Identities=37% Similarity=0.642 Sum_probs=154.4
Q ss_pred CCCchhHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 5 TIISCQVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 5 ~~TRHNvGf~~ld~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
.+|||||||+++|+||+++++++.+ +++++.++++.+.+++++|+||+||||+||++|+++++||+|++++||||||||
T Consensus 18 ~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~yki~~~~ilVihDdl 97 (191)
T 2z2i_A 18 ARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDL 97 (191)
T ss_dssp HTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHTTCCGGGEEEEEEET
T ss_pred ccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHHhCCCHHHEEEEeccc
Confidence 4899999999999999999999865 468899999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHH
Q 029850 84 SLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTL 163 (186)
Q Consensus 84 dl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~ 163 (186)
|||+|++|+|.+||+|||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.|
T Consensus 98 dlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~~ 176 (191)
T 2z2i_A 98 DLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELL 176 (191)
T ss_dssp TSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 589999999999999756679999999999999999999999999999999
Q ss_pred HHhCHHHHHHhhhc
Q 029850 164 VLNGFDQNISRFNM 177 (186)
Q Consensus 164 ~~~~~~~~m~~~n~ 177 (186)
++.+++++||+||+
T Consensus 177 ~~~~~~~amn~~n~ 190 (191)
T 2z2i_A 177 IEQGMEPAQNRVHA 190 (191)
T ss_dssp HHC-----------
T ss_pred HHCCHHHHHHHHhC
Confidence 99999999999995
No 4
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=100.00 E-value=6.4e-70 Score=447.54 Aligned_cols=175 Identities=32% Similarity=0.536 Sum_probs=167.8
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
|.+|||||||+++|.||+++++++.. +++.+.++++.+.+++++|+||+||||+||++|++++++|++++++|||||||
T Consensus 17 Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~~ki~~~~ilVihDd 96 (193)
T 4hoy_A 17 YAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDE 96 (193)
T ss_dssp TTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred hCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHHcCCCchheEEeeec
Confidence 56899999999999999999999865 47889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850 83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT 162 (186)
Q Consensus 83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~ 162 (186)
||||+|++|+|++||+|||||||||+++| +| ||+|||||||||+++.++++|||++|+++|++.|+++++.|+++++.
T Consensus 97 ldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~i~~ 174 (193)
T 4hoy_A 97 LDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKL 174 (193)
T ss_dssp TTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHHHHHHHHHHHHTHHH
T ss_pred cccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 45 79999999999998889999999999999999999999999999999
Q ss_pred HHHhCHHHHHHhhhccCC
Q 029850 163 LVLNGFDQNISRFNMGQK 180 (186)
Q Consensus 163 ~~~~~~~~~m~~~n~~~~ 180 (186)
|+++++++|||+||++++
T Consensus 175 ~~~~~~~~amn~~n~~kp 192 (193)
T 4hoy_A 175 LVQGQVPQAMNQINAYKP 192 (193)
T ss_dssp HHTTCHHHHHHHHHTCCC
T ss_pred HHHCCHHHHHHHHhCCCC
Confidence 999999999999999754
No 5
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=100.00 E-value=6.3e-70 Score=450.71 Aligned_cols=174 Identities=69% Similarity=1.087 Sum_probs=162.4
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
|.+|||||||+++|+||+++++++.+.++++.++++.+.+++++|+||+||||+||++|+++++||+|++++||||||||
T Consensus 30 Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~~~yki~~~~ilVihDdL 109 (205)
T 1ryb_A 30 YYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDT 109 (205)
T ss_dssp GTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTCCGGGEEEEEEET
T ss_pred hccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHHHHhCCCHHHEEEEeecc
Confidence 56899999999999999999999887788999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEccCCCCCCCCcHHHHHHhh-cCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850 84 SLMNGVLRLQPKGGHGHHNGLKSVMNHL-DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT 162 (186)
Q Consensus 84 dl~~G~irlk~~Gs~~GHNGLkSI~~~l-g~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~ 162 (186)
|||+|++|+|.+||+|||||||||+++| | |++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.
