BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029860
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GR35|F206A_XENLA Protein FAM206A OS=Xenopus laevis GN=fam206a PE=2 SV=1
Length = 183
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 4/159 (2%)
Query: 21 LTPPSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN 79
L PS +D F ++ PD KP D + +H+N +C+I LA H ++E I ++ +
Sbjct: 8 LAFPSVVDRYFTRWYKPDIKGKPCEDHCILQHSNRICIITLAECHPLLQNEKTIKSISYQ 67
Query: 80 VGKS-DRSGFKVTGKRKKQNAQHFESNTAVCKVC-TNNDSYIVRCCVKGSLLEVNNRLIK 137
+ + R KV+GK K+ AQ +C++ T+ + Y + C++G LLEVN +++
Sbjct: 68 ISANCSRLQNKVSGKSKR-GAQFLTELAPLCRISSTDGEEYTIYSCIRGRLLEVNENILQ 126
Query: 138 QPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 176
PGLL EGYIA+++PK + I LL +Y+
Sbjct: 127 NPGLLKEKPSTEGYIAVVLPKFEESKTITEGLLSQREYE 165
>sp|Q80ZQ9|F206A_MOUSE Protein FAM206A OS=Mus musculus GN=Fam206a PE=2 SV=2
Length = 193
Score = 96.7 bits (239), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 23 PPSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVG 81
PPS +D F ++ D KP D + +H+N +CVI LA +H + I + + +
Sbjct: 24 PPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKAIQRISYQIS 83
Query: 82 KS-DRSGFKVTGKRKKQNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQP 139
+ R KV+GK K+ AQ +CK+ C++ + Y + CV+G L+EVN ++ QP
Sbjct: 84 NNCSRLENKVSGKFKR-GAQFLTELAPLCKIYCSDGEEYTISSCVRGRLMEVNENILHQP 142
Query: 140 GLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 176
LL EGYIA+++PK + + LL + Y+
Sbjct: 143 SLLQEKPSTEGYIAVVLPKFEESKSVTEGLLTQQQYE 179
>sp|Q29S16|F206A_BOVIN Protein FAM206A OS=Bos taurus GN=FAM206A PE=2 SV=1
Length = 187
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 16 VHDLPLTP--PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGG 72
V DL P PS +D F ++ D KP D + +H+N +CVI LA +H +
Sbjct: 9 VADLAPEPAVPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKT 68
Query: 73 ITAVDFNVGKS-DRSGFKVTGKRKKQNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLE 130
I ++ + + + R KV+GK K+ AQ +CK+ C++ + Y + CV+G L+E
Sbjct: 69 IKSISYQISTNCSRLQNKVSGKFKR-GAQFLTELAPLCKIYCSDGEEYTISSCVRGRLME 127
Query: 131 VNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 176
VN ++ +P +L EGYIA+++PK + I LL ++Y+
Sbjct: 128 VNENILHKPSILQEKPSTEGYIAVVLPKFEESKSITEGLLTQKEYE 173
>sp|Q1LU93|F206A_DANRE Protein FAM206A OS=Danio rerio GN=fam206a PE=2 SV=1
Length = 177
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
Query: 24 PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK 82
PS ID F ++ D KP D + +H+N +CVI LA +H F++ I +++ +
Sbjct: 10 PSVIDRYFTRWYRTDLKGKPCEDHCILQHSNRICVITLAESHPIFQNGRKIKNINYQISD 69
Query: 83 S-DRSGFKVTGKRKKQNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPG 140
R KV+GK K+ Q +C++ CT+ + + C++G LLEVN ++ +P
Sbjct: 70 GCSRLKNKVSGKSKR-GGQFLTEFAPLCRITCTDEQEFTIFSCIRGRLLEVNEVILNKPD 128
Query: 141 LLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 176
LL EGYIA+I+PK + + LL E Y+
Sbjct: 129 LLMEKPSTEGYIAVILPKFEESKSVTEGLLTREQYE 164
