Query 029857
Match_columns 186
No_of_seqs 117 out of 253
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 07:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_P 60S ribosomal protein L 100.0 1E-114 3E-119 728.7 15.3 186 1-186 19-204 (204)
2 4a17_L RPL15, ribosomal protei 100.0 2E-114 6E-119 727.6 13.3 186 1-186 19-204 (204)
3 3jyw_L 60S ribosomal protein L 100.0 4E-109 1E-113 690.2 16.0 175 1-176 18-192 (192)
4 1vq8_M 50S ribosomal protein L 100.0 9E-107 3E-111 676.5 14.9 174 1-176 20-193 (194)
5 3j21_M 50S ribosomal protein L 100.0 3E-106 1E-110 673.7 13.3 174 1-176 19-192 (194)
6 1ffk_I Ribosomal protein L15E; 100.0 7E-105 3E-109 665.0 14.7 173 1-177 20-192 (194)
7 2iqy_A Phosphatidylethanolamin 59.5 5.5 0.00019 31.9 2.7 38 93-137 53-95 (190)
8 2jyz_A CG7054-PA, GH14779P, PE 58.3 8.5 0.00029 30.4 3.6 36 102-137 46-84 (179)
9 3axy_A Protein heading DATE 3A 57.1 10 0.00034 29.8 3.8 41 90-136 51-94 (170)
10 2gzq_A Phosphatidylethanolamin 55.0 12 0.0004 30.2 4.0 36 102-137 69-107 (200)
11 1wko_A Terminal flower 1 prote 50.6 15 0.00051 29.1 3.9 33 102-136 62-98 (180)
12 1u07_A TONB protein; beta-hair 42.8 34 0.0012 23.3 4.3 34 16-52 4-37 (90)
13 3k81_C MP18 RNA editing comple 37.9 16 0.00055 29.4 2.2 23 100-122 102-125 (164)
14 3n08_A Putative phosphatidylet 34.6 36 0.0012 26.5 3.7 33 102-134 34-68 (153)
15 4ax1_B Metallo-beta-lactamase 34.6 19 0.00064 28.2 2.1 29 94-122 43-77 (303)
16 4eyb_A Beta-lactamase NDM-1; m 34.2 19 0.00063 28.9 2.0 39 98-142 75-124 (270)
17 1fux_A Hypothetical 19.5 kDa p 34.2 25 0.00087 27.5 2.8 33 101-135 37-69 (166)
18 2lp1_A C99; alzheimer'S D memb 39.7 8.9 0.0003 30.1 0.0 40 66-116 60-99 (122)
19 2yxl_A PH0851 protein, 450AA l 31.5 47 0.0016 29.0 4.3 57 80-136 296-358 (450)
20 2b9e_A NOL1/NOP2/SUN domain fa 30.9 46 0.0016 28.0 4.0 57 78-134 137-200 (309)
21 1ixk_A Methyltransferase; open 29.5 52 0.0018 27.2 4.0 56 78-133 153-212 (315)
22 4f6r_C Stathmin-like domain R1 28.8 23 0.0008 26.2 1.6 11 110-120 15-25 (87)
23 3l6n_A Metallo-beta-lactamase; 28.1 28 0.00097 26.1 2.0 38 98-141 31-79 (219)
24 1fjj_A Hypothetical 17.1 kDa p 26.8 41 0.0014 26.2 2.8 33 101-135 36-68 (159)
25 1nr4_A CCL17, thymus and activ 26.6 27 0.00092 23.7 1.5 41 95-136 21-61 (71)
26 2frx_A Hypothetical protein YE 26.2 56 0.0019 29.3 3.9 51 77-132 151-211 (479)
27 2evv_A Hypothetical protein HP 25.9 28 0.00095 28.7 1.7 36 101-137 64-99 (207)
28 3ryc_E Stathmin-4; alpha-tubul 24.8 29 0.001 27.7 1.6 11 111-121 17-27 (143)
29 2ra4_A Small-inducible cytokin 24.7 30 0.001 23.8 1.5 42 95-137 23-64 (76)
30 1f2l_A Fractalkine; chemoattra 24.5 26 0.0009 24.2 1.2 42 95-137 21-62 (76)
31 2q8r_E CCL14; common CC chemok 23.9 33 0.0011 22.8 1.5 40 95-135 19-58 (66)
32 1xki_A VON ebner'S gland prote 23.6 68 0.0023 23.4 3.4 17 105-121 69-89 (162)
33 3q6v_A Beta-lactamase; metallo 23.6 32 0.0011 25.9 1.6 39 97-141 25-74 (233)
34 1wpx_B Carboxypeptidase Y inhi 22.8 67 0.0023 25.8 3.4 27 108-135 86-116 (220)
35 4hl2_A Beta-lactamase NDM-1; s 22.2 42 0.0014 25.8 2.0 19 98-121 48-66 (243)
36 3k7u_C MP18 RNA editing comple 21.7 47 0.0016 25.9 2.2 23 99-121 85-108 (148)
37 1sqg_A SUN protein, FMU protei 21.7 36 0.0012 29.4 1.7 27 110-136 314-343 (429)
38 3s26_A Neutrophil gelatinase-a 21.1 93 0.0032 23.6 3.8 25 93-117 62-86 (190)
39 1m2x_A Class B carbapenemase B 21.1 46 0.0016 25.2 2.0 20 97-121 26-45 (223)
40 2l5p_A Lipocalin 12; beta barr 21.1 81 0.0028 23.7 3.4 10 112-121 101-110 (184)
41 2q8t_A CCL14; common CC chemok 21.0 40 0.0014 23.0 1.5 40 95-135 27-66 (74)
42 3pfs_A Bromodomain and PHD fin 21.0 72 0.0025 25.6 3.2 30 93-123 35-64 (158)
43 2nxv_A ATP synthase subunits r 20.7 38 0.0013 26.6 1.5 9 112-120 47-55 (249)
44 3pp8_A Glyoxylate/hydroxypyruv 20.4 55 0.0019 27.8 2.6 44 87-135 21-65 (315)
45 2k9k_A TONB2; metal transport; 20.2 88 0.003 21.7 3.2 29 21-52 24-52 (106)
46 2zwr_A Metallo-beta-lactamase 20.1 51 0.0017 24.7 2.1 19 98-121 13-31 (207)
47 4fzv_A Putative methyltransfer 20.1 48 0.0016 28.9 2.2 26 110-135 222-252 (359)
No 1
>3iz5_P 60S ribosomal protein L15 (L15E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_P 2zkr_m
Probab=100.00 E-value=1e-114 Score=728.71 Aligned_cols=186 Identities=91% Similarity=1.515 Sum_probs=175.5
Q ss_pred ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857 1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK 80 (186)
Q Consensus 1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl 80 (186)
|+||+|+|||||||+|+||||++||||||||+||||||||||||||||++||+++|+|+|+|||||++||||+|||++||
T Consensus 19 ~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~~~kPk~~Gvn~lk~~rsl 98 (204)
T 3iz5_P 19 MRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNK 98 (204)
T ss_dssp HHHHHHHHHHHHHHSCSEEEESSCSCHHHHTTTCCCCSTTEEEEEEEEESSCCCCSCTTSCCCSCGGGCCSSSSCCSSCH