T Consensus 110 dLp~G~iRlk~gGs~gGHNGLkSI~~~L~g-t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~ 188 (205)
T 1ryb_A 110 SLPNGVLRLQKKGGHGRHNGLQNVIEHLDG-RREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRT 188 (205)
T ss_dssp TSCTTCEEEESSCCCTTCHHHHHHHHHTTT-CCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEeeCCCCCCCCCHHHHHHHhcC-CCCeEEEEEecCCCCCCCchhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 6 7999999999999976668999999999999999999999999999999
Q ss_pred HHHhCHHHHHHhhhcc
Q 029850 163 LVLNGFDQNISRFNMG 178 (186)
Q Consensus 163 ~~~~~~~~~m~~~n~~ 178 (186)
|++.+++++||+||++
T Consensus 189 ~~~~~~~~amn~~n~~ 204 (205)
T 1ryb_A 189 LVLKGFSGSTERFNLV 204 (205)
T ss_dssp HHHHC-----CCCCCC
T ss_pred HHHCCHHHHHHHHhcC
Confidence 9999999999999974
No 6
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=100.00 E-value=6.2e-69 Score=449.23 Aligned_cols=174 Identities=30% Similarity=0.480 Sum_probs=161.6
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
|.+|||||||+++|+||++++++|.+. ++.+.++++.+.+++++|+||+||||+||++|+++++||+|++++|||||||
T Consensus 36 Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~e~ilVihDd 115 (222)
T 3v2i_A 36 YTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAHFFKILPNEILVAHDE 115 (222)
T ss_dssp GTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred hCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHHHhCCCHHHEEEEEec
Confidence 359999999999999999999998764 6889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCC----------CCCCcchhhcccCCCHHHHHHHHHH
Q 029850 83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNP----------PGKMDMKAYLLQKFSPIEREQIDAA 152 (186)
Q Consensus 83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP----------~~~~~v~~yVL~~fs~~E~~~l~~~ 152 (186)
||||+|++|+|.+||++||||||||+++| +|++|+||||||||| +.+.++++|||++|+++|++.|+++
T Consensus 116 LDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yVL~~fs~~E~~~l~~~ 194 (222)
T 3v2i_A 116 LDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAA 194 (222)
T ss_dssp TTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHTTSCCCHHHHHHHHHH
T ss_pred CCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHhccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999 589999999999999 5567899999999999999999999
Q ss_pred HHHHHHHHHHHHHhCHHHHHHhhhcc
Q 029850 153 LEQGVEAVRTLVLNGFDQNISRFNMG 178 (186)
Q Consensus 153 ~~~a~~~~~~~~~~~~~~~m~~~n~~ 178 (186)
++.|+++++.|++.+++++||+||+.
T Consensus 195 i~~a~~av~~~~~~~~~~amn~~n~~ 220 (222)
T 3v2i_A 195 IERALAVMPAVVKGETERAMMQLHRN 220 (222)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHC---
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence 99999999999999999999999975
No 7
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=100.00 E-value=3.8e-69 Score=446.42 Aligned_cols=171 Identities=31% Similarity=0.501 Sum_probs=164.7
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
|.+|||||||+++|+||++++++|.+. +++++++++.+++++++|+||+||||+||++|+++++||+|++++|||||||
T Consensus 36 Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~e~ilVihDd 115 (207)
T 3nea_A 36 YQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDE 115 (207)
T ss_dssp TTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred hCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHHhCCCHHHEEEEEEc
Confidence 459999999999999999999998765 7889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850 83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRT 162 (186)
Q Consensus 83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~ 162 (186)
||||+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.
T Consensus 116 LDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~i~~a~~a~~~ 194 (207)
T 3nea_A 116 LDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDD 194 (207)
T ss_dssp TTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 58999999999999988889999999999999999999999999999999
Q ss_pred HHHhCHHHHHHhh
Q 029850 163 LVLNGFDQNISRF 175 (186)
Q Consensus 163 ~~~~~~~~~m~~~ 175 (186)
|++.++++|||++
T Consensus 195 ~~~~~~~~amn~~ 207 (207)
T 3nea_A 195 IINYKLEPVMQKL 207 (207)
T ss_dssp HHTTCCCSCSTTC
T ss_pred HHHCCHHHHHhcC
Confidence 9999999999974
No 8
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=1.5e-70 Score=451.38 Aligned_cols=175 Identities=27% Similarity=0.477 Sum_probs=165.6
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCCccccchhhHHHHHHHcCCCCCcEEEEeec
Q 029850 4 GTIISCQVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 4 ~~~TRHNvGf~~ld~la~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
|.+|||||||+++|+||+++++++. ++++++.++++.+.+++++|+||+||||+||++|+++++||+|++++|||||||
T Consensus 17 Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~fyki~~~~ilVihDd 96 (194)
T 4fno_A 17 YDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDE 96 (194)
Confidence 5699999999999999999999876 357889999988999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEccCCCCCCCCcHHHHHHhhcCC-CCcceEEEeecCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHH
Q 029850 83 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGC-REFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVR 161 (186)
Q Consensus 83 ldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t-~~f~RlrIGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~ 161 (186)
||||+|++|+|.+||+|||||||||+++| +| ++|+|||||||||..+.++++|||++|+++|++.|+++++.|++|++
T Consensus 97 ldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~ 175 (194)
T 4fno_A 97 LDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLP 175 (194)
Confidence 99999999999999999999999999999 58 79999999999996556799999999999999999999999999999
Q ss_pred HHHHhCHHHHHHhhhccC
Q 029850 162 TLVLNGFDQNISRFNMGQ 179 (186)
Q Consensus 162 ~~~~~~~~~~m~~~n~~~ 179 (186)
.|++.+++++||+||+.+
T Consensus 176 ~~~~~~~~~amn~~n~~k 193 (194)
T 4fno_A 176 EMLAGDWTRAMQKLHSQK 193 (194)
Confidence 999999999999999743
No 9
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=51.67 E-value=6.6 Score=24.05 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=25.2
Q ss_pred ecCCCCCCcc-hhhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 029850 124 IGNPPGKMDM-KAYLLQKFSPIEREQIDAALEQGVEAVRTLV 164 (186)
Q Consensus 124 IGrP~~~~~v-~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~~ 164 (186)
.|||.+.... ...+-=+++++|.+.|++....+.--+..|+
T Consensus 4 ~~R~k~~~r~r~~~i~vRlt~eE~~~l~~~A~~~g~s~Seyi 45 (51)
T 2ba3_A 4 AVRKKSEVRQKTVVRTLRFSPVEDETIRKKAEDSGLTVSAYI 45 (51)
T ss_dssp TTBCTTCCCCCSEEEEEEECHHHHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCCCCCCcCceeEEEEECHHHHHHHHHHHHHhCCCHHHHH
Confidence 5788654223 2344458999999999877665533333333
No 10
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=51.11 E-value=6 Score=28.88 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=30.3
Q ss_pred EEEeeccCCCCceEEEc--cCCCCCCCCcHHHHHHhhcCCCCcceEEEeec
Q 029850 77 LVIYDEMSLMNGVLRLQ--PKGGHGHHNGLKSVMNHLDGCREFPRLCIGIG 125 (186)
Q Consensus 77 lVvhDdldl~~G~irlk--~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIG 125 (186)
|.|.+++++|...++++ +++|+||.| +. .++.=.||+.=+.
