BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029854
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 279 bits (714), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 131/174 (75%), Positives = 145/174 (83%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
ATIGVEVHPL F+TN G+I+F WDTAG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKN
Sbjct: 43 ATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 102
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 103 VPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKP 162
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 182
FL+LARKLAG+P L FV SPALAPPEVQ+D + PLPD+DD
Sbjct: 163 FLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 216
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 272 bits (695), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 128/175 (73%), Positives = 141/175 (80%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+GVEVHPL F TN G I+F WDTAGQEKFGGLRDGYYI QCAIIMFDVT+R+TYKN
Sbjct: 46 ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 105
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 106 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 165
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
FL+LARKL GDPNL FV PALAPPEV +D + LPD+DDD
Sbjct: 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 220
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 271 bits (694), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 128/175 (73%), Positives = 141/175 (80%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+GVEVHPL F TN G I+F WDTAGQEKFGGLRDGYYI QCAIIMFDVT+R+TYKN
Sbjct: 41 ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
FL+LARKL GDPNL FV PALAPPEV +D + LPD+DDD
Sbjct: 161 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 271 bits (693), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 128/175 (73%), Positives = 141/175 (80%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+GVEVHPL F TN G I+F WDTAGQEKFGGLRDGYYI QCAIIMFDVT+R+TYKN
Sbjct: 46 ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 105
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 106 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 165
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
FL+LARKL GDPNL FV PALAPPEV +D + LPD+DDD
Sbjct: 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 220
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 270 bits (691), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 127/175 (72%), Positives = 141/175 (80%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+GVEVHPL F TN G I+F WDTAGQEK+GGLRDGYYI QCAIIMFDVT+R+TYKN
Sbjct: 41 ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
FL+LARKL GDPNL FV PALAPPEV +D + LPD+DDD
Sbjct: 161 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 270 bits (689), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 127/175 (72%), Positives = 140/175 (80%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+GVEVHPL F TN G I+F WDTAGQEKFGGL DGYYI QCAIIMFDVT+R+TYKN
Sbjct: 41 ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
FL+LARKL GDPNL FV PALAPPEV +D + LPD+DDD
Sbjct: 161 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 270 bits (689), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 127/174 (72%), Positives = 140/174 (80%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
T+GVEVHPL F TN G I+F WDTAGQEKFGGLRDGYYI QCAIIMFDVT+R+TYKNV
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 70 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
P WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPF
Sbjct: 102 PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
L+LARKL GDPNL FV PALAPPEV +D + LPD+DDD
Sbjct: 162 LWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 268 bits (686), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 127/175 (72%), Positives = 140/175 (80%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+GVEVHPL F TN G I+F WDTAGQEKFGGLRDGYYI QCAIIMFDVT+R+TYKN
Sbjct: 41 ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
FL+LARKL GDPNL FV P LAPPEV +D + LPD+DDD
Sbjct: 161 FLWLARKLIGDPNLEFVAMPCLAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 268 bits (686), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 127/175 (72%), Positives = 140/175 (80%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+GVEVHPL F TN G I+F WDTAG EKFGGLRDGYYI QCAIIMFDVT+R+TYKN
Sbjct: 41 ATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
FL+LARKL GDPNL FV PALAPPEV +D + LPD+DDD
Sbjct: 161 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 268 bits (684), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 127/175 (72%), Positives = 139/175 (79%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+GVEVHPL F TN G I+F WDTAGQEKFGGLRDGYYI QCAII FDVT+R+TYKN
Sbjct: 41 ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKN 100
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
FL+LARKL GDPNL FV PALAPPEV D + LPD+DDD
Sbjct: 161 FLWLARKLIGDPNLEFVAXPALAPPEVVXDPALAAQYEHDLEVAQTTALPDEDDD 215
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 264 bits (675), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 125/171 (73%), Positives = 137/171 (80%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+GVEVHPL F TN G I+F WDTAGQEKFGGLRDGYYI QCAIIMFDVT+R+TYKN
Sbjct: 34 ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 93
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 94 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 153
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPD 179
FL+LARKL GDPNL FV PALAPPEV +D + LPD
Sbjct: 154 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPD 204
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 245 bits (626), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/137 (83%), Positives = 125/137 (91%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
ATIGVEVHPL F+TN G+I+F WDTAG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKN
Sbjct: 35 ATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 94
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 95 VPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKP 154
Query: 129 FLYLARKLAGDPNLHFV 145
FL+LARKLAG+P L FV
Sbjct: 155 FLWLARKLAGNPQLEFV 171
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 245 bits (625), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/137 (83%), Positives = 125/137 (91%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
ATIGVEVHPL F+TN G+I+F WDTAG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKN
Sbjct: 36 ATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 95
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 96 VPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKP 155
Query: 129 FLYLARKLAGDPNLHFV 145
FL+LARKLAG+P L FV
Sbjct: 156 FLWLARKLAGNPQLEFV 172
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 243 bits (620), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 113/140 (80%), Positives = 123/140 (87%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+GVEVHPL F TN G I+F WDTAG EKFGGLRDGYYI QCAIIMFDVT+R+TYKN
Sbjct: 43 ATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 102
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 103 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 162
Query: 129 FLYLARKLAGDPNLHFVESP 148
FL+LARKL GDPNL FV P
Sbjct: 163 FLWLARKLIGDPNLEFVAMP 182
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 242 bits (618), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 113/140 (80%), Positives = 123/140 (87%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+GVEVHPL F TN G I+F WDTAG EKFGGLRDGYYI QCAIIMFDVT+R+TYKN
Sbjct: 37 ATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 96
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 97 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 156
Query: 129 FLYLARKLAGDPNLHFVESP 148
FL+LARKL GDPNL FV P
Sbjct: 157 FLWLARKLIGDPNLEFVAMP 176
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 242 bits (617), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 112/136 (82%), Positives = 122/136 (89%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+GVEVHPL F TN G I+F WDTAGQEKFGGLRDGYYI QCAIIMFDVT+R+TYKN
Sbjct: 41 ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHF 144
FL+LARKL GDPNL F
Sbjct: 161 FLWLARKLIGDPNLEF 176
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 241 bits (615), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 112/136 (82%), Positives = 122/136 (89%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
T+GVEVHPL F TN G I+F WDTAGQEKFGGLRDGYYI QCAIIMFDVT+R+TYKNV
Sbjct: 42 TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 70 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
P WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPF
Sbjct: 102 PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
Query: 130 LYLARKLAGDPNLHFV 145
L+LARKL GDPNL FV
Sbjct: 162 LWLARKLIGDPNLEFV 177
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 98/154 (63%), Gaps = 4/154 (2%)
Query: 9 ATIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
AT+G HP+ F + G I+F WDTAGQEK L+D YYI AI+ FDVT+R+T +
Sbjct: 42 ATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQ 101
Query: 68 NVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYN 124
N+ W ++ V N PIV+C NK+D+KNRQ +K++ + KN +Y+EISAK+ +N
Sbjct: 102 NLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161
Query: 125 FEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 158
F PFL+LAR G P+L FV + L P EV D
Sbjct: 162 FGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYD 195
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
KATIG + + + + WDTAGQE+F L +Y C +++FDVTA T+K
Sbjct: 38 KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97
Query: 68 NVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAK 120
+ +W + R EN P V+ GNK+D++NRQV K Q + K N+ Y+E SAK
Sbjct: 98 TLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAK 157
Query: 121 SNYNFEKPFLYLAR 134
N E+ F +AR
Sbjct: 158 EAINVEQAFQTIAR 171
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
KATIG + + + + WDTAGQE+F L +Y C +++FDVTA T+K
Sbjct: 38 KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97
Query: 68 NVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAK 120
+ +W + R EN P V+ GNK+D++NRQV K Q + K N+ Y+E SAK
Sbjct: 98 TLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAK 157
Query: 121 SNYNFEKPFLYLAR 134
N E+ F +AR
Sbjct: 158 EAINVEQAFQTIAR 171
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
KATIG + + + + WDTAGQE+F L +Y C +++FDVTA T+K
Sbjct: 38 KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97
Query: 68 NVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAK 120
+ +W + R EN P V+ GNK+D +NRQV K Q + K N+ Y+E SAK
Sbjct: 98 TLDSWRDEFLIQASPRDPENFPFVVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAK 157
Query: 121 SNYNFEKPFLYLAR 134
N E+ F +AR
Sbjct: 158 EAINVEQAFQTIAR 171
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
KATIG + + + + WDTAG E+F L +Y C +++FDVTA T+K
Sbjct: 38 KATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97
Query: 68 NVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAK 120
+ +W + R EN P V+ GNK+D++NRQV K Q + K N+ Y+E SAK
Sbjct: 98 TLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAK 157
Query: 121 SNYNFEKPFLYLAR 134
N E+ F +AR
Sbjct: 158 EAINVEQAFQTIAR 171
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
ATIGV+ N K++ WDTAGQE+F + YY I+ +D+T +++
Sbjct: 57 ATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRC 116
Query: 69 VPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNF 125
+P W R++ + N + VL GNK+D+ R+ ++Q F +++ Y E SAK + N
Sbjct: 117 LPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNV 176
Query: 126 EKPFLYLARKLAGDP 140
EK FL LA +L +
Sbjct: 177 EKLFLDLACRLISEA 191
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIGVE ++ WDTAGQE+F + YY A++++D+T+R TY +
Sbjct: 42 TIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL 101
Query: 70 PTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFE 126
W D + +NI I+LCGNK D+ +R+V + + F ++ L + E SA + N E
Sbjct: 102 TNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVE 161
