Query 029855
Match_columns 186
No_of_seqs 110 out of 516
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:43:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00101 14_3_3 14-3-3 homol 100.0 4E-69 8.8E-74 453.6 18.1 180 6-186 1-192 (244)
2 COG5040 BMH1 14-3-3 family pro 100.0 8.4E-70 1.8E-74 440.3 13.1 182 1-186 1-194 (268)
3 PF00244 14-3-3: 14-3-3 protei 100.0 2.2E-65 4.8E-70 429.6 16.4 178 6-186 1-190 (236)
4 KOG0841 Multifunctional chaper 100.0 2.5E-60 5.5E-65 393.9 14.2 179 5-186 1-192 (247)
5 PF13174 TPR_6: Tetratricopept 72.3 10 0.00022 20.6 4.0 28 8-35 2-29 (33)
6 TIGR00990 3a0801s09 mitochondr 69.6 73 0.0016 29.9 11.3 36 150-185 483-528 (615)
7 PF07719 TPR_2: Tetratricopept 67.3 17 0.00038 19.8 4.3 28 8-35 3-30 (34)
8 PF01765 RRF: Ribosome recycli 66.5 20 0.00044 28.3 6.0 72 40-112 85-156 (165)
9 PF13181 TPR_8: Tetratricopept 64.7 18 0.0004 19.8 4.0 28 8-35 3-30 (34)
10 PF04781 DUF627: Protein of un 60.8 13 0.00029 28.0 3.6 45 121-165 30-75 (111)
11 PF13432 TPR_16: Tetratricopep 59.0 26 0.00056 22.2 4.5 41 11-55 2-42 (65)
12 KOG4759 Ribosome recycling fac 58.6 41 0.00089 29.1 6.7 71 40-113 183-253 (263)
13 COG0233 Frr Ribosome recycling 58.0 35 0.00076 28.1 5.9 74 39-113 104-177 (187)
14 PF05010 TACC: Transforming ac 57.8 70 0.0015 26.6 7.8 82 11-109 123-205 (207)
15 PF13431 TPR_17: Tetratricopep 57.3 6.3 0.00014 22.8 1.1 30 156-186 1-34 (34)
16 PF13176 TPR_7: Tetratricopept 55.2 25 0.00054 20.2 3.6 25 9-33 2-26 (36)
17 cd00520 RRF Ribosome recycling 52.5 40 0.00086 27.2 5.4 73 40-113 99-171 (179)
18 TIGR00496 frr ribosome recycli 51.4 49 0.0011 26.7 5.8 73 40-113 94-166 (176)
19 PRK00083 frr ribosome recyclin 49.3 55 0.0012 26.6 5.8 73 40-113 103-175 (185)
20 PF13428 TPR_14: Tetratricopep 49.1 55 0.0012 19.4 5.3 28 8-35 3-30 (44)
21 PF00515 TPR_1: Tetratricopept 42.6 58 0.0013 17.8 4.0 27 9-35 4-30 (34)
22 cd05493 Bromo_ALL-1 Bromodomai 35.1 42 0.00092 26.0 2.9 35 96-130 75-116 (131)
23 TIGR02795 tol_pal_ybgF tol-pal 32.1 1.7E+02 0.0036 20.0 7.6 45 9-54 5-49 (119)
24 PF12895 Apc3: Anaphase-promot 31.7 86 0.0019 20.9 3.8 21 11-31 63-83 (84)
25 PF10083 DUF2321: Uncharacteri 31.7 2.7E+02 0.0059 22.3 7.7 33 24-59 83-115 (158)
26 cd02656 MIT MIT: domain contai 31.6 1.6E+02 0.0035 19.6 5.1 27 8-34 8-34 (75)
27 cd02683 MIT_1 MIT: domain cont 30.8 1.1E+02 0.0024 21.1 4.2 28 7-34 7-34 (77)
28 TIGR03504 FimV_Cterm FimV C-te 29.2 93 0.002 19.3 3.3 40 10-51 3-42 (44)
29 smart00028 TPR Tetratricopepti 28.8 78 0.0017 15.2 3.5 27 9-35 4-30 (34)
30 COG3063 PilF Tfp pilus assembl 28.7 35 0.00077 29.2 1.6 35 150-185 85-123 (250)
31 PF13414 TPR_11: TPR repeat; P 26.8 1.7E+02 0.0037 18.4 7.1 46 7-56 4-49 (69)
32 PF09324 DUF1981: Domain of un 26.6 2.3E+02 0.0049 19.8 5.8 36 41-76 29-68 (86)
33 PRK15179 Vi polysaccharide bio 25.8 5.9E+02 0.013 25.0 9.6 62 4-73 152-213 (694)
34 PHA02103 hypothetical protein 25.6 23 0.0005 26.8 -0.0 15 130-144 78-92 (135)
35 PF14559 TPR_19: Tetratricopep 25.1 1.8E+02 0.0039 18.1 4.3 53 18-75 3-55 (68)
36 PF14689 SPOB_a: Sensor_kinase 24.6 1.5E+02 0.0033 19.4 3.9 26 10-35 27-52 (62)
37 PF00901 Orbi_VP5: Orbivirus o 24.6 3.1E+02 0.0067 26.0 7.0 70 22-95 121-193 (508)
38 PF09969 DUF2203: Uncharacteri 24.4 3.1E+02 0.0068 20.6 7.7 66 42-107 3-68 (120)
39 PF13424 TPR_12: Tetratricopep 23.9 1.3E+02 0.0027 19.6 3.5 27 9-35 8-34 (78)
40 cd02682 MIT_AAA_Arch MIT: doma 23.7 1.5E+02 0.0032 20.7 3.8 27 8-34 8-34 (75)
41 smart00745 MIT Microtubule Int 23.1 1.5E+02 0.0033 19.7 3.8 27 8-34 10-36 (77)
42 cd02678 MIT_VPS4 MIT: domain c 22.4 1.6E+02 0.0035 19.9 3.8 28 7-34 7-34 (75)
43 CHL00033 ycf3 photosystem I as 22.0 3.2E+02 0.0069 20.7 5.9 29 7-35 36-64 (168)
44 PF13374 TPR_10: Tetratricopep 21.6 1.6E+02 0.0035 16.2 3.6 27 9-35 5-31 (42)
45 KOG0570 Transcriptional coacti 20.8 5E+02 0.011 21.8 6.9 52 46-112 110-166 (223)
