Query 029859
Match_columns 186
No_of_seqs 114 out of 340
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:47:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1664 Vacuolar H+-ATPase V1 100.0 1.9E-56 4E-61 369.0 23.2 177 1-178 1-177 (220)
2 PF01991 vATP-synt_E: ATP synt 99.9 1.2E-21 2.6E-26 159.1 12.2 157 16-173 1-157 (198)
3 PRK03963 V-type ATP synthase s 99.8 9E-18 1.9E-22 137.9 22.5 150 10-167 4-153 (198)
4 PRK01194 V-type ATP synthase s 99.8 4.1E-18 8.9E-23 140.2 18.4 129 10-144 3-135 (185)
5 COG1390 NtpE Archaeal/vacuolar 99.8 1.3E-17 2.7E-22 138.5 19.9 138 9-148 3-140 (194)
6 PRK02292 V-type ATP synthase s 99.7 5.3E-15 1.2E-19 120.8 18.6 130 10-149 3-136 (188)
7 PRK01558 V-type ATP synthase s 99.2 4.1E-09 8.8E-14 87.6 20.6 137 3-147 2-138 (198)
8 PRK01005 V-type ATP synthase s 98.6 3.6E-06 7.8E-11 70.8 17.1 115 3-125 7-122 (207)
9 PF06188 HrpE: HrpE/YscL/FliH 98.1 0.0002 4.3E-09 59.4 15.8 138 14-176 32-169 (191)
10 PRK09098 type III secretion sy 98.0 0.0035 7.7E-08 53.5 21.3 145 6-175 44-193 (233)
11 TIGR02499 HrpE_YscL_not type I 98.0 0.00089 1.9E-08 52.9 16.6 121 14-150 15-136 (166)
12 PRK06937 type III secretion sy 97.9 0.0018 4E-08 53.7 17.3 137 16-175 34-173 (204)
13 TIGR03825 FliH_bacil flagellar 97.8 0.0095 2.1E-07 51.2 20.7 66 84-153 134-201 (255)
14 PRK06328 type III secretion sy 97.6 0.011 2.4E-07 50.1 18.0 140 16-175 33-174 (223)
15 PRK08475 F0F1 ATP synthase sub 97.3 0.01 2.2E-07 48.1 12.7 88 12-115 77-164 (167)
16 PRK06669 fliH flagellar assemb 97.2 0.12 2.5E-06 44.9 21.5 84 84-175 164-248 (281)
17 COG1317 FliH Flagellar biosynt 96.4 0.51 1.1E-05 40.4 20.3 137 3-153 39-183 (234)
18 PF06635 NolV: Nodulation prot 95.5 1.3 2.8E-05 37.6 17.2 138 17-176 35-173 (207)
19 TIGR03825 FliH_bacil flagellar 94.3 2.9 6.2E-05 35.8 14.7 39 110-153 134-172 (255)
20 TIGR03321 alt_F1F0_F0_B altern 94.0 3.5 7.6E-05 35.1 18.5 92 15-118 63-154 (246)
21 PRK13386 fliH flagellar assemb 93.9 2.8 6.1E-05 35.8 13.6 61 84-148 120-183 (236)
22 PRK07352 F0F1 ATP synthase sub 93.7 3 6.6E-05 33.6 14.3 92 15-118 77-168 (174)
23 PRK08404 V-type ATP synthase s 93.3 2.7 5.8E-05 31.5 11.4 61 17-77 18-78 (103)
24 PRK06231 F0F1 ATP synthase sub 92.8 5.1 0.00011 33.5 14.3 93 14-118 105-197 (205)
25 CHL00019 atpF ATP synthase CF0 92.7 4.7 0.0001 32.8 16.4 92 15-118 82-173 (184)
26 PRK13428 F0F1 ATP synthase sub 92.4 9.4 0.0002 35.6 15.9 107 14-132 58-164 (445)
27 PRK03963 V-type ATP synthase s 92.4 5.1 0.00011 32.6 15.3 97 5-101 10-118 (198)
28 PRK01194 V-type ATP synthase s 91.3 7.2 0.00016 32.0 13.3 96 5-100 9-117 (185)
29 PRK13460 F0F1 ATP synthase sub 90.6 7.8 0.00017 31.2 14.3 92 15-118 74-165 (173)
30 PRK14475 F0F1 ATP synthase sub 90.5 7.9 0.00017 31.0 12.8 29 18-46 71-99 (167)
31 PF03179 V-ATPase_G: Vacuolar 90.2 6 0.00013 29.2 11.4 92 19-122 10-101 (105)
32 PRK14473 F0F1 ATP synthase sub 88.2 11 0.00025 29.8 15.7 93 14-118 65-157 (164)
33 PRK14474 F0F1 ATP synthase sub 88.2 16 0.00035 31.4 16.6 89 18-118 66-154 (250)
34 TIGR02926 AhaH ATP synthase ar 88.2 7.7 0.00017 27.7 9.7 18 20-37 17-34 (85)
35 PRK14472 F0F1 ATP synthase sub 87.3 14 0.0003 29.8 14.2 51 15-65 76-126 (175)
36 PRK07353 F0F1 ATP synthase sub 86.7 10 0.00022 29.0 9.7 39 15-53 63-101 (140)
37 PRK13461 F0F1 ATP synthase sub 86.5 14 0.00031 29.1 14.3 93 15-119 63-155 (159)
38 CHL00118 atpG ATP synthase CF0 86.5 10 0.00022 30.1 9.7 51 15-65 80-130 (156)
39 PRK12704 phosphodiesterase; Pr 86.1 32 0.0007 32.8 16.8 30 77-106 121-150 (520)
40 PF02108 FliH: Flagellar assem 85.0 13 0.00029 27.4 12.7 64 84-151 25-91 (128)
41 PRK05687 fliH flagellar assemb 85.0 22 0.00049 30.0 15.8 59 85-147 134-195 (246)
42 PRK01558 V-type ATP synthase s 84.4 22 0.00047 29.4 13.6 42 7-52 17-58 (198)
43 PRK14471 F0F1 ATP synthase sub 82.6 22 0.00048 28.1 15.8 94 14-118 65-158 (164)
44 PRK00106 hypothetical protein; 82.2 49 0.0011 31.8 16.8 44 77-120 136-181 (535)
45 COG0711 AtpF F0F1-type ATP syn 81.8 25 0.00054 28.1 12.4 59 16-78 65-123 (161)
46 PRK05759 F0F1 ATP synthase sub 81.4 23 0.0005 27.5 15.7 93 14-118 61-153 (156)
47 PRK00106 hypothetical protein; 81.0 55 0.0012 31.5 18.3 18 19-36 49-66 (535)
48 TIGR01144 ATP_synt_b ATP synth 80.9 23 0.00051 27.3 13.8 51 14-64 52-102 (147)
49 PRK13455 F0F1 ATP synthase sub 80.6 29 0.00062 28.1 14.6 35 18-52 88-122 (184)
50 PF00430 ATP-synt_B: ATP synth 80.3 22 0.00047 26.5 9.1 39 15-53 57-95 (132)
51 COG1390 NtpE Archaeal/vacuolar 79.7 34 0.00075 28.5 13.4 115 20-153 3-117 (194)
52 PRK13453 F0F1 ATP synthase sub 79.1 32 0.00069 27.7 14.1 50 16-65 77-126 (173)
53 PRK08404 V-type ATP synthase s 78.6 25 0.00055 26.2 13.6 69 20-96 10-78 (103)
54 PRK01005 V-type ATP synthase s 77.7 41 0.0009 28.3 18.5 55 8-66 23-77 (207)
55 PF12072 DUF3552: Domain of un 77.2 40 0.00087 27.9 14.6 44 78-121 118-163 (201)
56 PRK06568 F0F1 ATP synthase sub 76.7 38 0.00082 27.3 9.7 22 16-37 63-84 (154)
57 COG2811 NtpF Archaeal/vacuolar 74.1 38 0.00081 26.0 11.5 36 17-52 33-68 (108)
58 PRK13454 F0F1 ATP synthase sub 74.0 47 0.001 27.0 11.2 31 16-46 90-120 (181)
59 PF01991 vATP-synt_E: ATP synt 73.2 45 0.00098 26.5 13.3 54 11-64 7-60 (198)
60 TIGR03319 YmdA_YtgF conserved 73.1 88 0.0019 29.8 16.7 33 88-120 126-160 (514)
61 PRK06669 fliH flagellar assemb 72.9 61 0.0013 27.9 13.3 51 110-168 164-214 (281)
62 TIGR02926 AhaH ATP synthase ar 72.3 32 0.0007 24.5 11.5 39 15-53 23-61 (85)
63 TIGR03321 alt_F1F0_F0_B altern 72.1 61 0.0013 27.5 16.8 94 5-106 68-163 (246)
64 PRK09174 F0F1 ATP synthase sub 70.5 62 0.0014 27.0 13.1 31 15-45 111-141 (204)
65 PRK13460 F0F1 ATP synthase sub 65.2 70 0.0015 25.6 13.3 40 10-53 84-123 (173)
66 PRK14474 F0F1 ATP synthase sub 65.1 90 0.0019 26.8 15.1 94 5-106 68-163 (250)
67 PRK09173 F0F1 ATP synthase sub 64.9 66 0.0014 25.2 14.6 20 74-93 100-119 (159)
68 PRK15354 type III secretion sy 64.2 93 0.002 26.7 16.2 120 15-146 44-171 (224)
69 PF12072 DUF3552: Domain of un 62.6 88 0.0019 25.8 18.3 88 16-103 27-122 (201)
70 PHA03065 Hypothetical protein; 61.0 1.5E+02 0.0032 28.0 12.0 83 80-169 111-198 (438)
71 PRK13453 F0F1 ATP synthase sub 60.6 87 0.0019 25.1 13.1 50 42-95 88-137 (173)
72 TIGR03319 YmdA_YtgF conserved 58.8 1.7E+02 0.0037 27.9 18.3 45 84-128 149-198 (514)
73 PRK02292 V-type ATP synthase s 58.3 96 0.0021 24.9 14.8 85 12-96 16-112 (188)
74 PRK08475 F0F1 ATP synthase sub 57.6 98 0.0021 24.8 11.9 54 42-99 92-145 (167)
75 PRK06032 fliH flagellar assemb 55.6 1.2E+02 0.0025 25.0 18.1 58 113-175 112-170 (199)
76 PRK12705 hypothetical protein; 55.2 2E+02 0.0043 27.6 17.3 24 80-103 112-135 (508)
77 PRK13455 F0F1 ATP synthase sub 54.4 1.1E+02 0.0025 24.6 13.5 55 37-95 92-146 (184)
78 PRK09098 type III secretion sy 53.2 1.4E+02 0.0031 25.4 13.2 46 9-58 36-81 (233)
79 PRK09173 F0F1 ATP synthase sub 50.6 1.2E+02 0.0026 23.7 13.7 92 17-120 62-153 (159)
80 PRK13454 F0F1 ATP synthase sub 48.8 1.4E+02 0.0031 24.1 11.5 11 138-148 167-177 (181)
81 PRK14471 F0F1 ATP synthase sub 47.1 1.4E+02 0.003 23.5 13.0 53 42-98 78-130 (164)
82 PRK08476 F0F1 ATP synthase sub 46.6 1.4E+02 0.003 23.2 12.8 48 16-63 66-113 (141)
83 PF00430 ATP-synt_B: ATP synth 46.0 1.2E+02 0.0026 22.4 9.3 50 42-95 69-118 (132)
84 CHL00118 atpG ATP synthase CF0 45.4 1.5E+02 0.0032 23.3 11.0 51 42-96 92-142 (156)
85 PRK14472 F0F1 ATP synthase sub 44.4 1.6E+02 0.0035 23.5 13.6 22 42-63 88-109 (175)
86 PRK07353 F0F1 ATP synthase sub 44.0 1.4E+02 0.0031 22.6 11.5 51 42-96 75-125 (140)
87 PF00038 Filament: Intermediat 43.7 1.9E+02 0.004 24.9 8.7 113 40-158 178-290 (312)
88 PF10669 Phage_Gp23: Protein g 43.6 1.2E+02 0.0027 23.1 6.4 42 47-90 51-92 (121)
89 CHL00019 atpF ATP synthase CF0 43.2 1.8E+02 0.0038 23.5 13.8 24 73-96 121-144 (184)
90 TIGR01147 V_ATP_synt_G vacuola 43.2 1.5E+02 0.0033 22.7 10.9 93 20-126 13-107 (113)
91 PF04716 ETC_C1_NDUFA5: ETC co 41.3 1.1E+02 0.0024 20.6 5.9 51 87-146 5-55 (57)
92 PF04867 DUF643: Protein of un 37.8 1.8E+02 0.004 22.2 8.5 66 42-107 10-76 (114)
93 PRK06568 F0F1 ATP synthase sub 33.2 2.6E+02 0.0056 22.5 11.0 23 74-96 102-124 (154)
94 PF08740 BCS1_N: BCS1 N termin 32.7 87 0.0019 24.9 4.5 33 127-159 127-159 (187)
95 PF04599 Pox_G5: Poxvirus G5 p 32.6 4.3E+02 0.0094 24.9 12.6 84 80-170 109-197 (425)
96 COG0711 AtpF F0F1-type ATP syn 31.9 2.6E+02 0.0057 22.2 13.7 38 12-53 76-113 (161)
97 PRK13461 F0F1 ATP synthase sub 31.2 2.5E+02 0.0055 21.8 13.2 51 42-96 75-125 (159)
98 PF12685 SpoIIIAH: SpoIIIAH-li 31.1 2.9E+02 0.0064 22.5 8.7 91 73-166 87-195 (196)
99 COG2811 NtpF Archaeal/vacuolar 31.0 2.4E+02 0.0053 21.6 15.0 86 1-102 3-88 (108)
100 PRK06397 V-type ATP synthase s 29.6 2.6E+02 0.0056 21.3 6.3 32 15-46 34-65 (111)
101 KOG2880 SMAD6 interacting prot 29.5 3.9E+02 0.0086 24.9 8.5 44 9-52 81-124 (424)
102 PRK08476 F0F1 ATP synthase sub 28.6 2.8E+02 0.0061 21.5 10.9 64 24-95 63-126 (141)
103 PRK06418 transcription elongat 28.2 63 0.0014 26.5 3.0 57 109-166 101-165 (166)
104 PRK12705 hypothetical protein; 27.8 5.5E+02 0.012 24.7 15.7 29 15-43 51-79 (508)
105 TIGR01144 ATP_synt_b ATP synth 26.0 3E+02 0.0065 21.0 12.8 50 40-93 63-112 (147)
106 PHA02571 a-gt.4 hypothetical p 25.8 2.6E+02 0.0055 21.5 5.7 36 2-37 12-47 (109)
107 PRK15322 invasion protein OrgB 24.6 4.5E+02 0.0097 22.5 14.2 97 13-128 13-109 (210)
108 PRK09174 F0F1 ATP synthase sub 24.5 4.1E+02 0.009 22.1 14.4 22 44-65 99-120 (204)
109 PF10557 Cullin_Nedd8: Cullin 24.5 58 0.0013 22.1 1.9 58 70-127 5-64 (68)
110 TIGR02499 HrpE_YscL_not type I 24.3 3.3E+02 0.0072 20.9 14.5 112 21-168 11-122 (166)
111 PRK14473 F0F1 ATP synthase sub 23.3 3.7E+02 0.008 21.0 14.6 32 114-148 128-159 (164)
112 PF08112 ATP-synt_E_2: ATP syn 21.2 2.7E+02 0.0059 18.8 7.5 41 9-53 8-48 (56)
No 1
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=100.00 E-value=1.9e-56 Score=368.97 Aligned_cols=177 Identities=55% Similarity=0.797 Sum_probs=174.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q 029859 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (186)
Q Consensus 1 m~d~ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~ 80 (186)
|||++|++||+||++||+|||+|||+||.++|+|||||||++||++++.+|+..|++|+||++++++|+.|+.+|++||+
T Consensus 1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK 80 (220)
T KOG1664|consen 1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK 80 (220)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029859 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH 160 (186)
Q Consensus 81 ~L~aRe~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~ 160 (186)
+|++|+++|+.+|++|+++|..++.|++.|+.+|++||+|||++|+||.|+||||+.|+.+|++++++|..+|...+|..