Query: 127 KPFLYLARKLAGDPNLHFVESPALAPPEV 155
+ F+ ARK+ L+ +ES L P +
Sbjct: 162 EAFVQCARKI-----LNKIESGELDPERM 185
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
ATIGV+ + K + WDTAGQE+F L YY Q I+++DVT R T+
Sbjct: 46 ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVK 105
Query: 69 VPTWHRDLCRVCENIPIV--LCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNF 125
+ W +L C IV L GNK+D +NR+V + + + F RK + + E SAK+
Sbjct: 106 LDNWLNELETYCTRNDIVNXLVGNKIDKENREVDRNEGLKFARKHSXLFIEASAKTCDGV 165
Query: 126 EKPFLYLARKLAGDPNLHFVESPALAPP 153
+ F L K+ P L E+ P
Sbjct: 166 QCAFEELVEKIIQTPGLWESENQNSGPS 193
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIGVE ++ WDTAGQE+F + YY A++++D+T+R TY ++
Sbjct: 57 TIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSL 116
Query: 70 PTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKAKQVT-FHRKKNLQYYEISAKSNYNFE 126
W D + NI ++LCGNK D+ R+V + + F ++ L + E SA + N E
Sbjct: 117 AAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE 176
Query: 127 KPFLYLARKLAGDPNLHFVESPALAPPEV 155
+ FL AR + L+ ++S L P +
Sbjct: 177 EAFLKCARTI-----LNKIDSGELDPERM 200
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Query: 7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY 66
K+TIGVE + I+ WDTAGQE++ + YY A++++D+ LTY
Sbjct: 34 SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTY 93
Query: 67 KNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNY 123
+NV W ++L NI I+L GNK D+++ R V + F K NL + E SA +
Sbjct: 94 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST 153
Query: 124 NFEKPF 129
N E+ F
Sbjct: 154 NVEEAF 159
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 3/130 (2%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIGVE + +I+ WDTAGQE F + YY A++++D+T R T+ ++
Sbjct: 42 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHL 101
Query: 70 PTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFE 126
TW D + N+ I+L GNK D+++R+ K+ F R+ L + E SAK+ N E
Sbjct: 102 TTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVE 161
Query: 127 KPFLYLARKL 136
+ F+ A+++
Sbjct: 162 EAFINTAKEI 171
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
Query: 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT 65
+ ++TIG + ++F WDTAGQE++ L YY Q AI+++D+T + T
Sbjct: 36 YQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQET 95
Query: 66 YKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSN 122
+ TW ++L R +I I L GNK D+ N R V+ ++ + N L + E SAK+
Sbjct: 96 FARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTA 155
Query: 123 YNFEKPFLYLARKL 136
N FL +A+KL
Sbjct: 156 MNVNDLFLAIAKKL 169
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIGVE + KI+ WDTAGQE+F + YY A++++D+T R TY ++
Sbjct: 47 TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL 106
Query: 70 PTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQV---KAKQVTFHRKKNLQYYEISAKSNYN 124
+W D + N I+L GNK D++ R V +AKQ F + L + E SAK+ N
Sbjct: 107 SSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGEN 164
Query: 125 FEKPFLYLARKL 136
E FL A+K+
Sbjct: 165 VEDAFLEAAKKI 176
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
++TIG N ++F WDTAGQE++ L YY AII+FDVT + +++
Sbjct: 42 ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFE 101
Query: 68 NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
W ++L + N+ + L GNK D+ + R+V A+ T+ ++ L + E SAK+ N
Sbjct: 102 RAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN 161
Query: 125 FEKPFLYLARKL 136
++ F +AR+L
Sbjct: 162 VKEIFYEIARRL 173
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIGVE ++ WDTAGQE+F + YY A++++D+T+R TY +
Sbjct: 43 TIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL 102
Query: 70 PTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFE 126
W D + +NI I+LCGNK D+ +R+V + + F ++ L + E SA + + E
Sbjct: 103 TNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVE 162
Query: 127 KPFLYLARKL 136
+ F+ ARK+
Sbjct: 163 EAFVQCARKI 172
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
K TIGV+ N +R WDTAGQE+F + YY Q +++F T R +++
Sbjct: 35 KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFE 94
Query: 68 NVPTWHRDLCRVCENIPIVLCGNKVD------VKNRQVKAKQVTFHRKKNLQYYEISAKS 121
+ +W + +IP L NK+D +KN + + ++ L++Y S K
Sbjct: 95 AISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEG----LAKRLKLRFYRTSVKE 150
Query: 122 NYNFEKPFLYLARK 135
+ N + F YLA K
Sbjct: 151 DLNVSEVFKYLAEK 164
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
K+TIGVE + I+ WDTAGQE++ + YY A++++D+ LTY+
Sbjct: 59 KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYE 118
Query: 68 NVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
NV W ++L NI I+L GNK D+++ R V + F K L + E SA + N
Sbjct: 119 NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 178
Query: 125 FEKPF 129
E F
Sbjct: 179 VEAAF 183
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
K+TIGVE + I+ WDTAGQE++ + YY A++++D+ LTY+
Sbjct: 50 KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYE 109
Query: 68 NVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
NV W ++L NI I+L GNK D+++ R V + F K L + E SA + N
Sbjct: 110 NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 169
Query: 125 FEKPF 129
E F
Sbjct: 170 VEAAF 174
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
++TIG + ++F WDTAGQE++ L YY Q AI+++D+T ++
Sbjct: 37 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 96
Query: 68 NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
W ++L R NI I L GNK D+ N R V ++ + N L + E SAK++ N
Sbjct: 97 RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 156
Query: 125 FEKPFLYLARKL 136
+ F+ +A+KL
Sbjct: 157 VNEIFMAIAKKL 168
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIGVE + +I+ WDTAGQE F + YY A++++D+T R T+ ++
Sbjct: 53 TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 112
Query: 70 PTWHRDLCR-VCENIPIVLCGNKVDVKNRQ-VKAKQ-VTFHRKKNLQYYEISAKSNYNFE 126
+W D + N+ I+L GNK D+++R+ VK ++ F R+ L + E SAK+ N E
Sbjct: 113 TSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE 172
Query: 127 KPFLYLARKL 136
+ F+ A+++
Sbjct: 173 EAFINTAKEI 182
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIGVE + KI+ WDTAGQ +F + YY A++++D+T R TY ++
Sbjct: 62 TIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHL 121
Query: 70 PTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQV---KAKQVTFHRKKNLQYYEISAKSNYN 124
+W D + N I+L GNK D++ R V +AKQ F + L + E SAK+ N
Sbjct: 122 SSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGEN 179
Query: 125 FEKPFLYLARKL 136
E FL A+K+
Sbjct: 180 VEDAFLEAAKKI 191
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
++TIG + ++F WDTAGQE++ L YY Q AI+++D+T ++
Sbjct: 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 68 NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
W ++L R NI I L GNK D+ N R V ++ + N L + E SAK++ N
Sbjct: 96 RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
Query: 125 FEKPFLYLARKL 136
+ F+ +A+KL
Sbjct: 156 VNEIFMAIAKKL 167
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
++TIG + ++F WDTAGQE++ L YY Q AI+++D+T ++
Sbjct: 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 68 NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
W ++L R NI I L GNK D+ N R V ++ + N L + E SAK++ N
Sbjct: 96 RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
Query: 125 FEKPFLYLARKL 136
+ F+ +A+KL
Sbjct: 156 VNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
++TIG + ++F WDTAGQE++ L YY Q AI+++D+T ++
Sbjct: 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 68 NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
W ++L R NI I L GNK D+ N R V ++ + N L + E SAK++ N
Sbjct: 96 RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
Query: 125 FEKPFLYLARKL 136
+ F+ +A+KL
Sbjct: 156 VNEIFMAIAKKL 167
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 75/135 (55%), Gaps = 14/135 (10%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
K+T+GV+ KIR WDTAGQE+F + YY + I+++D+T + T+
Sbjct: 56 KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFD 115
Query: 68 NVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVK-------AKQVTFHRKKNLQYYEIS 118
++P W + + + E+ ++L GNK+D + +R++ A+Q+T +++ E S
Sbjct: 116 DLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQIT-----GMRFCEAS 170
Query: 119 AKSNYNFEKPFLYLA 133
AK N+N ++ FL L
Sbjct: 171 AKDNFNVDEIFLKLV 185
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
++TIG + ++F WDTAGQE++ L YY Q AI+++D+T ++
Sbjct: 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 68 NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
W ++L R NI I L GNK D+ N R V ++ + N L + E SAK++ N
Sbjct: 96 RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
Query: 125 FEKPFLYLARKL 136
+ F+ +A+KL
Sbjct: 156 VNEIFMAIAKKL 167
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIGVE D + + WDTAGQE+F LR +Y C ++ F V +++N+
Sbjct: 43 TIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL 102
Query: 70 PTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSN 122
W ++ + E+ P V+ GNK D+K RQV ++ K N Y+E SAK +
Sbjct: 103 SNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDS 162
Query: 123 YNFEKPFLYLARKL 136
N F R++
Sbjct: 163 TNVAAAFEEAVRRI 176
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
++TIG + ++F WDTAGQE++ L YY Q AI+++D+T ++
Sbjct: 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 68 NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
W ++L R NI I L GNK D+ N R V ++ + N L + E SAK++ N
Sbjct: 96 RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
Query: 125 FEKPFLYLARKL 136
+ F+ +A+KL
Sbjct: 156 VNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
++TIG + ++F WDTAGQE++ L YY Q AI+++D+T ++
Sbjct: 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 68 NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
W ++L R NI I L GNK D+ N R V ++ + N L + E SAK++ N
Sbjct: 96 RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
Query: 125 FEKPFLYLARKL 136
+ F+ +A+KL
Sbjct: 156 VNEIFMAIAKKL 167
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
TIGV+ N K++ WDTAGQE+F + YY I+++DVT+ ++ N
Sbjct: 40 TTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVN 99
Query: 69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFE 126
V W ++ + C+++ +L GNK D R+V + F + +Q +E SAK N N E
Sbjct: 100 VKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVE 159
Query: 127 KPF 129
+ F
Sbjct: 160 EMF 162
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT 65
+ ++TIG + ++F WDTAGQE++ L YY Q AI+++D+T T
Sbjct: 31 YQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDT 90
Query: 66 YKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSN 122
+ W ++L R NI I L GNK D+ + R V+ ++ + N L + E SAK+
Sbjct: 91 FARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTA 150
Query: 123 YNFEKPFLYLARKL 136
N + F+ +A+KL
Sbjct: 151 MNVNEIFMAIAKKL 164
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPI 85
++F WDTAGQE++ L YY Q AI+++D+T T+ W ++L R NI I
Sbjct: 54 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 113
Query: 86 VLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 136
L GNK D+ + R V+ ++ + N L + E SAK+ N + F+ +A+KL
Sbjct: 114 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + I+ WDTAGQE+F + YY I+++DVT + +Y N
Sbjct: 40 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYAN 99
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
V W +++ R EN+ +L GNK D+ ++V AK+ F + + E SAK+
Sbjct: 100 VKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKE--FADSLGIPFLETSAKNAT 157
Query: 124 NFEKPFLYLARKL 136
N E+ F+ +A ++
Sbjct: 158 NVEQAFMTMAAEI 170
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + I+ WDTAGQE+F + YY I+++DVT + +Y N
Sbjct: 40 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYAN 99
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
V W +++ R EN+ +L GNK D+ ++V AK+ F + + E SAK+
Sbjct: 100 VKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKE--FADSLGIPFLETSAKNAT 157
Query: 124 NFEKPFLYLARKL 136
N E+ F+ +A ++
Sbjct: 158 NVEQAFMTMAAEI 170
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
++TIG + ++F WDTAGQE++ L YY Q AI+++D+T ++
Sbjct: 37 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFA 96
Query: 68 NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
W ++L R NI I L GNK D+ N R V ++ + N L + E SAK++ N
