Query 029859
Match_columns 186
No_of_seqs 114 out of 340
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:13:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_E V-type proton ATPase su 100.0 3.1E-44 1.1E-48 301.1 24.8 175 1-175 8-182 (233)
2 3v6i_A V-type ATP synthase sub 99.8 8.8E-18 3E-22 136.0 20.4 131 12-148 2-136 (187)
3 2dm9_A V-type ATP synthase sub 99.8 1.3E-19 4.3E-24 145.1 7.7 145 5-168 10-154 (198)
4 3lg8_A A-type ATP synthase sub 99.2 4.2E-13 1.4E-17 100.4 -2.4 60 108-168 3-63 (106)
5 2kk7_A V-type ATP synthase sub 94.6 0.14 4.8E-06 33.1 6.7 40 10-53 8-47 (52)
6 3v6i_A V-type ATP synthase sub 92.8 2.8 9.6E-05 32.8 14.0 97 6-102 7-116 (187)
7 2dm9_A V-type ATP synthase sub 89.5 0.11 3.7E-06 40.4 1.2 125 10-168 4-128 (198)
8 1l2p_A ATP synthase B chain; a 84.0 6.4 0.00022 25.2 8.7 12 42-53 39-50 (61)
9 2kk7_A V-type ATP synthase sub 72.8 4.7 0.00016 25.7 3.9 35 5-39 14-48 (52)
10 1l2p_A ATP synthase B chain; a 60.4 29 0.001 21.9 9.0 52 17-68 3-54 (61)
11 2k6i_A Uncharacterized protein 59.9 20 0.00067 23.5 4.9 28 20-51 23-50 (56)
12 4efa_G V-type proton ATPase su 40.1 79 0.0027 23.3 6.2 31 20-54 17-47 (119)
13 3m91_A Proteasome-associated A 38.8 58 0.002 20.6 4.6 29 76-104 15-43 (51)
14 3u5c_H RP30, RP40, 40S ribosom 31.3 37 0.0013 27.3 3.3 59 109-168 121-187 (190)
15 3o2p_E Cell division control p 25.8 1E+02 0.0034 21.5 4.5 57 72-128 22-80 (88)
16 2qdq_A Talin-1; dimerisation d 22.7 68 0.0023 20.4 2.7 31 80-112 9-41 (50)
17 2xzm_3 RPS7E, 40S ribosomal pr 22.0 1.1E+02 0.0039 24.6 4.6 57 110-167 123-187 (197)
18 3fx7_A Putative uncharacterize 20.6 1.3E+02 0.0044 21.5 4.2 34 86-119 47-80 (94)
No 1
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=100.00 E-value=3.1e-44 Score=301.09 Aligned_cols=175 Identities=33% Similarity=0.539 Sum_probs=166.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q 029859 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (186)
Q Consensus 1 m~d~ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~ 80 (186)
|||+||++||++|++||++||++||+||..+|++||+++|+++|++++.+|+..|++++++++++++|..|+..|++|++
T Consensus 8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~ 87 (233)
T 4efa_E 8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK 87 (233)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029859 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH 160 (186)
Q Consensus 81 ~L~aRe~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~ 160 (186)
+|.+|+++|+++|+.|+++|..+++|+..|+.+|.+||.||++.|++|+|+|+||+.|.++|+++++++..+|+..+|..