T Consensus 2 l~i~~~i~I~~~dl~~~~~RssGpGGQn-----VN---Kv~SaV~L~~d~~ 44 (108)
T 2jva_A 2 LVISNNVHLPDAEIELTAIRAQGAGGQN-----VN---KVSSAMHLRFDIN 44 (108)
T ss_dssp EECSSSCEECGGGEEEEECCCTTCSSSS-----SC---CCCCCEEEEEETT
T ss_pred cccccccccChHHEEEEEEECCCCCCCC-----cC---CCcceEEEEEEcc
Confidence 55778899999988886 578999988 22 3445678888764
No 11
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=50.34 E-value=25 Score=26.92 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.6
Q ss_pred ccCCCHHHHHHHHHHHHHHHH
Q 029850 138 LQKFSPIEREQIDAALEQGVE 158 (186)
Q Consensus 138 L~~fs~~E~~~l~~~~~~a~~ 158 (186)
|+.++++|++.|.+++.+..+
T Consensus 14 Ls~LteeEr~~Il~VL~Rd~~ 34 (153)
T 2zet_C 14 LSTLTDEEAEHVWAVVQRDFD 34 (153)
T ss_dssp CTTSCHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhHHH
Confidence 799999999999999988654
No 12
>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A
Probab=50.24 E-value=19 Score=26.13 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=25.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 029850 138 LQKFSPIEREQIDAALEQGVEAVRTLVLNG 167 (186)
Q Consensus 138 L~~fs~~E~~~l~~~~~~a~~~~~~~~~~~ 167 (186)
-+.||++|...|+++++...+-++.++..|
T Consensus 37 ~G~Fs~~~~~~Ld~aFP~~ikqlE~mL~sG 66 (105)
T 2ea9_A 37 TGKFSDAECPKLDVVFPHFISQIESMLTTG 66 (105)
T ss_dssp ESCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eEecCHHHHHHHHHHhHHHHHHHHHHhccC
Confidence 489999999999999999888888877643
No 13
>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protei structure initiative; 1.50A {Shigella flexneri} SCOP: d.110.8.1 PDB: 2h28_A
Probab=49.60 E-value=24 Score=26.53 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=25.9
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 029850 138 LQKFSPIEREQIDAALEQGVEAVRTLVLNG 167 (186)
Q Consensus 138 L~~fs~~E~~~l~~~~~~a~~~~~~~~~~~ 167 (186)
-+.||++|...|+++++...+-++.++..|
T Consensus 51 ~G~Fs~~~~~~Ld~aFP~~ikQlE~mL~sG 80 (133)
T 2inw_A 51 RGRFSDVDAYHLDQAFPLLMKQLELMLTGG 80 (133)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEecCHHHHHHHHHHhHHHHHHHHHHhccc
Confidence 489999999999999999888888877643
No 14
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=48.38 E-value=17 Score=30.94 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=29.3
Q ss_pred CCCccccchhhHHHHHHHcCCCCCcEEEEeeccCCC
Q 029850 51 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLM 86 (186)
Q Consensus 51 P~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdldl~ 86 (186)
|...|=-|-+...+++..++|..++.||||||-+..
T Consensus 90 ~~ph~LP~~~~f~~~l~~lGI~~d~~VVvYD~~~~~ 125 (327)
T 3utn_X 90 PYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNF 125 (327)
T ss_dssp SSTTCCCCHHHHHHHHHHTTCCTTCEEEEECSSSSS
T ss_pred CCCCCCcCHHHHHHHHHHcCCCCCCEEEEEeCCCCc
Confidence 334566677788899999999999999999997754
No 15
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=43.13 E-value=20 Score=21.59 Aligned_cols=49 Identities=6% Similarity=-0.050 Sum_probs=27.2
Q ss_pred cCCCCCCcchhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHh
Q 029850 125 GNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISR 174 (186)
Q Consensus 125 GrP~~~~~v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~~~~~~~~~m~~ 174 (186)
|||..+ .-..-+-=++++++.+.|+............++...+......