T ss_pred HHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeeCCCCCCccCCCcccCcccccccccCccccH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857 81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 160 (186)
Q Consensus 81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG 160 (186)
|+|||||||++||||||||||||+|||+|||||||||||+||||++||+|||||+|+|||||||||||||+|+|||+|||
T Consensus 99 q~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTSAGkk~RGLr~kG 178 (204)
T 3iz5_P 99 RSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKG 178 (204)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEEEEECSSEEEEEEEEEESSSHHHHTCTTTGGGTSGGGTTTTTTTCSHHHHHTTTTTCCS
T ss_pred HHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhccccccCCccccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCchhhhcccceeEEeecC
Q 029857 161 HLHHKARPSRRATWKRNQTLSLRRYR 186 (186)
Q Consensus 161 ~~~~k~~~S~ra~w~r~ntl~l~r~r 186 (186)
|+++|++||++|+|+++|||||+|||
T Consensus 179 ~~~~k~r~s~ra~w~r~ntl~l~r~r 204 (204)
T 3iz5_P 179 HTHHKARPSRRATWKRNQTVSLRRYR 204 (204)
T ss_dssp TTGGGTSSCTTTTTTC----------
T ss_pred CCcccCCcchhhhhhccceeeeEecC
Confidence 99999999999999999999999997
No 2
>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L
Probab=100.00 E-value=1.7e-114 Score=727.65 Aligned_cols=186 Identities=65% Similarity=1.163 Sum_probs=185.1
Q ss_pred ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857 1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK 80 (186)
Q Consensus 1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl 80 (186)
|+||+|+|||||||||+||||++||||||||+||||||||||||||||++||+++|+|+|+|||||++||||+|||++||
T Consensus 19 ~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~~~kPk~~Gvn~lk~~ksl 98 (204)
T 4a17_L 19 MSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYAIWRVRVRRGGRKRPVSKGIVYGKPSSVGINQLKFARNL 98 (204)
T ss_dssp HHHHHHHHHHHHHHSCSEEEESSCSCHHHHHHTTCCSSTTEEEEEEEEECSCCCCCCGGGCCCSCTTTCCCTTCCCSSCH
T ss_pred HHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeeCCCCCCccCCCcccCcccccccccCcchhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857 81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 160 (186)
Q Consensus 81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG 160 (186)
|+|||||||++||||||||||||+|||+|||||||||||+||||++||+|||||+|+|||||||||||||+|+|||+|||
T Consensus 99 q~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTsAGkk~RGLr~kG 178 (204)
T 4a17_L 99 RSCAEERVGKRVPELRVLNSYWVGQDGTYKFYEVILADPSHNAIRNDPRINWICESAHKHRELRGLTSAGRKGRGLRVKG 178 (204)
T ss_dssp HHHHHHHHHHHSCSSEEEEEEEEECCSSEEEEEEEEECTTSHHHHHCTTTGGGGSGGGTTTTTTTCSHHHHHHTTTTCCS
T ss_pred HHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhccccccCcccccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCchhhhcccceeEEeecC
Q 029857 161 HLHHKARPSRRATWKRNQTLSLRRYR 186 (186)
Q Consensus 161 ~~~~k~~~S~ra~w~r~ntl~l~r~r 186 (186)
|+++|++||++|+|+++|||||+|||
T Consensus 179 ~~~~k~r~s~ra~w~r~ntl~l~r~r 204 (204)
T 4a17_L 179 HRAKSLRTSRKGNWRARQMLKLRRYR 204 (204)
T ss_dssp TTTGGGTTTHHHHHHHHHCCCCCSCC
T ss_pred CCcccCCcchhhhhhccceeeeEecC
Confidence 99999999999999999999999997
No 3
>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L
Probab=100.00 E-value=3.7e-109 Score=690.18 Aligned_cols=175 Identities=72% Similarity=1.238 Sum_probs=173.9
Q ss_pred ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857 1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK 80 (186)
Q Consensus 1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl 80 (186)
|+||+|+|||||||||+||||++||||||||+||||||||||||||||++||+++|+|+|+|||||++||||+|||++||
T Consensus 18 ~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~~gkPk~~Gvn~lk~~ksl 97 (192)
T 3jyw_L 18 LRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSL 97 (192)
T ss_dssp HHHHHHHHHHHHHHCCSEEEESSCSSHHHHHHHHCCCSTTCEEEEEECCCSSSBCCCCCSCSCSSCSSCCSBCCCCSSCH
T ss_pred HHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeECCCCCCccCCCcccCcccccccccCccccH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857 81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 160 (186)
Q Consensus 81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG 160 (186)
|+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+|+|||||||||||||+|+||| |||
T Consensus 98 q~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTsAGkk~RGL-~kG 176 (192)
T 3jyw_L 98 RATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKG 176 (192)
T ss_dssp HHHHHHHHHTTSSSSEEEEEEEEEECSSCEEEEEEEECSSCSSTTTSSTTTGGGSGGGSSTTTTTCSTTGGGGTCC-CCS
T ss_pred HHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhccccccCCcccccccccc-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CcccccCCCchhhhcc
Q 029857 161 HLHHKARPSRRATWKR 176 (186)
Q Consensus 161 ~~~~k~~~S~ra~w~r 176 (186)
|+++||+||++|+|++
T Consensus 177 ~~~~k~~~s~ra~w~r 192 (192)
T 3jyw_L 177 HKFNNTKAGRRKTWKR 192 (192)
T ss_dssp STTSSSSSCHHHHTCC
T ss_pred cCcccCCCcccccccC
Confidence 9999999999999986
No 4
>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ...