No 1
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=4e-69 Score=453.65 Aligned_cols=180 Identities=65% Similarity=0.986 Sum_probs=171.6
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhHhhhhchhhhHHHHHHHHhhhhhcccchhhHH
Q 029855 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVS 85 (186)
Q Consensus 6 re~~~~~Aklaeq~ery~dm~~~mk~~~~~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~ 85 (186)
|++++|+|||++||||||||+++||+++++.+ +.+||.||||||||||||+||++|+|||+|+++|++++.+|++.+++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~-~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~ 79 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVD-SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVA 79 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-CccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHH
Confidence 68999999999999999999999999998522 25899999999999999999999999999999999988788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHhHHhhhhcccchhhhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 029855 86 LVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQVISN 165 (186)
Q Consensus 86 ~i~~yr~kie~EL~~~C~eii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (186)
.+++||++|++||..+|++||+|||++|||.+++++++|||+|||||||||+|||..|+++++++++|++||++|+++|+
T Consensus 80 ~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~ 159 (244)
T smart00101 80 SIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIAL 159 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcC------------chhhHHHHHcCChhhhcC
Q 029855 166 LDL------------LYNPFFFLRLNRIHQVIK 186 (186)
Q Consensus 166 ~~L------------N~SVF~yEi~~~~~~A~~ 186 (186)
.+| |||||||||||+|++||+
T Consensus 160 ~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~ 192 (244)
T smart00101 160 AELPPTHPIRLGLALNFSVFYYEILNSPDRACN 192 (244)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 765 999999999999999994
No 2
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-70 Score=440.30 Aligned_cols=182 Identities=59% Similarity=0.939 Sum_probs=175.7
Q ss_pred CCCCcHHhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhHhhhhchhhhHHHHHHHHhhhhhcccc
Q 029855 1 MGTPTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKN 80 (186)
Q Consensus 1 ~~~~~re~~~~~Aklaeq~ery~dm~~~mk~~~~~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqke~~~~~ 80 (186)
|+. .|++.+|+|||++||+||+||++-||.++.. +++||.+|||||||||||+||+||+|||++++++||++++||
T Consensus 1 Ms~-~rE~svylAkLaeqAERYe~MvenMk~vas~---~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~ 76 (268)
T COG5040 1 MST-SREDSVYLAKLAEQAERYEEMVENMKLVASS---GQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGN 76 (268)
T ss_pred CCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCC
Confidence 553 5999999999999999999999999999965 389999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHhHHhhhhcccchhhhhhccchhHHHHHHHHHHHHHHH
Q 029855 81 EEHVSLVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAA 160 (186)
Q Consensus 81 ~~~~~~i~~yr~kie~EL~~~C~eii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A 160 (186)
..++.+|++||++|++||..||+||+++|+++|||.+++.|++|||+|||||||||+|||..|+.+.++++.|+++|+.|
T Consensus 77 ~~qv~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~A 156 (268)
T COG5040 77 THQVELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAA 156 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC------------chhhHHHHHcCChhhhcC
Q 029855 161 QVISNLDL------------LYNPFFFLRLNRIHQVIK 186 (186)
Q Consensus 161 ~~~a~~~L------------N~SVF~yEi~~~~~~A~~ 186 (186)
.++|...| |||||||||+|+|++||.
T Consensus 157 seiA~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~ 194 (268)
T COG5040 157 SEIATTELPPTHPIRLGLALNFSVFYYEILNSPDKACH 194 (268)
T ss_pred HHHhhccCCCCCchhhhheecceeeeeecccCcHHHHH