Sbjct: 97 RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXN 156
Query: 125 FEKPFLYLARKL 136
+ F +A+KL
Sbjct: 157 VNEIFXAIAKKL 168
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIGVE ++ WDTAG E+F + YY A++++D+T+R TY +
Sbjct: 40 TIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNAL 99
Query: 70 PTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFE 126
W D + +NI I+LCGNK D+ +R+V + + F ++ L + E SA + + E
Sbjct: 100 TNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVE 159
Query: 127 KPFLYLARKL 136
+ F+ ARK+
Sbjct: 160 EAFVQCARKI 169
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
K+TIGVE + I+ WDTAG E++ + YY A++++D+ LTY+
Sbjct: 59 KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYE 118
Query: 68 NVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
NV W ++L NI I+L GNK D+++ R V + F K L + E SA + N
Sbjct: 119 NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 178
Query: 125 FEKPF 129
E F
Sbjct: 179 VEAAF 183
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
K+TIGVE + I+ WDTAG E++ + YY A++++D+ LTY+
Sbjct: 38 KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYE 97
Query: 68 NVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
NV W ++L NI I+L GNK D+++ R V + F K L + E SA + N
Sbjct: 98 NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 157
Query: 125 FEKPF 129
E F
Sbjct: 158 VEAAF 162
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 11/136 (8%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
++TIG++ + + G +R WDTAGQE+F L Y AI+++D+T R +++
Sbjct: 31 QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFE 90
Query: 68 NVPTWHRD-LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH------RKKNLQYYEISAK 120
N W +D L +++ I L GNK D+ + ++VT+ ++ N ++E SAK
Sbjct: 91 NTTKWIQDILNERGKDVIIALVGNKTDLGD----LRKVTYEEGXQKAQEYNTXFHETSAK 146
Query: 121 SNYNFEKPFLYLARKL 136
+ +N + F A KL
Sbjct: 147 AGHNIKVLFKKTASKL 162
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
K+TIGVE + I+ WDTAG E++ + YY A++++D+ LTY+
Sbjct: 41 KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYE 100
Query: 68 NVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
NV W ++L NI I L GNK D+++ R V + F K L + E SA + N
Sbjct: 101 NVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 160
Query: 125 FEKPF 129
E F
Sbjct: 161 VEAAF 165
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIGVE D + + WDTAGQE+F LR +Y C ++ F V +++N+
Sbjct: 39 TIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL 98
Query: 70 PTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSN 122
W ++ E+ P V+ GNK+D+ RQV ++ + N Y+E SAK
Sbjct: 99 SNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDA 158
Query: 123 YNFEKPFLYLARKL 136
N F R++
Sbjct: 159 TNVAAAFEEAVRRV 172
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + I+ WDTAGQE+F + YY I+++DVT + ++ N
Sbjct: 47 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 106
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
V W +++ R EN+ +L GNK D+ ++V AK+ F + + E SAK+
Sbjct: 107 VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 164
Query: 124 NFEKPFLYLARKL 136
N E+ F+ +A ++
Sbjct: 165 NVEQSFMTMAAEI 177
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
++TIG + ++F WDTAG E++ L YY Q AI+++D+T ++
Sbjct: 35 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFA 94
Query: 68 NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
W ++L R NI I L GNK D+ N R V ++ + N L + E SAK++ N
Sbjct: 95 RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 154
Query: 125 FEKPFLYLARKL 136
+ F+ +A+KL
Sbjct: 155 VNEIFMAIAKKL 166
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
K+TIGVE + I+ WDTAG E++ + YY A++++D+ LTY+
Sbjct: 35 KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYE 94
Query: 68 NVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
NV W ++L NI I L GNK D+++ R V + F K L + E SA + N
Sbjct: 95 NVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 154
Query: 125 FEKPF 129
E F
Sbjct: 155 VEAAF 159
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIGVE D + + WDTAGQE+F LR +Y C ++ F V +++N+
Sbjct: 41 TIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL 100
Query: 70 PTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSN 122
W ++ E+ P V+ GNK+D+ RQV ++ + N Y+E SAK
Sbjct: 101 SNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDA 160
Query: 123 YNFEKPFLYLARKL 136
N F R++
Sbjct: 161 TNVAAAFEEAVRRV 174
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + I+ WDTAGQE+F + YY I+++DVT + ++ N
Sbjct: 37 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 96
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
V W +++ R EN+ +L GNK D+ ++V AK+ F + + E SAK+
Sbjct: 97 VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 154
Query: 124 NFEKPFLYLARKL 136
N E+ F+ +A ++
Sbjct: 155 NVEQSFMTMAAEI 167
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + I+ WDTAGQE+F + YY I+++DVT + ++ N
Sbjct: 47 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 106
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
V W +++ R EN+ +L GNK D+ ++V AK+ F + + E SAK+
Sbjct: 107 VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 164
Query: 124 NFEKPFLYLARKL 136
N E+ F+ +A ++
Sbjct: 165 NVEQSFMTMAAEI 177
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + I+ WDTAGQE+F + YY I+++DVT + ++ N
Sbjct: 30 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 89
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
V W +++ R EN+ +L GNK D+ ++V AK+ F + + E SAK+
Sbjct: 90 VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 147
Query: 124 NFEKPFLYLARKL 136
N E+ F+ +A ++
Sbjct: 148 NVEQSFMTMAAEI 160
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + I+ WDTAGQE+F + YY I+++DVT + ++ N
Sbjct: 56 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 115
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
V W +++ R EN+ +L GNK D+ ++V AK+ F + + E SAK+
Sbjct: 116 VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 173
Query: 124 NFEKPFLYLARKL 136
N E+ F+ +A ++
Sbjct: 174 NVEQSFMTMAAEI 186
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIGVE D + + WDTAGQE+F LR +Y C ++ F V R +++N+
Sbjct: 39 TIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENL 98
Query: 70 PTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAKSN 122
W ++ E+ P V+ GNKVD ++RQV + Q + Y E SAK +
Sbjct: 99 GNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDD 158
Query: 123 YNFEKPFLYLARKL 136
N F R++
Sbjct: 159 TNVTVAFEEAVRQV 172
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + I+ WDTAGQE+F + YY I+++DVT + ++ N
Sbjct: 37 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 96
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
V W +++ R EN+ +L GNK D+ ++V AK+ F + + E SAK+
Sbjct: 97 VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 154
Query: 124 NFEKPFLYLARKL 136
N E+ F+ +A ++
Sbjct: 155 NVEQSFMTMAAEI 167
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ +++ WDTAGQE+F + YY AI+ +D+T R ++ +
Sbjct: 60 STIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLS 119
Query: 69 VPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEI------SAK 120
VP W D+ + NI +L GNK D+ + ++V+ ++L ++Y+I SAK
Sbjct: 120 VPHWIEDVRKYAGSNIVQLLIGNKSDLS----ELREVSLAEAQSLAEHYDILCAIETSAK 175
Query: 121 SNYNFEKPFLYLARKL 136
+ N E+ FL +A +L
Sbjct: 176 DSSNVEEAFLRVATEL 191
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT 65
+ ++TIG + ++F WDTAG E++ L YY Q AI+++D+T T
Sbjct: 33 YQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDT 92
Query: 66 YKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSN 122
+ W ++L R NI I L GNK D+ + R V+ ++ + N L + E SAK+
Sbjct: 93 FARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTA 152
Query: 123 YNFEKPFLYLARKL 136
N + F+ +A+KL
Sbjct: 153 MNVNEIFMAIAKKL 166
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ ++ WDTAGQE+F + YY II++DVT R ++ N
Sbjct: 40 STIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDN 99
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKS 121
V W +++ R EN+ +L GNK D+ +++V VT + L ++ E SAK+
Sbjct: 100 VKQWIQEIDRYAMENVNKLLVGNKCDLVSKRV----VTSDEGRELADSHGIKFIETSAKN 155
Query: 122 NYNFEKPFLYLARKL 136
YN E+ F +A ++
Sbjct: 156 AYNVEQAFHTMAGEI 170
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 11/148 (7%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIG++ + +I+ WDTAGQE+F + YY ++++D+T ++ N
Sbjct: 39 STIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 98
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKS 121
+ W R++ ++ ++ GNK DV ++ +QV+ R + L ++ E SAK+
Sbjct: 99 IRNWIRNIEEHASADVEKMILGNKCDVNDK----RQVSKERGEKLALDYGIKFMETSAKA 154
Query: 122 NYNFEKPFLYLARKLAGDPNLHFVESPA 149
N N E F LAR + + ++ + A
Sbjct: 155 NINVENAFFTLARDIKAKMDKNWKATAA 182
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
+ATIG++ + IR WDTAGQE+F L Y A++++D+T +++
Sbjct: 36 QATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQ 95
Query: 68 NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYN 124
W D+ ++ I+L GNK D+ + RQV ++ K+ N+ + E SAK+ YN
Sbjct: 96 QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 155
Query: 125 FEKPFLYLARKLAG 138
++ F +A L G
Sbjct: 156 VKQLFRRVAAALPG 169
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
+ATIG++ + +R WDTAGQE+F L Y A++++D+T ++
Sbjct: 44 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFH 103
Query: 68 NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYN 124
W D+ ++ I+L GNK D+ + RQV ++ K+ N+ + E SAK+ YN
Sbjct: 104 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 163
Query: 125 FEKPFLYLARKLAG 138
++ F +A L G
Sbjct: 164 VKQLFRRVAAALPG 177
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIG N ++F WDTAGQE+F L YY + Q A++++DVT ++
Sbjct: 35 TIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKA 94
Query: 70 PTWHRDLC-RVCENIPIVLCGNKVDV-----KNRQVKAKQVTFHRKKNLQYYEISAKSNY 123
W ++L + ++I I L GNK+D + + + + +K L ++E SAK+
Sbjct: 95 RHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154
Query: 124 NFEKPFLYLARKL 136
N FL + K+
Sbjct: 155 NVNDVFLGIGEKI 167
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIG++ + +I+ WDTAGQE+F + YY ++++D+T ++ N
Sbjct: 37 STIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 96
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKS 121
+ W R++ ++ ++ GNK DV ++ +QV+ R + L ++ E SAK+
Sbjct: 97 IRNWIRNIEEHASADVEKMILGNKCDVNDK----RQVSKERGEKLALDYGIKFMETSAKA 152
Query: 122 NYNFEKPFLYLARKL 136
N N E F LAR +
Sbjct: 153 NINVENAFFTLARDI 167
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82
N I+F WDTAGQE++ + YY CAI++FD++ T TW L ++ N
Sbjct: 89 NLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL-KISSN 147
Query: 83 IPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
I+L NK+D QV +V + + NL + + SAK+ N + F LA ++
Sbjct: 148 YIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + ++ WDTAGQE+F + YY II++DVT + ++
Sbjct: 52 STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNG 111
Query: 69 VPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNF 125
V W +++ R + + +L GNK D+K+++V V F + + E SA + N
Sbjct: 112 VKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNV 171
Query: 126 EKPFLYLARKL 136
E FL +AR++
Sbjct: 172 EDAFLTMARQI 182
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
TIG++ N K++ WDTAGQE+F + YY I+++DVT T+ N
Sbjct: 38 TTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTN 97
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFE 126
+ W + + + ++L GNK D++ R V A Q ++ + + E SAK++ N
Sbjct: 98 IKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVN 157
Query: 127 KPFLYLAR 134
+ F LA+
Sbjct: 158 EIFFTLAK 165
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
TIG++ N K++ WDTAGQE+F + YY I+++DVT T+ N
Sbjct: 51 TTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTN 110
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFE 126
+ W + + + ++L GNK D++ R V A Q ++ + + E SAK++ N
Sbjct: 111 IKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVN 170
Query: 127 KPFLYLAR 134
+ F LA+
Sbjct: 171 EIFFTLAK 178
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Query: 7 GKATIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT 65
K+TIGVE N I+ WDTAGQE++ + YY A++++D+T + +
Sbjct: 36 SKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNS 95