T Consensus 1 GRP~~~-~~~~~i~vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 1 GRPYKL-LNGIKLGVYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp CCCSST-TCCEEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CccceEEEEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 788532 2122334477899999998776654334444444444444433
No 16
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=42.73 E-value=4.8 Score=30.71 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=29.9
Q ss_pred EEEeeccCCCCceEEEc--cCCCCCCCCcHHHHHHhhcCCCCcceEEEeec
Q 029850 77 LVIYDEMSLMNGVLRLQ--PKGGHGHHNGLKSVMNHLDGCREFPRLCIGIG 125 (186)
Q Consensus 77 lVvhDdldl~~G~irlk--~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIG 125 (186)
|.|.+++++|...+++. ..+|+||.| +.. ++.=.+|++=|.
T Consensus 2 ~~i~~~i~I~~~el~~~~~RssGpGGQn-----VNK---v~SaV~L~~~~~ 44 (140)
T 4dh9_Y 2 IVISRHVAIPDGELEITAIRAQGAGGQH-----VNK---TSTAIHLRFDIR 44 (140)
T ss_dssp CCCCSSSCCCTTCSEEEEECCCSSSSHH-----HHT---TCCCEEEEECCS
T ss_pred ccccCCCccChHHeEEEEEECCCCCCCc-----ccc---ccceEEEEEecc
Confidence 55788999999988886 578899977 233 345678887554
No 17
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=41.22 E-value=30 Score=24.75 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=25.8
Q ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 029850 134 KAYLLQKFSPIEREQIDAALEQGVEAVRTLV 164 (186)
Q Consensus 134 ~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~~ 164 (186)
.++++..|+++|++.+..++.+..+.++.+.
T Consensus 117 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 147 (149)
T 4hbl_A 117 SSCLPQEFDTTEYDETKYVFEELEQTLKHLI 147 (149)
T ss_dssp HTTSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3448899999999999999998888777654
No 18
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=40.49 E-value=57 Score=25.16 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=42.7
Q ss_pred hhHHHHHHHcCCCCCcEEEEeeccCCCCceEEEccCCCCCCCCcHHHHHHhhcCCCCcceEEEeecCCCCCCcchhhccc
Q 029850 60 ESVGPLAAHYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQ 139 (186)
Q Consensus 60 ~~V~~~~~~~~i~~~~ilVvhDdldl~~G~irlk~~Gs~~GHNGLkSI~~~lg~t~~f~RlrIGIGrP~~~~~v~~yVL~ 139 (186)
.....+++.++++|+++++|=|... ++..- ... | + --|||+++.. ..-+|||+.
T Consensus 174 ~~~~~a~~~lg~~p~e~l~VGDs~~------------------Di~aA-~~a-G---~--~~i~v~~~~~-~~~ad~vi~ 227 (250)
T 4gib_A 174 EIFLMSAKGLNVNPQNCIGIEDASA------------------GIDAI-NSA-N---M--FSVGVGNYEN-LKKANLVVD 227 (250)
T ss_dssp HHHHHHHHHHTCCGGGEEEEESSHH------------------HHHHH-HHT-T---C--EEEEESCTTT-TTTSSEEES
T ss_pred HHHHHHHHHhCCChHHeEEECCCHH------------------HHHHH-HHc-C---C--EEEEECChhH-hccCCEEEC
Confidence 4556778888999999988876421 22221 222 2 2 1468887653 344799999
Q ss_pred CCCHHHHHHHHHHHH
Q 029850 140 KFSPIEREQIDAALE 154 (186)
Q Consensus 140 ~fs~~E~~~l~~~~~ 154 (186)
.+++-..+.|.+.++
T Consensus 228 ~l~eL~~~~i~~~~n 242 (250)
T 4gib_A 228 STNQLKFEYIQEKYN 242 (250)
T ss_dssp SGGGCCHHHHHHHHH
T ss_pred ChHhCCHHHHHHHHH
Confidence 887655566655544
No 19
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.63 E-value=36 Score=25.46 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=23.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHh
Q 029850 138 LQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISR 174 (186)
Q Consensus 138 L~~fs~~E~~~l~~~~~~a~~~~~~~~~~~~~~~m~~ 174 (186)
||.++++|++.|.+++.+..+ ++..-++.+.+..++
T Consensus 7 ls~LteeE~~~Il~Vl~Rd~~-l~~~E~~ri~kL~~~ 42 (134)
T 1zbd_B 7 QEELTDEEKEIINRVIARAEK-METMEQERIGRLVDR 42 (134)
T ss_dssp -CCCCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhHHH-HHHhHHHHHHHHHHH
Confidence 578899999999999988655 444444434444433
No 20
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=35.89 E-value=23 Score=23.63 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=27.5
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeeccCCCCce
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEMSLMNGV 89 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdldl~~G~ 89 (186)
.|..|+.+++.++++++.++|+.+.--+|...