Confidence 99999865 999999999999999993
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=2.2e-65 Score=429.57 Aligned_cols=178 Identities=60% Similarity=0.956 Sum_probs=168.6
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhHhhhhchhhhHHHHHHHHhhhhhcccchhhHH
Q 029855 6 REQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVS 85 (186)
Q Consensus 6 re~~~~~Aklaeq~ery~dm~~~mk~~~~~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~ 85 (186)
|++++|+|||++|||||+||+++||+++++ + ++||.|||||||+||||+||++|+|||+|++++++++.+|++..++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~-~--~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 77 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEM-N--PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK 77 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHT-S--S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHcc-C--CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH
Confidence 899999999999999999999999999987 3 9999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHhHHhhhhcccchhhhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 029855 86 LVKDYRSKVESELSDVCGSILKLLDSHLVPSATAGESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQVISN 165 (186)
Q Consensus 86 ~i~~yr~kie~EL~~~C~eii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 165 (186)
.+++||++|++||..+|++||++||++|+|.+++++++|||+|||||||||+|||..|+++.+++++|.++|++|+++|+
T Consensus 78 ~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 78 LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC------------chhhHHHHHcCChhhhcC
Q 029855 166 LDL------------LYNPFFFLRLNRIHQVIK 186 (186)
Q Consensus 166 ~~L------------N~SVF~yEi~~~~~~A~~ 186 (186)
.+| |||||||||+|++++||+
T Consensus 158 ~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ 190 (236)
T PF00244_consen 158 KELPPTHPLRLGLALNYSVFYYEILNDPEKAIE 190 (236)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHH
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 865 999999999999999984
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-60 Score=393.86 Aligned_cols=179 Identities=62% Similarity=0.951 Sum_probs=172.7
Q ss_pred cHHhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhHhhhhchhhhHHHHHHHHhhhhhcccchhhH
Q 029855 5 TREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHV 84 (186)
Q Consensus 5 ~re~~~~~Aklaeq~ery~dm~~~mk~~~~~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~ 84 (186)
+|+++|++|++++|||||+||+.+||.+++. + .+||.+|||||||||||+||++|+|||+|++|||+++++|++.++
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~-~--~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v 77 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAEL-D--VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKV 77 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhccc-c--hhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHH
Confidence 4899999999999999999999999999975 3 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-CchHhHHhhhhcccchhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 029855 85 SLVKDYRSKVESELSDVCGSILKLLDSHLVPSATA-GESKVFYLKMKGDYYRYLAEFKVGDERKAAAENTMLSYKAAQVI 163 (186)
Q Consensus 85 ~~i~~yr~kie~EL~~~C~eii~lid~~Lip~~~~-~eskvFy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 163 (186)
..+..||++|+.||..+|++|+.++|.+|+|+++. .+++|||+|||||||||+|||..|++|++++++++++|+.|+++
T Consensus 78 ~~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~i 157 (247)
T KOG0841|consen 78 KMIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEI 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 78899999999999999999999999999999999999999999
Q ss_pred HHhcC------------chhhHHHHHcCChhhhcC
Q 029855 164 SNLDL------------LYNPFFFLRLNRIHQVIK 186 (186)
Q Consensus 164 a~~~L------------N~SVF~yEi~~~~~~A~~ 186 (186)
|+..| |||||||||+|.|++||.