>sp|Q5RFS0|F206A_PONAB Protein FAM206A OS=Pongo abelii GN=FAM206A PE=2 SV=1
Length = 181
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 24 PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK 82
PS +D F ++ PD K D + +H+N +CVI LA +H + I ++ + +
Sbjct: 13 PSLVDRYFTRWYKPDVKGKFCEDHCILQHSNRICVITLAESHPVLQSGKTIKSISYQIST 72
Query: 83 S-DRSGFKVTGKRKKQNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPG 140
+ R KV+GK K+ AQ +CK+ C++ + Y V CV+G L+EVN ++ +P
Sbjct: 73 NCSRLQNKVSGKFKR-GAQFLTELAPLCKIYCSDGEEYTVSSCVRGRLMEVNENILHKPS 131
Query: 141 LLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 176
+L EGYIA+++PK + I LL + Y+
Sbjct: 132 ILQEKPSTEGYIAVVLPKFEESKSITEGLLTQKQYE 167
>sp|Q9NX38|F206A_HUMAN Protein FAM206A OS=Homo sapiens GN=FAM206A PE=2 SV=1
Length = 181
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 24 PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK 82
PS +D F ++ PD K D + +H+N +CVI LA +H + I ++ + +
Sbjct: 13 PSLVDRYFTRWYKPDVKGKFCEDHCILQHSNRICVITLAESHPVLQSGKTIKSISYQIST 72
Query: 83 S-DRSGFKVTGKRKKQNAQHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPG 140
+ R KV+GK K+ AQ +CK+ C++ + Y V CV+G L+EVN ++ +P
Sbjct: 73 NCSRLQNKVSGKFKR-GAQFLTELAPLCKIYCSDGEEYTVSSCVRGRLMEVNENILHKPS 131
Query: 141 LLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 176
+L EGYIA+++PK + I LL + Y+
Sbjct: 132 ILQEKPSTEGYIAVVLPKFEESKSITEGLLTQKQYE 167
>sp|Q54TD9|F206_DICDI FAM206 family protein OS=Dictyostelium discoideum GN=DDB_G0281837
PE=3 SV=1
Length = 175
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 11/138 (7%)
Query: 45 DQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDF--NVGKSDRSGFKVTGKRKKQNAQHF 102
DQYV +H N L VIG+AP+H + E I+ ++F N ++ SG + TG K Q
Sbjct: 27 DQYVNQHTNELAVIGVAPSHPVLQQE--ISKIEFKENAINNEVSGVRKTGGFKLQ----- 79
Query: 103 ESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPAD 161
SNT +C + C+N Y +R C+KG LLE+N LI P LL ++ G++AI+ P D
Sbjct: 80 -SNTILCVITCSNGKEYFLRSCIKGKLLEINKELINNPSLLKTNHATSGFLAIVEPMIKD 138
Query: 162 WLKIKSSLLGLEDYKRKR 179
L+ E+Y + R
Sbjct: 139 KFMENPGLIKFEEYHKLR 156
>sp|Q28G67|F206A_XENTR Protein FAM206A OS=Xenopus tropicalis GN=fam206a PE=2 SV=1
Length = 183
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 24 PSAIDFNFVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK 82
PS +D F ++ D KP D + +H+N +C+I LA H ++ I + + +
Sbjct: 12 PSVVDRYFKRWYKSDVKGKPCEDHCILQHSNRICIITLAECHPLLQNGKTIKTISYQISA 71
Query: 83 S-DRSGFKVTGKRKKQNAQHFESNTAVCKVC-TNNDSYIVRCCVKGSLLEVNNRLIKQPG 140
+ R KV+GK K+ AQ + +C++ T+ + Y + C++G LLEVN +++ P
Sbjct: 72 NCSRLQNKVSGKSKR-GAQFLTEHAPLCRISSTDGEEYTIYSCIRGRLLEVNENILQNPE 130
Query: 141 LLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYK 176
LL EGYIA+++PK + + LL ++Y+
Sbjct: 131 LLKEKPSTEGYIAVVLPKFEESKTVTEGLLSQQEYE 166
>sp|Q9VFR1|F206_DROME FAM206 family protein CG9288 OS=Drosophila melanogaster GN=CG9288
PE=1 SV=1
Length = 214
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 5/176 (2%)