T Consensus 88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~ 167 (233)
T 4efa_E 88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRA 167 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCeEeeccCCCCCCC
Q 029859 161 PPEIIVDHHIYLPPG 175 (186)
Q Consensus 161 ~~~i~id~~~~L~~~ 175 (186)
++...++...|||++
T Consensus 168 ~~~~~~~~~~~l~~~ 182 (233)
T 4efa_E 168 PLEEIVISNDYLNKD 182 (233)
T ss_dssp CCCEEEECSSCCCTT
T ss_pred CccccccccccCCcc
Confidence 433344445777655
No 2
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=99.80 E-value=8.8e-18 Score=135.98 Aligned_cols=131 Identities=12% Similarity=0.184 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 029859 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ----VEIRKKIEYSMQLNASRIKVLQAQDD 87 (186)
Q Consensus 12 kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq----~e~~k~I~~S~~~n~~Rl~~L~aRe~ 87 (186)
+..+-|..||+.+|++|...|+++.+ .|+.+.+.+....++...+. ......+..|+..+++|+++|.+|++
T Consensus 2 ~~~~~l~~eA~~~a~~I~~eA~~~a~----~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e 77 (187)
T 3v6i_A 2 KLEAILSQEVEAEIQALLQEAEAKAE----AVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE 77 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899999999988888888 88888887776666555444 44446677999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHH
Q 029859 88 LVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLES 148 (186)
Q Consensus 88 ~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~ 148 (186)
+|+++|+.|+++|..++.+ ..|+.+|.+||.+|+..|++|.++| ||+.|.++|++++++
T Consensus 78 li~~v~~~a~~~L~~~~~~-~~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~ 136 (187)
T 3v6i_A 78 VLEEVRRRVREALEALPQK-PEWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE 136 (187)
T ss_dssp HHHHHHHHHHHHHHHGGGS-TTHHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh
Confidence 9999999999999999988 4799999999999999999999977 999999999988875
No 3
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=99.79 E-value=1.3e-19 Score=145.11 Aligned_cols=145 Identities=21% Similarity=0.318 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Q 029859 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA 84 (186)
Q Consensus 5 ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~a 84 (186)
++-.+.+.|.+||.++|+++|++|..+|.++|+.++.+++++.. ++++..+++..|+..++.|..+|.+
T Consensus 10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~-----------~e~~~~~~~~~s~~~~~~r~~~l~~ 78 (198)
T 2dm9_A 10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAK-----------TQAELEKQRIIANARLEVRRKRLAI 78 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999999999999999998874 4566678888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 029859 85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEI 164 (186)
Q Consensus 85 Re~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i 164 (186)
|+++++.++..|++.|..++ +..|+.+|.+||.+|+..+.++.|+|+|++.|+++|++.++.+...|. + +.+
T Consensus 79 ~~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~---~---~~l 150 (198)
T 2dm9_A 79 QEEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG---D---VSI 150 (198)
T ss_dssp --CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT---T---CEE
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc---C---ceE
Confidence 99999999999999999965 458999999999999999999999999999999999999999988885 2 577
Q ss_pred eecc
Q 029859 165 IVDH 168 (186)
Q Consensus 165 ~id~ 168 (186)
+|+.
T Consensus 151 ~i~~ 154 (198)
T 2dm9_A 151 ELGE 154 (198)
T ss_dssp EECC
T ss_pred EECC
Confidence 7764
No 4
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=99.21 E-value=4.2e-13 Score=100.41 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHH-HHHHHHHHHHHhCCCCCeEeecc
Q 029859 108 NSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDH 168 (186)
Q Consensus 108 ~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~-l~~~~~~y~~~~~~~~~~i~id~ 168 (186)
++|+++|++||+||++.|++|+|+|+||+.|.++|+++ ++++.++|++++|.+ +++++|+
T Consensus 3 ~~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~~-~~v~~~~ 63 (106)
T 3lg8_A 3 PEYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKKV-TVLKKGE 63 (106)
T ss_dssp CSTTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSSC-CCCCCCC
T ss_pred cHHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCCe-EEEEeCC
Confidence 37999999999999999999999999999999999999 999999999999987 6777764
No 5
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=94.62 E-value=0.14 Score=33.08 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (186)
Q Consensus 10 i~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~ 53 (186)
+..+++-|..+|+.+|+.|...|+.+.+ .|+.+...+...
T Consensus 8 le~i~~kI~~eA~~eA~~Il~eA~~eA~----~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 8 VDKIKSKILDDAKAEANKIISEAEAEKA----KILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 6789999999999999999999999999 888887766553
No 6
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=92.79 E-value=2.8 Score=32.77 Aligned_cols=97 Identities=19% Similarity=0.146 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--------HHHHHH
Q 029859 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYS--------MQLNAS 77 (186)
Q Consensus 6 v~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S--------~~~n~~ 77 (186)
...+-+.-.+-|..+|+.+|++|...|+++..-.+..+.......+...+++....+.++.+...- ...+.+
T Consensus 7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a 86 (187)
T 3v6i_A 7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRV 86 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667789999999999999999999998888888887777777777777666665433322 233444
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHh
Q 029859 78 RIKVLQ-----AQDDLVSNMMEAASKEVLN 102 (186)
Q Consensus 78 Rl~~L~-----aRe~~i~~l~~~a~~kL~~ 102 (186)
|-++.+ ...++|..++.++...|..