T Consensus 158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~ 192 (247)
T KOG0841|consen 158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERACS 192 (247)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHH
Confidence 99754 999999999999999994
No 5
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.29 E-value=10 Score=20.58 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029855 8 QYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (186)
Q Consensus 8 ~~~~~Aklaeq~ery~dm~~~mk~~~~~ 35 (186)
-+..+|.+..+.|+++++++.++.++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3577899999999999999999999965
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=69.60 E-value=73 Score=29.95 Aligned_cols=36 Identities=6% Similarity=0.024 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhc----------CchhhHHHHHcCChhhhc
Q 029855 150 AENTMLSYKAAQVISNLD----------LLYNPFFFLRLNRIHQVI 185 (186)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~----------LN~SVF~yEi~~~~~~A~ 185 (186)
.+.|...|++|+++.... +|.+..+|+-.++.++|.
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~ 528 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence 466777888888765321 033445566566666654
No 7
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=67.30 E-value=17 Score=19.77 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029855 8 QYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (186)
Q Consensus 8 ~~~~~Aklaeq~ery~dm~~~mk~~~~~ 35 (186)
-+..++.+..+.|+|++.++++++.+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999875
No 8
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=66.46 E-value=20 Score=28.30 Aligned_cols=72 Identities=21% Similarity=0.210 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHhhHhhhhchhhhHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029855 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSH 112 (186)
Q Consensus 40 ~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~ 112 (186)
|++|.|-|.-|...-|...-..|.+.|.+..--.+.- +........-++-..+++++|..+-++.+.-||..
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l-kk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~ 156 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKL-KKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDEL 156 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999998864222211 00000001334555667777877777777777754
No 9
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=64.69 E-value=18 Score=19.85 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029855 8 QYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (186)
Q Consensus 8 ~~~~~Aklaeq~ery~dm~~~mk~~~~~ 35 (186)
-+..++++..+.|.++.++.++++.++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567899999999999999999999875
No 10
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=60.80 E-value=13 Score=27.99 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=36.2
Q ss_pred chHhHHhhhhcccchhhhhhccchh-HHHHHHHHHHHHHHHHHHHH
Q 029855 121 ESKVFYLKMKGDYYRYLAEFKVGDE-RKAAAENTMLSYKAAQVISN 165 (186)
Q Consensus 121 eskvFy~KmkgDyyRYlaE~~~~~~-~~~~~~~a~~aY~~A~~~a~ 165 (186)
++..|-+...|+.|..+|...++.+ +......|.++|.+|..++-
T Consensus 30 ~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 30 ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 4344889999999999999877655 55667899999999988764
No 11
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=59.03 E-value=26 Score=22.21 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhHh
Q 029855 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYK 55 (186)
Q Consensus 11 ~~Aklaeq~ery~dm~~~mk~~~~~~~~~~~Lt~eERnLlsvayK 55 (186)
-+|...-+.|+|++++..+++++.. .+-+.+=+.++..++-
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~----~P~~~~a~~~lg~~~~ 42 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ----DPDNPEAWYLLGRILY 42 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC----STTHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHH
Confidence 4688888999999999999999965 3335555556665554
No 12
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=58.61 E-value=41 Score=29.06 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHhhHhhhhchhhhHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029855 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (186)
Q Consensus 40 ~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~L 113 (186)
|++|.|-|.-|+-.-+.+....|.|+|-+..=--+...+... ..-.+=-.+++.||..+..+.++.+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999886422222111101 02244556788888888888888888764
No 13
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=57.95 E-value=35 Score=28.05 Aligned_cols=74 Identities=24% Similarity=0.237 Sum_probs=49.5
Q ss_pred CCCCCHHHHHHHHhhHhhhhchhhhHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029855 39 ATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (186)
Q Consensus 39 ~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~L 113 (186)
-|+||.|-|-=|.---|...-.-|-|.|.+.--- +.+.+..+....+.++-.++.++++..+.++.+.-||..+
T Consensus 104 ~P~lTeErRkelvK~~k~~~EeakvaiRniRrda-~d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 104 LPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDA-NDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999998888888888888888874210 0000111111123456667788888888888888888654
No 14
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=57.82 E-value=70 Score=26.61 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhHhhhhchhhhHHHHHHH-HhhhhhcccchhhHHHHHH
Q 029855 11 YLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISS-IEQKEEGRKNEEHVSLVKD 89 (186)
Q Consensus 11 ~~Aklaeq~ery~dm~~~mk~~~~~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~-ieqke~~~~~~~~~~~i~~ 89 (186)
|+++|..+..||+-|-.....-+ +...+|-.-+-..++.-+...++.+|.-.. +..-++ . -.