T Consensus 19 ~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 19 DDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp TTCSHHHHHHTTCCCSSCCCEECCCCCCCTTS
T ss_pred CCCcHHHHHHHcCCCcceEEEEECCEECCHHH
Confidence 36789999999999999999998887777765
No 21
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=35.70 E-value=50 Score=23.04 Aligned_cols=33 Identities=21% Similarity=0.064 Sum_probs=26.6
Q ss_pred chhhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029850 133 MKAYLLQKFSPIEREQIDAALEQGVEAVRTLVL 165 (186)
Q Consensus 133 v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~~~ 165 (186)
..+.+++.++++|.+.+.+++.+..+.++..++
T Consensus 107 ~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~ 139 (144)
T 1lj9_A 107 SNQVALQGLSEVEISQLADYLVRMRKNVSEDWE 139 (144)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHH
Confidence 346688999999999999999988887766554
No 22
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=34.54 E-value=71 Score=21.17 Aligned_cols=39 Identities=5% Similarity=0.043 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHHHHHHH-------HHHHHHHHHhCHHHHHHhhhc
Q 029850 139 QKFSPIEREQIDAALEQG-------VEAVRTLVLNGFDQNISRFNM 177 (186)
Q Consensus 139 ~~fs~~E~~~l~~~~~~a-------~~~~~~~~~~~~~~~m~~~n~ 177 (186)
+.||++|.++|++++... .+.|-..+....+.+.++|+.
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~ 54 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQ 54 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 579999999998887764 444444444567777777763
No 23
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=33.91 E-value=47 Score=25.67 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=30.7
Q ss_pred hcccCCCHHHHHHHH-HHHHHHHHHHHHHHHhCHHHHHHhhhc
Q 029850 136 YLLQKFSPIEREQID-AALEQGVEAVRTLVLNGFDQNISRFNM 177 (186)
Q Consensus 136 yVL~~fs~~E~~~l~-~~~~~a~~~~~~~~~~~~~~~m~~~n~ 177 (186)
+=|..|+|+-|+.+- ..+. -..++..+.+.+++.+|++...
T Consensus 81 lgl~~F~P~~QD~~A~~Li~-~rgal~~i~~G~i~~a~~~la~ 122 (158)
T 1am7_A 81 LGLKDFSPKSQDAVALQQIK-ERGALPMIDRGDIRQAIDRCSN 122 (158)
T ss_dssp HTCCCCCHHHHHHHHHHHHH-HTTCHHHHHHTCHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHHH-HcCcHHHHHcCCHHHHHHHhcc
Confidence 336789999999885 3444 3456888888889999988764
No 24
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=33.46 E-value=91 Score=20.74 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=27.9
Q ss_pred ccCCCHHHHHHHHHHHHHH---HHHHHHHHHhCHHHHHHhhhcc
Q 029850 138 LQKFSPIEREQIDAALEQG---VEAVRTLVLNGFDQNISRFNMG 178 (186)
Q Consensus 138 L~~fs~~E~~~l~~~~~~a---~~~~~~~~~~~~~~~m~~~n~~ 178 (186)
-++||+||-++|-+++..- ...|...+...-..+.++|+.-
T Consensus 23 k~~wT~EED~~L~~l~~~~G~kW~~IA~~lgRt~~q~knRw~~L 66 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLM 66 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSCHHHHHHHHTSCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3799999999987777653 2333333355577888888753
No 25
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=33.21 E-value=57 Score=23.10 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=25.3
Q ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 029850 134 KAYLLQKFSPIEREQIDAALEQGVEAVRTLV 164 (186)
Q Consensus 134 ~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~~ 164 (186)
.+-+++.|+++|++.+..++.+..+.++.+.
T Consensus 118 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 148 (151)
T 3kp7_A 118 ASDMTSDFDSKEIEKVRQVLEIIDYRIQSYT 148 (151)
T ss_dssp HHHTTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999998888887776654
No 26
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=32.49 E-value=29 Score=26.99 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.8
Q ss_pred hhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 59 GESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 59 G~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
|.++..+++.+++++++++.|=|..
T Consensus 196 ~~~l~~l~~~lgi~~~~~ia~GD~~ 220 (268)
T 3r4c_A 196 ATGLSLFADYYRVKVSEIMACGDGG 220 (268)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHcCCCHHHEEEECCcH
Confidence 6889999999999999999999964
No 27
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=32.46 E-value=29 Score=26.89 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.8
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
-|.++..+++.++++++++++|=|..
T Consensus 201 K~~~l~~l~~~lgi~~~~~i~~GD~~ 226 (274)
T 3fzq_A 201 KGKAIKRLQERLGVTQKETICFGDGQ 226 (274)
T ss_dssp HHHHHHHHHHHHTCCSTTEEEECCSG
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCCh
Confidence 46788999999999999999999854
No 28
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=32.22 E-value=33 Score=25.09 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=24.2
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
++..+..+++.++++++++++|=|.+
T Consensus 159 k~~~~~~~~~~lgi~~~~~i~iGD~~ 184 (234)
T 3ddh_A 159 TEKEYLRLLSILQIAPSELLMVGNSF 184 (234)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEEESCC
T ss_pred CHHHHHHHHHHhCCCcceEEEECCCc
Confidence 68889999999999999999999986
No 29
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=30.78 E-value=38 Score=23.51 Aligned_cols=21 Identities=19% Similarity=0.217 Sum_probs=18.0
Q ss_pred HHcCCCCCcEEEEeeccCCCCc
Q 029850 67 AHYQVPLRHILVIYDEMSLMNG 88 (186)
Q Consensus 67 ~~~~i~~~~ilVvhDdldl~~G 88 (186)
+..+++++++.|+.+|++ .+|
T Consensus 86 ~~lgi~~~~v~I~~~e~~-~wg 106 (112)
T 3b64_A 86 KECGIVADRIFVLYFSPL-HCG 106 (112)
T ss_dssp HHHCCCGGGEEEEEECCS-CCE
T ss_pred HHhCcCcceEEEEEEEhh-Hee
Confidence 457999999999999998 665
No 30
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=30.45 E-value=32 Score=27.04 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=22.9
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
-|.++..+++.++++++++++|=|..