Query: 66 YKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSN 122
++N+ W ++L + NI I+L GNK D+K+ +V + +K+ L + E SA
Sbjct: 96 FENIEKWLKELRDNADSNIVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEA 155
Query: 123 YNFEKPF 129
N E F
Sbjct: 156 TNVELAF 162
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 70/131 (53%), Gaps = 3/131 (2%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+T+G++ + K++ WDTAGQE+F + YY ++++DVT + ++ N
Sbjct: 42 STVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDN 101
Query: 69 VPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNF 125
+ W ++ + ++ ++L GNKVD + +V ++ ++ L + E SAK+ N
Sbjct: 102 IQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNV 161
Query: 126 EKPFLYLARKL 136
+ F +A++L
Sbjct: 162 DLAFTAIAKEL 172
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
TIG++ N K++ WDTAGQE+F + YY I+++D+T T+ N
Sbjct: 34 TTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTN 93
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFE 126
+ W + + + ++L GNK D++ R V A Q ++ + + E SAK++ N
Sbjct: 94 IKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVN 153
Query: 127 KPFLYLAR 134
+ F LA+
Sbjct: 154 EIFFTLAK 161
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENI 83
K+ WDTAGQE+F L ++ ++MFD+T++ ++ NV W L CEN
Sbjct: 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 84 PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 127
IVL GNK D+ + R+V +Q K + Y+E SA + N EK
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + ++ WDTAGQE+F + YY II++DVT + ++
Sbjct: 39 STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNG 98
Query: 69 VPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNF 125
V W +++ R + + +L GNK D+K+++V V F + + E SA + N
Sbjct: 99 VKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNV 158
Query: 126 EKPFLYLARKL 136
E FL +AR++
Sbjct: 159 EDAFLTMARQI 169
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 7/133 (5%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + I+ WDTAGQE+F + YY I+++DVT + ++ N
Sbjct: 64 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 123
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
V W +++ R EN+ +L GNK D+ ++V AK+ F + + E SAK+
Sbjct: 124 VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 181
Query: 124 NFEKPFLYLARKL 136
N E+ F A ++
Sbjct: 182 NVEQSFXTXAAEI 194
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + ++ WDTAGQE+F + YY II++DVT + ++
Sbjct: 39 STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNG 98
Query: 69 VPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNF 125
V W +++ R + + +L GNK D+K+++V V F + + E SA + N
Sbjct: 99 VKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNV 158
Query: 126 EKPFLYLARKL 136
E FL +AR++
Sbjct: 159 EDAFLTMARQI 169
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
TIG++ N K++ WDTAGQE+F + YY I+++DVT T+ N
Sbjct: 34 TTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTN 93
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFE 126
+ W + + + ++L GNK D + R V A Q ++ + + E SAK++ N
Sbjct: 94 IKQWFKTVNEHANDEAQLLLVGNKSDXETRVVTADQGEALAKELGIPFIESSAKNDDNVN 153
Query: 127 KPFLYLAR 134
+ F LA+
Sbjct: 154 EIFFTLAK 161
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 7/133 (5%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + I+ WDTAGQE+F + YY I+++DVT + ++ N
Sbjct: 39 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 98
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
V W +++ R EN+ +L G K D+ ++V AK+ F + + E SAK+
Sbjct: 99 VKQWLQEIDRYASENVNKLLVGIKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 156
Query: 124 NFEKPFLYLARKL 136
N E+ F+ +A ++
Sbjct: 157 NVEQSFMTMAAEI 169
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
K+TIGVE +I+ WDTAGQE++ + YY A+I++D++ +Y+
Sbjct: 43 KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYE 102
Query: 68 NVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
N W +L +N+ + L GNK D+ + R V ++ TF ++ L + E SA ++ N
Sbjct: 103 NCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSEN 162
Query: 125 FEKPFLYL 132
+K F L
Sbjct: 163 VDKAFEEL 170
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
TIG++ N K++ WDTAGQE+F + YY I+++D+T T+ N
Sbjct: 34 TTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTN 93
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFE 126
+ W + + + ++L GNK D + R V A Q ++ + + E SAK++ N
Sbjct: 94 IKQWFKTVNEHANDEAQLLLVGNKSDXETRVVTADQGEALAKELGIPFIESSAKNDDNVN 153
Query: 127 KPFLYLAR 134
+ F LA+
Sbjct: 154 EIFFTLAK 161
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
+ATIG++ + IR WDTAG E+F L Y A++++D+T +++
Sbjct: 43 QATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQ 102
Query: 68 NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYN 124
W D+ ++ I+L GNK D+ + RQV ++ K+ N+ + E SAK+ YN
Sbjct: 103 QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 162
Query: 125 FEKPFLYLARKLAG 138
++ F +A L G
Sbjct: 163 VKQLFRRVAAALPG 176
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
+ATIG++ + +R WDTAGQE+F L Y A++++D+T +++
Sbjct: 31 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQ 90
Query: 68 NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYN 124
W D+ ++ I+L GNK D+ + RQV ++ K+ N+ + E SAK+ YN
Sbjct: 91 QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 150
Query: 125 FEKPFLYLARKL 136
++ F +A L
Sbjct: 151 VKQLFRRVAAAL 162
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
+ATIG++ + +R WDTAG E+F L Y A++++D+T +++
Sbjct: 46 QATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQ 105
Query: 68 NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYN 124
W D+ ++ I+L GNK D+ + RQV ++ K+ N+ + E SAK+ YN
Sbjct: 106 QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 165
Query: 125 FEKPFLYLARKLAG 138
++ F +A L G
Sbjct: 166 VKQLFRRVAAALPG 179
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
+ATIG++ + +R WDTAG E+F L Y A++++D+T +++
Sbjct: 36 QATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQ 95
Query: 68 NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYN 124
W D+ ++ I+L GNK D+ + RQV ++ K+ N+ + E SAK+ YN
Sbjct: 96 QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 155
Query: 125 FEKPFLYLARKLAG 138
++ F +A L G
Sbjct: 156 VKQLFRRVAAALPG 169
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83
+++ DTAGQE + +RD Y+ G+ + +F +T ++ + + RV EN+
Sbjct: 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 124
Query: 84 PIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
P +L GNK D+++ RQV ++ ++ N+ Y E SAK+ N +K F L R++
Sbjct: 125 PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83
+++ DTAGQE + +RD Y+ G+ + +F +T ++ + + RV EN+
Sbjct: 53 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 112
Query: 84 PIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
P +L GNK D+++ RQV ++ ++ N+ Y E SAK+ N +K F L R++
Sbjct: 113 PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI 85
R DTAGQE+FG +R+ Y G+ +++F VT R +++ + + R + RV + P+
Sbjct: 54 RLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPM 113
Query: 86 VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
+L GNK D+ + RQV ++ R+ + Y E SAK N ++ F L R
Sbjct: 114 ILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR 164
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENI 83
K+ WDTAG E+F L ++ ++MFD+T++ ++ NV W L CEN
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 84 PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 128
IVL GNK D+ + R+V +Q K + Y+E SA + N EK
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
+ATIG++ + +R WDTAGQE+F L Y A++++D+T +++
Sbjct: 32 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQ 91
Query: 68 NVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ--YYEISAKSNYN 124
W D+ ++ I+L GNK D+ +++ + R K L + E SAK+ YN
Sbjct: 92 QTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYN 151
Query: 125 FEKPFLYLARKL 136
++ F +A L
Sbjct: 152 VKQLFRRVASAL 163
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83
+++ DTAGQE + +RD Y+ G+ + +F +T ++ + + RV EN+
Sbjct: 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 110
Query: 84 PIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
P +L GNK D+++ RQV ++ + N+ Y E SAK+ N +K F L R++
Sbjct: 111 PFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENI 83
K+ WDTAG E+F L ++ ++MFD+T++ ++ NV W L CEN
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 84 PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 128
IVL GNK D+ + R+V +Q K + Y+E SA + N EK
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83
+++ DTAGQE + +RD Y+ G+ + +F +T ++ + + RV EN+
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 120
Query: 84 PIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
P +L GNK D+++ RQV ++ ++ N+ Y E SAK+ N +K F L R++
Sbjct: 121 PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+T+G++ + N +I+ WDTAGQE++ + YY I+M+D+T ++
Sbjct: 36 STVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 95
Query: 69 VPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
V W + +N ++L GNK D+++ +V + +Q+ H +++E SAK N
Sbjct: 96 VQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL--GFEFFEASAKDNI 153
Query: 124 NFEKPF 129
N ++ F
Sbjct: 154 NVKQTF 159
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI 85
R DTAGQE+FG +R+ Y G +++F + R ++ V + RV ++ P+
Sbjct: 58 RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV 117
Query: 86 VLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
VL GNK D+++ RQV +++ F ++ Y+E SAK N ++ F L R +
Sbjct: 118 VLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
+ TIGVE ++ WDTAG E++ + YY A+++FD+T TY
Sbjct: 55 RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA 114
Query: 68 NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
V W ++L E I ++L GNK D+ R+V ++ F L + E SA + N
Sbjct: 115 VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 174
Query: 125 FEKPF 129
E F
Sbjct: 175 VELAF 179
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
+ TIGVE ++ WDTAG E++ + YY A+++FD+T TY
Sbjct: 40 RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA 99
Query: 68 NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
V W ++L E I ++L GNK D+ R+V ++ F L + E SA + N
Sbjct: 100 VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 159
Query: 125 FEKPF 129
E F
Sbjct: 160 VELAF 164
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IP 84
++ WDTAGQE+F L YY AI+++D+T +++ V W ++L ++ N I
Sbjct: 68 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC 127
Query: 85 IVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
+ + GNK+D+ K R V ++ ++ ++Y SAK N E+ FL L +++
Sbjct: 128 LCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 22 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-- 79
+C + DTAG E+F +RD Y +GQ +++ +TA+ T+ ++ + RV
Sbjct: 46 VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD 105
Query: 80 CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 136
E++P++L GNK D+++ +V K+ + + N + E SAKS N + F L R++
Sbjct: 106 TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IP 84
++ WDTAGQE+F L YY AI+++D+T +++ V W ++L ++ N I
Sbjct: 54 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC 113
Query: 85 IVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
+ + GNK+D+ K R V ++ ++ ++Y SAK N E+ FL L +++
Sbjct: 114 LCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 22 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-- 79
+C + DTAG E+F +RD Y +GQ +++ +TA+ T+ ++ + RV
Sbjct: 46 VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD 105
Query: 80 CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 136
E++P++L GNK D+++ +V K+ + + N + E SAKS N + F L R++
Sbjct: 106 TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IP 84
++ WDTAGQE+F L YY AI+++D+T +++ V W ++L ++ N I
Sbjct: 54 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC 113
Query: 85 IVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
+ + GNK+D+ K R V ++ ++ ++Y SAK N E+ FL L +++
Sbjct: 114 LCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83
+++ DTAG E + +RD Y+ G+ + +F +T ++ + + RV EN+
Sbjct: 53 EVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 112
Query: 84 PIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
P +L GNK D+++ RQV ++ ++ N+ Y E SAK+ N +K F L R++