T Consensus 87 ~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~~ 116 (187)
T 3v6i_A 87 REALEALPQKPEWPEVVRKLALEALEALPG 116 (187)
T ss_dssp HHHHHHGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhhCCccHHHHHHHHHHHHHHHcCC
Confidence 433222 2457888888887766643
No 7
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=89.51 E-value=0.11 Score=40.42 Aligned_cols=125 Identities=14% Similarity=0.219 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 029859 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (186)
Q Consensus 10 i~kMv~FI~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I~~S~~~n~~Rl~~L~aRe~~i 89 (186)
+..++.-|..+|+.+|.+|...|.++.+ .|+.+...+...++.+-..+.. -..-..+...+
T Consensus 4 le~l~~~il~~A~~~a~~il~eA~~~a~----~i~~~a~~e~~~~~~~~~~~a~---------------~e~~~~~~~~~ 64 (198)
T 2dm9_A 4 AELIIQEINKEAERKIEYILNEARQQAE----KIKEEARRNAEAKAEWIIRRAK---------------TQAELEKQRII 64 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Confidence 5678999999999999999999999999 8888877766654444443332 22223344445
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeecc
Q 029859 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH 168 (186)
Q Consensus 90 ~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~qgl~~L~e~~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~ 168 (186)
..+..+++..+...- .-+.+++..++.+.... + +.....+++.+++.++...+ +...+.|.+++
T Consensus 65 s~~~~~~r~~~l~~~-------~ev~~~~~~~a~~~l~~-l---~~~~y~~~l~~li~e~~~~~----~~~~v~i~v~~ 128 (198)
T 2dm9_A 65 ANARLEVRRKRLAIQ-------EEIISSVLEEVKRRLET-M---SEDEYFESVKALLKEAIKEL----NEKKVRVMSNE 128 (198)
T ss_dssp -----------------------CHHHHHHHHHHHHHHH-C---CHHHHHHHHHHHHHHHHHHH----TCSEEEEECCH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh-c---CHHHHHHHHHHHHHHHHHHc----CCCCEEEEECH
Confidence 555555555554432 22233333333332222 2 12334677778877777665 32224566543
No 8
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=83.98 E-value=6.4 Score=25.19 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 029859 42 QLVEAEKKKIRQ 53 (186)
Q Consensus 42 ~lv~~ek~kI~~ 53 (186)
+|+.+.+..|..
T Consensus 39 ~i~~~A~~eie~ 50 (61)
T 1l2p_A 39 KIVAQAQAEIEA 50 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555444444
No 9
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=72.83 E-value=4.7 Score=25.70 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIE 39 (186)
Q Consensus 5 ev~~qi~kMv~FI~qEA~eKA~EI~~kA~eef~iE 39 (186)
++..+-+.=..-|..+|+.+|++|...|..+.+-.
T Consensus 14 kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~~ 48 (52)
T 2kk7_A 14 KILDDAKAEANKIISEAEAEKAKILEKAKEEAEKR 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677889999999999999998887633
No 10
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=60.41 E-value=29 Score=21.91 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 029859 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKI 68 (186)
Q Consensus 17 I~qEA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~~ekk~kq~e~~k~I 68 (186)
.+.+|+..|.+|...|....+-....++.+.........+.-..+++.++.-
T Consensus 3 ~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~ 54 (61)
T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKR 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888886666666666655555555555555544433
No 11
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=59.89 E-value=20 Score=23.47 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKI 51 (186)
Q Consensus 20 EA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI 51 (186)
+|+.+|.+|..+|.++.+ .|+...+.+.
T Consensus 23 eAE~~A~~iVeeA~~ea~----~ii~eAreeA 50 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAE----QIKAEAIEEA 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 677788888888887777 6666655443
No 12
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=40.13 E-value=79 Score=23.31 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029859 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQE 54 (186)
Q Consensus 20 EA~eKA~EI~~kA~eef~iEK~~lv~~ek~kI~~~ 54 (186)
.|+..|.+|-..|... |.+-+.+.+..-..+
T Consensus 17 ~AEk~A~~iV~~ARk~----k~~rLKqAK~EA~~E 47 (119)
T 4efa_G 17 QAEKEAHEIVSKARKY----RQDKLKQAKTDAAKE 47 (119)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 6899999999988875 446777766654443
No 13
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.82 E-value=58 Score=20.64 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029859 76 ASRIKVLQAQDDLVSNMMEAASKEVLNVS 104 (186)
Q Consensus 76 ~~Rl~~L~aRe~~i~~l~~~a~~kL~~~~ 104 (186)
++++.-|.+|.+-|-..+.+|+.+|..+.