Query: 3 DDEEELHKLLLPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAP 62
+++E KL+ P PS +D F Y+ + K V H+N +C+I LAP
Sbjct: 17 EEQEICGKLVAPITDSFQEDYPSVVDRFFTRYY---YFKGDVPYQVLYHSNRICLICLAP 73
Query: 63 THVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRC 122
H A GI++V+F++G DRS V GK KK +T N +Y V
Sbjct: 74 EHPALAQ--GISSVNFDIGNVDRSQNVVKGKGKKGGMILQAESTLALLTTANGGTYKVPS 131
Query: 123 CVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRK 178
C++G L+EVN ++++P LL + GY AI++PK + IK+SLL E Y+ +
Sbjct: 132 CIRGKLVEVNTAIVEEPKLLEQLPEGAGYFAILLPKIENCDAIKASLLTQEQYEER 187
>sp|Q5ZHW7|F206A_CHICK Protein FAM206A OS=Gallus gallus GN=FAM206A PE=2 SV=1
Length = 173
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 4/149 (2%)
Query: 31 FVAYFAPDFL-KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKS-DRSGF 88
F ++ D +P D V +H+N +CVI LA H + IT++++ + + R
Sbjct: 13 FTRWYKADVKGRPCEDFCVLQHSNRICVITLAEAHPLLQPGKTITSINYQISPNCSRLQN 72
Query: 89 KVTGKRKKQNAQHFESNTAVCKVCTNN-DSYIVRCCVKGSLLEVNNRLIKQPGLLNSSAD 147
KV+GK K+ AQ +C++ +++ + Y + ++G L+EVN ++ P LL
Sbjct: 73 KVSGKSKR-GAQFLTELAPLCRIASSDGEEYTIYSFIRGRLIEVNENILSNPALLQEKPS 131
Query: 148 REGYIAIIMPKPADWLKIKSSLLGLEDYK 176
EGYIA+++PK + + LL E+YK
Sbjct: 132 TEGYIAVVLPKFEESKSVTQGLLTPEEYK 160
>sp|P34452|YMA7_CAEEL Uncharacterized protein F54F2.7 OS=Caenorhabditis elegans
GN=F54F2.7 PE=4 SV=2
Length = 157
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 44 HDQYVY-RHANGLCVIGLAPTHVAFKDEGGITAVDFNVGK---SDRSGFKVTGKRKKQNA 99
+D Y H +G+ V+ L E + VDF K +DRS +V+GK KK A
Sbjct: 22 YDNIAYLHHPSGVTVVVLRNI-----PESEVVEVDFGTTKKHGADRSTNQVSGKGKK-GA 75
Query: 100 QHFESNTAVCKV-CTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAII 155
+ ++ +C C + ++VR V+G+L+E+N+RL P + ++ D +G+IAII
Sbjct: 76 LILQPDSKLCTFKCKDGSEHVVRAGVRGTLVEMNDRLKTTPDFIRTAPDNQGFIAII 132
>sp|P16048|GCSH_PEA Glycine cleavage system H protein, mitochondrial OS=Pisum sativum
GN=GDCSH PE=1 SV=1
Length = 165
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 61 APTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNT--AVCKVCTNNDSY 118
AP+H K EG + + D G V + + + AV V +D
Sbjct: 44 APSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSD-- 101
Query: 119 IVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRK 178
V + G ++EVN L +PGL+NSS +G++ I P D L+ SLLG ++Y +
Sbjct: 102 -VNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELE---SLLGAKEYTKF 157
Query: 179 REE 181
EE
Sbjct: 158 CEE 160
>sp|P93255|GCSH_MESCR Glycine cleavage system H protein, mitochondrial
OS=Mesembryanthemum crystallinum GN=GDCSH PE=2 SV=1
Length = 163
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRK 178
V + G ++EVN +L PGLLNSS EG++ + P PA+ SL+G ++Y +
Sbjct: 101 VNSPISGEIVEVNTKLSDSPGLLNSSPYEEGWMVKVKPSNPAE----LESLMGSKEYTKF 156
Query: 179 REE 181
EE
Sbjct: 157 CEE 159
>sp|P25855|GCSH1_ARATH Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis
thaliana GN=GDCSH PE=1 SV=1
Length = 165
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 61 APTHVAFKDEGGITAVDFNVGKSDRSGFKV--------TGKRKKQNAQHFESNTAVCKVC 112