Sbjct: 113 PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+GV+ + + WDTAGQE+F + Y+ ++++DVT ++ N
Sbjct: 59 ATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLN 118
Query: 69 VPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVT----FHRKKNLQYY----EIS 118
+ W D+ E +PI+L GNK D+++ Q F K + Y E S
Sbjct: 119 IREWV-DMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETS 177
Query: 119 AKSNYNFEKPFLYLARKL 136
AK N + L+LAR++
Sbjct: 178 AKDGSNIVEAVLHLAREV 195
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENI 83
K+ WDTAG E+F L ++ ++ FD+T++ ++ NV W L CEN
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 84 PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 128
IVL GNK D+ + R+V +Q K + Y+E SA + N EK
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENI 83
K+ WDTAG E+F L ++ ++ FD+T++ ++ NV W L CEN
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 84 PIVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 128
IVL GNK D+ R+V +Q K + Y+E SA + N EK
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 62 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 121
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 122 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 63 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 122
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 123 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 61 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 121 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 61 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 121 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 8 KATIGVEVHPLDFFTNCGKI-RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY 66
KATIG + + + K+ WDTAGQE+F L +Y C ++++DVT ++
Sbjct: 38 KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSF 97
Query: 67 KNVPTWHRDLCRVCENI------PIVLCGNKVDV-KNRQVKAKQVTFHRKKNLQ---YYE 116
+N+ +W RD V N+ P V+ GNK+D +++++ +++ K+L +
Sbjct: 98 ENIKSW-RDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL 156
Query: 117 ISAKSNYNFEKPFLYLAR 134
SAK+ N + F +AR
Sbjct: 157 TSAKNAINVDTAFEEIAR 174
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R+
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREF 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
N+ D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NRCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV E++P+VL G
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ +R V KQ R + + E SAK+ + F L R++
Sbjct: 117 NKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 33 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
DTAG E+F +RD Y +GQ +++ +TA+ T+ ++ + RV +++P++L GN
Sbjct: 59 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 118
Query: 91 KVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
K D+++ +V K Q + N + E SAKS N + F L R++
Sbjct: 119 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 33 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
DTAG E+F +RD Y +GQ +++ +TA+ T+ ++ + RV +++P++L GN
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 116
Query: 91 KVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
K D+++ +V K Q + N + E SAKS N + F L R++
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV E++P+VL G
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ +R V KQ R + + E SAK+ + F L R++
Sbjct: 117 NKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV E++P+VL G
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ +R V KQ R + + E SAK+ + F L R++
Sbjct: 117 NKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIV 86
+F WDTAGQE+F L YY AII++D+T T+ + W R+L + +I +
Sbjct: 55 KFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 114
Query: 87 LCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
+ GNK D+ + R+V + + + + E SAK+ N + F+ ++R++
Sbjct: 115 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE+ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + +++++ + + RV E++P+VL G
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ +R V KQ R + + E SAK+ + F L R++
Sbjct: 117 NKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DT GQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DT GQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAG+E++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTA QE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
++ K+TIGVE KI+ WDTAG E++ + YY A+I++D++
Sbjct: 36 NIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKS 95
Query: 64 LTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAK 120
+Y+N W +L +N+ + L GNK D+ + R V + F + + + E SA
Sbjct: 96 SSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSAL 155
Query: 121 SNYNFEKPFLYL 132
++ N +K F L
Sbjct: 156 NSDNVDKAFREL 167
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTA QE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+T+G++ + N +I+ WDTAG E++ + YY I+ +D+T ++
Sbjct: 39 STVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNA 98
Query: 69 VPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
V W + +N ++L GNK D ++ +V + +Q+ H +++E SAK N
Sbjct: 99 VQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLADHL--GFEFFEASAKDNI 156
Query: 124 NFEKPFLYL 132
N ++ F L
Sbjct: 157 NVKQTFERL 165
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAG E++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---EN 82
+++ DTAG E + +RD Y+ G+ +++F +T ++ + + RV +
Sbjct: 54 EVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 113
Query: 83 IPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
IP+++ GNK D++ RQV ++ ++ +QY E SAK+ N +K F L R++
Sbjct: 114 IPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---EN 82
+++ DTAG E + +RD Y+ G+ +++F +T ++ + + RV +
Sbjct: 50 EVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 109
Query: 83 IPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
IP+++ GNK D++ RQV ++ ++ +QY E SAK+ N +K F L R++
Sbjct: 110 IPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAG E++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 61 LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 121 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIV 86
+F WDTAGQE+F L YY A+I++D+T + ++ + W ++L ENI +
Sbjct: 73 KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132
Query: 87 LCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
+ GNK D+ + R+V K + E SAK+ N E+ F ++R++
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAG E++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAG E++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAG E++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 31 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLC 88
DTAGQE+F +R+ Y G +I++ VT + ++++V +H+ + RV E+ P++L
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 89 GNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 134
NKVD+ + R+V Q K N+ Y E SAK N +K F L R
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAG E++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 31 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLC 88
DTAGQE+F +R+ Y G +I++ VT + ++++V +H+ + RV E+ P++L
Sbjct: 65 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 124
Query: 89 GNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 134
NKVD+ + R+V Q K N+ Y E SAK N +K F L R
Sbjct: 125 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 173
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 31 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLC 88
DTAGQE+F +R+ Y G +I++ VT + ++++V +H+ + RV E+ P++L
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 89 GNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 134
NKVD+ + R+V Q K N+ Y E SAK N +K F L R
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAG E++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V+++Q R + Y E SAK+ E F L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 31 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLC 88
DTAGQE+F +R+ Y G +I++ VT + ++++V +H+ + RV E+ P++L
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 89 GNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 134
NKVD+ + R+V Q K N+ Y E SAK N +K F L R
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+T+G++ + + +++ WDTAGQE++ + YY I+M+D+T ++
Sbjct: 54 STVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 113
Query: 69 VPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNF 125
V W + +N ++L GNK D++ +V K + ++E SAK N +
Sbjct: 114 VQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISV 173
Query: 126 EKPF 129
+ F
Sbjct: 174 RQAF 177
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAGQE++ +RD Y G+ + +F + ++ ++ + + RV +++P+VL G
Sbjct: 74 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133
Query: 90 NKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ R V KQ + + + E SAK+ E F L R++
Sbjct: 134 NKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+T+G++ + + +I+ WDTAGQE++ + YY ++M+D+ + ++
Sbjct: 53 STVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAA 112
Query: 69 VPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNF 125
V W + +N ++L GNK D+++ +V + +L +++E SAK N N
Sbjct: 113 VQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINV 172
Query: 126 EKPF 129
++ F
Sbjct: 173 KQVF 176
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
DTAG E++ +RD Y G+ + +F + +++++ + + RV E++P+VL G
Sbjct: 74 LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 133
Query: 90 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ +R V KQ R + + E SAK+ + F L R++
Sbjct: 134 NKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTY 66
+ATIGV+ + +I+ WDTAGQE+F + YY + + ++D+T ++
Sbjct: 50 EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASF 109
Query: 67 KNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAKQVT-FHRKKNLQYYEISAKS 121
++P W + C+ + +IP +L GNK D+++ QV F ++ +E SAK+
Sbjct: 110 HSLPAWIEE-CKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKN 168
Query: 122 ---NYNFEKPFLYLARKL 136
N + E F+ LA KL
Sbjct: 169 PNDNDHVEAIFMTLAHKL 186
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENI 83
+I WDTAG E+F L ++ +++FD+T ++ NV W L EN
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 84 PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
IVLCGNK D+++ R VK ++ K + Y+E SA + N
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTN 171
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIV 86
+F WDTAG E+F L YY AII++D+T T+ + W R+L + +I +
Sbjct: 56 KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 115
Query: 87 LCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
+ GNK D+ + R+V + + + + E SAK+ N + F+ ++R++
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
+TIGV+ + I+ WDTAGQE+F + YY I+++DVT + ++ N
Sbjct: 29 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 88
Query: 69 VPTWHRDLCR-VCENIPIVLCGNKVDV 94
V W +++ R EN+ +L GNK D+
Sbjct: 89 VKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIP 84
++ WDTAGQE + LR Y +I F + + +NV W ++ C+ +P
Sbjct: 57 RVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVP 116
Query: 85 IVLCGNKVDVKN--------RQVKAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPF 129
I+L G KVD++N RQ + VT +++ YYE SAK+ Y + F
Sbjct: 117 IILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
Query: 130 LYLAR 134
R
Sbjct: 177 EAATR 181
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
Query: 8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTY 66
+ATIGV+ + +I+ WDTAGQE+F + YY + + ++D T ++
Sbjct: 59 EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASF 118
Query: 67 KNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAKQVT-FHRKKNLQYYEISAKS 121
++P W + C+ + +IP +L GNK D+++ QV F + +E SAK+
Sbjct: 119 HSLPAWIEE-CKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKN 177
Query: 122 ---NYNFEKPFLYLARKL 136
N + E F LA KL
Sbjct: 178 PNDNDHVEAIFXTLAHKL 195
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 16/119 (13%)
Query: 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
+ + WDTAGQ+ + LR +Y ++ FDVT+ ++ N+ W+ ++ C+ +PI
Sbjct: 82 VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPI 141
Query: 86 VLCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 129
++ G K D++ R+ + VT+HR + + Y E SA+ + N F