T Consensus 203 K~~~l~~l~~~lgi~~~~~i~~GD~~ 228 (290)
T 3dnp_A 203 KEAGLALVASELGLSMDDVVAIGHQY 228 (290)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCch
Confidence 47788999999999999999999953
No 31
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=30.32 E-value=29 Score=26.96 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=21.6
Q ss_pred hhhHHHHHHHcCCCCCcEEEEeec
Q 029850 59 GESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 59 G~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
|.++..+++.++++++++++|=|.
T Consensus 185 ~~~l~~l~~~lgi~~~~~ia~GDs 208 (258)
T 2pq0_A 185 AEGIRMMIEKLGIDKKDVYAFGDG 208 (258)
T ss_dssp HHHHHHHHHHHTCCGGGEEEECCS
T ss_pred HHHHHHHHHHhCCCHHHEEEECCc
Confidence 667899999999999999999884
No 32
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=30.30 E-value=31 Score=26.98 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.9
Q ss_pred hhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 59 GESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 59 G~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
|.++..+++.++++++++++|=|..
T Consensus 199 ~~~l~~l~~~lgi~~~~~i~~GD~~ 223 (279)
T 4dw8_A 199 ALSLSVLLENIGMTREEVIAIGDGY 223 (279)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHcCCCHHHEEEECCCh
Confidence 8899999999999999999999953
No 33
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=30.28 E-value=37 Score=24.97 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=25.3
Q ss_pred chhhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029850 133 MKAYLLQKFSPIEREQIDAALEQGVEAVRTLVL 165 (186)
Q Consensus 133 v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~~~ 165 (186)
..+-+++.|+++|++.+..++.+..+.++.+..
T Consensus 132 ~~~~~~~~l~~~e~~~l~~~L~~l~~~l~~~~~ 164 (166)
T 3deu_A 132 TRGEILAGISSEEIELLIKLIAKLEHNIMELHS 164 (166)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345678899999999999988888887776543
No 34
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=29.60 E-value=34 Score=27.19 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=22.8
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
-|.++..+++.++++++++++|=|..
T Consensus 212 K~~~l~~l~~~lgi~~~e~ia~GD~~ 237 (283)
T 3dao_A 212 KWTALSYLIDRFDLLPDEVCCFGDNL 237 (283)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHHhCCCHHHEEEECCCH
Confidence 46789999999999999999999853
No 35
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=29.45 E-value=34 Score=27.13 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=23.3
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
-|.++..+++.++++++++++|=|..
T Consensus 210 K~~al~~l~~~lgi~~~~~ia~GD~~ 235 (285)
T 3pgv_A 210 KGHALEAVAKMLGYTLSDCIAFGDGM 235 (285)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred hHHHHHHHHHHhCCCHHHEEEECCcH
Confidence 47889999999999999999999964
No 36
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=29.16 E-value=15 Score=23.29 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Q 029850 141 FSPIEREQIDAALEQGVEAVRTLVLNGFDQNIS 173 (186)
Q Consensus 141 fs~~E~~~l~~~~~~a~~~~~~~~~~~~~~~m~ 173 (186)
||+||.+.|+++.+.-+|.+..+++.-+-+++.
T Consensus 8 ~SkEey~~L~klA~eE~eSV~sfIKR~IlK~lr 40 (55)
T 1x93_A 8 FSDEQYQKLEKMANEEEESVGSYIKRYILKALR 40 (55)
T ss_dssp ECHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHT
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999888888888888766666553
No 37
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=29.14 E-value=43 Score=25.53 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=24.6
Q ss_pred CCccccchhhHHHHHHHcCCCCCcEEEEeeccCCC
Q 029850 52 QAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLM 86 (186)
Q Consensus 52 ~TyMN~SG~~V~~~~~~~~i~~~~ilVvhDdldl~ 86 (186)
.+|+|+.+.+++++++.+. ++++|||..=.-|
T Consensus 27 ~~~v~Rgk~sl~~L~~~~~---~~~iVV~e~rg~P 58 (156)
T 1w94_A 27 WRYINRGKMSLRDVLIEAR---GPVAVVSERHGNP 58 (156)
T ss_dssp CEECCCTTCCHHHHHHHHS---SCEEEEEEETTEE
T ss_pred CEEEeeCCcCHHHHHHhcC---CCEEEEEcCCCCC
Confidence 4699999999999998764 3488888877443
No 38
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=28.78 E-value=31 Score=27.02 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=20.9
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeec
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDE 82 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDd 82 (186)
-|.++..+++.++++++++++|=|.