Probab=100.00 E-value=9.1e-107 Score=676.46 Aligned_cols=174 Identities=45% Similarity=0.694 Sum_probs=172.8
Q ss_pred ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857 1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK 80 (186)
Q Consensus 1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl 80 (186)
|+||+|+|||||||+|+||||++||||||||+|||||||||||||||||+||+++|+|+|+ |||++||||+|||++||
T Consensus 20 ~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~--~kPk~~Gv~~lk~~rsl 97 (194)
T 1vq8_M 20 LAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAG--RRSKRQGVTRITRRKDI 97 (194)
T ss_dssp HHHHHHHHHHHHTTSCSEEEESSCSSHHHHHHHTCCSSTTEEEEEEEEECSSCCCCCCSSC--CCGGGTCCSSCCCSSCH
T ss_pred HHHHHHHHHHHHhCCCceEEcCCCCChhHHHhcCCccCCeEEEEEEEeccCCCCCCCcCCC--CCccccCccccCccccH
Confidence 7899999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857 81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 160 (186)
Q Consensus 81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG 160 (186)
|+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+|+|||||||||||||+|+|||++||
T Consensus 98 q~iAEERagrk~~nLrVLNSYWV~eD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTsaGkk~RGL~~kG 177 (194)
T 1vq8_M 98 QRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKG 177 (194)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEEEEEETTEEEEEEEEECTTCHHHHTCTTTGGGGSGGGTTGGGGTCSHHHHHHTTCSCSS
T ss_pred HHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEEEcCCcHhhhcCcccccccCcccccchhccccccccccCccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCchhhhcc
Q 029857 161 HLHHKARPSRRATWKR 176 (186)
Q Consensus 161 ~~~~k~~~S~ra~w~r 176 (186)
|+++|++||++|+|++
T Consensus 178 ~~~~k~~~~~ra~w~~ 193 (194)
T 1vq8_M 178 KGSEKTRPSLRSNGGK 193 (194)
T ss_dssp TTCTTTSSCTTTTTSC
T ss_pred CCcccCCcccchhhcc
Confidence 9999999999999986
No 5
>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.8e-106 Score=673.75 Aligned_cols=174 Identities=53% Similarity=0.851 Sum_probs=172.7
Q ss_pred ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857 1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK 80 (186)
Q Consensus 1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl 80 (186)
|+||+|+|||||||+|+||||++||||||||+||||||||||||||||++||+++|+|+|+ |||++||||+|||++||
T Consensus 19 ~~~l~r~R~~e~Rq~~ai~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVrrGgrkr~~pkg~--~kPk~~Gv~~lk~~ksl 96 (194)
T 3j21_M 19 VGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKGG--RKPSKMGQVKYSPKKSL 96 (194)
T ss_dssp HHHHHHHHHHHHHHSCSEEEESSCSSHHHHHHHHCCCSTTEEEEEEEEESSCCCCCCCSSC--CCTTTTCCSSCCCSSCH
T ss_pred HHHHHHHHHHHHhccCceeecCCCCChhHHHhcCccccCceEEEEEEEeeCCCCCCCcCCC--CCcccccccccCccccH
Confidence 6899999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857 81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 160 (186)
Q Consensus 81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG 160 (186)
|+|||||||++||||||||||||+|||+|||||||||||+||||++||+|||||+|+|||||||||||||+|+|||++||
T Consensus 97 q~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTsAGkk~RGL~~kG 176 (194)
T 3j21_M 97 QWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKG 176 (194)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEEEEECSSEEEEEEEEECSSCHHHHHSTTTGGGGSGGGTTHHHHCCSHHHHHHHTTTCSS
T ss_pred HHHHHHHHhccCCCceeeeceeecCCCCceeEEEEEEcCCChhhccCCccccccccccccccccCccccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCchhhhcc
Q 029857 161 HLHHKARPSRRATWKR 176 (186)
Q Consensus 161 ~~~~k~~~S~ra~w~r 176 (186)
|+++|++||++|+|++
T Consensus 177 ~~~~k~rps~ra~~~~ 192 (194)
T 3j21_M 177 KGAEKVRPSIRANEGK 192 (194)
T ss_dssp TTCSSSSSCSTTSSSC
T ss_pred CcccccCccccccccc
Confidence 9999999999999986
No 6
>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2
Probab=100.00 E-value=7.3e-105 Score=664.99 Aligned_cols=173 Identities=48% Similarity=0.805 Sum_probs=171.4
Q ss_pred ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857 1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK 80 (186)
Q Consensus 1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl 80 (186)
|+||+|+|||||||+|+||||++||||||||+||||||||||||||||++||+++|+|+|+ |||++||||+|||++||
T Consensus 20 ~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~--~kPk~~Gvn~lk~~rsl 97 (194)
T 1ffk_I 20 VGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNKG--RKSKKMMVNRRPRKKNL 97 (194)
T ss_pred HHHHHHHHHHHHhCCCceEEcCCCCchhHHHhcCCccCCeEEEEEEEeccCCCCCCCcCCC--CCccccCccccCccccH
Confidence 7899999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857 81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG 160 (186)
Q Consensus 81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG 160 (186)
|+|||||||++||||||||||||+|||+|||||||||||+||||++||+|||||+ |||||||||||||+|+|||++||
T Consensus 98 q~iAEERagrk~~nLrVLNSYWV~qD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~--hk~Re~RGLTsaGkk~RGL~~kG 175 (194)
T 1ffk_I 98 QWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRVYRGLTSAGRKARGLRRKG 175 (194)
T ss_pred HHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEEEcCCcHhhhcCcccccccc--cccchhccccccccccCccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CcccccCCCchhhhccc
Q 029857 161 HLHHKARPSRRATWKRN 177 (186)
Q Consensus 161 ~~~~k~~~S~ra~w~r~ 177 (186)
|+++|++||++|+|++.
T Consensus 176 ~~~~k~~~~~ra~w~r~ 192 (194)
T 1ffk_I 176 RGAEKVRPSLRANFRKK 192 (194)
T ss_pred CCcccCCcchhhhhhhc
Confidence 99999999999999974
No 7
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A* 1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Probab=59.51 E-value=5.5 Score=31.86 Aligned_cols=38 Identities=18% Similarity=0.426 Sum_probs=26.9
Q ss_pred CC-ceeeeeeecccCCCceEEEEEEeeccccccccCC----CCceeccCC
Q 029857 93 GG-LKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDP----RINWICKPV 137 (186)
Q Consensus 93 ~n-LrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp----~~~WI~~~~ 137 (186)
|. |+ |-+.+.. +.|=|||+||+-|.- .|| -+-||.-..
T Consensus 53 P~~l~-----~~~~~~~-~~ytlvm~DpDaP~~-~~p~~~~~~HWlv~nI 95 (190)
T 2iqy_A 53 PSSIS-----WDGLDPG-KLYTLVLTDPDAPSR-KDPKFREWHHFLVVNM 95 (190)
T ss_dssp CSEEE-----CTTCCTT-SEEEEEEEESSSSCS-SSCTTCCEEEEEEEEE
T ss_pred CceEE-----EccCCCC-CEEEEEEECCCCCCC-CCCCcCCEEEEEEeCC
Confidence 66 65 5556644 999999999999974 444 357876543
No 8
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical shift variations, titration, unknown function; NMR {Drosophila melanogaster}
Probab=58.35 E-value=8.5 Score=30.36 Aligned_cols=36 Identities=11% Similarity=0.399 Sum_probs=26.6
Q ss_pred ecccCCCceEEEEEEeeccccccccC---CCCceeccCC
Q 029857 102 WINEDSTYKYFEVILVDAAHNAIRND---PRINWICKPV 137 (186)
Q Consensus 102 wV~eD~~yK~fEVIlvDp~h~aIr~D---p~~~WI~~~~ 137 (186)
|-+.+..-+.|=|||+||+-|.-.++ .-+-||.-..
T Consensus 46 ~~~~p~~t~~ytlvm~DpDaP~~~~p~~~~~~HWlv~nI 84 (179)
T 2jyz_A 46 WSGLEGKSNLLTLLMVDPDAPTRQDPKYREILHWSVVNI 84 (179)
T ss_dssp CTTTCCSCSEEEEEEECCCSSCTTCCSSCCCSCCEEECC
T ss_pred EeCCCCCceeEEEEEeCCCCCCCccCCCccEEEEEEECC
Confidence 55666667999999999999975432 4578887554
No 9
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Probab=57.09 E-value=10 Score=29.84 Aligned_cols=41 Identities=10% Similarity=0.316 Sum_probs=26.5
Q ss_pred hccCCceeeeeeecccCCCceEEEEEEeeccccccccC---CCCceeccC
Q 029857 90 RKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND---PRINWICKP 136 (186)
Q Consensus 90 rk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~D---p~~~WI~~~ 136 (186)
..-|.|+ |-+.+.. +.|=|||+||+-|.-.++ .-+-||.-.
