RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 029850
         (186 letters)



>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
           Crs2 {Maize (Zea mays) [TaxId: 4577]}
          Length = 191

 Score =  137 bits (345), Expect = 7e-42
 Identities = 123/169 (72%), Positives = 145/169 (85%)

Query: 11  VGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 70
           VGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE++GPLAA+YQ
Sbjct: 23  VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQ 82

Query: 71  VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGK 130
           VPLRHIL+IYD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG+PPGK
Sbjct: 83  VPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGK 142

Query: 131 MDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 179
           MD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF  +  RFN+ Q
Sbjct: 143 MDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ 191


>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli
           [TaxId: 562]}
          Length = 193

 Score =  124 bits (312), Expect = 8e-37
 Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 1/167 (0%)

Query: 11  VGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 69
            G   +D +A+  R  +    +        ++G   + L  P  +MN SG++V  +A+ +
Sbjct: 22  AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF 81

Query: 70  QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPG 129
           ++    ILV +DE+ L  GV + +  GGHG HNGLK +++ L     F RL IGIG+P  
Sbjct: 82  RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGD 141

Query: 130 KMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 176
           K  +  ++L K    E++ ID A+++          +G  +  +R +
Sbjct: 142 KNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLH 188


>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA
           {Bacillus subtilis [TaxId: 1423]}
          Length = 167

 Score = 26.9 bits (59), Expect = 1.1
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 68  HYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLC-----I 122
           H +V    +  + +++ L  GV+  +  G  G   G++S+   L+      +       +
Sbjct: 84  HIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWML 143

Query: 123 GIGNPPGKMDMKAYLLQKFSPIER 146
              NP     + A   ++  P  +
Sbjct: 144 NYSNP---AAIVAEATRRLRPNSK 164


>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Escherichia coli [TaxId: 562]}
          Length = 228

 Score = 24.7 bits (53), Expect = 6.8
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 8/46 (17%)

Query: 74  RHILVIYD---EMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCRE 116
           RH+ +I D     +   G +R       GH  G KSV   +     
Sbjct: 7   RHVAIIMDGNGRWAKKQGKIRA-----FGHKAGAKSVRRAVSFAAN 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.413 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 696,934
Number of extensions: 31391
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 7
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)