Sbjct: 142 IVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 45 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 165 DGVREVFEMATR 176
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 49 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 108
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 109 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 168
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 169 DGVREVFEMATR 180
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 43 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 102
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 103 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 162
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 163 DGVREVFEMATR 174
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 43 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 102
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 103 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 162
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 163 DGVREVFEMATR 174
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 46 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 105
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 106 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 165
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 166 DGVREVFEMATR 177
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
D + ++ WDTAGQE + R Y ++ F + + + +N+P W ++
Sbjct: 45 DIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + A+++ +++ ++ Y E SAK+
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTK 164
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 165 DGVREVFEMATR 176
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 47 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 106
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 107 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 167 DGVREVFEMATR 178
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 46 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 105
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 106 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 165
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 166 DGVREVFEMATR 177
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 47 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 106
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 107 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 167 DGVREVFEMATR 178
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 45 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 165 DGVREVFEMATR 176
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 45 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 165 DGVREVFEMATR 176
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 45 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 165 DGVREVFEMATR 176
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 47 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 106
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 107 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 167 DGVREVFEMATR 178
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 48 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 107
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 108 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 168 DGVREVFEMATR 179
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y ++ F + ++ +Y+NV W +L R N+PIVL G
Sbjct: 62 WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGT 121
Query: 91 KVDVKNRQ---------VKAKQVTFHRKK--NLQYYEISAKSNYNFEKPF 129
K+D+++ + + + Q RK+ Y E S+K+ N + F
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 65 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 124
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++ + +++ +++ ++ Y E SAK+
Sbjct: 125 HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 184
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 185 EGVREVFEMATR 196
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
D + ++ WDTAG E + LR Y ++ F + + + +N+P W ++
Sbjct: 48 DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 107
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++N + +++ +++ ++ Y E SAK+
Sbjct: 108 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 168 DGVREVFEMATR 179
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 45 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
C N+PI+L GNK D++ + +++ +++ ++ Y E SAK+
Sbjct: 105 HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 164
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 165 EGVREVFEMATR 176
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 33 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
DTAG E+F +RD Y +GQ I+++ + + +++++ + RV E +P++L GN
Sbjct: 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116
Query: 91 KVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
KVD+++ + + + + E SAKS ++ F + R++
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81
N + WDTAGQE + LR Y I+ F + ++ +Y+NV W +L
Sbjct: 52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP 111
Query: 82 NIPIVLCGNKVDVKNRQ---------VKAKQVTFHRKKNL----QYYEISAKSNYNFEKP 128
+PIVL G K+D+++ + V V K L Y E S+KS N +
Sbjct: 112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGV 171
Query: 129 F 129
F
Sbjct: 172 F 172
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y ++I F + + +++NV W+ ++ C N PI+L G
Sbjct: 58 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 117
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 118 KLDLRDDKDTIEKLKEKKLT 137
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y ++I F + + +++NV W+ ++ C N PI+L G
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y ++I F + + +++NV W+ ++ C N PI+L G
Sbjct: 60 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 119
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 120 KLDLRDDKDTIEKLKEKKLT 139
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y ++I F + + +++NV W+ ++ C N PI+L G
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
+ WDTAGQE + LR Y ++ F + ++ +Y+N+ W +L IPI
Sbjct: 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPI 113
Query: 86 VLCGNKVDVKNRQV------KAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 129
VL G K+D+++ + A +T + + L +Y E S+K+ N + F
Sbjct: 114 VLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
D + ++ WDTAGQE + LR Y ++ F V + + +N+P W ++
Sbjct: 65 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK 124
Query: 78 RVCENIPIVLCGNKVDVKN 96
C N+PI+L NK D+++
Sbjct: 125 HFCPNVPIILVANKKDLRS 143
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPI 85
+ WDTAGQE + LR Y I+ F + ++ +Y+NV W +L +PI
Sbjct: 54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 113
Query: 86 VLCGNKVDVKNRQV------KAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPF 129
+L G K+D+++ + A +T ++ + L+ Y E S+K+ N + F
Sbjct: 114 ILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y +I F + + +++NV W+ ++ C N PI+L G
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y +I F + + +++NV W+ ++ C N PI+L G
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y +I F + + +++NV W+ ++ C N PI+L G
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y +I F + + +++NV W+ ++ C N PI+L G
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y +I F + + +++NV W+ ++ C N PI+L G
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y +I F + + +++NV W+ ++ C N PI+L G
Sbjct: 75 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 134
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 135 KLDLRDDKDTIEKLKEKKLT 154
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
+ WDTAGQE + LR Y +I F + + +++NV W+ ++ C N PI
Sbjct: 58 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI 117
Query: 86 VLCGNKVDVKN-----RQVKAKQVT 105
+L G K+D+++ ++K K++T
Sbjct: 118 ILVGTKLDLRDDKDTIEKLKEKKLT 142
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y +I F + + +++NV W+ ++ C N PI+L G
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y +I F + + +++NV W+ ++ C N PI+L G
Sbjct: 66 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 125
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 126 KLDLRDDKDTIEKLKEKKLT 145
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
+ WDTAGQE + LR Y +I F + + +++NV W+ ++ C N PI
Sbjct: 78 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI 137
Query: 86 VLCGNKVDVKN-----RQVKAKQVT 105
+L G K+D+++ ++K K++T
Sbjct: 138 ILVGTKLDLRDDKDTIEKLKEKKLT 162
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
+ WDTAGQE + LR Y +I F + + +++NV W+ ++ C N PI
Sbjct: 78 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI 137
Query: 86 VLCGNKVDVKN-----RQVKAKQVT 105
+L G K+D+++ ++K K++T
Sbjct: 138 ILVGTKLDLRDDKDTIEKLKEKKLT 162
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 33 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCG 89
DT G +F ++ G I+++ +T+R + + + + +C + E+IPI+L G
Sbjct: 57 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 116
Query: 90 NKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 132
NK D +R+V++ + R + E SAK N+N ++ F L
Sbjct: 117 NKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
D + ++ WDTAGQE + LR Y ++ F + + + +N+P W ++
Sbjct: 65 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 124
Query: 78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
N+PI+L GNK D++ + +++ +++ ++ Y E SAK+
Sbjct: 125 HFXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 184
Query: 123 YNFEKPFLYLAR 134
+ F R
Sbjct: 185 EGVREVFEMATR 196
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 33 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCG 89
DT G +F ++ G I++F VT++ + + + ++ + ++ E+IP++L G
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121
Query: 90 NKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 132
NK D R+V ++ ++ + E SAK NYN ++ F L
Sbjct: 122 NKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQEL 165
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y +I F + + +Y+NV W ++ C + PI+L G
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGT 115
Query: 91 KVDVKN 96
K+D+++
Sbjct: 116 KLDLRD 121
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 8 KATIGVEVHPLDFF----TNCGK--IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 61
K TIG LDFF T G + WD GQ G + D Y Q ++++D+T
Sbjct: 36 KQTIG-----LDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDIT 90
Query: 62 ARLTYKNVPTWHRDLCRVCENI---PIV-LCGNKVDVKN-RQVK-AKQVTFHRKKNLQYY 115
+++N+ W+ + +V E P+V L GNK+D+++ R +K K + F ++ +
Sbjct: 91 NYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSH 150
Query: 116 EISAKSNYNFEKPFLYLARKLAG 138
+SAK+ + F +A ++ G
Sbjct: 151 FVSAKTGDSVFLCFQKVAAEILG 173
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
+ WDTAGQE + LR Y +I F + + +Y+NV W ++ C + PI
Sbjct: 58 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI 117
Query: 86 VLCGNKVDVKN 96
+L G K+D+++
Sbjct: 118 ILVGTKLDLRD 128
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y +I F + + +Y+NV W ++ C + PI+L G
Sbjct: 62 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGT 121
Query: 91 KVDVKN 96
K+D+++
Sbjct: 122 KLDLRD 127
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y +I F + + +++NV W+ ++ C + PI+L G
Sbjct: 57 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGT 116
Query: 91 KVDVKN--------RQVKAKQVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARK 135
K+D+++ R K +T+ + +++Y E SA + + F R
Sbjct: 117 KLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRA 176
Query: 136 LAG 138
+ G
Sbjct: 177 VLG 179
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAG E + LR Y +I F + + +++NV W+ ++ C N PI+L G
Sbjct: 56 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y +I F + + +++NV W+ ++ C + PI+L G
Sbjct: 57 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGT 116
Query: 91 KVDVKN--------RQVKAKQVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARK 135
K+D+++ R K +T+ + +++Y E SA + + F R
Sbjct: 117 KLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRA 176
Query: 136 LAG 138
+ G
Sbjct: 177 VLG 179
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAG E + LR Y +I F + + +++NV W+ ++ C N PI+L G