T Consensus 81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~~ 160 (220)
T KOG1664|consen 81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGVG 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCeEeeccCCCCCCCCCC
Q 029859 161 PPEIIVDHHIYLPPGPGH 178 (186)
Q Consensus 161 ~~~i~id~~~~L~~~~~~ 178 (186)
+.+.+|++.|||++..+
T Consensus 161 -~e~~id~~~fL~~~~~G 177 (220)
T KOG1664|consen 161 -VEVQIDKKDFLPPDVAG 177 (220)
T ss_pred -ceeeechhccCCccccC
Confidence 89999999999997644
No 2
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=99.87 E-value=1.2e-21 Score=159.10 Aligned_cols=157 Identities=32% Similarity=0.404 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (186)
Q Consensus 16 FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~ 95 (186)
||.++|+.+|++|..+|+++++-.+.....+....+...+++..++++..+....|...+.+|..+|.+|+++|+++|+.
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~ 80 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE 80 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccCCCCC
Q 029859 96 ASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP 173 (186)
Q Consensus 96 a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~ 173 (186)
++++|..++.+++.|+.+|.+||.+++..+.+++++|+|++.|.++|+++++.+...|....|..++.+..|+ .||+
T Consensus 81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~ 157 (198)
T PF01991_consen 81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DYLI 157 (198)
T ss_dssp HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T----B
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-cccC
Confidence 9999999998877899999999999999999999999999999999999999999999887776644455554 4553
No 3
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=99.82 E-value=9e-18 Score=137.92 Aligned_cols=150 Identities=25% Similarity=0.314 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 029859 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (186)
Q Consensus 10 i~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i 89 (186)
+..++.-|..+|+.+|++|...|..+.+-.......+........-++...++++.++...|+..+++|+++|.+|++++
T Consensus 4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~ 83 (198)
T PRK03963 4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELI 83 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999984444444444444445557777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeec
Q 029859 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD 167 (186)
Q Consensus 90 ~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id 167 (186)
+.+|+.|+++|.+++.+ .|+.+|.+||.+|+..|++++++|+|++.|..+|++.++.+.+. +| . +++.++
T Consensus 84 ~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~~----~~-~-~~i~~~ 153 (198)
T PRK03963 84 SEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRDE----LG-D-VEIELG 153 (198)
T ss_pred HHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHHH----hC-C-eEEEEC
Confidence 99999999999999877 89999999999999999999999999999999999998877644 44 2 466665
No 4
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=99.80 E-value=4.1e-18 Score=140.15 Aligned_cols=129 Identities=15% Similarity=0.303 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 029859 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKI---RQEY-ERKEKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (186)
Q Consensus 10 i~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI---~~~~-ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aR 85 (186)
+..++.-|.++|+.+|++|...|+.+.+ .|+.....+. ...| ++..++++..++...|+..-.+|+++|++|
T Consensus 3 le~i~~~I~~ea~~~a~~I~~eA~~~ae----ei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~ar 78 (185)
T PRK01194 3 LEDVIKDIEKSREEKKKEINDEYSKRIE----KLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKR 78 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5678889999999999999999999988 7777755554 4444 455567777777788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHH
Q 029859 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVES 144 (186)
Q Consensus 86 e~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~ 144 (186)
+++|+++|+.|+++|.++++++ .|+++|++||.+|+.. ++|+++|+||+.|..+|++
T Consensus 79 ee~I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~-l~~~~~v~~~~~D~~~i~~ 135 (185)
T PRK01194 79 REILKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKT-LGEDCIIKVSESDKKKINN 135 (185)
T ss_pred HHHHHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHh-cCCCeEEEEcHHhHHHHHh
Confidence 9999999999999999999766 8999999999999999 7799999999999999976
No 5
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=99.80 E-value=1.3e-17 Score=138.54 Aligned_cols=138 Identities=26% Similarity=0.411 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 029859 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL 88 (186)
Q Consensus 9 qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~ 88 (186)
.+..|++||.++|+++|++|...|.++++..+.+.+......+...+.+.++++++.++...|++.+++|..+|.+++++
T Consensus 3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~ 82 (194)
T COG1390 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEI 82 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHH
Q 029859 89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLES 148 (186)
Q Consensus 89 i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~ 148 (186)
|+.+|+.+.++|..+++++. |.. |..|+.+++.++.+++++|++++.|.++|.+++.+
T Consensus 83 l~~~~~~~~e~L~~i~~~~~-~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~ 140 (194)
T COG1390 83 LESVFEAVEEKLRNIASDPE-YES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILRE 140 (194)
T ss_pred HHHHHHHHHHHHHcCcCCcc-hHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhh
Confidence 99999999999999999974 444 99999999999999999999999999998888776
No 6
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=99.68 E-value=5.3e-15 Score=120.83 Aligned_cols=130 Identities=25% Similarity=0.385 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 029859 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK---IRQEY-ERKEKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (186)
Q Consensus 10 i~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~k---I~~~~-ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aR 85 (186)
+..++.-|.++|+.+|++|...|+.+.. .++.+...+ |...+ .+-.+++..-.+...|...+.+|..+|.+|
T Consensus 3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~----~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r 78 (188)
T PRK02292 3 LETVVEDIRDEARARASEIRAEADEEAE----EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR 78 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999988 888887766 44444 344445555577889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHH
Q 029859 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESA 149 (186)
Q Consensus 86 e~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~ 149 (186)
+++|+++|+.|+++|..++.+ .|..+|.+||.+| .+++++|+|++.|..+|++++..+
T Consensus 79 ~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~~ 136 (188)
T PRK02292 79 KEVLEDVRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSDY 136 (188)
T ss_pred HHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHhc
Confidence 999999999999999999876 8999999999999 678999999999999999988765
No 7
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=99.23 E-value=4.1e-09 Score=87.56 Aligned_cols=137 Identities=22% Similarity=0.245 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 029859 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL 82 (186)
Q Consensus 3 d~ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L 82 (186)
+++++.=+.+|..=|..+|+.+|.+|...|+++.+ +|+.+.+.+.....++-.++++..+++..|+.....|..+|
T Consensus 2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe----~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll 77 (198)
T PRK01558 2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEAE----EIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI 77 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999 99999999988888999999998899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHH
Q 029859 83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLE 147 (186)
Q Consensus 83 ~aRe~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~ 147 (186)
.+++.+++.+.+.+.+.+.... +++.|..++..|+.... .++++.|+.++.|...+...+.
T Consensus 78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~ 138 (198)
T PRK01558 78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILR 138 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHH
Confidence 9999999866555555556444 66789999999999864 6678999999999888877543
No 8
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=98.64 E-value=3.6e-06 Score=70.80 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 029859 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL 82 (186)
Q Consensus 3 d~ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L 82 (186)
++.++.=+++|..-|..+|+.+|.+|...|..+.+ .|+.+.+.+....-+.-.++++..++...|+..-.+|..+|
T Consensus 7 ~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l 82 (207)
T PRK01005 7 QDKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLE 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778899999999999999999999999998 79999999999989999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhc
Q 029859 83 QAQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRL 125 (186)
Q Consensus 83 ~aRe~~i~~l~~~a~~kL~~~-~~~~~~Y~~lLk~LI~qgl~~L 125 (186)
.++.++++.+|..+.++|..- ..|+ ++|..||+.-+-..
T Consensus 83 ~aKqevi~~vf~~a~~~lv~~~~~d~----~~l~~lI~~~v~~~ 122 (207)
T PRK01005 83 SLKQAVENKIFRESLGEWLEHVLTDP----EVSAKLIQALVQAI 122 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHH
Confidence 999999999999999999875 4465 67777777555444
No 9
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=98.15 E-value=0.0002 Score=59.43 Aligned_cols=138 Identities=22% Similarity=0.319 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (186)
Q Consensus 14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~ 93 (186)
-.-|...|+.+|+.|-..|+++++ .++.+....+.+.|-......- ...-..|-.....-.+....++
T Consensus 32 a~~IL~~A~~qA~~Il~~Ae~eAe----~l~~~a~e~a~~~~~q~a~~ll--------~~~~~~~e~l~~~l~~~~~~ll 99 (191)
T PF06188_consen 32 AREILEDARQQAEQILQQAEEEAE----ALLEQAYEQAEAQFWQQANALL--------QEWQQQREQLLQQLEEQAEELL 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999 8888777777666644332211 1111223455555677778888
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccCCCCC
Q 029859 94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP 173 (186)
Q Consensus 94 ~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~ 173 (186)
..|-.+|..-..++.++..+++.|..+ ...++.++++|...+.+-|...|.+-... ...+.-| ..|+
T Consensus 100 ~~al~~lL~e~~~~qrv~aLlr~l~~~---~~~~~~~tL~~hP~~~~~V~~~L~~~~~~--------~w~l~~D--~sl~ 166 (191)
T PF06188_consen 100 SQALERLLDETPDQQRVAALLRQLLAS---QRQESEATLRCHPDQLEEVAAWLAEHPAL--------HWQLQAD--ESLA 166 (191)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHh---cccccceEEEECHHHHHHHHHHHHhCCCc--------ceeeccC--CCCC
Confidence 888888888777777888888888755 35778999999999999998777663311 1344444 6677
Q ss_pred CCC
Q 029859 174 PGP 176 (186)
Q Consensus 174 ~~~ 176 (186)
++.
T Consensus 167 ~~~ 169 (191)
T PF06188_consen 167 PDQ 169 (191)
T ss_pred CCc
Confidence 775
No 10
>PRK09098 type III secretion system protein HrpB; Validated
Probab=98.01 E-value=0.0035 Score=53.54 Aligned_cols=145 Identities=18% Similarity=0.134 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHH-HhHHHHHHHHHHH
Q 029859 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR--KKIE-YSMQLNASRIKVL 82 (186)
Q Consensus 6 v~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~--k~I~-~S~~~n~~Rl~~L 82 (186)
+-.+-+..-.-|..+|++.|++|...|.++|+-.+. .-|.....+...+ .++. .....+..+ .
T Consensus 44 ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~-----------~Gy~eG~~~a~~e~~~~~~~~~~~~~~~~---~ 109 (233)
T PRK09098 44 VLAAARARAERIVAEARAQAEAILEAARREADRSAR-----------RGYAAGLRQALAEWHARGADHAFAERRAA---R 109 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 344445555566667777777777777777763332 2333333322222 1122 111222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcC--CCceEEeeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029859 83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH 160 (186)
Q Consensus 83 ~aRe~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~--e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~ 160 (186)
..++++++=++..+++-+... |+ ..|-..+.+++..+. .+.|+|++...|+++|...+...... .|..
T Consensus 110 ~~e~~Lv~lv~~~v~kiv~~~--d~----~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~----~g~~ 179 (233)
T PRK09098 110 RMRERLAEIVAAAVEQIVLGE--DR----AALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAA----GGRN 179 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CH----HHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHh----cCCC
Confidence 247788888888888777542 43 456678889998864 46899999999999999887776554 3332
Q ss_pred CCeEeeccCCCCCCC
Q 029859 161 PPEIIVDHHIYLPPG 175 (186)
Q Consensus 161 ~~~i~id~~~~L~~~ 175 (186)
..+.|-.+..|+++
T Consensus 180 -~~l~Iv~Dp~L~~G 193 (233)
T PRK09098 180 -VPVEVVGDPRLAPG 193 (233)
T ss_pred -cceEEEeCCCCCCC
Confidence 23333333556544
No 11
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=98.01 E-value=0.00089 Score=52.94 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (186)
Q Consensus 14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~ 93 (186)
-.-|..+|+.+|+.|...|+++++-.+..-.++....-..++....... ...+-+.+..=+.-+-.+.