A +H K EG + + D G V T K+++ ES A ++
Sbjct: 44 ANSHEWVKHEGSVATIGITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEIL 103
Query: 113 TNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLG 171
+ + G ++EVN +L + PGL+NSS +G++ + P PA+ SL+G
Sbjct: 104 SP---------ISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSSPAE----LESLMG 150
Query: 172 LEDYKRKREE 181
++Y + EE
Sbjct: 151 PKEYTKFCEE 160
>sp|Q39732|GCSH_FLAAN Glycine cleavage system H protein, mitochondrial OS=Flaveria
anomala GN=GDCSH PE=2 SV=1
Length = 162
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKR 179
V + G ++EVN++L + PGL+NSS +G++ + P L SL+G ++Y +
Sbjct: 99 VNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELD---SLMGAKEYTKFC 155
Query: 180 EE 181
EE
Sbjct: 156 EE 157
>sp|P49359|GCSH_FLAPR Glycine cleavage system H protein, mitochondrial OS=Flaveria
pringlei GN=GDCSH PE=2 SV=1
Length = 162
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKR 179
V + G ++EVN++L + PGL+NSS +G++ + P L SL+G ++Y +
Sbjct: 99 VNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELD---SLMGAKEYTKFC 155
Query: 180 EE 181
EE
Sbjct: 156 EE 157
>sp|Q9LQL0|GCSH2_ARATH Probable glycine cleavage system H protein 2, mitochondrial
OS=Arabidopsis thaliana GN=At1g32470 PE=1 SV=1
Length = 166
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 61 APTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNT--AVCKVCTNNDSY 118
A +H K EG + + D G V + + N+ + + AV V ++
Sbjct: 45 ANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSE-- 102
Query: 119 IVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKR 177
+ + G ++EVN +L + PGL+NSS +G++ + P PA+ +L+G ++Y +
Sbjct: 103 -ILSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSSPAE----LEALMGPKEYTK 157
Query: 178 KREE 181
EE
Sbjct: 158 FCEE 161
>sp|P46485|GCSH_FLATR Glycine cleavage system H protein, mitochondrial OS=Flaveria
trinervia GN=GDCSH PE=2 SV=1
Length = 165
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKR 179
V + G ++EVN++L K PGL+N S +G++ + P L SL+G ++Y +
Sbjct: 101 VNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSNPSELD---SLMGPKEYTKFC 157
Query: 180 EE 181
EE
Sbjct: 158 EE 159
>sp|O67192|GCSH4_AQUAE Glycine cleavage system H protein 4 OS=Aquifex aeolicus (strain
VF5) GN=gcvH4 PE=3 SV=1
Length = 171
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 29/148 (19%)
Query: 34 YFAPDFLKPGHDQYVYRHA-----NGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGF 88
++ D+L G Y H NG +G+ T A K G I VD
Sbjct: 4 FYVEDYLVKGDRYYTKEHEWVRVKNGFAEVGI--TDYAQKQLGDIVYVDL---------- 51
Query: 89 KVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADR 148
+ + ++ + + + + V V G+++EVN L +PG++N
Sbjct: 52 -------PEKGKEVDAGDTLANIESVKNVAPVYAPVTGTVVEVNEDLKDEPGIINDDPYE 104
Query: 149 EGYIAII-MPKPADWLKIKSSLLGLEDY 175
G+IA+I M P + L+ +DY
Sbjct: 105 AGWIAVIEMKDPTE----VEDLMTAQDY 128
>sp|P49360|GCSH_FLAPU Glycine cleavage system H protein, mitochondrial (Fragment)