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL-------~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~---------~-Le 185 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKL-------EKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEE---------S-LE 185 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---------H-HH
Confidence 67778888888876544433222 234556666666777777777777776421 110000 0 01
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029855 90 YRSKVESELSDVCGSILKLL 109 (186)
Q Consensus 90 yr~kie~EL~~~C~eii~li 109 (186)
-+.+=..||..||+|+|.=+
T Consensus 186 QK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 186 QKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 12233479999999988754
No 15
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=57.33 E-value=6.3 Score=22.81 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcC----chhhHHHHHcCChhhhcC
Q 029855 156 SYKAAQVISNLDL----LYNPFFFLRLNRIHQVIK 186 (186)
Q Consensus 156 aY~~A~~~a~~~L----N~SVF~yEi~~~~~~A~~ 186 (186)
+|++|+++-=.+- |++++|+ ..|+.++|.+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYL-NQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhcC
Confidence 3778887654332 8899777 5699999874
No 16
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=55.22 E-value=25 Score=20.18 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh
Q 029855 9 YVYLAKLAEQAERYEEMVKFMDSLV 33 (186)
Q Consensus 9 ~~~~Aklaeq~ery~dm~~~mk~~~ 33 (186)
+..+|.+..+.|.|+.++++.++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4578999999999999999999855
No 17
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=52.48 E-value=40 Score=27.20 Aligned_cols=73 Identities=25% Similarity=0.266 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHhhHhhhhchhhhHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029855 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (186)
Q Consensus 40 ~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~L 113 (186)
|+||.|-|.=|...-|...-.-|.+.|.+..--.+.- ++.......-++-.++.+++|..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999988888888888888888888742111100 000000001234455667777777777777777543
No 18
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=51.42 E-value=49 Score=26.68 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHhhHhhhhchhhhHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029855 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (186)
Q Consensus 40 ~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~L 113 (186)
|+||.|-|.=|.-.-|...-.-|.+.|.+..---+.- +.......+-++-.++++++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999988888888888888888888742100000 000000012244555677777777777777777654
No 19
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=49.33 E-value=55 Score=26.61 Aligned_cols=73 Identities=23% Similarity=0.244 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHhhHhhhhchhhhHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029855 40 TELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSHL 113 (186)
Q Consensus 40 ~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~L 113 (186)
|+||.|-|.=|...-|...-.-|.+.|.+..--.+.- ++....-.+-++-.++.++||..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKL-KKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999988888888888888888888752111100 000000012234455667777777777777776543
No 20
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=49.10 E-value=55 Score=19.41 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029855 8 QYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (186)
Q Consensus 8 ~~~~~Aklaeq~ery~dm~~~mk~~~~~ 35 (186)
-.+.+|+...+.|++++.....+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3577899999999999999999999975
No 21
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=42.59 E-value=58 Score=17.77 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029855 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (186)
Q Consensus 9 ~~~~Aklaeq~ery~dm~~~mk~~~~~ 35 (186)
+..++.+..+.|+|++.+.+.++.++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 456888999999999999999999975
No 22