T Consensus 15 A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~------------~~~~~~~~~~~e~~l~~l~ 82 (166)
T TIGR02499 15 AQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEW------------QQEAEQLEASLEERLAELV 82 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999986655444444333332222211111 1111111111122222333
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CceEEeeccccHHHHHHHHHHHH
Q 029859 94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAK 150 (186)
Q Consensus 94 ~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e-~~v~V~~rk~D~~lV~~~l~~~~ 150 (186)
-.+-+++..-. ....++..++.+++-.+.+ +.++|+|...|++.|...+.+..
T Consensus 83 ~~~~~kil~~~----~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~ 136 (166)
T TIGR02499 83 LQALEQILGEY----DEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERL 136 (166)
T ss_pred HHHHHHHhCCC----CCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHh
Confidence 33333333322 3457888888898888887 69999999999999998877654
No 12
>PRK06937 type III secretion system protein; Reviewed
Probab=97.90 E-value=0.0018 Score=53.74 Aligned_cols=137 Identities=17% Similarity=0.225 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR--KKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (186)
Q Consensus 16 FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~--k~I~~S~~~n~~Rl~~L~aRe~~i~~l~ 93 (186)
-|..+|++.|++|...|+++|+-.+ ..-|+....+...+ .++..+ ..+..--.-....++++=++
T Consensus 34 ~il~~A~~~A~~i~~~A~~~~e~~~-----------~~Gy~~G~~~a~~e~~e~l~~~--~~~~~~~~~~~e~~l~~Lvl 100 (204)
T PRK06937 34 ELVEAARQRAEEIEAEAQEVYEQQK-----------QLGYQAGLDEARTEQAELILET--VLQCQEFYRGVEQQMSEVVL 100 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999998433 23444333333322 223222 12222122344556666566
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccCCCC
Q 029859 94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 172 (186)
Q Consensus 94 ~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e-~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L 172 (186)
.-|++=|... + -..++..++.+++..+.+ +.|+|++.+.|++.|.+.++.....|. |...+.|..| ..|
T Consensus 101 ~ia~kil~~~--~---~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~---~~~~l~i~~D--~~L 170 (204)
T PRK06937 101 EAVRKILNDY--D---DVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFP---EVGYLEVVAD--ARL 170 (204)
T ss_pred HHHHHHHhcc--C---cHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCC---CCccEEEEeC--CCC
Confidence 6555555433 1 247888999999998876 599999999999999998877766553 2221344444 455
Q ss_pred CCC
Q 029859 173 PPG 175 (186)
Q Consensus 173 ~~~ 175 (186)
+++
T Consensus 171 ~~G 173 (204)
T PRK06937 171 DQG 173 (204)
T ss_pred CCC
Confidence 544
No 13
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=97.81 E-value=0.0095 Score=51.15 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC-CceEEeeccccHHHHHHHHHHHHHHH
Q 029859 84 AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEY 153 (186)
Q Consensus 84 aRe~~i~~l~~~a~~kL~~~-~~~~~~Y~~lLk~LI~qgl~~L~e-~~v~V~~rk~D~~lV~~~l~~~~~~y 153 (186)
.+.++++=++.-|++=|... ..++ ..+..||.+++-.+.+ +.|+|+|.+.|++.|....+.+...+
T Consensus 134 ~e~el~~La~~iAeKIi~~el~~~~----e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v~~~~~~l~~~~ 201 (255)
T TIGR03825 134 AQPLIIELACALAEKVIGVSLAEDK----NAFQALVRQVLSEVREFDEVSIYVHPHWYERVAAQKDELQSIL 201 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCH----HHHHHHHHHHHHhccCCCcEEEEECHHHHHHHHHhHHHHHhhc
Confidence 34555555566555555543 3443 5689999999999987 58999999999999998877666554
No 14
>PRK06328 type III secretion system protein; Validated
Probab=97.62 E-value=0.011 Score=50.10 Aligned_cols=140 Identities=17% Similarity=0.216 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (186)
Q Consensus 16 FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~ 95 (186)
-|...|++.|++|...|.++++ ++-++... +-|+....+.. ..+. ...+....-.-..+.++++=++.-
T Consensus 33 ~il~~a~~~ae~i~~ea~~e~E----~i~eeA~~---eGy~eG~~~~~--~~~~--~l~~~~~~~~~~~e~~lv~Lal~i 101 (223)
T PRK06328 33 ELLEKTKEDSEAYTQETHEECE----KLREEAKN---QGFKEGSKAWS--KQLA--FLEEETQKLREQVKEALVPLAIAS 101 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888887 55544432 33444443321 1111 112222111123345677767777
Q ss_pred HHHHHHh-hccChhHHHHHHHHHHHHHHHhcCCC-ceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccCCCCC
Q 029859 96 ASKEVLN-VSRDHNSYKKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP 173 (186)
Q Consensus 96 a~~kL~~-~~~~~~~Y~~lLk~LI~qgl~~L~e~-~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~ 173 (186)
|++=+.. +..|+ ..+..+|.+||-.+.+. .|+|+|...|+++|+...++....+... ..+.|..| ..|+
T Consensus 102 a~kVi~~el~~d~----e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~~---~~~~I~~D--~~L~ 172 (223)
T PRK06328 102 VKKIIGKELELHP----ETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYA---DSLIISPK--ADVT 172 (223)
T ss_pred HHHHHHHHHhhCH----HHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccCC---CceEEEeC--CCCC
Confidence 7666654 33343 67779999999888764 8999999999999998776665554322 22345444 5565
Q ss_pred CC
Q 029859 174 PG 175 (186)
Q Consensus 174 ~~ 175 (186)
++
T Consensus 173 ~G 174 (223)
T PRK06328 173 PG 174 (223)
T ss_pred CC
Confidence 54
No 15
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=97.25 E-value=0.01 Score=48.06 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 029859 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN 91 (186)
Q Consensus 12 kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~ 91 (186)
.=..-+..+|+.+|.+|...|..+.+.++..++.+.+.......++....++. +.+.-+...|.+++++
T Consensus 77 ~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~-----------Ek~~a~~elk~eii~~ 145 (167)
T PRK08475 77 EDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEF-----------EVRKMEREVVEEVLNE 145 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 33456778899999999999999999888888888877777655555555444 4444577889999999
Q ss_pred HHHHHHHHHHhhccChhHHHHHHH
Q 029859 92 MMEAASKEVLNVSRDHNSYKKLLK 115 (186)
Q Consensus 92 l~~~a~~kL~~~~~~~~~Y~~lLk 115 (186)
+|+. +|.+++.+ .|-.++.
T Consensus 146 ~~~~---~~~~l~~~--~y~~~~~ 164 (167)
T PRK08475 146 LFES---KKVSLNQQ--EYVNILL 164 (167)
T ss_pred HHHh---hhcCCCHH--HHHHHHh
Confidence 9999 77777654 7988774
No 16
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=97.24 E-value=0.12 Score=44.92 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCC
Q 029859 84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP 162 (186)
Q Consensus 84 aRe~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e-~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~ 162 (186)
...++++-++.-|++=|..+..+ .+.++..||.+++-.+.+ +.|+|++...|+++++..+++....+... ..+
T Consensus 164 ~e~elv~Lal~iaekvi~~~~~~---~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~l~~~---~~i 237 (281)
T PRK06669 164 SEEEIVELALDIAKKVIKEISEN---SKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISLLDNE---EHL 237 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHhcCCC---CCe
Confidence 55667777777777666444433 457889999999999877 58999999999999999877777665322 224
Q ss_pred eEeeccCCCCCCC
Q 029859 163 EIIVDHHIYLPPG 175 (186)
Q Consensus 163 ~i~id~~~~L~~~ 175 (186)
.|..| ..|+++
T Consensus 238 ~I~~D--~~l~~G 248 (281)
T PRK06669 238 KIYED--DAISKG 248 (281)
T ss_pred EEEEC--CCCCCC
Confidence 55555 455553
No 17
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.43 E-value=0.51 Score=40.39 Aligned_cols=137 Identities=14% Similarity=0.144 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHhHHHHHHHH-
Q 029859 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK--IEYSMQLNASRI- 79 (186)
Q Consensus 3 d~ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~--I~~S~~~n~~Rl- 79 (186)
+++....+.++..++...+.+.++.|...+++-|+ ..++..... ..++.....+ -..++.++....
T Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~e----eg~q~G~~e-------G~~~g~~~~~~~e~~~~li~~~~~~ 107 (234)
T COG1317 39 EEELEQALEAKEEELESAAQELQEGIEEGAREGYE----EGFQLGYEE-------GFEEGQEEGRVLERLAKLIAEFQAE 107 (234)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999999988 554444433 2222221110 111222222221
Q ss_pred -HHH--HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCC--ceEEeeccccHHHHHHHHHHHHHHH
Q 029859 80 -KVL--QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP--AVLLRCRKDDHHLVESVLESAKEEY 153 (186)
Q Consensus 80 -~~L--~aRe~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~--~v~V~~rk~D~~lV~~~l~~~~~~y 153 (186)
.-| ....++++-++.-|++=|...... -+..|-.+|.++|..+... .++++|...|++.|+..++......
T Consensus 108 ~~~~~~~~e~qLv~lvl~ia~~Vi~~~~~~---~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~~~~ 183 (234)
T COG1317 108 LEALKEVVEKQLVQLVLEIARKVIGKELEL---DPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEELSLL 183 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhc---CHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHHhhc
Confidence 111 234566666677676666654433 3478999999999887654 7999999999999999988655543
No 18
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=95.53 E-value=1.3 Score=37.55 Aligned_cols=138 Identities=17% Similarity=0.174 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (186)
Q Consensus 17 I~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a 96 (186)
+...|+.-|..|...|...|+-++.+=.+.....= -.++-+.|...+.--..++..|. .++.+=+++-+
T Consensus 35 ~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g---------~e~~A~llaqa~a~v~r~~a~LE--~~l~~LVl~~V 103 (207)
T PF06635_consen 35 FLAAARREAQRIREWARAAYERERARGYEEGRRAG---------AEQAARLLAQATAEVARYLAGLE--QELAELVLEIV 103 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 45678999999999999999977665444433211 11223445555555555555555 67777788888
Q ss_pred HHHHHhhccChhHHHHHHHHHHHHHHHhcCCC-ceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccCCCCCCC
Q 029859 97 SKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG 175 (186)
Q Consensus 97 ~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~-~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~~~ 175 (186)
++=|..+..+ ++|...+.+++..+..+ .|+|++-..|++.+...+..+. .| .|.+ ++.|..+.-|+++
T Consensus 104 r~ILg~fd~~-----ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~~-~~---~g~~--~i~I~aDp~La~~ 172 (207)
T PF06635_consen 104 RKILGEFDPD-----ELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAALE-GR---PGRP--KIRIVADPRLAAG 172 (207)
T ss_pred HHHHhcCChH-----HHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhhh-cc---CCCC--ceeeecCCCCCCC
Confidence 7777777655 78888899999988877 8999999999999998887663 22 3554 5555555677766
Q ss_pred C
Q 029859 176 P 176 (186)
Q Consensus 176 ~ 176 (186)
.
T Consensus 173 ~ 173 (207)
T PF06635_consen 173 Q 173 (207)
T ss_pred C
Confidence 4
No 19
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=94.32 E-value=2.9 Score=35.84 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHH
Q 029859 110 YKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY 153 (186)
Q Consensus 110 Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y 153 (186)
...-|.+|.+....++....+ ..|-+.+..++.++....
T Consensus 134 ~e~el~~La~~iAeKIi~~el-----~~~~e~i~~lv~~al~~l 172 (255)
T TIGR03825 134 AQPLIIELACALAEKVIGVSL-----AEDKNAFQALVRQVLSEV 172 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhc
Confidence 456677888888887765443 234445556666555543
No 20
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=93.98 E-value=3.5 Score=35.13 Aligned_cols=92 Identities=11% Similarity=0.194 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~ 94 (186)
.-..++|+..|.+|...|..+...++..++.+.+..+....++....++.+++-... ..|.++.+-.+.
T Consensus 63 e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~-----------~l~~ei~~la~~ 131 (246)
T TIGR03321 63 EEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSD-----------ELRRRTGAEVFA 131 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 345668899999999999999999999999999998888777777777766544433 335555666666
Q ss_pred HHHHHHHhhccChhHHHHHHHHHH
Q 029859 95 AASKEVLNVSRDHNSYKKLLKGLI 118 (186)
Q Consensus 95 ~a~~kL~~~~~~~~~Y~~lLk~LI 118 (186)
-|.+-|.... |+...+.++...|
T Consensus 132 ~A~kil~~~~-d~~~~~~lid~~i 154 (246)
T TIGR03321 132 IARKVLTDLA-DTDLEERMVDVFV 154 (246)
T ss_pred HHHHHHHHhc-ChHHHHHHHHHHH
Confidence 6666665543 3334445555544
No 21
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=93.86 E-value=2.8 Score=35.78 Aligned_cols=61 Identities=8% Similarity=0.197 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHh-hccChhHHHHHHHHHHHHHHHhcCC--CceEEeeccccHHHHHHHHHH
Q 029859 84 AQDDLVSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQSLLRLKE--PAVLLRCRKDDHHLVESVLES 148 (186)
Q Consensus 84 aRe~~i~~l~~~a~~kL~~-~~~~~~~Y~~lLk~LI~qgl~~L~e--~~v~V~~rk~D~~lV~~~l~~ 148 (186)
.++.+|+-++.-|++=+.. +..|+ ..+..+|.++|-.|.. +.|+|+|+..|+++|+..+++
T Consensus 120 ~~~~ll~La~~iA~~vi~~el~~~p----~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e 183 (236)
T PRK13386 120 QRDELLDLVEKVTRQVIRCELTLQP----QQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPE 183 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhc
Confidence 3556666666666655554 24444 5677999999999954 589999999999999987765
No 22
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=93.72 E-value=3 Score=33.56 Aligned_cols=92 Identities=10% Similarity=0.144 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~ 94 (186)
.-..++|+.+|.+|...|..+.+.++..++.+....+....+.....++.+++-. .-..|.++.+-.+.