T Consensus 51 ~~~P~l~-----~~~~~~~-~~ytlvm~DpDaP~~~~p~~~~~~HWlv~n 94 (170)
T 3axy_A 51 THQPRVE-----VGGNDMR-TFYTLVMVDPDAPSPSDPNLREYLHWLVTD 94 (170)
T ss_dssp SSCCEEE-----ECCSCTT-CEEEEEEEETTCSCTTSCTTCSEEEEEEEE
T ss_pred CcCCeEE-----EeCCCCC-cEEEEEEECCCCCCCccCCCccEEEEEEeC
Confidence 4455553 3344544 899999999999974332 345777644
No 10
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A
Probab=55.03 E-value=12 Score=30.23 Aligned_cols=36 Identities=11% Similarity=0.326 Sum_probs=24.5
Q ss_pred ecccCCCceEEEEEEeeccccccccC---CCCceeccCC
Q 029857 102 WINEDSTYKYFEVILVDAAHNAIRND---PRINWICKPV 137 (186)
Q Consensus 102 wV~eD~~yK~fEVIlvDp~h~aIr~D---p~~~WI~~~~ 137 (186)
|-+.+..-+.|=|||+||+-|.-.++ .-+-||.-..
T Consensus 69 ~~~~~~~~~~ytLvm~DPDaP~~~~~~~~~~~HWlv~nI 107 (200)
T 2gzq_A 69 FSEEPPEDYCYILFMIDPDFPSRRRPDGRDYVHWAVSGI 107 (200)
T ss_dssp ESSCCCTTEEEEEEEEETTCSCSSCCTTCSEEEEEEEEE
T ss_pred EccCCCCCceEEEEEECCCCCCCCCCCCCCEEEEEEeCC
Confidence 44555556999999999999865433 2356776443
No 11
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein; 1.80A {Arabidopsis thaliana} PDB: 1qou_A
Probab=50.62 E-value=15 Score=29.06 Aligned_cols=33 Identities=15% Similarity=0.475 Sum_probs=22.6
Q ss_pred ecccC-CCceEEEEEEeeccccccccC---CCCceeccC
Q 029857 102 WINED-STYKYFEVILVDAAHNAIRND---PRINWICKP 136 (186)
Q Consensus 102 wV~eD-~~yK~fEVIlvDp~h~aIr~D---p~~~WI~~~ 136 (186)
|-+.| ++ .|=|||+||+-|.-.++ .-+-||.-.
T Consensus 62 ~~~~~~~~--~ytlvm~DPDaP~~~~p~~~~~~HWlv~n 98 (180)
T 1wko_A 62 IHGGDLRS--FFTLVMIDPDVPGPSDPFLKEHLHWIVTN 98 (180)
T ss_dssp EESSCTTC--EEEEEEEECSCSBTTBCTTCCEEEEEEEE
T ss_pred EecCCCCc--eEEEEEeCCCCCCCccCCCccEEEEEEec
Confidence 33444 44 99999999999975432 346787654
No 12
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=42.76 E-value=34 Score=23.27 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=27.0
Q ss_pred CceeEeCCCCchhHHhhcCCccccceEEEEEEeeecC
Q 029857 16 PSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGG 52 (186)
Q Consensus 16 ~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGg 52 (186)
|....-..|.-|..|++.|. +|.|++++.|..-|
T Consensus 4 p~~l~~~~~~YP~~a~~~~~---~G~V~v~~~i~~~G 37 (90)
T 1u07_A 4 PRALSRNQPQYPARAQALRI---EGQVKVKFDVTPDG 37 (90)
T ss_dssp CCEEECCCCCCCHHHHHHTC---CEEEEEEEEECTTS
T ss_pred CcCcccCCCCCcHHHHHCCC---ceEEEEEEEECCCC
Confidence 44455567889999999986 79999999998654
No 13
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=37.93 E-value=16 Score=29.41 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=17.6
Q ss_pred eeecccCC-CceEEEEEEeecccc
Q 029857 100 SYWINEDS-TYKYFEVILVDAAHN 122 (186)
Q Consensus 100 SYwV~eD~-~yK~fEVIlvDp~h~ 122 (186)
.=|..+|| .+.+|+||.|+|..-
T Consensus 102 r~w~D~~g~k~~~~~~i~V~~~~g 125 (164)
T 3k81_C 102 SPQLEPSCNKHFYFPYIQVQPPHG 125 (164)
T ss_dssp ECCCCSSCSCCCCEEEEEECTTTC
T ss_pred eeEEcCCCCEEEEEEEEEEeCCCC
Confidence 34778777 567799999999754
No 14
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} SCOP: b.17.1.0
Probab=34.64 E-value=36 Score=26.51 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=21.5
Q ss_pred ecccCCCceEEEEEEeecccccccc--CCCCceec
Q 029857 102 WINEDSTYKYFEVILVDAAHNAIRN--DPRINWIC 134 (186)
Q Consensus 102 wV~eD~~yK~fEVIlvDp~h~aIr~--Dp~~~WI~ 134 (186)
|-+...--|.|=|||+||+-|.-.. -+-+-||.
T Consensus 34 w~~~P~~tks~ali~~DpDAPs~~~~~~~~~HWvv 68 (153)
T 3n08_A 34 FSDVPREAKSLVLIVEDPDVPPSVREDGLWIHWIV 68 (153)
T ss_dssp EECCCTTCCEEEEEEEETTSCTTTCTTSCEEEEEE
T ss_pred EcCCCCCCeEEEEEEECCCCCCccCCCCcEEEEEE
Confidence 5544444589999999999995331 13355664
No 15
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Probab=34.63 E-value=19 Score=28.23 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=17.8
Q ss_pred Cceee-eeeecccCCCceEE-----EEEEeecccc
Q 029857 94 GLKVL-NSYWINEDSTYKYF-----EVILVDAAHN 122 (186)
Q Consensus 94 nLrVL-NSYwV~eD~~yK~f-----EVIlvDp~h~ 122 (186)
.++|. |.|||++.+..-|+ ++|||||--+
T Consensus 43 ~~~i~~~~~~vg~~~~~~~li~~~~~~iLiD~G~~ 77 (303)
T 4ax1_B 43 PLKVYGNTWYVGTCGISALLVTSDAGHILVDAATP 77 (303)
T ss_dssp CEEEETTEEECSBSSSCCEEECCTTCEEEECCBST
T ss_pred CeEEECCceEeCCCCceEEEEEeCCcEEEEECCCc
Confidence 34444 56777665544443 4799999853
No 16
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=34.21 E-value=19 Score=28.85 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=25.9
Q ss_pred eeeeecccCCCceEEEEEEeeccc-c--------ccc--cCCCCceeccCCccccc
Q 029857 98 LNSYWINEDSTYKYFEVILVDAAH-N--------AIR--NDPRINWICKPVHKHRE 142 (186)
Q Consensus 98 LNSYwV~eD~~yK~fEVIlvDp~h-~--------aIr--~Dp~~~WI~~~~hkhRe 142 (186)
=|+|-|..|+ |+|||||-- + .|+ .|..|.+|.. .|-|=.