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=35.07 E-value=42 Score=26.00 Aligned_cols=35 Identities=20% Similarity=0.435 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCC-----C--chHhHHhhhh
Q 029855 96 SELSDVCGSILKLLDSHLVPSATA-----G--ESKVFYLKMK 130 (186)
Q Consensus 96 ~EL~~~C~eii~lid~~Lip~~~~-----~--eskvFy~Kmk 130 (186)
+=+.++|.||+.+|...|.-.... . -.|-||+|.-
T Consensus 75 ~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~m 116 (131)
T cd05493 75 TSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLM 116 (131)
T ss_pred ehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHH
Confidence 347889999999998887433222 2 2577888764
No 23
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=32.06 E-value=1.7e+02 Score=19.96 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhH
Q 029855 9 YVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAY 54 (186)
Q Consensus 9 ~~~~Aklaeq~ery~dm~~~mk~~~~~~~~~~~Lt~eERnLlsvay 54 (186)
+.-.+....+.|+|+++++.+.+++... ++..++.+-+..++.+|
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 49 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAY 49 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 3444555555566666666666655432 12233344444444443
No 24
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=31.75 E-value=86 Score=20.95 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHH
Q 029855 11 YLAKLAEQAERYEEMVKFMDS 31 (186)
Q Consensus 11 ~~Aklaeq~ery~dm~~~mk~ 31 (186)
.+|+...+.|+|++.++.+.+
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhc
Confidence 346666666666666655543
No 25
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.68 E-value=2.7e+02 Score=22.29 Aligned_cols=33 Identities=12% Similarity=0.293 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHhhHhhhhc
Q 029855 24 EMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIG 59 (186)
Q Consensus 24 dm~~~mk~~~~~~~~~~~Lt~eERnLlsvayKn~i~ 59 (186)
..++..+++++.. .+||.+|++.|..+...++-
T Consensus 83 ~~L~aa~el~ee~---eeLs~deke~~~~sl~dL~~ 115 (158)
T PF10083_consen 83 NALEAANELIEED---EELSPDEKEQFKESLPDLTK 115 (158)
T ss_pred HHHHHHHHHHHHh---hcCCHHHHHHHHhhhHHHhh
Confidence 4566677777643 79999999999999888774
No 26
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=31.55 E-value=1.6e+02 Score=19.64 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029855 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (186)
Q Consensus 8 ~~~~~Aklaeq~ery~dm~~~mk~~~~ 34 (186)
.++-.|--++..|.|++.+.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455567778888999999999988875
No 27
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=30.82 E-value=1.1e+02 Score=21.12 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029855 7 EQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (186)
Q Consensus 7 e~~~~~Aklaeq~ery~dm~~~mk~~~~ 34 (186)
-+++..|--.+++|+|++++.+-.+.++
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567788888999999999888777664
No 28
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=29.24 E-value=93 Score=19.30 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q 029855 10 VYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLS 51 (186)
Q Consensus 10 ~~~Aklaeq~ery~dm~~~mk~~~~~~~~~~~Lt~eERnLls 51 (186)
+-+|+..-..|.++.+-+.+..++... +++...+=+.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~--~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG--DEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC--CHHHHHHHHHHHh
Confidence 568999999999999999999999642 2555566666664
No 29
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=28.82 E-value=78 Score=15.19 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029855 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (186)
Q Consensus 9 ~~~~Aklaeq~ery~dm~~~mk~~~~~ 35 (186)
+..+|.+..+.|+|++.+.+..+.+..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 456788888999999999999888754
No 30
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.73 E-value=35 Score=29.22 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhc---C-chhhHHHHHcCChhhhc
Q 029855 150 AENTMLSYKAAQVISNLD---L-LYNPFFFLRLNRIHQVI 185 (186)
Q Consensus 150 ~~~a~~aY~~A~~~a~~~---L-N~SVF~yEi~~~~~~A~ 185 (186)
.+.|.++|++|+.++-.+ | ||.-|++.-. .|++|.