T Consensus 77 ~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a-----------~~~l~~qi~~la~~ 145 (174)
T PRK07352 77 QQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERV-----------IAQLRREAAELAIA 145 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 3456788888999999999998888888888887777776666666665544333 23345667777777
Q ss_pred HHHHHHHhhccChhHHHHHHHHHH
Q 029859 95 AASKEVLNVSRDHNSYKKLLKGLI 118 (186)
Q Consensus 95 ~a~~kL~~~~~~~~~Y~~lLk~LI 118 (186)
-|.+-|..-. |+.....++..+|
T Consensus 146 ~A~kil~~~l-~~~~~~~li~~~i 168 (174)
T PRK07352 146 KAESQLPGRL-DEDAQQRLIDRSI 168 (174)
T ss_pred HHHHHHHhHc-CHHHHHHHHHHHH
Confidence 7777777654 3334555555544
No 23
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=93.27 E-value=2.7 Score=31.55 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 029859 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNAS 77 (186)
Q Consensus 17 I~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~ 77 (186)
+.++|+.+|.+|...|..+.+-.+..++.+.........++-.+.++..+.-..+...++.
T Consensus 18 ~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~ei 78 (103)
T PRK08404 18 RIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEI 78 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666665555555666665555555555555555544444444433333
No 24
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=92.80 E-value=5.1 Score=33.49 Aligned_cols=93 Identities=20% Similarity=0.136 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (186)
Q Consensus 14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~ 93 (186)
..-..++|+.+|.+|...|.++.+.++..++.+.+..+....+....+++.+++-.. -..|.++.+-..
T Consensus 105 ~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~-----------~~Lk~ei~~lAv 173 (205)
T PRK06231 105 AKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELK-----------EQLQKESVELAM 173 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 345677888888888888888888888888887777766655555555554443332 223444455555
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHH
Q 029859 94 EAASKEVLNVSRDHNSYKKLLKGLI 118 (186)
Q Consensus 94 ~~a~~kL~~~~~~~~~Y~~lLk~LI 118 (186)
.-|.+-|.+-. |+...+.++...|
T Consensus 174 ~iA~kiL~k~l-d~~~~~~lI~~~i 197 (205)
T PRK06231 174 LAAEELIKKKV-DREDDDKLVDEFI 197 (205)
T ss_pred HHHHHHHHhhC-CHHHHHHHHHHHH
Confidence 55555554433 3334555555554
No 25
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=92.70 E-value=4.7 Score=32.81 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~ 94 (186)
.-+.++|+..|.+|...|..+.+.++..++.+....+....+.-...++.+++-. .-..|.++.+-.++
T Consensus 82 e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a-----------~~~l~~ei~~lav~ 150 (184)
T CHL00019 82 RARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRA-----------INQVRQQVFQLALQ 150 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 3478889999999999999999988889998888888876666666666554433 23445667777777
Q ss_pred HHHHHHHhhccChhHHHHHHHHHH
Q 029859 95 AASKEVLNVSRDHNSYKKLLKGLI 118 (186)
Q Consensus 95 ~a~~kL~~~~~~~~~Y~~lLk~LI 118 (186)
-|.+-|.+.. |++....++...|
T Consensus 151 ~A~kil~~~l-d~~~~~~lid~~i 173 (184)
T CHL00019 151 RALGTLNSCL-NNELHLRTINANI 173 (184)
T ss_pred HHHHHHHhHc-CHHHHHHHHHHHH
Confidence 7777777754 4434555555544
No 26
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=92.39 E-value=9.4 Score=35.57 Aligned_cols=107 Identities=14% Similarity=0.071 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (186)
Q Consensus 14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~ 93 (186)
..-+.++|+.+|.+|...|.++.+-++..++.+....+....+....+++.+++-.. -..|.++.+-.+
T Consensus 58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~-----------~elr~ei~~lAv 126 (445)
T PRK13428 58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLT-----------RQLRLELGHESV 126 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 445677788888888888888888777777777776666666666666554443321 234566667777
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEE
Q 029859 94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLL 132 (186)
Q Consensus 94 ~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V 132 (186)
..|.+-|.+-..++...+.++...| +.+-.+..+...|
T Consensus 127 ~~A~kil~~~l~d~~~~~~lId~~i-~~l~~~~~~~~~~ 164 (445)
T PRK13428 127 RQAGELVRNHVADPAQQSATVDRFL-DELDAMAPSTADV 164 (445)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HHhhccCCCchhh
Confidence 7777777654334333345554444 4555555554333
No 27
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=92.39 E-value=5.1 Score=32.58 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HhHHHHH
Q 029859 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE--------YSMQLNA 76 (186)
Q Consensus 5 ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~--------~S~~~n~ 76 (186)
++..+.+.=..-|..+|+.+|++|...|.++.+.+...++...+..+...-++....+.++.+.. .+...+.
T Consensus 10 ~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~ 89 (198)
T PRK03963 10 EINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEA 89 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677778888888888888888888887778888777666655554444444443322 3334444
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHH
Q 029859 77 SRIKVLQA----QDDLVSNMMEAASKEVL 101 (186)
Q Consensus 77 ~Rl~~L~a----Re~~i~~l~~~a~~kL~ 101 (186)
++-++.+. -..+|..++.++-..|.
T Consensus 90 a~~~l~~~~~~~Y~~~l~~li~~a~~~l~ 118 (198)
T PRK03963 90 VRERLAELPEDEYFETLKALTKEAVEELG 118 (198)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhC
Confidence 55333321 33567777777766664
No 28
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=91.28 E-value=7.2 Score=32.00 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HhHHHHH
Q 029859 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE--------YSMQLNA 76 (186)
Q Consensus 5 ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~--------~S~~~n~ 76 (186)
++.++.++=..-|..+|+.+|++|...|+++.+-.+..+.......+...+++-...+.++.+.. .....+.
T Consensus 9 ~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~ 88 (185)
T PRK01194 9 DIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDI 88 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778889999999999999999999999988888888888777777777777666663322 2233444
Q ss_pred HHHHH--HH---HHHHHHHHHHHHHHHHH
Q 029859 77 SRIKV--LQ---AQDDLVSNMMEAASKEV 100 (186)
Q Consensus 77 ~Rl~~--L~---aRe~~i~~l~~~a~~kL 100 (186)
++-++ |. ...++|..++..+-..|
T Consensus 89 a~e~L~~l~~~~~Y~~~L~~LI~~a~~~l 117 (185)
T PRK01194 89 AYEHLMNITKSKEYDSILNKMIEVAIKTL 117 (185)
T ss_pred HHHHHHcccCCchHHHHHHHHHHHHHHhc
Confidence 44333 22 35567777777765553
No 29
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=90.58 E-value=7.8 Score=31.17 Aligned_cols=92 Identities=21% Similarity=0.266 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~ 94 (186)
.-..++|+.+|.+|...|..+..-++..++.+....+....+....+++.+++-.. -..|.++.+-.+.
T Consensus 74 e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~-----------~el~~ei~~lA~~ 142 (173)
T PRK13460 74 EARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKAL-----------SQLQNQIVEMTIT 142 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 44567888888888888888888888888887777777665555555554433222 1234555566666
Q ss_pred HHHHHHHhhccChhHHHHHHHHHH
Q 029859 95 AASKEVLNVSRDHNSYKKLLKGLI 118 (186)
Q Consensus 95 ~a~~kL~~~~~~~~~Y~~lLk~LI 118 (186)
-|.+-|..-. |+.....++...|
T Consensus 143 ~a~kil~~~l-~~~~~~~lid~~i 165 (173)
T PRK13460 143 IASKVLEKQL-KKEDYKAFIETEL 165 (173)
T ss_pred HHHHHHHHHC-CHHHHHHHHHHHH
Confidence 6666665543 3334444444444
No 30
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=90.46 E-value=7.9 Score=31.01 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 18 RQEAEEKANEISVSAEEEFNIEKLQLVEA 46 (186)
Q Consensus 18 ~qEA~eKA~EI~~kA~eef~iEK~~lv~~ 46 (186)
...|+.+|.+|...|.++..-+...++.+
T Consensus 71 L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~ 99 (167)
T PRK14475 71 REEAERQAAAMLAAAKADARRMEAEAKEK 99 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555443343333
No 31
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=90.18 E-value=6 Score=29.20 Aligned_cols=92 Identities=15% Similarity=0.244 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASK 98 (186)
Q Consensus 19 qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a~~ 98 (186)
-+|+..|.+|-.+|...-. .++.+.+.....+.+.=..+.+ ...+....+.++..+.....+..++..
T Consensus 10 l~AE~eA~~iV~~Ar~~r~----~~lk~Ak~eA~~ei~~~r~~~e--------~~~~~~~~~~~~~~~~~~~~l~~et~~ 77 (105)
T PF03179_consen 10 LEAEKEAQEIVEEARKERE----QRLKQAKEEAEKEIEEFRAEAE--------EEFKEKEAEAEGEAEQEAEELEKETEE 77 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHH-S------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 3677777777777776655 6666666655443322222211 112222335566677788888888888
Q ss_pred HHHhhccChhHHHHHHHHHHHHHH
Q 029859 99 EVLNVSRDHNSYKKLLKGLIVQSL 122 (186)
Q Consensus 99 kL~~~~~~~~~Y~~lLk~LI~qgl 122 (186)
++..+..+.....+-..++|+..+
T Consensus 78 ~i~~i~~~~~~~~~~vv~~ll~~V 101 (105)
T PF03179_consen 78 KIEEIKKSASKNKDKVVDMLLSRV 101 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 888886655555555555555544
No 32
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=88.22 E-value=11 Score=29.80 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (186)
Q Consensus 14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~ 93 (186)
..-...+|+.+|.+|...|..+..-++..++.+...+.....+....+++.++.-... ..|.++.+-.+
T Consensus 65 ~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~-----------~L~~~i~~la~ 133 (164)
T PRK14473 65 YEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLS-----------ELKSQIADLVT 133 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 3456678888888888888888888888888888887777666666666655544332 23445555555
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHH
Q 029859 94 EAASKEVLNVSRDHNSYKKLLKGLI 118 (186)
Q Consensus 94 ~~a~~kL~~~~~~~~~Y~~lLk~LI 118 (186)
.-|.+-|..-. |++.+..++...|
T Consensus 134 ~~a~kil~~~l-~~~~~~~li~~~i 157 (164)
T PRK14473 134 LTASRVLGAEL-QARGHDALIAESL 157 (164)
T ss_pred HHHHHHHHhHc-CHHHHHHHHHHHH
Confidence 55555554432 4445555555544
No 33
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=88.17 E-value=16 Score=31.43 Aligned_cols=89 Identities=12% Similarity=0.196 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS 97 (186)
Q Consensus 18 ~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a~ 97 (186)
.++|+.++.+|...|..+.+-++.+++.+.+..+....++....++.+++-.... .|.++.+-++.-|+
T Consensus 66 l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~-----------L~~~v~~la~~~A~ 134 (250)
T PRK14474 66 QQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKA-----------LQQQTGQQMVKIIR 134 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 4578888888999999999988889999988888887777777777665544333 34556666677777
Q ss_pred HHHHhhccChhHHHHHHHHHH
Q 029859 98 KEVLNVSRDHNSYKKLLKGLI 118 (186)
Q Consensus 98 ~kL~~~~~~~~~Y~~lLk~LI 118 (186)
+-|.+.. |+.....++..+|
T Consensus 135 kiL~~~~-d~~~~~~lid~~i 154 (250)
T PRK14474 135 AALADLA-NATLEQQIVGIFI 154 (250)
T ss_pred HHHHhhc-CHHHHHHHHHHHH
Confidence 7666654 3334555555555
No 34
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=88.15 E-value=7.7 Score=27.74 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029859 20 EAEEKANEISVSAEEEFN 37 (186)
Q Consensus 20 EA~eKA~EI~~kA~eef~ 37 (186)
+|+.+|.+|...|..+.+
T Consensus 17 ~A~~ea~~Ii~~A~~~A~ 34 (85)
T TIGR02926 17 EAEEERKQRIAEAREEAR 34 (85)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 35
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=87.35 E-value=14 Score=29.75 Aligned_cols=51 Identities=14% Similarity=0.209 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~ 65 (186)
.-...+|+.+|.+|...|.++.+.++..++.+....+....+....+++.+
T Consensus 76 e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e 126 (175)
T PRK14472 76 RELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQE 126 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777788888888888777777777766666665444444444433
No 36
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=86.71 E-value=10 Score=29.03 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~ 53 (186)
.-...+|+..|.+|...|..+.+-++..++.+....+..
T Consensus 63 e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~ 101 (140)
T PRK07353 63 EQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQA 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666655555544
No 37
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=86.51 E-value=14 Score=29.09 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~ 94 (186)
.-...+|+.+|.+|...|..+.+-++..++.+.........+....+++..+.-. .-..|.++.+-.+.
T Consensus 63 ~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a-----------~~~l~~ei~~lA~~ 131 (159)
T PRK13461 63 ERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKA-----------EYEIKNQAVDLAVL 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 4566778888888888888888888888888877777765555555555333222 22334455555555
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHH
Q 029859 95 AASKEVLNVSRDHNSYKKLLKGLIV 119 (186)
Q Consensus 95 ~a~~kL~~~~~~~~~Y~~lLk~LI~ 119 (186)
-|.+-|.... |+.....++...|.