T Consensus 75 ~N~ylv~~~~-----~~ilIDtg~~~~~~~~l~~~i~~~~~~~I~~Ii~-TH~H~D 124 (270)
T 4eyb_A 75 SNGLIVRDGG-----RVLVVDTAWTDDQTAQILNWIKQEINLPVALAVV-THAHQD 124 (270)
T ss_dssp EEEEEEEETT-----EEEEESCCSSHHHHHHHHHHHHHHTCCCEEEEEE-CSSSHH
T ss_pred eEEEEEEECC-----EEEEEeCCCCHHHHHHHHHHHHHhcCCceEEEEe-CCCChh
Confidence 3899997664 799999852 2 122 3667888764 566643
No 17
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta protein, unknown function; 1.81A {Escherichia coli} SCOP: b.17.1.2
Probab=34.17 E-value=25 Score=27.55 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=23.0
Q ss_pred eecccCCCceEEEEEEeeccccccccCCCCceecc
Q 029857 101 YWINEDSTYKYFEVILVDAAHNAIRNDPRINWICK 135 (186)
Q Consensus 101 YwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~ 135 (186)
.|-+...--|.|=|||+||+-|.- -+-+-||.-
T Consensus 37 ~w~~~P~~t~s~ali~~DPDAP~~--~~~~HW~v~ 69 (166)
T 1fux_A 37 TWSGVPEGTKSFAVTVYDPDAPTG--SGWWHWTVV 69 (166)
T ss_dssp EEECCCTTCCEEEEEEEETTSTTT--TCEEEEEEE
T ss_pred EEeCCCCCCeEEEEEEECCCCCCC--CcEEEeEEe
Confidence 455543334999999999999942 345678664
No 18
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=39.71 E-value=8.9 Score=30.09 Aligned_cols=40 Identities=35% Similarity=0.663 Sum_probs=25.0
Q ss_pred cccccceecccccchhHHHHHHhhhccCCceeeeeeecccCCCceEEEEEE
Q 029857 66 PTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVIL 116 (186)
Q Consensus 66 Pk~~Gvn~lk~~~slq~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIl 116 (186)
|-++|+...-+ .++-| -++..||.+ |-| ||=||||||.+-
T Consensus 60 ~~s~GfvEVDp-----~~TPE--ERHva~MQ~-nGY---ENPTYKffE~~~ 99 (122)
T 2lp1_A 60 SIHHGVVEVDA-----AVTPE--ERHLSKMQQ-NGY---ENPTYKFFEQMQ 99 (122)
Confidence 55678765544 23333 345666664 334 899999999763
No 19
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=31.53 E-value=47 Score=28.97 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=32.5
Q ss_pred hhHHHHHHhhhc-cCCceeeeeeecccCCCc--eEEEEEEeeccc---cccccCCCCceeccC
Q 029857 80 KRSVAEERAGRK-LGGLKVLNSYWINEDSTY--KYFEVILVDAAH---NAIRNDPRINWICKP 136 (186)
Q Consensus 80 lq~iAEeR~grk-~~nLrVLNSYwV~eD~~y--K~fEVIlvDp~h---~aIr~Dp~~~WI~~~ 136 (186)
.-..|++.+.+. .+|.++++.-.-.-+..+ .-|.+||+||-. -.++++|++.|.-++
T Consensus 296 ~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~ 358 (450)
T 2yxl_A 296 RMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLRE 358 (450)
T ss_dssp HHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCT
T ss_pred HHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCH
Confidence 334555555432 346665543221111111 359999999844 467889999986544
No 20
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=30.89 E-value=46 Score=27.97 Aligned_cols=57 Identities=9% Similarity=0.063 Sum_probs=24.9
Q ss_pred cchhHHHHHHhhhc-cCCceeeeeeecccC---CCceEEEEEEeecccc---ccccCCCCceec
Q 029857 78 RSKRSVAEERAGRK-LGGLKVLNSYWINED---STYKYFEVILVDAAHN---AIRNDPRINWIC 134 (186)
Q Consensus 78 ~slq~iAEeR~grk-~~nLrVLNSYwV~eD---~~yK~fEVIlvDp~h~---aIr~Dp~~~WI~ 134 (186)
...-.+|++.+-+. +.|.++++.-...-+ ..+.-|.+||+||-.. .++++|++.|..
T Consensus 137 ~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~ 200 (309)
T 2b9e_A 137 AKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAG 200 (309)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC--------------
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhc
Confidence 33344556655442 357777765432211 1123499999999653 588889988854
No 21
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=29.45 E-value=52 Score=27.19 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=24.9
Q ss_pred cchhHHHHHHhhhc-cCCceeeeeeecccCCCceEEEEEEeeccc---cccccCCCCcee
Q 029857 78 RSKRSVAEERAGRK-LGGLKVLNSYWINEDSTYKYFEVILVDAAH---NAIRNDPRINWI 133 (186)
Q Consensus 78 ~slq~iAEeR~grk-~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h---~aIr~Dp~~~WI 133 (186)
...-.+|++++.+. .+|+++++.-.-.-+..-.-|.+||+||-. -.++.+|++.|-
T Consensus 153 ~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~ 212 (315)
T 1ixk_A 153 ENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWN 212 (315)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhc
Confidence 33444555555432 346666553221110011249999999863 458889988763
No 22
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=28.82 E-value=23 Score=26.18 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=9.4
Q ss_pred eEEEEEEeecc
Q 029857 110 KYFEVILVDAA 120 (186)
Q Consensus 110 K~fEVIlvDp~ 120 (186)
-=|||||-+|+
T Consensus 15 qafEvILkpps 25 (87)
T 4f6r_C 15 QSWEVILKPPS 25 (87)
T ss_dssp EEEEEEEECCC
T ss_pred cceEEEecCCC
Confidence 35999999987
No 23
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=28.09 E-value=28 Score=26.05 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=24.2
Q ss_pred eeeeecccCCCceEEEEEEeecccc---------ccc--cCCCCceeccCCcccc
Q 029857 98 LNSYWINEDSTYKYFEVILVDAAHN---------AIR--NDPRINWICKPVHKHR 141 (186)
Q Consensus 98 LNSYwV~eD~~yK~fEVIlvDp~h~---------aIr--~Dp~~~WI~~~~hkhR 141 (186)
-|||.|..++ ++|||||--. .|. .+.++.+|.- .|-|-
T Consensus 31 ~n~~li~~~~-----~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~-TH~H~ 79 (219)
T 3l6n_A 31 ANSMYLVTKK-----GVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFA-THSHD 79 (219)
T ss_dssp EEEEEEEETT-----EEEEESCCSSGGGHHHHHHHHHHHHSCCEEEEEC-SSSST
T ss_pred ceEEEEEeCC-----EEEEEeCCCChHHHHHHHHHHHHhcCCceeEEEe-cCCCc
Confidence 4889887654 7999999743 222 2456776654 45454
No 24
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB family, lipid binding protein; HET: MSE EPE; 1.66A {Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Probab=26.78 E-value=41 Score=26.18 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=22.6
Q ss_pred eecccCCCceEEEEEEeeccccccccCCCCceecc
Q 029857 101 YWINEDSTYKYFEVILVDAAHNAIRNDPRINWICK 135 (186)
Q Consensus 101 YwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~ 135 (186)
-|-+...--|.|=|||+||+-|.- -+-+-||.-
T Consensus 36 ~w~~~P~~t~s~ali~~DPDAP~~--~~~~HW~v~ 68 (159)