OS=Flaveria pubescens GN=GDCSH PE=2 SV=1
Length = 152
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDY 175
V + G ++EVN++L + PGL+NSS +G++ + P L SL+G ++Y
Sbjct: 99 VNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELD---SLMGAKEY 151
>sp|Q0A5H0|GCSH_ALHEH Glycine cleavage system H protein OS=Alkalilimnicola ehrlichei
(strain MLHE-1) GN=gcvH PE=3 SV=1
Length = 130
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK 158
+H+++ A V + + + V G ++E N+ L P L+N+ EG+I I P
Sbjct: 49 GRHYDAEEACAVVESVKAASDIYAPVGGEVIEANSELQDSPELVNTDPYGEGWIMRIRPD 108
Query: 159 PADWLKIKSSLLGLEDYK 176
+D L+ LL EDY+
Sbjct: 109 DSDDLE---QLLDPEDYQ 123
>sp|A3C6G9|GCSH_ORYSJ Glycine cleavage system H protein, mitochondrial OS=Oryza sativa
subsp. japonica GN=GDCSH PE=1 SV=1
Length = 164
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP 157
+ + G ++EVN++L + PGL+NSS +G++ + P
Sbjct: 102 INSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKP 139
>sp|A2Z9B8|GCSH_ORYSI Glycine cleavage system H protein, mitochondrial OS=Oryza sativa
subsp. indica GN=GDCSH PE=2 SV=1
Length = 164
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP 157
+ + G ++EVN++L + PGL+NSS +G++ + P
Sbjct: 102 INSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKP 139
>sp|O67573|GCSH2_AQUAE Glycine cleavage system H protein 2 OS=Aquifex aeolicus (strain
VF5) GN=gcvH2 PE=3 SV=1
Length = 161
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 63 THVAFK--DEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIV 120
V FK ++G +T ++G++ R+G K+ R K ++ + V + + + V
Sbjct: 23 NQVWFKVNEDGTVTVGVTDIGQA-RAG-KIINIRIKPPGKYVKKGKPVASLESGKWAGPV 80
Query: 121 RCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP 157
++G ++E N +L +P L+N EG+IA + P
Sbjct: 81 PADIEGEVVERNEKLFDKPDLINEDPYGEGWIAKLKP 117
>sp|Q67N37|GCSH_SYMTH Glycine cleavage system H protein OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=gcvH PE=3 SV=1
Length = 128
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 64 HVAFKDEGGITAVDFNVGKSDRSGFKV------TGKRKKQNAQHFESNTAVCKVCTNNDS 117
H + EG I V D+ G V G+ KQN Q V V T +D
Sbjct: 14 HEWIRVEGNIGIVGITWFAQDQLGDVVFVELPEVGRELKQNEQF----GVVESVKTVSDL 69
Query: 118 YIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYI 152
Y C G ++EVN +L P L+N EG+I
Sbjct: 70 Y---CPASGKVVEVNTKLESSPELINQDPYGEGWI 101
>sp|B3DZN7|GCSH_METI4 Glycine cleavage system H protein OS=Methylacidiphilum infernorum
(isolate V4) GN=gcvH PE=3 SV=1
Length = 128
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 124 VKGSLLEVNNRLIKQPGLLNSSADREGYI 152
V G +L VN +L++QP L+NS+ EG+I
Sbjct: 72 VSGEILAVNTQLVEQPSLINSNPYGEGWI 100
>sp|Q51518|PHZA_PSECL Probable isochorismatase OS=Pseudomonas chlororaphis GN=phzA PE=3
SV=1
Length = 207
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 104 SNTA-VCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQ---PGLLNSSADREGYIAIIMPKP 159
SN A + + +N + GS+ E L+K PG+ S ADRE + + PKP
Sbjct: 57 SNAARIRQWAADNGVPVAYTAQPGSMSEEQRGLLKDFWGPGMKASPADRE-VVGALTPKP 115