T Consensus 132 ~a~kil~~~~-~~~~~~~li~~~i~ 155 (159)
T PRK13461 132 LSSKALEESI-DESEHRRLIKDFIS 155 (159)
T ss_pred HHHHHHHhHc-CHHHHHHHHHHHHh
Confidence 5555555543 33345555555443
No 38
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=86.47 E-value=10 Score=30.07 Aligned_cols=51 Identities=16% Similarity=0.061 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~ 65 (186)
.-..++|+..|.+|...|.++.+-++..++.+.+.......+....+++.+
T Consensus 80 e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~e 130 (156)
T CHL00118 80 EQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQ 130 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777776666666666655555444444444433
No 39
>PRK12704 phosphodiesterase; Provisional
Probab=86.11 E-value=32 Score=32.80 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 029859 77 SRIKVLQAQDDLVSNMMEAASKEVLNVSRD 106 (186)
Q Consensus 77 ~Rl~~L~aRe~~i~~l~~~a~~kL~~~~~~ 106 (186)
.|.+.|..+..-++.+..+...+|..+++=
T Consensus 121 ~re~eLe~~~~~~~~~~~~~~~~l~~~a~l 150 (520)
T PRK12704 121 QKQQELEKKEEELEELIEEQLQELERISGL 150 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333455555556666666666667666443
No 40
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=84.98 E-value=13 Score=27.38 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHh-hccChhHHHHHHHHHHHHHH-HhcC-CCceEEeeccccHHHHHHHHHHHHH
Q 029859 84 AQDDLVSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQSL-LRLK-EPAVLLRCRKDDHHLVESVLESAKE 151 (186)
Q Consensus 84 aRe~~i~~l~~~a~~kL~~-~~~~~~~Y~~lLk~LI~qgl-~~L~-e~~v~V~~rk~D~~lV~~~l~~~~~ 151 (186)
.+.++++-++.-|++=+.. +..++ ..+..+|.+++ ..+. .+.++|++...|++.++..++....
T Consensus 25 ~~~~l~~l~~~iae~vi~~~l~~~~----~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~ 91 (128)
T PF02108_consen 25 LEQELVELALAIAEKVIGRELEEDP----EAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELP 91 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHh
Confidence 5566666666666655553 33333 67778899998 4443 3489999999999999988874433
No 41
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=84.96 E-value=22 Score=29.99 Aligned_cols=59 Identities=27% Similarity=0.266 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcC--CCceEEeeccccHHHHHHHHH
Q 029859 85 QDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLE 147 (186)
Q Consensus 85 Re~~i~~l~~~a~~kL~~~-~~~~~~Y~~lLk~LI~qgl~~L~--e~~v~V~~rk~D~~lV~~~l~ 147 (186)
+..+++-++.-|++=+..- ..++ ..+..+|.+++-.|. .+.|+|+|...|+++|+..+.
T Consensus 134 e~~Lv~Lal~ia~~vi~~el~~~~----~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~ 195 (246)
T PRK05687 134 ESRLVQLALELARQVIGQELKTDP----SAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLG 195 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCH----HHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHh
Confidence 4455665666665555542 3343 677789999999974 578999999999999999876
No 42
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=84.42 E-value=22 Score=29.40 Aligned_cols=42 Identities=31% Similarity=0.352 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (186)
Q Consensus 7 ~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~ 52 (186)
-.+-++=..-|..+|+.+|++|..+|+++.+ .|+........
T Consensus 17 ~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe----~i~~kAe~ea~ 58 (198)
T PRK01558 17 LEEAERLANEIILEAKEEAEEIIAKAEEEAK----ELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3444555677888999999999999888877 66666555544
No 43
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=82.62 E-value=22 Score=28.12 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (186)
Q Consensus 14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~ 93 (186)
..-+..+|+.+|.+|...|.++.+-.+..++.+........-+....+++.++.-. .-..|.++.+-.+
T Consensus 65 ~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a-----------~~~l~~~i~~la~ 133 (164)
T PRK14471 65 NERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAA-----------MAEIKNQVANLSV 133 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 34456677777777777777777755555555555444443333333333222211 1223445555555
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHH
Q 029859 94 EAASKEVLNVSRDHNSYKKLLKGLI 118 (186)
Q Consensus 94 ~~a~~kL~~~~~~~~~Y~~lLk~LI 118 (186)
+-|.+-|..-..+++....++...|
T Consensus 134 ~~a~kil~~~l~~~~~~~~lid~~i 158 (164)
T PRK14471 134 EIAEKVLRKELSNKEKQHKLVEKML 158 (164)
T ss_pred HHHHHHHHHHcCcHhHHHHHHHHHH
Confidence 6665555553322223344444444
No 44
>PRK00106 hypothetical protein; Provisional
Probab=82.21 E-value=49 Score=31.85 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccChh--HHHHHHHHHHHH
Q 029859 77 SRIKVLQAQDDLVSNMMEAASKEVLNVSRDHN--SYKKLLKGLIVQ 120 (186)
Q Consensus 77 ~Rl~~L~aRe~~i~~l~~~a~~kL~~~~~~~~--~Y~~lLk~LI~q 120 (186)
.|.+.|..+..-++.+..+...+|..+++-+. -...||..+-.+
T Consensus 136 ~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~ 181 (535)
T PRK00106 136 DKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENK 181 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 33455555555666666666667776654431 233444444333
No 45
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=81.79 E-value=25 Score=28.13 Aligned_cols=59 Identities=31% Similarity=0.300 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Q 029859 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASR 78 (186)
Q Consensus 16 FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~R 78 (186)
--+.+|+.+|.+|...|..+.. .+.+.-+.+...+.++...+...+-..+.+..+..-|
T Consensus 65 ~~l~~Ar~~a~~Ii~~A~~~a~----~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~ 123 (161)
T COG0711 65 QELEEAREQASEIIEQAKKEAE----QIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELR 123 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777888888888888877 5555555555555555555555444444444444444
No 46
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=81.44 E-value=23 Score=27.53 Aligned_cols=93 Identities=15% Similarity=0.083 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (186)
Q Consensus 14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~ 93 (186)
..-...+|+.+|.+|...|..+.+-++..++.+....+....+.....++.+++-. .-..|.++.+-.+
T Consensus 61 ~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a-----------~~~l~~~~~~lA~ 129 (156)
T PRK05759 61 YEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRA-----------REELRKQVADLAV 129 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 44566778888888888888888877777777777777665555555555443222 2234455666666
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHH
Q 029859 94 EAASKEVLNVSRDHNSYKKLLKGLI 118 (186)
Q Consensus 94 ~~a~~kL~~~~~~~~~Y~~lLk~LI 118 (186)
.-|.+-|.... |+.....++...|
T Consensus 130 ~~a~k~l~~~~-d~~~~~~~i~~~i 153 (156)
T PRK05759 130 AGAEKILGREL-DAAAQSDLIDKLI 153 (156)
T ss_pred HHHHHHHHhHc-CHHHHHHHHHHHH
Confidence 66655555543 3334445554444
No 47
>PRK00106 hypothetical protein; Provisional
Probab=80.96 E-value=55 Score=31.55 Aligned_cols=18 Identities=33% Similarity=0.363 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029859 19 QEAEEKANEISVSAEEEF 36 (186)
Q Consensus 19 qEA~eKA~EI~~kA~eef 36 (186)
.+|+.+|++|...|..+.
T Consensus 49 eeAe~eAe~I~keA~~EA 66 (535)
T PRK00106 49 GKAERDAEHIKKTAKRES 66 (535)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 48
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=80.93 E-value=23 Score=27.26 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 029859 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI 64 (186)
Q Consensus 14 v~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~ 64 (186)
..-+.++|+..|.+|...|..+.+-.+..++.+....+....+.....++.
T Consensus 52 ~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~ 102 (147)
T TIGR01144 52 AQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEA 102 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777788877777777666666666665555544444444443
No 49
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=80.61 E-value=29 Score=28.10 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (186)
Q Consensus 18 ~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~ 52 (186)
.++|+.+|.+|...|..+...+...+..+....+.
T Consensus 88 L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~ 122 (184)
T PRK13455 88 QREVQEQADRIVAAAKDEAQAAAEQAKADLEASIA 122 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444444444333333
No 50
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=80.29 E-value=22 Score=26.52 Aligned_cols=39 Identities=31% Similarity=0.298 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~ 53 (186)
.-...+|+..+.+|...|.++.+-++..++.+....+..
T Consensus 57 ~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~ 95 (132)
T PF00430_consen 57 EEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAER 95 (132)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666655555554444544444444443
No 51
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=79.72 E-value=34 Score=28.46 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE 99 (186)
Q Consensus 20 EA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a~~k 99 (186)
+++.....|.-.|+++.+ +|...........-++....++ -..-......+-..-..|..++..+..+++..
T Consensus 3 ~~e~~i~~I~~~a~eeak----~I~~eA~~eae~i~~ea~~~~~----~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~ 74 (194)
T COG1390 3 ELEKLIKKILREAEEEAE----EILEEAREEAEKIKEEAKREAE----EAIEEILRKAEKEAERERQRIISSALLEARRK 74 (194)
T ss_pred cHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999988888 7777655554433222222222 33334555566677778888888888888888
Q ss_pred HHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHH
Q 029859 100 VLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY 153 (186)
Q Consensus 100 L~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y 153 (186)
+.. .++.+|.+.+...-..| .---...++..+..++.++...|
T Consensus 75 ~Le------~~ee~l~~~~~~~~e~L-----~~i~~~~~~~~l~~ll~~~~~~~ 117 (194)
T COG1390 75 LLE------AKEEILESVFEAVEEKL-----RNIASDPEYESLQELLIEALEKL 117 (194)
T ss_pred HHH------HHHHHHHHHHHHHHHHH-----HcCcCCcchHHHHHHHHHHHHhc
Confidence 766 57777777433332222 22233456666777777777765
No 52
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=79.09 E-value=32 Score=27.69 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 029859 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65 (186)
Q Consensus 16 FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~ 65 (186)
-...+|+.+|.+|...|..+.+-++..++.+.........+....+++.+
T Consensus 77 ~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e 126 (173)
T PRK13453 77 QKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQ 126 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777776666776666666665444444444433
No 53
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=78.58 E-value=25 Score=26.25 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (186)
Q Consensus 20 EA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a 96 (186)
+|+..++++-..|..+.. .|+...+..-...|+.-..++... -...+..+|..+=..|...+..+..++
T Consensus 10 ~aE~~~e~~L~~A~~Ea~----~Ii~~Ak~~A~k~~~eii~eA~~e----A~~ile~Ak~eie~Ek~~a~~elk~ei 78 (103)
T PRK08404 10 KAEKEAEERIEKAKEEAK----KIIRKAKEEAKKIEEEIIKKAEEE----AQKLIEKKKKEGEEEAKKILEEGEKEI 78 (103)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888888 888888888888887777777644 334566667667677777666666555
No 54
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=77.70 E-value=41 Score=28.27 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 029859 8 KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRK 66 (186)
Q Consensus 8 ~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k 66 (186)
...++=-.-|..+|+.+|++|..+|..+.+ +|+.+....+..+..+-...+++..
T Consensus 23 ~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe----~ii~~A~~eae~ek~r~~s~a~l~~ 77 (207)
T PRK01005 23 KPAEEEAGAIVHNAKEQAKRIIAEAQEEAE----KIIRSAEETADQKLKQGESALVQAG 77 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667888888888888888888766 8888888888777766666555553
No 55
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=77.23 E-value=40 Score=27.85 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHHHHHH
Q 029859 78 RIKVLQAQDDLVSNMMEAASKEVLNVSRDH--NSYKKLLKGLIVQS 121 (186)
Q Consensus 78 Rl~~L~aRe~~i~~l~~~a~~kL~~~~~~~--~~Y~~lLk~LI~qg 121 (186)
+...|..+..-++.+..+...+|..+++=+ .-...||..|-.++
T Consensus 118 ~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~eEAk~~Ll~~le~e~ 163 (201)
T PF12072_consen 118 RKEELEEREEELEELIEEQQQELEEIAGLTAEEAKEILLEKLEEEA 163 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 335566666667777777777776665433 12444555544443
No 56
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=76.65 E-value=38 Score=27.30 Aligned_cols=22 Identities=9% Similarity=-0.003 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029859 16 FIRQEAEEKANEISVSAEEEFN 37 (186)
Q Consensus 16 FI~qEA~eKA~EI~~kA~eef~ 37 (186)
-.+.+|+.+|.+|...|.+...
T Consensus 63 ~~L~~Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 63 AQIKKLETLRSQMIEESNEVTK 84 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666667766666666
No 57
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=74.06 E-value=38 Score=25.99 Aligned_cols=36 Identities=33% Similarity=0.377 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (186)
Q Consensus 17 I~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~ 52 (186)
|..+|.++|++|..+|+.+..-.+..++......+.
T Consensus 33 ~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e 68 (108)
T COG2811 33 IIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAE 68 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444444444433333
No 58
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=73.97 E-value=47 Score=27.03 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEA 46 (186)
Q Consensus 16 FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ 46 (186)
-++++|+.+|.+|...|.++.+-++..++.+
T Consensus 90 ~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~ 120 (181)
T PRK13454 90 KALADARAEAQRIVAETRAEIQAELDVAIAK 120 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555333333333
No 59
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=73.18 E-value=45 Score=26.51 Aligned_cols=54 Identities=35% Similarity=0.382 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 029859 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI 64 (186)
Q Consensus 11 ~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~ 64 (186)
+.=.+-|..+|++.++.|...|.++..-....+++.....+.....+....+.+
T Consensus 7 ~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 60 (198)
T PF01991_consen 7 QEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAEL 60 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666666666666555555555555555555444444433333
No 60
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=73.06 E-value=88 Score=29.83 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhccCh--hHHHHHHHHHHHH
Q 029859 88 LVSNMMEAASKEVLNVSRDH--NSYKKLLKGLIVQ 120 (186)
Q Consensus 88 ~i~~l~~~a~~kL~~~~~~~--~~Y~~lLk~LI~q 120 (186)
-+..+..+...+|..+++-+ .-...||..+-.+
T Consensus 126 e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~ 160 (514)
T TIGR03319 126 ELEELIAEQREELERISGLTQEEAKEILLEEVEEE 160 (514)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 33344444444566554332 1233444444433
No 61
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=72.93 E-value=61 Score=27.94 Aligned_cols=51 Identities=8% Similarity=0.092 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeecc
Q 029859 110 YKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH 168 (186)
Q Consensus 110 Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~ 168 (186)
+.+-|.+|++.-+.++. +. .-..|-.++..++.++..... +...++|.|++
T Consensus 164 ~e~elv~Lal~iaekvi-~~----~~~~~~~~i~~li~~al~~l~---~~~~i~I~V~p 214 (281)
T PRK06669 164 SEEEIVELALDIAKKVI-KE----ISENSKEIALALVKELLKEVK---DATDITIRVNP 214 (281)
T ss_pred HHHHHHHHHHHHHHHHH-HH----HhccCHHHHHHHHHHHHHHcC---cCCcEEEEECH
Confidence 34445566666555544 21 122466666666666665543 32335666654
No 62
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=72.31 E-value=32 Score=24.45 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~ 53 (186)
..|..+|...|+.|...+..+...+..+|+.+.+..|..