T Consensus 85 ~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg-~~~eA~ 123 (250)
T COG3063 85 NDLADESYRKALSLAPNNGDVLNNYGAFLCAQG-RPEEAM 123 (250)
T ss_pred hhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC-ChHHHH
Confidence 467889999999988653 3 9999999866 777764
No 31
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=26.76 E-value=1.7e+02 Score=18.35 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhHhh
Q 029855 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKN 56 (186)
Q Consensus 7 e~~~~~Aklaeq~ery~dm~~~mk~~~~~~~~~~~Lt~eERnLlsvayKn 56 (186)
+.+..+|.++.+.|+|++++.+.++.++.. |. +.+=..-++.+|..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~-~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PN-NAEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CC-CHHHHHHHHHHHHH
Confidence 346678999999999999999999999762 22 33444444444443
No 32
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.56 E-value=2.3e+02 Score=19.79 Aligned_cols=36 Identities=17% Similarity=0.458 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHhhHhhhhc----hhhhHHHHHHHHhhhhh
Q 029855 41 ELTVEERNLLSVAYKNVIG----SLRAAWRIISSIEQKEE 76 (186)
Q Consensus 41 ~Lt~eERnLlsvayKn~i~----~~R~s~R~l~~ieqke~ 76 (186)
.-+.+-|.+.-.+..++|. ..|++|++|-++-....
T Consensus 29 ~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa 68 (86)
T PF09324_consen 29 NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAA 68 (86)
T ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 4567788888888888877 66999999987655543
No 33
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=25.79 E-value=5.9e+02 Score=25.00 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=41.1
Q ss_pred CcHHhHHHHHHHHHHhcCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhHhhhhchhhhHHHHHHHHhh
Q 029855 4 PTREQYVYLAKLAEQAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQ 73 (186)
Q Consensus 4 ~~re~~~~~Aklaeq~ery~dm~~~mk~~~~~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieq 73 (186)
.+.+-+..+|....+.|+|++++....+++.. .+..+.-++|.| +..-.+...|.-..++++
T Consensus 152 ~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~------~p~~~~~~~~~a--~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 152 SSAREILLEAKSWDEIGQSEQADACFERLSRQ------HPEFENGYVGWA--QSLTRRGALWRARDVLQA 213 (694)
T ss_pred CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc------CCCcHHHHHHHH--HHHHHcCCHHHHHHHHHH
Confidence 34567888999999999999999999999852 224455666665 333333344444444433
No 34
>PHA02103 hypothetical protein
Probab=25.56 E-value=23 Score=26.78 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=11.5
Q ss_pred hcccchhhhhhccch
Q 029855 130 KGDYYRYLAEFKVGD 144 (186)
Q Consensus 130 kgDyyRYlaE~~~~~ 144 (186)
.-|||||..|-..|-
T Consensus 78 ipdyyryf~ee~e~i 92 (135)
T PHA02103 78 IPDYYRYFGEEAEGV 92 (135)
T ss_pred ChHHHHHhcccchhh
Confidence 469999998866553
No 35
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=25.09 E-value=1.8e+02 Score=18.12 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=29.8
Q ss_pred HhcCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhHhhhhchhhhHHHHHHHHhhhh
Q 029855 18 QAERYEEMVKFMDSLVTSSTPATELTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKE 75 (186)
Q Consensus 18 q~ery~dm~~~mk~~~~~~~~~~~Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqke 75 (186)
+.|+|++++...++++.. .+=+.+=+-.|..+|=.. |..-.|-+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR----NPDNPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH----TTTSHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 356677777777777654 222555555566555443 55556666666554443
No 36
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=24.61 E-value=1.5e+02 Score=19.41 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029855 10 VYLAKLAEQAERYEEMVKFMDSLVTS 35 (186)
Q Consensus 10 ~~~Aklaeq~ery~dm~~~mk~~~~~ 35 (186)
+....-.=|.|+|+++.++++.++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444455789999999999999853
No 37
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=24.56 E-value=3.1e+02 Score=26.00 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHh---hHhhhhchhhhHHHHHHHHhhhhhcccchhhHHHHHHHHHHHH
Q 029855 22 YEEMVKFMDSLVTSSTPATELTVEERNLLSV---AYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVE 95 (186)
Q Consensus 22 y~dm~~~mk~~~~~~~~~~~Lt~eERnLlsv---ayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie 95 (186)
.++.-++|+..... .+.-.+|..+|-. +|..++..-+..+..|..--++|....+.....++.+||.++.