Sbjct: 59 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 118
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 119 KLDLRDDKDTIEKLKEKKLT 138
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAG E + LR Y +I F + + +++NV W+ ++ C N PI+L G
Sbjct: 56 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAG E + LR Y +I F + + +++NV W+ ++ C N PI+L G
Sbjct: 83 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 142
Query: 91 KVDVKN-----RQVKAKQVT 105
K+D+++ ++K K++T
Sbjct: 143 KLDLRDDKDTIEKLKEKKLT 162
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
WDTAGQE + LR Y +I F + + +++NV W+ ++ C + PI+L G
Sbjct: 56 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGT 115
Query: 91 KVDVKN 96
K+D+++
Sbjct: 116 KLDLRD 121
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 29 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVL 87
+ WDTAGQE++ LR Y ++ F V R ++ N+ T W ++ + VL
Sbjct: 73 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 132
Query: 88 CGNKVDVK 95
G KVD++
Sbjct: 133 VGLKVDLR 140
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 29 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVL 87
+ WDTAGQE++ LR Y ++ F V R ++ N+ T W ++ + VL
Sbjct: 72 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 131
Query: 88 CGNKVDVK 95
G KVD++
Sbjct: 132 VGLKVDLR 139
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
+ WDTAG E + LR Y +I F + + ++ +V W+ ++ C N PI
Sbjct: 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI 262
Query: 86 VLCGNKVDVKN-----RQVKAKQVT 105
+L G K+D+++ ++K K++T
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLT 287
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
+ WDTAG E + LR Y +I F + + ++ +V W+ ++ C N PI
Sbjct: 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI 262
Query: 86 VLCGNKVDVKN-----RQVKAKQVT 105
+L G K+D+++ ++K K++T
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLT 287
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
+ WDTAG E + LR Y +I F + + ++ +V W+ ++ C N PI
Sbjct: 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI 262
Query: 86 VLCGNKVDVKN-----RQVKAKQVT 105
+L G K+D+++ ++K K++T
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLT 287
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 14 EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTW 72
E + F + +I WDT+G + +R Y +I FD++ T +V W
Sbjct: 63 ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 122
Query: 73 HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 114
++ C N ++L G K D++ +++ HR+ + Y
Sbjct: 123 KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSY 164
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 14 EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTW 72
E + F + +I WDT+G + +R Y +I FD++ T +V W
Sbjct: 58 ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 117
Query: 73 HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 114
++ C N ++L G K D++ +++ HR+ + Y
Sbjct: 118 KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSY 159
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 14 EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTW 72
E + F + +I WDT+G + +R Y +I FD++ T +V W
Sbjct: 42 ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 101
Query: 73 HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 114
++ C N ++L G K D++ +++ HR+ + Y
Sbjct: 102 KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSY 143
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 31 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLC 88
W+ G+ ++ L D G +I++ +T R +++ L R E+IPI+L
Sbjct: 63 MWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120
Query: 89 GNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
GNK D V+ R+V +A V F + ++ E SA +N ++ F + R++
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 31 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLC 88
W+ G+ ++ L D G +I++ +T R +++ L R E+IPI+L
Sbjct: 63 MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120
Query: 89 GNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
GNK D V+ R+V +A V F K + E SA +N ++ F + R++
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXK----FIETSAAVQHNVKELFEGIVRQV 170
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 66 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 125
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 126 QIDLRDDPSTIEKLAKNKQKPI 147
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 59 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 118
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 119 QIDLRDDPSTIEKLAKNKQKPI 140
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 63 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 122
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPI 144
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 63 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 122
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPI 144
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPI 85
+R DTAGQ++F LR Y + ++ F V + +++NV W ++ C PI
Sbjct: 68 VRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPI 127
Query: 86 VLCGNKVDV-------------KNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
+L G + D+ K + V +A ++ K Y E SA + N ++ F
Sbjct: 128 ILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 58 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 117
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 118 QIDLRDDPSTIEKLAKNKQKPI 139
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 57 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 116
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 117 QIDLRDDPSTIEKLAKNKQKPI 138
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 59 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 118
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 119 QIDLRDDPSTIEKLAKNKQKPI 140
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 60 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 119
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 120 QIDLRDDPSTIEKLAKNKQKPI 141
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91 KVDVKNRQVKAKQVTFHRKK 110
++D+++ +++ +++K
Sbjct: 116 QIDLRDDPSTIEKLAKNKQK 135
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 58 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 117
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 118 QIDLRDDPSTIEKLAKNKQKPI 139
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 26 KIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCEN 82
++ +D Q GG LRD G +I+F VT R ++ VP L R +
Sbjct: 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD 130
Query: 83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 136
+P++L GNK D+ ++++V+ ++L ++ E SA ++N + F R++
Sbjct: 131 LPVILVGNKSDL----ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 33 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNK 91
DTAGQE + LR Y ++ F V + +++NV W ++ C P +L G +
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
Query: 92 VDVKNRQVKAKQVTFHRKKNL 112
+D+++ +++ +++K +
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPI 137
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAGQE + LR Y +I F V +++NV W +L N+P +L G
Sbjct: 71 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGT 130
Query: 91 KVDVKN 96
++D+++
Sbjct: 131 QIDLRD 136
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAG E + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 56 FDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCG 89
W+ G+ ++ L D G +I++ +T R +++ L R E+IPI+L G
Sbjct: 95 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152
Query: 90 NKVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLYLARKL 136
NK D+ V+ ++V+ + + ++ E SA +N ++ F + R++
Sbjct: 153 NKSDL----VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCG 89
W+ G+ ++ L D G +I++ +T R +++ L R E+IPI+L G
Sbjct: 64 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121
Query: 90 NKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
NK D V+ R+V +A V F + ++ E SA +N ++ F + R++
Sbjct: 122 NKSDLVRCREVSVSEGRACAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 26 KIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCEN 82
++ +D Q GG L+D G +I+F VT R ++ VP L R +
Sbjct: 60 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD 119
Query: 83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 136
+P++L GNK D+ ++++V+ ++L ++ E SA ++N + F R++
Sbjct: 120 LPVILVGNKSDL----ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 33 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGN 90
DTAGQ+++ Y I I+++ VT+ +++ + H L + IPI+L GN
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 91 KVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSN 122
K D+ +V +++ K N + E SAK N
Sbjct: 120 KKDLHMERV----ISYEEGKALAESWNAAFLESSAKEN 153
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 26 KIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCEN 82
++ +D Q GG L+D G +I+F VT R ++ VP L R +
Sbjct: 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD 109
Query: 83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 136
+P++L GNK D+ ++++V+ ++L ++ E SA ++N + F R++
Sbjct: 110 LPVILVGNKSDL----ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 33 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGN 90
DTAGQ+++ Y I I+++ VT+ +++ + H L + IPI+L GN
Sbjct: 55 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 114
Query: 91 KVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSN 122
K D+ +V +++ K N + E SAK N
Sbjct: 115 KKDLHMERV----ISYEEGKALAESWNAAFLESSAKEN 148
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 32 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
+DTAG E + LR Y ++ F V + +++NV W ++ C P +L G
Sbjct: 60 FDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 119
Query: 91 KVDVKNRQVKAKQVTFHRKKNL 112
++D+++ +++ +++K +
Sbjct: 120 QIDLRDDPSTIEKLAKNKQKPI 141
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 25/104 (24%)
Query: 27 IRFYCWDTAGQEKFGGLRDGYYIH-------------------GQCAIIMFDVTARLTYK 67
+ WDTAGQE + LR Y +I F + + +++
Sbjct: 53 VNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFE 112
Query: 68 NV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 105
NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 113 NVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 156
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 33 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGN 90
DTAGQ+++ Y I I+++ VT+ +++ + H L + IPI+L GN
Sbjct: 58 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 117
Query: 91 KVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSN 122
K D+ +V +++ K N + E SAK N
Sbjct: 118 KKDLHMERV----ISYEEGKALAESWNAAFLESSAKEN 151
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 33 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGN 90
DTAGQ+++ Y I I+++ VT+ +++ + H L + IPI+L GN
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 91 KVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSN 122
K D+ +V +++ K N + E SAK N
Sbjct: 120 KKDLHMERV----ISYEEGKALAESWNAAFLESSAKEN 153
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 33 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR--DLCRVCENIPIVLCGN 90
DTAGQE R+G+ G+ ++++D+T R +++ V D + +N+ ++L GN
Sbjct: 82 DTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGN 140
Query: 91 KVDVKNRQVKAKQVTFHRKKNL------QYYEISA-KSNYNFEKPFLYLARKL 136
K D+ + ++QV+ + L +YE SA N + F L R++
Sbjct: 141 KADLDH----SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 51 GQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV-----KAK 102
G +I++ VT + +++ L R +++PI+L GNK D V++R+V +A
Sbjct: 78 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 137
Query: 103 QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
V F + ++ E SA ++N + F + R++
Sbjct: 138 AVVF----DCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 51 GQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV-----KAK 102
G +I++ VT + +++ L R +++PI+L GNK D V++R+V +A
Sbjct: 78 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 137
Query: 103 QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
V F + ++ E SA ++N + F + R++