Query: 160 ADWLKIK 166
DWL K
Sbjct: 116 GDWLLTK 122
>sp|Q9PGW7|GCSH_XYLFA Glycine cleavage system H protein OS=Xylella fastidiosa (strain
9a5c) GN=gcvH PE=3 SV=2
Length = 131
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAII-MP 157
H ++ T + + + + V G ++EVN L +P +N EG+I +I M
Sbjct: 49 GDHLDAGTTAAVIESVKAASDIYSPVTGKVIEVNTTLSDKPETINEDPYGEGWIMVIEMQ 108
Query: 158 KPADWLKIKSSLLGLEDYKRKRE 180
P + S LL +DY + E
Sbjct: 109 APEE----ISDLLSPDDYTKVLE 127
>sp|B5Y8S2|GCSH_COPPD Glycine cleavage system H protein OS=Coprothermobacter
proteolyticus (strain ATCC 35245 / DSM 5265 / BT)
GN=gcvH PE=3 SV=1
Length = 127
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKR 177
V V G ++EVN +L P ++N EG+IA+I + +D + + +L+ E+YK+
Sbjct: 69 VYSPVSGKVVEVNEKLKNSPEIINDDPYGEGWIAVI--ELSD-VSVLDTLMSAEEYKQ 123
>sp|Q9YDG2|GCSH_AERPE Probable glycine cleavage system H protein OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=gcvH PE=3 SV=2
Length = 143
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 90 VTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADRE 149
+ G + + + AV V + + + + G +++VN +L+ QP L+N E
Sbjct: 52 IVGVELPEKGRKVKKGEAVATVESIKATADIYAPLSGEIVDVNEKLLDQPELINDDPYGE 111
Query: 150 GYI-AIIMPKPADWLKIKSSLLGLEDY---KRKREE 181
G+I I + P ++ SLL E Y RKR+E
Sbjct: 112 GWIFKIKVEDPGEF----ESLLTPEQYVESVRKRKE 143
>sp|B8GPP4|SYP_THISH Proline--tRNA ligase OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=proS PE=3 SV=1
Length = 574
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 135 LIKQPGLLNSSADREGYIAIIMP--KPAD-------WLKIKSSLLGLEDYKRKREECFGS 185
L K GL+ DR G + ++MP +PA+ W + LL L+D + RE CFG
Sbjct: 50 LRKVEGLVRDEMDRAGALELLMPAVQPAELWQESGRWEQYGPELLRLKD-RHMREFCFGP 108
Query: 186 S 186
+
Sbjct: 109 T 109
>sp|A9L331|GCSH_SHEB9 Glycine cleavage system H protein OS=Shewanella baltica (strain
OS195) GN=gcvH PE=3 SV=1
Length = 129
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK 158
+ + G ++ VN L P L+NSSA EG+ +MP
Sbjct: 70 IYAPISGEVIAVNEALEDSPELVNSSAYGEGWFFRVMPS 108
>sp|A6WSL2|GCSH_SHEB8 Glycine cleavage system H protein OS=Shewanella baltica (strain
OS185) GN=gcvH PE=3 SV=1
Length = 129
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK 158
+ + G ++ VN L P L+NSSA EG+ +MP
Sbjct: 70 IYAPISGEVIAVNEALEDSPELVNSSAYGEGWFFRVMPS 108
>sp|B8EB46|GCSH_SHEB2 Glycine cleavage system H protein OS=Shewanella baltica (strain
OS223) GN=gcvH PE=3 SV=1
Length = 129
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK 158
+ + G ++ VN L P L+NSSA EG+ +MP
Sbjct: 70 IYAPISGEVIAVNEALEDSPELVNSSAYGEGWFFRVMPS 108
>sp|Q54FI0|GCSH2_DICDI Glycine cleavage system H-like protein gcvH2 OS=Dictyostelium
discoideum GN=gcvH2 PE=3 SV=1
Length = 150
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 113 TNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSS 168
+N ++ + V G +LEVN +L K P LLN + + KP ++ K+ S
Sbjct: 84 SNATAFGLYAPVSGEVLEVNEKLKKSPSLLNEDPANNWMVKFKVSKPDEFKKLMDS 139
>sp|A3D084|GCSH_SHEB5 Glycine cleavage system H protein OS=Shewanella baltica (strain