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999998763
No 14
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=31.28 E-value=37 Score=27.35 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHH-------HHhcCCCc-eEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeecc
Q 029859 109 SYKKLLKGLIVQS-------LLRLKEPA-VLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH 168 (186)
Q Consensus 109 ~Y~~lLk~LI~qg-------l~~L~e~~-v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~ 168 (186)
-|..+|.+|+-=+ .+.+.+.. +-|+.-+.|...|+.-++.....|+..||.+ ++..+..
T Consensus 121 VhdaiLeDLv~P~eIVGKRir~rlDGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgkd-v~FeFp~ 187 (190)
T 3u5c_H 121 VHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQ-IVFEIPS 187 (190)
T ss_dssp HHHHHHHHHSCSSCEEEEEEEECSSSCEEEEEEECSSSTHHHHTTHHHHHHHHHHHHSCE-EEEECCC
T ss_pred HHHHHHhhcccchheeeeEEEEecCCCEEEEEEECHHHhcccchhhHHHHHHHHHhhCCc-EEEEecC
Confidence 4666666665321 23444443 5577788999999999999999999999998 6776643
No 15
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=25.77 E-value=1e+02 Score=21.47 Aligned_cols=57 Identities=14% Similarity=0.290 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-hccChhHHHHHHHHHHHHHHHhcCCC
Q 029859 72 MQLNASRIKVLQAQDDL-VSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQSLLRLKEP 128 (186)
Q Consensus 72 ~~~n~~Rl~~L~aRe~~-i~~l~~~a~~kL~~-~~~~~~~Y~~lLk~LI~qgl~~L~e~ 128 (186)
..+.++=.++|++|..+ -++|+.++.+.|.. ++.+....++-+..||..+.+.=.++
T Consensus 22 ~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~ 80 (88)
T 3o2p_E 22 IFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDD 80 (88)
T ss_dssp HHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred hhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCC
Confidence 44566667899998543 34566666667764 57777789999999998776655544
No 16
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=22.72 E-value=68 Score=20.40 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=20.4
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHhhccChhHHHH
Q 029859 80 KVLQAQDDLVS--NMMEAASKEVLNVSRDHNSYKK 112 (186)
Q Consensus 80 ~~L~aRe~~i~--~l~~~a~~kL~~~~~~~~~Y~~ 112 (186)
+.|++|+.+|. .=+++|+.+|..+-.. +|+.
T Consensus 9 qEi~Aqe~iLr~ErELEeAr~~La~iR~~--kY~~ 41 (50)
T 2qdq_A 9 QIIAAQEEMLRKERELEEARKKLAQIRQQ--QYKF 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhc
Confidence 56667777663 4578999999988654 6775
No 17
>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3
Probab=21.97 E-value=1.1e+02 Score=24.55 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHH-------HHhcCCC-ceEEeeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeec
Q 029859 110 YKKLLKGLIVQS-------LLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD 167 (186)
Q Consensus 110 Y~~lLk~LI~qg-------l~~L~e~-~v~V~~rk~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id 167 (186)
|..+|.+|+-=+ .+.+.+. -+.|+.-+.|...|+.-++.....|+.+||.+ +++.+.
T Consensus 123 ~~aiLeDLv~PaeIvGkRir~~~DGs~~~KV~Ld~~d~~~ve~Kletf~~VykkLTGkd-V~feFp 187 (197)
T 2xzm_3 123 YDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYKTVTTRE-VTFEFK 187 (197)
T ss_dssp HHHHHHHHSTTSCCSEEEEEECSSSCEECCEEEESTTHHHHHHHHHHHHHHHHHHSCCB-CCEEEE
T ss_pred HHHHHHHhccchheeeeEEEEecCCCEEEEEEeCHHHhcccccchHHHHHHHHHHhCCC-EEEEEc
Confidence 566666665422 1233333 34677788999999999999999999999998 688764
No 18
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=20.58 E-value=1.3e+02 Score=21.46 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q 029859 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIV 119 (186)
Q Consensus 86 e~~i~~l~~~a~~kL~~~~~~~~~Y~~lLk~LI~ 119 (186)
..-..++|++..+.|.....+...|-+.|+.+|.
T Consensus 47 r~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~ 80 (94)
T 3fx7_A 47 RDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIR 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 3456788889999999988777899999999885
Done!