T Consensus 198 K~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 3mpo_A 198 KGGTLSELVDQLGLTADDVMTLGDQ 222 (279)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEC--C
T ss_pred hHHHHHHHHHHcCCCHHHEEEECCc
Confidence 5788999999999999999999884
No 39
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=28.33 E-value=36 Score=27.31 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.2
Q ss_pred hhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 59 GESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 59 G~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
|.++..+++.++++++++++|=|..
T Consensus 230 ~~al~~l~~~lgi~~~e~i~~GDs~ 254 (304)
T 3l7y_A 230 GWALQQLLKRWNFTSDHLMAFGDGG 254 (304)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHhCcCHHHEEEECCCH
Confidence 5589999999999999999999953
No 40
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=27.60 E-value=60 Score=20.77 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=20.8
Q ss_pred cchhhHH-HHHHHcCCCCCcEEEEe------eccCC-----CCc-e--EEEccCCCCCCCCc
Q 029850 57 FSGESVG-PLAAHYQVPLRHILVIY------DEMSL-----MNG-V--LRLQPKGGHGHHNG 103 (186)
Q Consensus 57 ~SG~~V~-~~~~~~~i~~~~ilVvh------Ddldl-----~~G-~--irlk~~Gs~~GHNG 103 (186)
.+=..++ .+....++|+++.-+++ ||..| .-| . +-+|..|+.+|+.|
T Consensus 24 ~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ggg~~ 85 (85)
T 3mtn_B 24 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGGGGSG 85 (85)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC------
T ss_pred CCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCCCCCC
Confidence 3444443 33456789888765555 33222 222 2 23466677777665
No 41
>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}
Probab=24.68 E-value=25 Score=26.12 Aligned_cols=26 Identities=8% Similarity=-0.091 Sum_probs=22.5
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
++..+..+++.++++++++++|=|..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~vGD~~ 182 (230)
T 3vay_A 157 DPAPFLEALRRAKVDASAAVHVGDHP 182 (230)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEEESCT
T ss_pred CHHHHHHHHHHhCCCchheEEEeCCh
Confidence 35567888999999999999999986
No 42
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=24.61 E-value=93 Score=21.77 Aligned_cols=32 Identities=16% Similarity=0.057 Sum_probs=24.6
Q ss_pred chhhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 029850 133 MKAYLLQKFSPIEREQIDAALEQGVEAVRTLV 164 (186)
Q Consensus 133 v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~~~ 164 (186)
..+.++..++++|++.+..++.+..+.++...
T Consensus 118 ~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 149 (152)
T 3bj6_A 118 KLALFSEGFSSVELTAYHKVQLALTRFFADLA 149 (152)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 34567789999999999888888877766543
No 43
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=24.60 E-value=62 Score=22.69 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=23.5
Q ss_pred chhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850 133 MKAYLLQKFSPIEREQIDAALEQGVEAVRT 162 (186)
Q Consensus 133 v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~ 162 (186)
..+-++..++++|.+.+..++.+..+.++.
T Consensus 118 ~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~ 147 (148)
T 3nrv_A 118 REKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 345678899999999998888887776653
No 44
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=23.77 E-value=49 Score=24.20 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=18.2
Q ss_pred HHcCCCCCcEEEEeeccCCCCc
Q 029850 67 AHYQVPLRHILVIYDEMSLMNG 88 (186)
Q Consensus 67 ~~~~i~~~~ilVvhDdldl~~G 88 (186)
+.++++++++.|...|++ .+|
T Consensus 107 ~~LgI~~~rvyI~f~d~~-~wg 127 (133)
T 3fwt_A 107 KECGIPAERIYVFYYSTK-HCG 127 (133)
T ss_dssp HHHCCCGGGEEEEEEEES-CCE
T ss_pred HHhCcChhhEEEEEEEhh-hEe
Confidence 457999999999999998 665
No 45
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=23.00 E-value=21 Score=23.49 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Q 029850 141 FSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 172 (186)
Q Consensus 141 fs~~E~~~l~~~~~~a~~~~~~~~~~~~~~~m 172 (186)
||+||.+.|+++.+.-+|.+..+++.-+-+++
T Consensus 22 ~SkEey~~L~klA~eE~eSV~sfIKR~IlK~l 53 (66)
T 2k1o_A 22 LSKEEHDVLRRLADEEVESVNSFVKRHILKTI 53 (66)
T ss_dssp EEHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999888888888888876554443
No 46
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=22.99 E-value=92 Score=21.57 Aligned_cols=29 Identities=7% Similarity=-0.020 Sum_probs=22.1
Q ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850 134 KAYLLQKFSPIEREQIDAALEQGVEAVRT 162 (186)
Q Consensus 134 ~~yVL~~fs~~E~~~l~~~~~~a~~~~~~ 162 (186)
.+-+++.++++|.+.+.+++.+..+.++.
T Consensus 115 ~~~~~~~l~~~e~~~l~~~l~~~~~~l~~ 143 (146)
T 2gxg_A 115 ANEVTGDLSEDEVILVLDKISKILKRIEE 143 (146)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 34577889999998888888877776653
No 47
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=22.90 E-value=70 Score=21.98 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=22.6
Q ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850 134 KAYLLQKFSPIEREQIDAALEQGVEAVRT 162 (186)
Q Consensus 134 ~~yVL~~fs~~E~~~l~~~~~~a~~~~~~ 162 (186)
.+.++..++++|.+.+.+++.+..+.++.