T 1fjj_A 36 AWDDVPAGTKSFVVTCYDPDAPTG--SGWWHWVVV 68 (159)
T ss_dssp EEECCCTTCCEEEEEEEETTSTTT--TCEEEEEEE
T ss_pred EEcCCCCCCeEEEEEEECCCCCCC--CcEEEEEEE
Confidence 455543335899999999999951 245677664
No 25
>1nr4_A CCL17, thymus and activation-regulated chemokine, CC chemokine; TARC, cytokine, chemotaxis; 1.72A {Synthetic} SCOP: d.9.1.1 PDB: 1nr2_A
Probab=26.61 E-value=27 Score=23.68 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=33.5
Q ss_pred ceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccC
Q 029857 95 LKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKP 136 (186)
Q Consensus 95 LrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~ 136 (186)
++.+-||.+ .++.=.--|||+.--....|-.||+-.|+-+-
T Consensus 21 ~~~I~~y~~-t~~~C~~~aVIf~tk~g~~vC~dP~~~WVq~~ 61 (71)
T 1nr4_A 21 LRKLKTWYQ-TSEDCSRDAIVFVTVQGRAICSDPNNKRVKNA 61 (71)
T ss_dssp GGGEEEEEE-CCTTSSSCCEEEEETTSCEEEECTTSHHHHHH
T ss_pred hhHeeEEEE-CCCCCCccEEEEEeCCCCEEeCCCChHHHHHH
Confidence 566778887 66666678999999998999999999998653
No 26
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=26.21 E-value=56 Score=29.29 Aligned_cols=51 Identities=24% Similarity=0.349 Sum_probs=32.0
Q ss_pred ccchhHHHHHHhhhc-cCCceeeeeeecccCCC------ceEEEEEEeeccc---cccccCCCCce
Q 029857 77 QRSKRSVAEERAGRK-LGGLKVLNSYWINEDST------YKYFEVILVDAAH---NAIRNDPRINW 132 (186)
Q Consensus 77 ~~slq~iAEeR~grk-~~nLrVLNSYwV~eD~~------yK~fEVIlvDp~h---~aIr~Dp~~~W 132 (186)
....-.+|++.+.+- +.|+++++. |+. ...|.+||+||-. -.++.||++.|
T Consensus 151 s~~~l~~~~~n~~r~g~~nv~~~~~-----D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~ 211 (479)
T 2frx_A 151 SASRVKVLHANISRCGISNVALTHF-----DGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALK 211 (479)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEECC-----CSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSS
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEeC-----CHHHhhhhccccCCEEEECCCcCCcccccCCHHHHh
Confidence 334445566665432 456666653 332 1359999999865 35889998866
No 27
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer, structural genomics, PSI, prote structure initiative; HET: MSE; 2.59A {Helicobacter pylori}
Probab=25.94 E-value=28 Score=28.68 Aligned_cols=36 Identities=14% Similarity=0.460 Sum_probs=26.2
Q ss_pred eecccCCCceEEEEEEeeccccccccCCCCceeccCC
Q 029857 101 YWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPV 137 (186)
Q Consensus 101 YwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~ 137 (186)
-|=+-++ -|.|=|||+||+-|.-..-+=+-||.-..
T Consensus 64 ~W~~~~g-tks~aLvm~DPDAP~~~g~~~~HWvv~NI 99 (207)
T 2evv_A 64 SWQKVEG-AQSYALELIDHDAQKVCGMPFVHWVVGNI 99 (207)
T ss_dssp EECCCTT-CSEEEEEEEETTHHHHHSSCEEEEEEEEE
T ss_pred EEecCCC-CeEEEEEEECCCCCCCCCCcEEEEEEeCC
Confidence 3655544 59999999999999754335678877655
No 28
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=24.81 E-value=29 Score=27.66 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=9.5
Q ss_pred EEEEEEeeccc
Q 029857 111 YFEVILVDAAH 121 (186)
Q Consensus 111 ~fEVIlvDp~h 121 (186)
=|||||-.|+-
T Consensus 17 afEvIL~pps~ 27 (143)
T 3ryc_E 17 SWEVILKPPSF 27 (143)
T ss_dssp EEEEEEECCSS
T ss_pred ceeeeecCCCC
Confidence 59999999974
No 29
>2ra4_A Small-inducible cytokine A13; CCL13, MCP-4, CC chemokine family, chemotaxis, monocytes, CY inflammatory response, pyrrolidone carboxylic acid; 1.70A {Homo sapiens}
Probab=24.72 E-value=30 Score=23.77 Aligned_cols=42 Identities=29% Similarity=0.394 Sum_probs=34.3
Q ss_pred ceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCC
Q 029857 95 LKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPV 137 (186)
Q Consensus 95 LrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~ 137 (186)
++.+-||.+ .++.=.--|||+.--....|-.||+-.|+-+-+
T Consensus 23 ~~~I~~y~~-~~~~C~~~aVIf~tk~g~~vCadP~~~WVq~~i 64 (76)
T 2ra4_A 23 LQRLKSYVI-TTSRCPQKAVIFRTKLGKEICADPKEKWVQNYM 64 (76)
T ss_dssp GGGEEEEEE-CCTTSSSCCEEEEETTSCEEEECTTSHHHHHHH
T ss_pred hhHeeEEEE-CCCCCCCcEEEEEEcCCCEEeCCCChHHHHHHH
Confidence 566788888 666666789999999989999999999986543
No 30
>1f2l_A Fractalkine; chemoattractant, neurotactin, cytokine; 2.00A {Homo sapiens} SCOP: d.9.1.1 PDB: 3ona_B 1b2t_A
Probab=24.54 E-value=26 Score=24.22 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=34.3
Q ss_pred ceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCC
Q 029857 95 LKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPV 137 (186)
Q Consensus 95 LrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~ 137 (186)
++.+-||.+ .++.=.--|||+.--....|--||+-.|+-+-+
T Consensus 21 ~~~I~~y~~-t~~~C~~~aVIf~tk~gr~vCadP~~~WVq~~i 62 (76)
T 1f2l_A 21 VALLIHYQQ-NQASCGKRAIILETRQHRLFCADPKEQWVKDAM 62 (76)
T ss_dssp GGGEEEEEE-CCGGGSSCCEEEEETTCCEEEECTTSHHHHHHH
T ss_pred hhHeeEEEE-CCCCCCCeEEEEEEcCCCEEeCCCChHHHHHHH
Confidence 566778888 666666789999999889999999999987544
No 31
>2q8r_E CCL14; common CC chemokine fold, cytokine; 1.82A {Homo sapiens}
Probab=23.88 E-value=33 Score=22.80 Aligned_cols=40 Identities=10% Similarity=0.330 Sum_probs=32.5
Q ss_pred ceeeeeeecccCCCceEEEEEEeeccccccccCCCCceecc
Q 029857 95 LKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICK 135 (186)
Q Consensus 95 LrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~ 135 (186)
++.+-||.+ .++.=.--|||+.--....|--||+-.|+-+
T Consensus 19 ~~~I~~y~~-~~~~C~~~aVIf~tk~g~~vC~dP~~~WVq~ 58 (66)
T 2q8r_E 19 RQRIMDYYE-TNSQCSKPGIVFITKRGHSVCTNPSDKWVQD 58 (66)
T ss_dssp GGGEEEEEE-CCTTSSSCCEEEEETTSCEEEECTTSHHHHH
T ss_pred hHHeeEEEE-CCCCCCCceEEEEEeCCCEEeCCCChHHHHH
Confidence 566778888 5666666899999998899999999999764
No 32
>1xki_A VON ebner'S gland protein; beta barrel, ligand binding protein, transport protein; 1.80A {Homo sapiens} SCOP: b.60.1.1 PDB: 3eyc_A
Probab=23.65 E-value=68 Score=23.42 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=9.5
Q ss_pred cCCCceE----EEEEEeeccc
Q 029857 105 EDSTYKY----FEVILVDAAH 121 (186)
Q Consensus 105 eD~~yK~----fEVIlvDp~h 121 (186)
++|.++. ++|.++|++.