T Consensus 121 L~~v~~~~~~~~~~----~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~ 193 (508)
T PF00901_consen 121 LEKVYKFMKGQEKV----EEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKID 193 (508)
T ss_pred HHHHHHHHHHhHhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 44555555554432 4455667777765 4667777888888888876777766556667788888888764
No 38
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=24.35 E-value=3.1e+02 Score=20.62 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=40.4
Q ss_pred CCHHHHHHHHhhHhhhhchhhhHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029855 42 LTVEERNLLSVAYKNVIGSLRAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILK 107 (186)
Q Consensus 42 Lt~eERnLlsvayKn~i~~~R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~ 107 (186)
+|.+|-|-|--..+.++...+...+.+..+.+.-............+.-...+..++...+++|-+
T Consensus 3 FTl~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 68 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEE 68 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777888778887777766544322211112334455556666677777666544
No 39
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=23.86 E-value=1.3e+02 Score=19.57 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029855 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (186)
Q Consensus 9 ~~~~Aklaeq~ery~dm~~~mk~~~~~ 35 (186)
+..+|.+....|+|++.+++..+.+..
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457888899999999999999999864
No 40
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=23.71 E-value=1.5e+02 Score=20.71 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029855 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (186)
Q Consensus 8 ~~~~~Aklaeq~ery~dm~~~mk~~~~ 34 (186)
.++.+|--+++.|||++++.+=+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456677788888999998887777664
No 41
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=23.07 E-value=1.5e+02 Score=19.73 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029855 8 QYVYLAKLAEQAERYEEMVKFMDSLVT 34 (186)
Q Consensus 8 ~~~~~Aklaeq~ery~dm~~~mk~~~~ 34 (186)
+++..|--.+++|+|++++.+.+..++
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667777888889988888888774
No 42
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=22.39 E-value=1.6e+02 Score=19.88 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=23.0
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 029855 7 EQYVYLAKLAEQAERYEEMVKFMDSLVT 34 (186)
Q Consensus 7 e~~~~~Aklaeq~ery~dm~~~mk~~~~ 34 (186)
..++-.|--.+.+|+|++.+.+..+.++
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566677778899999999999988885
No 43
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=22.03 E-value=3.2e+02 Score=20.67 Aligned_cols=29 Identities=14% Similarity=0.049 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029855 7 EQYVYLAKLAEQAERYEEMVKFMDSLVTS 35 (186)
Q Consensus 7 e~~~~~Aklaeq~ery~dm~~~mk~~~~~ 35 (186)
.-+..++.+....|+|++++..+++.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l 64 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRL 64 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34567778888888899988888888754
No 44
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=21.61 E-value=1.6e+02 Score=16.23 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 029855 9 YVYLAKLAEQAERYEEMVKFMDSLVTS 35 (186)
Q Consensus 9 ~~~~Aklaeq~ery~dm~~~mk~~~~~ 35 (186)
+--+|.+....|+|+++..+..+++..
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 345788888899999999999988854
No 45
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=20.77 E-value=5e+02 Score=21.78 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=28.8
Q ss_pred HHHHHHhhHhhhhchh-----hhHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029855 46 ERNLLSVAYKNVIGSL-----RAAWRIISSIEQKEEGRKNEEHVSLVKDYRSKVESELSDVCGSILKLLDSH 112 (186)
Q Consensus 46 ERnLlsvayKn~i~~~-----R~s~R~l~~ieqke~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~ 112 (186)
+-..+-+-..++|+.+ |.|+|+|...+- +++..+.+++...|.++.++||+.
T Consensus 110 di~tifvnlHHLiNeyRPhQaResLi~lmE~Qi---------------~~~~~~ve~~kk~~~~~~e~l~d~ 166 (223)
T KOG0570|consen 110 DIRTIFVNLHHLINEYRPHQARESLIMLMERQI---------------EQRSDIVEDFKKHLRQVREVLDDQ 166 (223)
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677788866 567777753211 123334445555566666665443
Done!