OS155 / ATCC BAA-1091) GN=gcvH PE=3 SV=1
Length = 129
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK 158
+ + G ++ VN L P L+NSSA EG+ +MP
Sbjct: 70 IYAPISGEVIAVNEALEDSPELVNSSAYGEGWFFRVMPS 108
>sp|A1UTQ4|GCSH_BARBK Glycine cleavage system H protein OS=Bartonella bacilliformis
(strain ATCC 35685 / KC583) GN=gcvH PE=3 SV=1
Length = 122
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 103 ESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYI 152
+S V V +D Y + G ++E+N L P L+N A++EG++
Sbjct: 51 DSAAVVESVKAASDVY---SPIDGEVVEINEALADDPALVNKKAEKEGWL 97
>sp|B1GYV6|GCSH_UNCTG Glycine cleavage system H protein OS=Uncultured termite group 1
bacterium phylotype Rs-D17 GN=gcvH PE=3 SV=1
Length = 124
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 117 SYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAII 155
++ + + G +LEVN+ +++ P ++N S GY+ II
Sbjct: 65 AFDIYSPLSGKILEVNDSVLRSPEVINQSPYENGYLFII 103
>sp|A6LGR3|GCSH_PARD8 Glycine cleavage system H protein OS=Parabacteroides distasonis
(strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=gcvH PE=3
SV=1
Length = 126
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 124 VKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKR 177
V G +LEVN L P L+N A +G++ I A L+ LL EDY++
Sbjct: 72 VSGEVLEVNAELEDAPELVNEDAYGKGWLIKISLTDASELE---ELLSAEDYQK 122
>sp|Q2K814|GCSH_RHIEC Glycine cleavage system H protein OS=Rhizobium etli (strain CFN 42
/ ATCC 51251) GN=gcvH PE=3 SV=1
Length = 120
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 64 HVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCC 123
H K EG + V D+ G V + + A F N V + + V C
Sbjct: 8 HEWLKIEGDVATVGITNYAVDQLGDLVFVELPEVGAT-FSKNGNAATVESVKAASDVYCP 66
Query: 124 VKGSLLEVNNRLIKQPGLLNSSADREGY-IAIIMPKPAD 161
+ G + EVN ++ P L+NS G+ + + PAD
Sbjct: 67 LDGEITEVNPAIVADPSLVNSDPQGAGWFFKLKLANPAD 105
>sp|C3MCZ7|GCSH_RHISN Glycine cleavage system H protein OS=Rhizobium sp. (strain NGR234)
GN=gcvH PE=3 SV=1
Length = 120
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 64 HVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTA--VCKVCTNNDSYIVR 121
H K EGG+ V + + G V + + A + ++A V V +D Y
Sbjct: 8 HEWLKVEGGVATVGITEHAAGQLGDLVFVELPEAGATFSKGDSAATVESVKAASDVY--- 64
Query: 122 CCVKGSLLEVNNRLIKQPGLLNS 144
C + G ++E+N ++ P L+NS
Sbjct: 65 CPLDGEIVEINQAIVDDPSLVNS 87
>sp|Q9LFW0|FB257_ARATH Putative F-box protein At5g15660 OS=Arabidopsis thaliana
GN=At5g15660 PE=4 SV=1
Length = 438
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 39 FLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGG 72
F P H++Y Y H NGL +G + G
Sbjct: 113 FTYPRHEEYYYHHVNGLISVGYGTDQIVINPTTG 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,274,482
Number of Sequences: 539616
Number of extensions: 3213715
Number of successful extensions: 6811
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6767
Number of HSP's gapped (non-prelim): 56
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)