T Consensus 23 ~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~ 61 (85)
T TIGR02926 23 KQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEK 61 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555544
No 63
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=72.07 E-value=61 Score=27.52 Aligned_cols=94 Identities=20% Similarity=0.299 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Q 029859 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA 84 (186)
Q Consensus 5 ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~a 84 (186)
+...+...|++--..+|..-.++|...|.++.+ ++..+.+..|..+-.+-.. +++.++..-...-.. ++|+.
T Consensus 68 ~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~----~~~~~a~~~ie~E~~~a~~--~l~~ei~~la~~~A~--kil~~ 139 (246)
T TIGR03321 68 ELDQQREVLLTKAKEEAQAERQRLLDEAREEAD----EIREKWQEALRREQAALSD--ELRRRTGAEVFAIAR--KVLTD 139 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HHHHH
Confidence 445666777777777777777788888888877 7777777777764433333 344444433333332 23322
Q ss_pred --HHHHHHHHHHHHHHHHHhhccC
Q 029859 85 --QDDLVSNMMEAASKEVLNVSRD 106 (186)
Q Consensus 85 --Re~~i~~l~~~a~~kL~~~~~~ 106 (186)
=.+.=..+++..-++|..++.+
T Consensus 140 ~~d~~~~~~lid~~i~~l~~l~~~ 163 (246)
T TIGR03321 140 LADTDLEERMVDVFVQRLRTLDPD 163 (246)
T ss_pred hcChHHHHHHHHHHHHHhhcCCHH
Confidence 1122235556666667666544
No 64
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=70.52 E-value=62 Score=27.02 Aligned_cols=31 Identities=19% Similarity=0.067 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVE 45 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~ 45 (186)
.-.+.+|+.+|.+|...|.++.+-+...++.
T Consensus 111 e~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~ 141 (204)
T PRK09174 111 EQELAQARAKAHSIAQAAREAAKAKAEAERA 141 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666665555533333333
No 65
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=65.24 E-value=70 Score=25.60 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (186)
Q Consensus 10 i~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~ 53 (186)
...+++-...+|..-.++|...|.++.+ +++.+....|..
T Consensus 84 a~~ii~~A~~ea~~~~~~~~~~A~~ea~----~~~~~a~~~ie~ 123 (173)
T PRK13460 84 ANAIVAEAKSDALKLKNKLLEETNNEVK----AQKDQAVKEIEL 123 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3333333333333333344444443333 444444444443
No 66
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=65.12 E-value=90 Score=26.81 Aligned_cols=94 Identities=13% Similarity=0.171 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Q 029859 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA 84 (186)
Q Consensus 5 ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~a 84 (186)
+...+...|++-...+|.....+|..+|.++.+ ++..+.+..|..+.++-.++ ++.++..=. +.-++ ++|+.
T Consensus 68 ~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~----~~~~~a~~~ie~Ek~~a~~~--L~~~v~~la-~~~A~-kiL~~ 139 (250)
T PRK14474 68 SLEQQRASFMAQAQEAADEQRQHLLNEAREDVA----TARDEWLEQLEREKQEFFKA--LQQQTGQQM-VKIIR-AALAD 139 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHH-HHHHh
Confidence 344566667777777777777777777777777 77777777777644444333 333333222 22222 33332
Q ss_pred --HHHHHHHHHHHHHHHHHhhccC
Q 029859 85 --QDDLVSNMMEAASKEVLNVSRD 106 (186)
Q Consensus 85 --Re~~i~~l~~~a~~kL~~~~~~ 106 (186)
-...-..+++..-++|..++..
T Consensus 140 ~~d~~~~~~lid~~i~~l~~l~~~ 163 (250)
T PRK14474 140 LANATLEQQIVGIFIARLEHLSEA 163 (250)
T ss_pred hcCHHHHHHHHHHHHHHhcccCHH
Confidence 1222335555555666665543
No 67
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=64.85 E-value=66 Score=25.22 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029859 74 LNASRIKVLQAQDDLVSNMM 93 (186)
Q Consensus 74 ~n~~Rl~~L~aRe~~i~~l~ 93 (186)
.+.+|..+-..|...+.++.
T Consensus 100 ~~~a~~~I~~ek~~a~~el~ 119 (159)
T PRK09173 100 NKLAEQKIAQAETDAINAVR 119 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 68
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=64.22 E-value=93 Score=26.70 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~ 94 (186)
.-|...|..||.+|--.|..+-. .+..+.....+.-...-..+ .-+...+.-.+-|-+-+++-..+..
T Consensus 44 ~~il~~A~rkA~~I~q~A~~~~~----~ll~qaqqqad~L~~~~~~~--------~E~~~L~qHV~wLve~e~lE~sLV~ 111 (224)
T PRK15354 44 HAIVSSAYRKAEKIIRDAYRYQR----EQKVEQQQELACLRKNTLEK--------MEVEWLEQHVKHLQEDENQFRSLVD 111 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 46888999999999888876655 55554443333211111111 2233334444555566666666666
Q ss_pred HHHHHHHhh--------ccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHH
Q 029859 95 AASKEVLNV--------SRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 146 (186)
Q Consensus 95 ~a~~kL~~~--------~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l 146 (186)
.++..+..- ++..+--.-|...|=.|..---.++.+++++..++.+.+...+
T Consensus 112 ~~~~~I~~aI~~VltaW~gQQ~isq~Li~RLa~Qv~~mA~eg~LtL~VHP~~~~am~~af 171 (224)
T PRK15354 112 HAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIHPEKEALMRETF 171 (224)
T ss_pred HHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCceEEEECHHHHHHHHHHH
Confidence 666555442 2333344556667777888888889999999999998775443
No 69
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=62.56 E-value=88 Score=25.82 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHH-HHHHHHHhHHHHHHHHHHHHHHHH
Q 029859 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEK-------KKIRQEYERKEKQVE-IRKKIEYSMQLNASRIKVLQAQDD 87 (186)
Q Consensus 16 FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek-------~kI~~~~ekk~kq~e-~~k~I~~S~~~n~~Rl~~L~aRe~ 87 (186)
.-...|+.+|..|...|..+.+..+....-..+ ..+..++..+...+. ..+++..=-..-..|...|..|+.
T Consensus 27 ~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~ 106 (201)
T PF12072_consen 27 KKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREE 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667777777777777666644333333322 223333332222222 113333323333344455555555
Q ss_pred HHHHHHHHHHHHHHhh
Q 029859 88 LVSNMMEAASKEVLNV 103 (186)
Q Consensus 88 ~i~~l~~~a~~kL~~~ 103 (186)
-|+.--.....+...+
T Consensus 107 ~l~~~~~~l~~~~~~l 122 (201)
T PF12072_consen 107 ELEKKEEELEQRKEEL 122 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555544443333333
No 70
>PHA03065 Hypothetical protein; Provisional
Probab=61.03 E-value=1.5e+02 Score=27.98 Aligned_cols=83 Identities=24% Similarity=0.294 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-----cChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHH
Q 029859 80 KVLQAQDDLVSNMMEAASKEVLNVS-----RDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA 154 (186)
Q Consensus 80 ~~L~aRe~~i~~l~~~a~~kL~~~~-----~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~ 154 (186)
+-|..=+...+++..+-.-++.+++ .+ ..-|+.++..+|-.++++--+|+|-.-|.+.| +--.|.+.+
T Consensus 111 ~~ld~~d~~yEEikt~~~lrI~Kl~F~~fLa~----~~nlk~~l~~~L~~~~~~v~I~yCdgvDAEfv--MC~~ak~~a- 183 (438)
T PHA03065 111 KNLDVDDEMYEEIKTDLELKIDKLSFQLFLAN----SNNLKRLLESALARLGENVEIVYCDGVDAEFV--MCARAKELA- 183 (438)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHHHHHHHcc----hhhHHHHHHHHHHhccCCceEEEECCcchhHH--HHHHHHHHH-
Confidence 5566666777777777777776632 22 25688999999999999988999999999998 555555554
Q ss_pred HHhCCCCCeEeeccC
Q 029859 155 QKLQVHPPEIIVDHH 169 (186)
Q Consensus 155 ~~~~~~~~~i~id~~ 169 (186)
..+|.=+.=|+.|.+
T Consensus 184 ~~~g~WPl~iStDQD 198 (438)
T PHA03065 184 ATTGEWPLLISTDQD 198 (438)
T ss_pred hhcCCCceEEeccCC
Confidence 456654455666654
No 71
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=60.61 E-value=87 Score=25.13 Aligned_cols=50 Identities=12% Similarity=0.276 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (186)
Q Consensus 42 ~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~ 95 (186)
.|+.+.+......++....++.-+ ....+..+|..+-..+...+..+..+
T Consensus 88 ~ii~~a~~~a~~~~~~~~~~A~~e----a~~~~~~A~~~I~~ek~~a~~~l~~e 137 (173)
T PRK13453 88 KILEDAKVQARQQQEQIIHEANVR----ANGMIETAQSEINSQKERAIADINNQ 137 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444444433322 22233344444444444444444433
No 72
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=58.82 E-value=1.7e+02 Score=27.92 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCh-----hHHHHHHHHHHHHHHHhcCCC
Q 029859 84 AQDDLVSNMMEAASKEVLNVSRDH-----NSYKKLLKGLIVQSLLRLKEP 128 (186)
Q Consensus 84 aRe~~i~~l~~~a~~kL~~~~~~~-----~~Y~~lLk~LI~qgl~~L~e~ 128 (186)
+|+.+++.+-++++.....+.++- ..=...-+.+|.+++-.+..+
T Consensus 149 ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~aiqr~a~~ 198 (514)
T TIGR03319 149 AKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAIQRYAGD 198 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 455555555555555554442221 112233345555555555443
No 73
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=58.29 E-value=96 Score=24.91 Aligned_cols=85 Identities=21% Similarity=0.223 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHHhHHHHHHHHHHHH
Q 029859 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR--------KKIEYSMQLNASRIKVLQ 83 (186)
Q Consensus 12 kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~--------k~I~~S~~~n~~Rl~~L~ 83 (186)
.=..-|+.+|+..+.+|...|+.+.+-.+..+.............+....+... |+--.+.+.+.++-++.+
T Consensus 16 ~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~ 95 (188)
T PRK02292 16 ARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVEDEIAS 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555555444444433333333332222222222222 233344555555544433
Q ss_pred H----HHHHHHHHHHHH
Q 029859 84 A----QDDLVSNMMEAA 96 (186)
Q Consensus 84 a----Re~~i~~l~~~a 96 (186)
. ...+|..++..+
T Consensus 96 ~~~~~y~~~l~~li~~~ 112 (188)
T PRK02292 96 LDGDKREELTKSLLDAA 112 (188)
T ss_pred cchhhHHHHHHHHHHhc
Confidence 2 446666666666
No 74
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=57.58 E-value=98 Score=24.79 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE 99 (186)
Q Consensus 42 ~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a~~k 99 (186)
.|+.+.+......++....++. -........++..+-..|...+.++..++-..
T Consensus 92 ~Ii~~A~~eAe~~~~~ii~~A~----~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~~ 145 (167)
T PRK08475 92 LIVETAKKEAYILTQKIEKQTK----DDIENLIKSFEELMEFEVRKMEREVVEEVLNE 145 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444444444333333 22233344444445555555555544444333
No 75
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=55.59 E-value=1.2e+02 Score=25.01 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCC-CceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccCCCCCCC
Q 029859 113 LLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG 175 (186)
Q Consensus 113 lLk~LI~qgl~~L~e-~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~~~ 175 (186)
.+..++.+++-.+.+ |.|+|+|...|++.|+..+++..... |.. ..+.|-.+..|+++
T Consensus 112 ~v~~~v~eal~~l~~~~~v~I~v~P~d~~~l~~~l~~~~~~~----~~~-~~~~l~~D~~L~~G 170 (199)
T PRK06032 112 EITAAVRDCLRHLVATPHLVVRVNDALVEAARERLERLARES----GFE-GRLVVLADPDMAPG 170 (199)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECHHHHHHHHHHHHHHHHhc----CcC-ccEEEeeCCCCCCC
Confidence 477888888888877 46999999999999998888776653 322 23444334556554
No 76
>PRK12705 hypothetical protein; Provisional
Probab=55.15 E-value=2e+02 Score=27.61 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 029859 80 KVLQAQDDLVSNMMEAASKEVLNV 103 (186)
Q Consensus 80 ~~L~aRe~~i~~l~~~a~~kL~~~ 103 (186)
+.|..+..-++....+...+|..+
T Consensus 112 ~~l~~~~~~~~~~~~~~~~~Le~i 135 (508)
T PRK12705 112 KALSARELELEELEKQLDNELYRV 135 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444454554444444445544
No 77
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=54.42 E-value=1.1e+02 Score=24.57 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 37 NIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (186)
Q Consensus 37 ~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~ 95 (186)
..+-..|+.+.+.......+....++..+ .+..+.++|..+-..|...+..+..+
T Consensus 92 ~~ea~~Ii~~A~~~a~~~~e~~~~~a~~e----a~~~~~~A~~~I~~ek~~a~~~l~~~ 146 (184)
T PRK13455 92 QEQADRIVAAAKDEAQAAAEQAKADLEAS----IARRLAAAEDQIASAEAAAVKAVRDR 146 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666666666655555555555433 33445555555555555555544433
No 78
>PRK09098 type III secretion system protein HrpB; Validated
Probab=53.19 E-value=1.4e+02 Score=25.37 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK 58 (186)
Q Consensus 9 qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk 58 (186)
+|..=..-|...|+++|++|-..|.++.+ .|+++.+.+-...|++.