T Consensus 69 ~~g~~~v~~g~~~~~vldtdY 89 (162)
T 1xki_A 69 EPGKYTADGGKHVAYIIRSHV 89 (162)
T ss_dssp STTEEEEGGGTEEEEEEECSS
T ss_pred CCCEEEEeCCeEEEEEEEcCC
Confidence 4566664 3556666543
No 33
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=23.62 E-value=32 Score=25.86 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=23.8
Q ss_pred eeeeeecccCCCceEEEEEEeecccc---------ccc--cCCCCceeccCCcccc
Q 029857 97 VLNSYWINEDSTYKYFEVILVDAAHN---------AIR--NDPRINWICKPVHKHR 141 (186)
Q Consensus 97 VLNSYwV~eD~~yK~fEVIlvDp~h~---------aIr--~Dp~~~WI~~~~hkhR 141 (186)
--|||.|..++ ++|||||--. .|+ .+.++.+|.- .|-|-
T Consensus 25 ~~n~~li~~~~-----~~iLiD~G~~~~~~~~~~~~l~~~~~~~i~~ii~-TH~H~ 74 (233)
T 3q6v_A 25 QENSMVYIGTD-----GITIIGATWTPETAETLYKEIRKVSPLPINEVIN-TNYHT 74 (233)
T ss_dssp CEEEEEEECSS-----CEEEESCCSSHHHHHHHHHHHHHHCCCCEEEEEC-SSSSH
T ss_pred CCcEEEEEeCC-----eEEEEECCCCHHHHHHHHHHHHHhcCCCcEEEEE-CCCCh
Confidence 35899887654 5899997542 122 2456666653 45554
No 34
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine proteinase inhibitor, Pro inhibitor complex; HET: NAG NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Probab=22.77 E-value=67 Score=25.79 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=19.9
Q ss_pred CceEEEEEEeeccccccccCC----CCceecc
Q 029857 108 TYKYFEVILVDAAHNAIRNDP----RINWICK 135 (186)
Q Consensus 108 ~yK~fEVIlvDp~h~aIr~Dp----~~~WI~~ 135 (186)
.-+.|=|||+||+-|.- .|| -+-||.-
T Consensus 86 ~~~~~~lvm~DpDaP~~-~~p~~~~~~HW~v~ 116 (220)
T 1wpx_B 86 DDDLFTLVMTDPDAPSK-TDHKWSEFCHLVEC 116 (220)
T ss_dssp SSCCEEEEEEESSSSCS-SCCTTCSEEEEEEE
T ss_pred CCceEEEEEECCCCCCC-CCCCcCcEEEEEEE
Confidence 35899999999999954 444 3567664
No 35
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=22.25 E-value=42 Score=25.78 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=14.8
Q ss_pred eeeeecccCCCceEEEEEEeeccc
Q 029857 98 LNSYWINEDSTYKYFEVILVDAAH 121 (186)
Q Consensus 98 LNSYwV~eD~~yK~fEVIlvDp~h 121 (186)
-|+|-|..++ ++|||||--
T Consensus 48 ~n~~li~~~~-----~~iLID~G~ 66 (243)
T 4hl2_A 48 SNGLIVRDGG-----RVLVVDTAW 66 (243)
T ss_dssp EEEEEEEETT-----EEEEESCCS
T ss_pred ceEEEEEECC-----cEEEEECCC
Confidence 4888887664 799999973
No 36
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=21.71 E-value=47 Score=25.86 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=14.9
Q ss_pred eeeecccCCCce-EEEEEEeeccc
Q 029857 99 NSYWINEDSTYK-YFEVILVDAAH 121 (186)
Q Consensus 99 NSYwV~eD~~yK-~fEVIlvDp~h 121 (186)
..-|..+||.-. .+|||.|+|.+
T Consensus 85 ~r~~~dkdG~kr~~teVi~v~~~~ 108 (148)
T 3k7u_C 85 LSPQLEPSCNKHFYFPYIQVQPPH 108 (148)
T ss_dssp ECCCSCCC-----CCEEEEECTTT
T ss_pred eeeeECCCCCEEEEEEEEEEecCC
Confidence 456888998754 57999999854
No 37
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=21.65 E-value=36 Score=29.35 Aligned_cols=27 Identities=37% Similarity=0.780 Sum_probs=21.0
Q ss_pred eEEEEEEeecc---ccccccCCCCceeccC
Q 029857 110 KYFEVILVDAA---HNAIRNDPRINWICKP 136 (186)
Q Consensus 110 K~fEVIlvDp~---h~aIr~Dp~~~WI~~~ 136 (186)
.-|.+||+||- ...++++|++.|.-++
T Consensus 314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~ 343 (429)
T 1sqg_A 314 QQFDRILLDAPCSATGVIRRHPDIKWLRRD 343 (429)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCT
T ss_pred CCCCEEEEeCCCCcccccCCCcchhhcCCH
Confidence 35999999994 3578899999886543
No 38
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A
Probab=21.13 E-value=93 Score=23.64 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=14.0
Q ss_pred CCceeeeeeecccCCCceEEEEEEe
Q 029857 93 GGLKVLNSYWINEDSTYKYFEVILV 117 (186)
Q Consensus 93 ~nLrVLNSYwV~eD~~yK~fEVIlv 117 (186)
++|.|.|+.+..+||.-...++++.