T Consensus 108 ~~~~~~~l~~~e~~~l~~~l~~~~~~l~~ 136 (138)
T 3bpv_A 108 EDLLFRDFTEDERKLFRKMCRRLAEEAVR 136 (138)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 45677899999999998888877766543
No 48
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14
Probab=22.83 E-value=52 Score=24.35 Aligned_cols=26 Identities=12% Similarity=0.090 Sum_probs=22.3
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
.+.++..+++.++++++++++|=|.+
T Consensus 178 k~~~~~~~~~~lgi~~~~~i~iGD~~ 203 (250)
T 2c4n_A 178 SPWIIRAALNKMQAHSEETVIVGDNL 203 (250)
T ss_dssp STHHHHHHHHHHTCCGGGEEEEESCT
T ss_pred CHHHHHHHHHHcCCCcceEEEECCCc
Confidence 45677888999999999999999974
No 49
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=22.65 E-value=66 Score=23.36 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=23.2
Q ss_pred chhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850 133 MKAYLLQKFSPIEREQIDAALEQGVEAVRT 162 (186)
Q Consensus 133 v~~yVL~~fs~~E~~~l~~~~~~a~~~~~~ 162 (186)
+.+-+++.|+++|++.+..++++..+-+..
T Consensus 110 ~~~~~~~~l~~ee~~~l~~~L~kl~~nl~~ 139 (151)
T 4aik_A 110 TRKEILGGISSDEIAVLSGLIDKLEKNIIQ 139 (151)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999998888776665544
No 50
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}
Probab=22.44 E-value=56 Score=24.70 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.6
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
.+.++..+++.++++++++++|=|..
T Consensus 192 k~~~~~~~~~~lgi~~~~~i~iGD~~ 217 (271)
T 2x4d_A 192 SPEFFKSALQAIGVEAHQAVMIGDDI 217 (271)
T ss_dssp CHHHHHHHHHHHTCCGGGEEEEESCT
T ss_pred CHHHHHHHHHHhCCCcceEEEECCCc
Confidence 46778888999999999999999954
No 51
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=22.41 E-value=72 Score=22.82 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=22.0
Q ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHH
Q 029850 134 KAYLLQKFSPIEREQIDAALEQGVEAVRT 162 (186)
Q Consensus 134 ~~yVL~~fs~~E~~~l~~~~~~a~~~~~~ 162 (186)
.+.++..|+++|++.+..++.+..+.++.
T Consensus 129 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~ 157 (159)
T 3s2w_A 129 GEILFSSFDDRQRREITNSLEIMFENGLK 157 (159)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 45577888999988888888877776654
No 52
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Probab=20.91 E-value=63 Score=23.27 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.8
Q ss_pred hhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 59 GESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 59 G~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
+..+..+++.++++++++++|=|..
T Consensus 145 ~~~l~~~~~~lgi~~~~~~~iGD~~ 169 (211)
T 1l7m_A 145 GEILEKIAKIEGINLEDTVAVGDGA 169 (211)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHcCCCHHHEEEEecCh
Confidence 6778888999999999999998864
No 53
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=20.85 E-value=69 Score=23.53 Aligned_cols=26 Identities=27% Similarity=0.116 Sum_probs=23.0
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
++..+..+++.++++++++++|=|.+
T Consensus 164 ~~~~~~~~~~~lgi~~~~~~~iGD~~ 189 (240)
T 3qnm_A 164 RPEIFHFALSATQSELRESLMIGDSW 189 (240)
T ss_dssp SHHHHHHHHHHTTCCGGGEEEEESCT
T ss_pred CHHHHHHHHHHcCCCcccEEEECCCc
Confidence 46678889999999999999999986
No 54
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.78 E-value=96 Score=21.40 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=22.2
Q ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHH
Q 029850 134 KAYLLQKFSPIEREQIDAALEQGVEAVR 161 (186)
Q Consensus 134 ~~yVL~~fs~~E~~~l~~~~~~a~~~~~ 161 (186)
.+-+++.++++|.+.+..++.+..+.++
T Consensus 117 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~ 144 (146)
T 2fbh_A 117 RNDVLTGIDESEQALCQQVLLRILANLE 144 (146)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4557789999999999888887776654
No 55
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=20.07 E-value=63 Score=25.07 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=22.2
Q ss_pred chhhHHHHHHHcCCCCCcEEEEeecc
Q 029850 58 SGESVGPLAAHYQVPLRHILVIYDEM 83 (186)
Q Consensus 58 SG~~V~~~~~~~~i~~~~ilVvhDdl 83 (186)
-|.++..+++.++++++++++|=|..
T Consensus 188 K~~~~~~~~~~~~~~~~~~~~iGD~~ 213 (261)
T 2rbk_A 188 KQKGIDEIIRHFGIKLEETMSFGDGG 213 (261)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECSG
T ss_pred hHHHHHHHHHHcCCCHHHEEEECCCH
Confidence 36677889999999999999999863
Done!