T Consensus 36 ~~~~~~~~ila~Ar~~A~~Il~~A~~~A~----~I~~~A~~e~e~~~~~G 81 (233)
T PRK09098 36 AVHAERDAVLAAARARAERIVAEARAQAE----AILEAARREADRSARRG 81 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 44445567888999999999999999999 88888777655444333
No 79
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=50.63 E-value=1.2e+02 Score=23.73 Aligned_cols=92 Identities=25% Similarity=0.279 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (186)
Q Consensus 17 I~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a 96 (186)
..+.|+.+|.+|...|..+.. .++.+...+.....++...++...=.-.+.. -.-..|.++.+-.+.-|
T Consensus 62 ~L~~A~~ea~~ii~~A~~~a~----~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~-------a~~el~~~~~~lA~~~A 130 (159)
T PRK09173 62 KRKEAEKEAADIVAAAEREAE----ALTAEAKRKTEEYVARRNKLAEQKIAQAETD-------AINAVRSSAVDLAIAAA 130 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 445666667777777776666 4555555444444433222222111111111 12234556666666666
Q ss_pred HHHHHhhccChhHHHHHHHHHHHH
Q 029859 97 SKEVLNVSRDHNSYKKLLKGLIVQ 120 (186)
Q Consensus 97 ~~kL~~~~~~~~~Y~~lLk~LI~q 120 (186)
.+-|..-. |+.....++...|..
T Consensus 131 ~kil~~~l-~~~~~~~li~~~i~~ 153 (159)
T PRK09173 131 EKLLAEKV-DAKAASELFKDALAQ 153 (159)
T ss_pred HHHHHhhc-CHHHHHHHHHHHHHH
Confidence 66665533 444455555555543
No 80
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=48.81 E-value=1.4e+02 Score=24.13 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=5.0
Q ss_pred cHHHHHHHHHH
Q 029859 138 DHHLVESVLES 148 (186)
Q Consensus 138 D~~lV~~~l~~ 148 (186)
|-+-|...+..
T Consensus 167 ~~~~~~~~v~~ 177 (181)
T PRK13454 167 DAAAVDAAVAQ 177 (181)
T ss_pred CHHHHHHHHHH
Confidence 44444444443
No 81
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=47.11 E-value=1.4e+02 Score=23.48 Aligned_cols=53 Identities=2% Similarity=0.173 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASK 98 (186)
Q Consensus 42 ~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a~~ 98 (186)
.|+.+.+......++....++. -.....+.+++..+-..+...+..+..++..
T Consensus 78 ~ii~~A~~~a~~~~~~~~~~A~----~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~ 130 (164)
T PRK14471 78 AILKEAREIKEKMIADAKEEAQ----VEGDKMIEQAKASIESEKNAAMAEIKNQVAN 130 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444443333333322 2233444455555555555555555554433
No 82
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=46.58 E-value=1.4e+02 Score=23.24 Aligned_cols=48 Identities=31% Similarity=0.349 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 029859 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE 63 (186)
Q Consensus 16 FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e 63 (186)
-+.+.|+.+|..|...|..+.+-+..+++.+....+.....+-..+++
T Consensus 66 ~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~ 113 (141)
T PRK08476 66 TILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLA 113 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555556666666666654444444443
No 83
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=45.97 E-value=1.2e+02 Score=22.40 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (186)
Q Consensus 42 ~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~ 95 (186)
.++...+......++....+++. .....++.++-.+-..++.++.++...
T Consensus 69 ~i~~~a~~~a~~~~~~~~~ea~~----~~~~~~~~a~~~i~~e~~~a~~~l~~~ 118 (132)
T PF00430_consen 69 EIIEEAKEEAEKEKEEILAEAEK----EAERIIEQAEAEIEQEKEKAKKELRQE 118 (132)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554442 222334445545555555555554443
No 84
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=45.38 E-value=1.5e+02 Score=23.29 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (186)
Q Consensus 42 ~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a 96 (186)
.|+.+.+.......+....++.. .....+..+|-.+-..|...++.+..++
T Consensus 92 ~ii~~A~~~a~~~~~~~~~~A~~----ea~~~~~~a~~~i~~ek~~a~~~l~~~v 142 (156)
T CHL00118 92 LEITQSQKEAKEIVENELKQAQK----YIDSLLNEATKQLEAQKEKALKSLEEQV 142 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666555555544444444332 2334455555566666666666555554
No 85
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=44.40 E-value=1.6e+02 Score=23.45 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHH
Q 029859 42 QLVEAEKKKIRQEYERKEKQVE 63 (186)
Q Consensus 42 ~lv~~ek~kI~~~~ekk~kq~e 63 (186)
.|+...+.......+....++.
T Consensus 88 ~ii~~A~~~a~~~~~~~~~~A~ 109 (175)
T PRK14472 88 KIIREGKEYAEKLRAEITEKAH 109 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444433333
No 86
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=44.01 E-value=1.4e+02 Score=22.62 Aligned_cols=51 Identities=6% Similarity=0.103 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (186)
Q Consensus 42 ~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a 96 (186)
.|+.+.+......++....++. -.....++.+|-.+...+...++.+...+
T Consensus 75 ~i~~~a~~~a~~~~~~~~~~a~----~ea~~~~~~a~~~i~~e~~~a~~~l~~~v 125 (140)
T PRK07353 75 AVIAEAEAEADKLAAEALAEAQ----AEAQASKEKARREIEQQKQAALAQLEQQV 125 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333333 22334444555555555555554444443
No 87
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=43.74 E-value=1.9e+02 Score=24.89 Aligned_cols=113 Identities=11% Similarity=0.165 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q 029859 40 KLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIV 119 (186)
Q Consensus 40 K~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~ 119 (186)
...++..-+..+...|..+...+...-.- .+..+..+|-.+...| ..+.....+|..+-........-+..|-.
T Consensus 178 ye~~~~~~~~e~e~~y~~k~~~l~~~~~~-~~~~~~~~~~E~~~~r-----~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 178 YEEIAQKNREELEEWYQSKLEELRQQSEK-SSEELESAKEELKELR-----RQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhcccccccccccccc-cccccchhHhHHHHHH-----hhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 33666666667777777776554432211 2222333333332222 22233333333332222234444444443
Q ss_pred HHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhC
Q 029859 120 QSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQ 158 (186)
Q Consensus 120 qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~ 158 (186)
+.-..+..-.-.|.-++..+.-++.-+.....+|...++
T Consensus 252 ~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 252 RLDEEREEYQAEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444555566667777777777877765
No 88
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=43.63 E-value=1.2e+02 Score=23.08 Aligned_cols=42 Identities=7% Similarity=0.211 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 029859 47 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS 90 (186)
Q Consensus 47 ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~ 90 (186)
++.+..++-+++.+..+-.++-..|+...+.|| |+.+.+++-
T Consensus 51 ER~K~E~~~q~r~rES~~Er~K~~~s~~~~q~L--m~rQN~mm~ 92 (121)
T PF10669_consen 51 ERSKKEEKRQKRNRESKRERQKFIWSMNKQQSL--MNRQNNMMK 92 (121)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhHHhhhhHHHHH--HHHHhHHHH
Confidence 777788888888888888888888888888887 777776654
No 89
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=43.23 E-value=1.8e+02 Score=23.50 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 73 QLNASRIKVLQAQDDLVSNMMEAA 96 (186)
Q Consensus 73 ~~n~~Rl~~L~aRe~~i~~l~~~a 96 (186)
.++.+|..+-..|...+..+..++
T Consensus 121 ~~~~a~~~ie~Ek~~a~~~l~~ei 144 (184)
T CHL00019 121 LENYKNETIRFEQQRAINQVRQQV 144 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 90
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=43.18 E-value=1.5e+02 Score=22.73 Aligned_cols=93 Identities=14% Similarity=0.207 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE--RKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS 97 (186)
Q Consensus 20 EA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~e--kk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a~ 97 (186)
.|+..|.+|-..|.+. |.+-+.+.+..-..+.+ |..+..+.++... .-++-....-.++=.++.
T Consensus 13 ~AE~eA~~IV~~AR~~----r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea----------~~~g~~~~~~~~l~~et~ 78 (113)
T TIGR01147 13 QAEKRAAEKVSEARKR----KTKRLKQAKEEAQKEVEKYKQQREKEFKEFEA----------KHLGGNGAAEEKAEAETQ 78 (113)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHcCCcchHHHHHHHHHH
Confidence 5888999999988853 33555555544333321 2333334443333 233444556667777888
Q ss_pred HHHHhhccChhHHHHHHHHHHHHHHHhcC
Q 029859 98 KEVLNVSRDHNSYKKLLKGLIVQSLLRLK 126 (186)
Q Consensus 98 ~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~ 126 (186)
.+|..+-..-...+.-+.++++..++...
T Consensus 79 ~ki~~ik~~~~~~~~~Vv~~Ll~~V~~v~ 107 (113)
T TIGR01147 79 AKIREIKKAVQKNKDAVIKDLLHLVCDIS 107 (113)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCCC
Confidence 88888765555667777777777776655
No 91
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=41.29 E-value=1.1e+02 Score=20.58 Aligned_cols=51 Identities=14% Similarity=0.323 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHH
Q 029859 87 DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 146 (186)
Q Consensus 87 ~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l 146 (186)
..|..++...-..|..++.+. .|+.-...|+.+=|-.+.+ ..|++.++..|
T Consensus 5 ~~L~~lY~~~L~~L~~~P~~a-~YR~~tE~it~~Rl~iv~~--------~~d~~~iE~~i 55 (57)
T PF04716_consen 5 EALISLYNKTLKALKKIPEDA-AYRQYTEAITKHRLKIVEE--------EEDIEKIEKKI 55 (57)
T ss_pred HHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHc--------cccHHHHHHHh
Confidence 346678899999999999886 7999999999887666555 56777777654
No 92
>PF04867 DUF643: Protein of unknown function (DUF643); InterPro: IPR006951 These are proteins of unknown function found in Borrelia burgdorferi (Lyme disease spirochete)
Probab=37.78 E-value=1.8e+02 Score=22.20 Aligned_cols=66 Identities=18% Similarity=0.368 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Q 029859 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQ-LNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDH 107 (186)
Q Consensus 42 ~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~-~n~~Rl~~L~aRe~~i~~l~~~a~~kL~~~~~~~ 107 (186)
.|-..-+-.|..-|.-..-..+++++|=++-. +-+...+.=+.=+++|+++++-+++=+..+.+|.
T Consensus 10 nL~~~tKKei~kLY~t~Q~TleqKrqiYs~y~~~QeykrKtGKSi~eiind~l~p~k~fIkdvLKdk 76 (114)
T PF04867_consen 10 NLSKETKKEINKLYGTDQLTLEQKRQIYSAYEAIQEYKRKTGKSINEIINDILDPAKKFIKDVLKDK 76 (114)
T ss_pred ccCHhHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHhhHHHHHHHHHHhhh
Confidence 34444555677777766666666666654432 3444556666778999999999988888887774
No 93
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=33.21 E-value=2.6e+02 Score=22.49 Aligned_cols=23 Identities=0% Similarity=-0.023 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029859 74 LNASRIKVLQAQDDLVSNMMEAA 96 (186)
Q Consensus 74 ~n~~Rl~~L~aRe~~i~~l~~~a 96 (186)
+..+|-.+-..|...+.++.+++
T Consensus 102 ~~~A~~~Ie~Ek~~Al~elr~ev 124 (154)
T PRK06568 102 KSDAIQLIQNQKSTASKELQDEF 124 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556665555555544
No 94
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=32.69 E-value=87 Score=24.85 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=29.2
Q ss_pred CCceEEeeccccHHHHHHHHHHHHHHHHHHhCC
Q 029859 127 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV 159 (186)
Q Consensus 127 e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~ 159 (186)
...++|+|--.+...++.+|.+|...|.+....
T Consensus 127 ~e~l~l~~lg~s~~~l~~ll~ear~~~~~~~~~ 159 (187)
T PF08740_consen 127 DETLTLSCLGRSPKPLKDLLEEAREYYLKKQKG 159 (187)
T ss_pred ceEEEEEEecCCHHHHHHHHHHHHHHHHHhcCC
Confidence 458999999999999999999999999776554
No 95
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=32.60 E-value=4.3e+02 Score=24.92 Aligned_cols=84 Identities=26% Similarity=0.312 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-----cChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHH
Q 029859 80 KVLQAQDDLVSNMMEAASKEVLNVS-----RDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA 154 (186)
Q Consensus 80 ~~L~aRe~~i~~l~~~a~~kL~~~~-----~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~ 154 (186)
..|..-+.+.+++..+..-++.+++ .+. .-++.++...|-.+.++--+|+|-.-|.+.| +--.|.+.+.
T Consensus 109 ~~ld~~d~~yeEikt~~~lki~K~~F~~fla~~----~n~k~~l~~~L~~~~~~V~IvyCDgvDAEFv--MC~~Ak~~a~ 182 (425)
T PF04599_consen 109 KNLDVDDEFYEEIKTDLELKIQKLSFQLFLANS----NNLKTILESSLSRLKEDVEIVYCDGVDAEFV--MCARAKKLAA 182 (425)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHHHhcch----hhHHHHHHHHHHhccCCceEEEECCcChhHH--HHHHHHHHHH
Confidence 5566667777777777777776642 222 4467777777888878878899999999998 7777777654
Q ss_pred HHhCCCCCeEeeccCC
Q 029859 155 QKLQVHPPEIIVDHHI 170 (186)
Q Consensus 155 ~~~~~~~~~i~id~~~ 170 (186)
.+|.=|.=|+-|++.
T Consensus 183 -~~g~WPlliStDQDt 197 (425)
T PF04599_consen 183 -KNGRWPLLISTDQDT 197 (425)
T ss_pred -hcCCCceEEeeccce
Confidence 455434566666643
No 96
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=31.86 E-value=2.6e+02 Score=22.18 Aligned_cols=38 Identities=34% Similarity=0.526 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (186)
Q Consensus 12 kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~ 53 (186)
.|++-=..+|+..++++...|+++.+ ++.......|..