T Consensus 62 g~l~V~~~~~~~~~g~c~~~~~~a~ 86 (190)
T 3s26_A 62 NSYNVTSILVRDQDQGCRYWIRTFV 86 (190)
T ss_dssp SCEEEEEEEEC----CEEEEEEEEE
T ss_pred CcEEEEEEEEeCCCCcceEEEEEEE
Confidence 5788888888776565555555544
No 39
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=21.12 E-value=46 Score=25.19 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=15.4
Q ss_pred eeeeeecccCCCceEEEEEEeeccc
Q 029857 97 VLNSYWINEDSTYKYFEVILVDAAH 121 (186)
Q Consensus 97 VLNSYwV~eD~~yK~fEVIlvDp~h 121 (186)
--|+|.|..++ ++|||||--
T Consensus 26 ~~n~~li~~~~-----~~iLiD~G~ 45 (223)
T 1m2x_A 26 AANAVYLVTDK-----GVVVIDCPW 45 (223)
T ss_dssp EEEEEEEEETT-----EEEEESCCS
T ss_pred cccEEEEEeCC-----EEEEEeCCC
Confidence 36889887654 689999974
No 40
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus}
Probab=21.11 E-value=81 Score=23.67 Aligned_cols=10 Identities=0% Similarity=0.132 Sum_probs=5.9
Q ss_pred EEEEEeeccc
Q 029857 112 FEVILVDAAH 121 (186)
Q Consensus 112 fEVIlvDp~h 121 (186)
++|+++|.+-
T Consensus 101 ~~v~vldtDY 110 (184)
T 2l5p_A 101 ENIQVIETDY 110 (184)
T ss_dssp EEEEEEEEET
T ss_pred eEEEEEecCC
Confidence 4666666654
No 41
>2q8t_A CCL14; common CC chemokine fold, cytokine; 2.23A {Homo sapiens}
Probab=21.02 E-value=40 Score=22.98 Aligned_cols=40 Identities=10% Similarity=0.330 Sum_probs=32.7
Q ss_pred ceeeeeeecccCCCceEEEEEEeeccccccccCCCCceecc
Q 029857 95 LKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICK 135 (186)
Q Consensus 95 LrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~ 135 (186)
++.+-||.+ .++.=.--|||+.--....|--||+-.|+-+
T Consensus 27 ~~~I~~y~~-t~~~C~~~aVIf~tk~g~~vCadP~~~WVq~ 66 (74)
T 2q8t_A 27 RQRIMDYYE-TNSQCSKPGIVFITKRGHSVCTNPSDKWVQD 66 (74)
T ss_dssp GGGEEEEEE-CCTTSSSCCEEEEETTSCEEEECTTSHHHHH
T ss_pred hHHeeEEEE-CCCCCCCceEEEEecCCCEEeCCCChHHHHH
Confidence 566788888 5666666899999998889999999999864
No 42
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=21.00 E-value=72 Score=25.57 Aligned_cols=30 Identities=20% Similarity=0.470 Sum_probs=25.2
Q ss_pred CCceeeeeeecccCCCceEEEEEEeeccccc
Q 029857 93 GGLKVLNSYWINEDSTYKYFEVILVDAAHNA 123 (186)
Q Consensus 93 ~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~a 123 (186)
+.++.+.=.|+-- ..|-||=.|+|||.+|.
T Consensus 35 ~~~~pgdlVWAK~-~GyPwwPa~Iidp~~p~ 64 (158)
T 3pfs_A 35 GDLEPLELVWAKC-RGYPSYPALIIDPKMPR 64 (158)
T ss_dssp SCCCTTCEEEEEC-TTSCEEEEEEECTTSCT
T ss_pred CCCCCCCEEEEec-CCCCCCCEEEcCCCCcc
Confidence 4577777788887 78999999999999975
No 43
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=20.66 E-value=38 Score=26.60 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=7.7
Q ss_pred EEEEEeecc
Q 029857 112 FEVILVDAA 120 (186)
Q Consensus 112 fEVIlvDp~ 120 (186)
||||+||=.
T Consensus 47 ~EiIVVDn~ 55 (249)
T 2nxv_A 47 AEFLAADNR 55 (249)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEECC
Confidence 999999953
No 44
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=20.39 E-value=55 Score=27.76 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=30.2
Q ss_pred HhhhccCCceeeeeeecccCCCceEEEEEEe-eccccccccCCCCceecc
Q 029857 87 RAGRKLGGLKVLNSYWINEDSTYKYFEVILV-DAAHNAIRNDPRINWICK 135 (186)
Q Consensus 87 R~grk~~nLrVLNSYwV~eD~~yK~fEVIlv-Dp~h~aIr~Dp~~~WI~~ 135 (186)
...+.+|+++| .+| +|....=+|+|++ .+.-..|.. |++.||+.
T Consensus 21 ~l~~~~p~~~~--~~~--~~~~~~~ad~~i~~~~~~~~l~~-~~Lk~I~~ 65 (315)
T 3pp8_A 21 ALEKALPHARV--REW--KVGDNNPADYALVWQPPVEMLAG-RRLKAVFV 65 (315)
T ss_dssp HHHHHSTTEEE--EEC--CTTCCSCCSEEEESSCCHHHHTT-CCCSEEEE
T ss_pred HHHHHCCCCEE--Eec--CCCCccCcEEEEECCCCHHHhCC-CCceEEEE
Confidence 44677999998 355 3334456888887 333445677 99999985
No 45
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=20.23 E-value=88 Score=21.75 Aligned_cols=29 Identities=24% Similarity=0.527 Sum_probs=24.0
Q ss_pred eCCCCchhHHhhcCCccccceEEEEEEeeecC
Q 029857 21 VTRPTRPDKARRLGYKAKQGYVVYRVRVRRGG 52 (186)
Q Consensus 21 ~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGg 52 (186)
...|.-|..|++.|. +|.|++++.|..-|
T Consensus 24 ~~~~~YP~~A~~~~~---eG~V~v~f~I~~~G 52 (106)
T 2k9k_A 24 RVEPVYPSRALKRGV---EGFVTLSFTIDTTG 52 (106)
T ss_dssp CSSCCCCSHHHHHCC---CCEEEEEEEEETTT
T ss_pred cCCCCCCHHHHHcCC---eeEEEEEEEECCCC
Confidence 457888999998875 79999999998664
No 46
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A
Probab=20.12 E-value=51 Score=24.71 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=14.7
Q ss_pred eeeeecccCCCceEEEEEEeeccc
Q 029857 98 LNSYWINEDSTYKYFEVILVDAAH 121 (186)
Q Consensus 98 LNSYwV~eD~~yK~fEVIlvDp~h 121 (186)
-|+|-|..++ ++|||||--
T Consensus 13 ~n~~li~~~~-----~~iliD~G~ 31 (207)
T 2zwr_A 13 ENAYLVETGE-----GPVLIDPGD 31 (207)
T ss_dssp EEEEEEEETT-----EEEEECCCS
T ss_pred cEEEEEEeCC-----cEEEEeCCC
Confidence 5888887653 689999973
No 47
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=20.10 E-value=48 Score=28.91 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=20.7
Q ss_pred eEEEEEEeeccc-----cccccCCCCceecc
Q 029857 110 KYFEVILVDAAH-----NAIRNDPRINWICK 135 (186)
Q Consensus 110 K~fEVIlvDp~h-----~aIr~Dp~~~WI~~ 135 (186)
..|..||||+-. -.++.||++.|-..
T Consensus 222 ~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~ 252 (359)
T 4fzv_A 222 DTYDRVLVDVPCTTDRHSLHEEENNIFKRSR 252 (359)
T ss_dssp TCEEEEEEECCCCCHHHHTTCCTTCTTSGGG
T ss_pred ccCCEEEECCccCCCCCcccccChhhhhhCC
Confidence 469999999985 56789999988543
Done!