Sbjct: 138 AVVF----DCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 10 TIGVEV--HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
T GVEV P+ + + DTAG + + Y+ AI++FDV++ +++
Sbjct: 54 TSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFE 113
Query: 68 NVPTWHRDL--CRVCENIPI--VLCGNKVDV--KNRQVKAKQVT-FHRKKNLQYYEISAK 120
+ W L R P+ VL NK D+ + QV+ + L ++++SA
Sbjct: 114 SCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSAN 173
Query: 121 -SNYNFEKPFLYLA 133
+ + PFL +A
Sbjct: 174 PPGKDADAPFLSIA 187
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 51 GQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV-----KAK 102
G +I++ VT + +++ L R +++PI+L GNK D V++R+V +A
Sbjct: 73 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 132
Query: 103 QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
V F + ++ E SA ++N + F + R++
Sbjct: 133 AVVF----DCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIP 84
++ WDT+G + +R Y ++ FD++ T + + W ++ C +
Sbjct: 58 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR 117
Query: 85 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 114
++L G K D++ +++ ++ + Y
Sbjct: 118 VLLIGCKTDLRTDLSTLMELSHQKQAPISY 147
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIP 84
++ WDT+G + +R Y ++ FD++ T + + W ++ C +
Sbjct: 74 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR 133
Query: 85 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 114
++L G K D++ +++ ++ + Y
Sbjct: 134 VLLIGCKTDLRTDLSTLMELSHQKQAPISY 163
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIP 84
++ WDT+G + +R Y ++ FD++ T + + W ++ C +
Sbjct: 57 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR 116
Query: 85 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 114
++L G K D++ +++ ++ + Y
Sbjct: 117 VLLIGCKTDLRTDLSTLMELSHQKQAPISY 146
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 21 FTNCGKIRFYCW--DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-- 76
GK F+ DTAGQ+++ L + I ++++ VT+ +++ + + ++ L
Sbjct: 64 IVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHE 123
Query: 77 CRVCENIPIVLCGNKVDVK-NRQVKA 101
+P+VL GNK D+ R+V+A
Sbjct: 124 GHGKTRVPVVLVGNKADLSPEREVQA 149
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 24/108 (22%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL----- 64
TIG + + F +D +GQ ++ L + YY GQ I + D + RL
Sbjct: 54 TIGFSIEKF----KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVA 109
Query: 65 -----TYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--RQVKAKQV 104
T N P HR IPI+ NK+D+++ VK Q+
Sbjct: 110 KEELDTLLNHPDIKHR-------RIPILFFANKMDLRDAVTSVKVSQL 150
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 1 MNVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD- 59
MN V TIG V + RF WD GQE + YY + + I++ D
Sbjct: 38 MNEVVHTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS 93
Query: 60 -------VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95
VT YK + H DL + +++ NK DVK
Sbjct: 94 TDRERISVTREELYKMLA--HEDLRKA----GLLIFANKQDVK 130
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 1 MNVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD- 59
MN V TIG V + RF WD GQE + YY + + I++ D
Sbjct: 38 MNEVVHTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS 93
Query: 60 -------VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95
VT YK + H DL + +++ NK DVK
Sbjct: 94 TDRERISVTREELYKMLA--HEDLRKA----GLLIFANKQDVK 130
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 1 MNVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD- 59
MN V TIG V + RF WD GQE + YY + + I++ D
Sbjct: 44 MNEVVHTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS 99
Query: 60 -------VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95
VT YK + H DL + +++ NK DVK
Sbjct: 100 TDRERISVTREELYKMLA--HEDLRKA----GLLIFANKQDVK 136
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 1 MNVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD- 59
MN V TIG V + RF WD GQE + YY + + I++ D
Sbjct: 43 MNEVVHTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS 98
Query: 60 -------VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 95
VT YK + H DL + +++ NK DVK
Sbjct: 99 TDRERISVTREELYKMLA--HEDLRKA----GLLIFANKQDVK 135
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+G V + G++ F +D G +KF GL + YY + I + D + L
Sbjct: 49 ATVGYNVETFE----KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCV 104
Query: 69 VPTW------HRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV 104
V + H D+ R +P + NK+D + A+ V
Sbjct: 105 VKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELV 149
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIG V +++ C F WD GQ++ L Y+ + Q I + D R + V
Sbjct: 48 TIGFNVETVEYKNIC----FTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEV 103
Query: 70 PTWHRDLCRVCE--NIPIVLCGNKVDVKN 96
+ + V E + ++L NK D+ N
Sbjct: 104 ADELQKMLLVDELRDAVLLLFANKQDLPN 132
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 51 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ---- 103
G +I++ + R ++++ L R +++PI+L GNK D+ R+V ++
Sbjct: 78 GSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRAC 137
Query: 104 -VTFHRKKNLQYYEISAKSNYNFEKPF 129
V F + ++ E SA +N + F
Sbjct: 138 AVVF----DCKFIETSATLQHNVAELF 160
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCEN 82
G + WD GQ +F + + Y + M D R + +L +
Sbjct: 65 GNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQG 124
Query: 83 IPIVLCGNKVDVKN-----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 132
IP+++ GNK D+ N + ++ ++ + + + Y IS K N + +L
Sbjct: 125 IPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
TIG V +++ I F WD GQ+K L YY + Q I + D R
Sbjct: 48 TIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDR 97
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIG V ++F I F WD GQ+K L YY + I + D R + +
Sbjct: 48 TIGFNVETVEF----RNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDR---ERI 100
Query: 70 PTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKAKQVT 105
+L R+ ++ I++ NK D+ N + A +VT
Sbjct: 101 DDAREELHRMINEEELKDAIILVFANKQDLPN-AMSAAEVT 140
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+ HP G I+F +D G + L Y+ + + D +
Sbjct: 27 ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDE 86
Query: 69 VPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAK 102
L + E ++P V+ GNK+D N +A+
Sbjct: 87 ARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 122
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
AT+ HP G I+F +D G + L Y+ + + D +
Sbjct: 49 ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDE 108
Query: 69 VPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAK 102
L + E ++P V+ GNK+D N +A+
Sbjct: 109 ARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 144
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIG V +++ I F WD GQ+K L Y+ + Q I + D R + V
Sbjct: 31 TIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERV 83
Query: 70 PTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKAKQVT----FHRKKNLQYY 115
+L R+ + +++ NK D+ N + A ++T H ++ +Y
Sbjct: 84 NEAREELMRMLAEDELRDAVLLVFANKQDLPN-AMNAAEITDKLGLHSLRHRNWY 137
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIG V +++ I F WD GQ+K L Y+ + Q I + D R + V
Sbjct: 47 TIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERV 99
Query: 70 PTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKAKQVT 105
+L R+ + +++ NK D+ N + A ++T
Sbjct: 100 NEAREELMRMLAEDELRDAVLLVFANKQDLPN-AMNAAEIT 139
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIG V +++ I F WD GQ+K L Y+ + Q I + D R + V
Sbjct: 48 TIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERV 100
Query: 70 PTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKAKQVT 105
+L R+ + +++ NK D+ N + A ++T
Sbjct: 101 NEAREELMRMLAEDELRDAVLLVFANKQDLPN-AMNAAEIT 140
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 84 PIVLCGNKVDVK-NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
PIV+ K D R ++ KKNLQ E SA+SN N + F L +
Sbjct: 200 PIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
TIG V +++ I F WD GQ+K L Y+ + Q I + D R + V
Sbjct: 196 TIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERV 248
Query: 70 PTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYY 115
+L R+ + +++ NK D+ N A+ ++ H ++ +Y
Sbjct: 249 NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWY 302
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 1 MNVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 60
+ SV T+G V + + ++F WD GQ+K L YY Q I + D
Sbjct: 344 LGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDC 399
Query: 61 TAR 63
R
Sbjct: 400 ADR 402
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
TIG V + + I F WD GQ++ L YY + + I + D R
Sbjct: 48 TIGFNVETVQY----KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDR 97
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
TIG V +++ C F WD GQ+K L Y+ + Q I + D R
Sbjct: 60 TIGFNVETVEYKNIC----FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 109
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
TIG V + + I F WD GQ++ L YY + + I + D R
Sbjct: 31 TIGFNVETVQY----KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 80
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 1 MNVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 60
+ SV T+G V + + ++F WD GQ+K L YY Q I + D
Sbjct: 22 LGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDC 77
Query: 61 TAR 63
R
Sbjct: 78 ADR 80
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
TIG V + + I F WD GQ++ L YY + + I + D R
Sbjct: 48 TIGFNVETVQY----KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 97
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
T+G V + + ++F WD GQ+K L YY Q I + D R
Sbjct: 31 TVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR 80
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
TIG V +++ I F WD GQ+K L Y+ + Q I + D R
Sbjct: 51 TIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 100
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+,
And Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
T+G V + + ++F WD GQ+K L YY Q I + D R
Sbjct: 44 TVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR 93
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
T+G V + + ++F WD GQ+K L YY Q I + D R
Sbjct: 43 TVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR 92
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
T+G V + + ++F WD GQ+K L YY Q I + D R
Sbjct: 31 TVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR 80
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Query: 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII-MFDVTARLTYKNVPTWHRDLCR--VCE 81
G + WD GQ +F + + Y G AI+ M D + + +L +
Sbjct: 74 GNVTIKLWDIGGQPRFRSMWE-RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 132
Query: 82 NIPIVLCGNKVDV-----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
IP+++ GNK D+ + ++ ++ + + + Y IS K N + +L +
Sbjct: 133 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII-MFDVTARLTYKNVPTWHRDLCR--VCE 81
G + WD GQ +F + + Y G AI+ M D + + +L +
Sbjct: 65 GNVTIKLWDIGGQPRFRSMWE-RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 123
Query: 82 NIPIVLCGNKVDV-----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 132
IP+++ GNK D+ + ++ ++ + + + Y IS K N + +L
Sbjct: 124 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
TIG V + + C I F WD GQ++ L YY + + I + D R
Sbjct: 48 TIGFNVECVQY---C-NISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDR 97
>pdb|2Z07|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z07|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
Length = 420
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 19/82 (23%)
Query: 68 NVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 126
N P W + L RV EN+P + DVK+ + E K +Y+
Sbjct: 166 NSPAWDKPLSRVPVENLPPY---ERRDVKHVNPE---------------ERPRKEDYDRY 207
Query: 127 KPFLYLARKLAGDPNLHFVESP 148
LYL R+L DP + +SP
Sbjct: 208 LSLLYLFRRLEYDPREIYRQSP 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,528,072
Number of Sequences: 62578
Number of extensions: 209960
Number of successful extensions: 936
Number of sequences better than 100.0: 322
Number of HSP's better than 100.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 322
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)