T Consensus 76 ~Ii~~A~~~a~~~~~e~~~~a~~e~~----r~~~~a~~~I~~ 113 (161)
T COG0711 76 EIIEQAKKEAEQIAEEIKAEAEEELE----RIKEAAEAEIEA 113 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 33333333333333344444444433 444444444443
No 97
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=31.22 E-value=2.5e+02 Score=21.84 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (186)
Q Consensus 42 ~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a 96 (186)
.|+.+.+......++.-..++. -.....+..+|-.+-..+...+..+..++
T Consensus 75 ~ii~~a~~~a~~~~~~i~~~A~----~ea~~~~~~a~~~i~~e~~~a~~~l~~ei 125 (159)
T PRK13461 75 KIVEEYKSKAENVYEEIVKEAH----EEADLIIERAKLEAQREKEKAEYEIKNQA 125 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454444444444433333333 22334445555555555555555554444
No 98
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=31.09 E-value=2.9e+02 Score=22.53 Aligned_cols=91 Identities=12% Similarity=0.218 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhccChhHHHHHHHHHHH-----HHHHhcCCCceEEee
Q 029859 73 QLNASRIKVLQAQDDLVSNM-------------MEAASKEVLNVSRDHNSYKKLLKGLIV-----QSLLRLKEPAVLLRC 134 (186)
Q Consensus 73 ~~n~~Rl~~L~aRe~~i~~l-------------~~~a~~kL~~~~~~~~~Y~~lLk~LI~-----qgl~~L~e~~v~V~~ 134 (186)
...++||.+=+.|.+.++.+ ..+|.++|..+.... .-...+..||. .++..+.++.|.|.|
T Consensus 87 ~f~~~rl~Re~~r~~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~~~~-~kE~~iE~llkakGf~davv~~~~~~v~VvV 165 (196)
T PF12685_consen 87 YFAEARLEREQSRSKQIETLKEIINNENASEEEKKEAQDKLLELTEKM-EKEMEIENLLKAKGFEDAVVFIEDDSVDVVV 165 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTS-SEEEEE-SSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCceEEEeeCCEEEEEE
Confidence 35555665555555555444 456677777776553 34455566665 345567777888888
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhCCCCCeEee
Q 029859 135 RKDDHHLVESVLESAKEEYAQKLQVHPPEIIV 166 (186)
Q Consensus 135 rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~i 166 (186)
.... |=..-...+.......+|.+...|+|
T Consensus 166 ~~~~--L~~~~~~~I~diV~~~~~v~~~~I~V 195 (196)
T PF12685_consen 166 KADK--LSDAEAAQIIDIVMRETGVPAENISV 195 (196)
T ss_dssp E-S-----HHHHHHHHHHHHHHHC-STSEEEE
T ss_pred eCCC--CCHHHHHHHHHHHHHHhCCCcCeEEe
Confidence 7766 33444555666667778855456654
No 99
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=30.99 E-value=2.4e+02 Score=21.56 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=47.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q 029859 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (186)
Q Consensus 1 m~d~ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~ 80 (186)
|++.+|-+.|+ .|+..|++....|.++.+ ++|...+.+-+...++-+..+... .--.++.+|-.
T Consensus 3 m~~~Evl~eIk--------~aE~~ad~~IeeAkEe~~----~~i~eAr~eareiieeaE~eA~~~----~~e~l~~~~ee 66 (108)
T COG2811 3 MDDSEVLREIK--------KAEISADEEIEEAKEEAE----QIIKEAREEAREIIEEAEEEAEKL----AQEILEEAREE 66 (108)
T ss_pred ccHHHHHHHHH--------HHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 45566666655 466666666666666666 666665554333333322222211 22456677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 029859 81 VLQAQDDLVSNMMEAASKEVLN 102 (186)
Q Consensus 81 ~L~aRe~~i~~l~~~a~~kL~~ 102 (186)
....|++++.+--.++..=+.+
T Consensus 67 ~e~ea~eI~~~ae~~~~~~~~k 88 (108)
T COG2811 67 AEEEAEEILAEAEKEASAILSK 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666555555444443
No 100
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=29.56 E-value=2.6e+02 Score=21.35 Aligned_cols=32 Identities=22% Similarity=-0.017 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEA 46 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ 46 (186)
.-+-.||.+|-.+=-.+.+++..-..+..+..
T Consensus 34 e~~iKEa~~k~ee~~~kteeE~~~~Y~~~l~e 65 (111)
T PRK06397 34 ENEIKEAKSKYEEKAKKTEEESLNMYNAALME 65 (111)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444555555554455555555444444433
No 101
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=29.54 E-value=3.9e+02 Score=24.90 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (186)
Q Consensus 9 qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~ 52 (186)
+..-...-++.+|-.+++|+..+--..|+.|++.+.+..+....
T Consensus 81 ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K~k~~~ 124 (424)
T KOG2880|consen 81 EKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSKKKNLA 124 (424)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHhhhHH
Confidence 34445556679999999999999999999998888776655433
No 102
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=28.56 E-value=2.8e+02 Score=21.47 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 24 KANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (186)
Q Consensus 24 KA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~ 95 (186)
..+++-..|..+.. .++.....+...++++...++. ......+..++-.+-..+.++...+-.+
T Consensus 63 e~e~~l~~Ar~eA~----~~~~~a~~~A~~ea~~~~~~A~----~~~~~~~~~a~~~l~~e~~~~~~~l~~q 126 (141)
T PRK08476 63 EIETILKNAREEAN----KIRQKAIAKAKEEAEKKIEAKK----AELESKYEAFAKQLANQKQELKEQLLSQ 126 (141)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444545544 3444444444444443333332 2233444555555555555555444443
No 103
>PRK06418 transcription elongation factor NusA-like protein; Validated
Probab=28.16 E-value=63 Score=26.46 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHH-------HhcCCCceE-EeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEee
Q 029859 109 SYKKLLKGLIVQSL-------LRLKEPAVL-LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIV 166 (186)
Q Consensus 109 ~Y~~lLk~LI~qgl-------~~L~e~~v~-V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~i 166 (186)
.=+.++++|+.=+- ..-.+..++ |++...|...+..-++.....|+++||.+ +.+.+
T Consensus 101 d~~~fl~Nl~~PA~V~gV~i~~~~dG~~~~kV~Vd~~Dk~~l~~k~e~~~~v~~kltgk~-v~~~f 165 (166)
T PRK06418 101 DIKKLAVQLLSPARVLGVNTVWLPDGTVQYVIRVSRRDRRRLPAKPELLESILSKITGTE-VKIRV 165 (166)
T ss_pred CHHHHHHhcCCCcEEEEEEEEEeCCCcEEEEEEECHHHhhcccccHHHHHHHHHHHHCCc-EEEEe
Confidence 34577777765332 223445666 89999999999999999999999999998 67754
No 104
>PRK12705 hypothetical protein; Provisional
Probab=27.80 E-value=5.5e+02 Score=24.65 Aligned_cols=29 Identities=21% Similarity=0.046 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 15 RFIRQEAEEKANEISVSAEEEFNIEKLQL 43 (186)
Q Consensus 15 ~FI~qEA~eKA~EI~~kA~eef~iEK~~l 43 (186)
.-+.-+|++++...+..++++++-.+..+
T Consensus 51 ~~~~~~~~~~~~~~~~~~e~e~~~~~~~~ 79 (508)
T PRK12705 51 EAALLEAKELLLRERNQQRQEARREREEL 79 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555444433
No 105
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=26.01 E-value=3e+02 Score=20.96 Aligned_cols=50 Identities=8% Similarity=0.116 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029859 40 KLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (186)
Q Consensus 40 K~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~ 93 (186)
-..|+.+.+......++.-..++... ....+..++..+-..|...+..+.
T Consensus 63 a~~i~~~a~~~a~~~~~~~~~~a~~e----~~~~~~~a~~~i~~e~~~a~~~l~ 112 (147)
T TIGR01144 63 AQEIIENANKRGSEILEEAKAEAREE----REKIKAQARAEIEAEKEQAREELR 112 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33777777766666666655555533 223344444444444444444443
No 106
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=25.79 E-value=2.6e+02 Score=21.53 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 2 NDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (186)
Q Consensus 2 ~d~ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~ 37 (186)
+|.++..-+..+-+-+..+|..||..|-.+=..|.+
T Consensus 12 ~d~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIk 47 (109)
T PHA02571 12 TDEEVEELLSELQARNEAEAEKKAAKILKKNRREIK 47 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 456677777888888888888888776655544433
No 107
>PRK15322 invasion protein OrgB; Provisional
Probab=24.55 E-value=4.5e+02 Score=22.47 Aligned_cols=97 Identities=16% Similarity=0.095 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 029859 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM 92 (186)
Q Consensus 13 Mv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l 92 (186)
-..-+.+.|+.+|.+|-..|++|.+ .|-.... ..-|...+.|+... +-..+-..=.-+-++++.|
T Consensus 13 ~a~~l~~qA~~kA~~ii~qA~~eaE----~ir~~A~---~~GYq~Gl~qa~~~--------la~~~a~~~~l~~~l~~~i 77 (210)
T PRK15322 13 SAERLEQQARRRAKRILRQAEEEAE----TLRMYAY---QEGYEQGMIDALQQ--------VAAYLTDNQTMAWKWMEKI 77 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999888 5555443 36777776665422 2222222222233667777
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCC
Q 029859 93 MEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP 128 (186)
Q Consensus 93 ~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~ 128 (186)
-+.++.-|.....+++ +|-.+..+=+-++.-+
T Consensus 78 e~~~r~lls~~Ld~pd----~LL~~le~Wl~~l~~~ 109 (210)
T PRK15322 78 QIYARELFSAAVDHPE----TLLTVLDEWLRDFDKP 109 (210)
T ss_pred HHHHHHHHHHHccCHH----HHHHHHHHHHHhCccc
Confidence 7777777777777763 5555555545544443
No 108
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=24.52 E-value=4.1e+02 Score=22.07 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 029859 44 VEAEKKKIRQEYERKEKQVEIR 65 (186)
Q Consensus 44 v~~ek~kI~~~~ekk~kq~e~~ 65 (186)
...+-.+....|+.++.++..+
T Consensus 99 ~k~eAe~~~~~ye~~L~~Ar~e 120 (204)
T PRK09174 99 LKQEADAAVAAYEQELAQARAK 120 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666665544
No 109
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=24.48 E-value=58 Score=22.12 Aligned_cols=58 Identities=14% Similarity=0.286 Sum_probs=38.7
Q ss_pred HhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hhccChhHHHHHHHHHHHHHHHhcCC
Q 029859 70 YSMQLNASRIKVLQAQDD-LVSNMMEAASKEVL-NVSRDHNSYKKLLKGLIVQSLLRLKE 127 (186)
Q Consensus 70 ~S~~~n~~Rl~~L~aRe~-~i~~l~~~a~~kL~-~~~~~~~~Y~~lLk~LI~qgl~~L~e 127 (186)
++..+.++=.++|+.+.. ..++|+..+.+.|. .++-+....+.-+..||.++.++-.+
T Consensus 5 R~~~I~AaIVrimK~~k~~~~~~L~~~v~~~l~~~f~~~~~~ik~~Ie~LIekeyi~Rd~ 64 (68)
T PF10557_consen 5 RKYQIDAAIVRIMKQEKKLSHDELINEVIEELKKRFPPSVSDIKKRIESLIEKEYIERDE 64 (68)
T ss_dssp HHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHTTTTS---HHHHHHHHHHHHHTTSEEEES
T ss_pred hhhhhhhheehhhhhcCceeHHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhhhhhcCC
Confidence 455566666678877654 35677788877887 45666667888888888887665443
No 110
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=24.30 E-value=3.3e+02 Score=20.88 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEV 100 (186)
Q Consensus 21 A~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i~~l~~~a~~kL 100 (186)
+--+|.+|-..|.++.+ +|+.+...+....++... ..-..+.+-.... .+.....++..-+
T Consensus 11 ~~~~A~~il~~A~~~a~----~i~~~A~~~~e~~~~~g~-----------~~G~~~g~~e~~~----~~~~~~~~~~~~~ 71 (166)
T TIGR02499 11 ALAQAQAILAAARQRAE----AILADAEEEAEASRQLGY-----------EQGLEQFWQEAAA----QLAEWQQEAEQLE 71 (166)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 34489999999999998 888887765544221111 1111111111100 1111111111111
Q ss_pred HhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeecc
Q 029859 101 LNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH 168 (186)
Q Consensus 101 ~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~ 168 (186)
..-..-|..|+.+.+.++.+.. .|-+++..++..+...... ...++|.+.+
T Consensus 72 -------~~~e~~l~~l~~~~~~kil~~~-------~~~e~l~~lv~~al~~~~~---~~~v~I~v~P 122 (166)
T TIGR02499 72 -------ASLEERLAELVLQALEQILGEY-------DEPERLVRLLRQLLRAVAN---QGRLTLRVHP 122 (166)
T ss_pred -------HHHHHHHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHHhCCC---CCceEEEECH
Confidence 1223456688889999888874 5667787888777766544 1124555544
No 111
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=23.30 E-value=3.7e+02 Score=21.04 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHH
Q 029859 114 LKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLES 148 (186)
Q Consensus 114 Lk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~ 148 (186)
+.+|.++..-++.+.++ -.+.+..+|...|.+
T Consensus 128 i~~la~~~a~kil~~~l---~~~~~~~li~~~i~~ 159 (164)
T PRK14473 128 IADLVTLTASRVLGAEL---QARGHDALIAESLAA 159 (164)
T ss_pred HHHHHHHHHHHHHHhHc---CHHHHHHHHHHHHHh
Confidence 34455566666666554 234445555555543
No 112
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=21.19 E-value=2.7e+02 Score=18.77 Aligned_cols=41 Identities=17% Similarity=0.473 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (186)
Q Consensus 9 qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~ 53 (186)
-|.+-++-.+.--++|-.||...-..||+ +|+.+....+.+
T Consensus 8 ~~d~yI~~Lk~kLd~Kk~Eil~~ln~EY~----kiLk~r~~~lEe 48 (56)
T PF08112_consen 8 TIDKYISILKSKLDEKKSEILSNLNMEYE----KILKQRRKELEE 48 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 46677777888888999999988888888 887776666553
Done!