Query 029860
Match_columns 186
No_of_seqs 119 out of 1098
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3266 Predicted glycine clea 100.0 2E-43 4.3E-48 280.0 12.7 166 13-179 2-168 (172)
2 COG0509 GcvH Glycine cleavage 100.0 2E-31 4.3E-36 207.3 11.6 117 41-180 12-129 (131)
3 PF01597 GCV_H: Glycine cleava 100.0 2.6E-29 5.7E-34 193.9 12.5 116 41-181 4-121 (122)
4 TIGR00527 gcvH glycine cleavag 100.0 2.5E-29 5.5E-34 195.4 11.6 115 41-180 9-125 (127)
5 PRK13380 glycine cleavage syst 100.0 7.2E-29 1.6E-33 196.7 12.8 115 41-180 16-133 (144)
6 PRK01202 glycine cleavage syst 100.0 1.3E-28 2.8E-33 191.4 12.6 114 41-180 11-126 (127)
7 KOG3373 Glycine cleavage syste 100.0 4.8E-29 1E-33 199.2 9.6 129 27-181 39-170 (172)
8 TIGR03077 not_gcvH glycine cle 99.9 2.2E-26 4.8E-31 175.1 11.4 101 41-162 3-105 (110)
9 PRK00624 glycine cleavage syst 99.9 2.9E-26 6.2E-31 175.5 11.5 101 41-162 5-107 (114)
10 cd06848 GCS_H Glycine cleavage 99.9 6.6E-23 1.4E-27 151.6 10.5 93 41-154 2-95 (96)
11 cd06663 Biotinyl_lipoyl_domain 98.3 2.2E-06 4.9E-11 59.2 5.6 72 57-154 1-72 (73)
12 PRK05889 putative acetyl-CoA c 96.8 0.0036 7.8E-08 43.4 5.4 36 99-134 21-56 (71)
13 PRK08225 acetyl-CoA carboxylas 96.7 0.0032 6.9E-08 43.3 4.5 35 100-134 21-55 (70)
14 PF00364 Biotin_lipoyl: Biotin 95.8 0.017 3.6E-07 40.4 4.1 37 98-134 24-60 (74)
15 PRK06748 hypothetical protein; 95.6 0.036 7.8E-07 40.3 5.4 36 100-135 24-60 (83)
16 cd06850 biotinyl_domain The bi 95.0 0.043 9.3E-07 36.1 4.1 36 99-134 18-53 (67)
17 PTZ00144 dihydrolipoamide succ 94.9 0.052 1.1E-06 50.2 5.6 38 98-135 68-105 (418)
18 PRK14875 acetoin dehydrogenase 94.2 0.091 2E-06 45.4 5.3 37 98-134 26-62 (371)
19 PRK07051 hypothetical protein; 94.2 0.092 2E-06 37.2 4.4 36 98-133 28-63 (80)
20 PRK06549 acetyl-CoA carboxylas 93.6 0.17 3.8E-06 39.6 5.3 38 98-135 79-116 (130)
21 COG0511 AccB Biotin carboxyl c 92.1 0.27 5.8E-06 38.7 4.5 35 98-132 88-122 (140)
22 PRK06302 acetyl-CoA carboxylas 91.9 0.23 5E-06 39.8 4.0 36 98-133 104-139 (155)
23 PRK05641 putative acetyl-CoA c 91.6 0.45 9.7E-06 38.2 5.3 38 98-135 102-139 (153)
24 TIGR00531 BCCP acetyl-CoA carb 91.3 0.29 6.4E-06 39.2 4.0 37 98-134 105-141 (156)
25 PLN02226 2-oxoglutarate dehydr 91.1 0.39 8.5E-06 45.0 5.2 63 71-135 89-152 (463)
26 PLN02983 biotin carboxyl carri 91.0 0.32 6.8E-06 42.7 4.2 37 98-134 222-258 (274)
27 COG0508 AceF Pyruvate/2-oxoglu 90.6 0.43 9.3E-06 43.8 4.9 39 98-136 26-64 (404)
28 PF09891 DUF2118: Uncharacteri 90.5 0.45 9.7E-06 38.3 4.3 38 99-136 99-137 (150)
29 PRK14040 oxaloacetate decarbox 89.4 0.65 1.4E-05 44.8 5.3 38 98-135 542-579 (593)
30 PRK14042 pyruvate carboxylase 88.0 0.88 1.9E-05 44.0 5.1 37 98-134 543-579 (596)
31 PRK09282 pyruvate carboxylase 87.8 0.84 1.8E-05 44.0 4.9 38 98-135 540-577 (592)
32 TIGR01235 pyruv_carbox pyruvat 87.7 0.95 2.1E-05 46.8 5.4 37 98-134 1092-1128(1143)
33 TIGR01108 oadA oxaloacetate de 87.3 0.95 2.1E-05 43.5 4.9 36 98-133 535-570 (582)
34 PRK05704 dihydrolipoamide succ 86.8 1.4 2.9E-05 40.6 5.5 38 98-135 26-63 (407)
35 TIGR02712 urea_carbox urea car 86.7 1.2 2.5E-05 46.4 5.5 37 98-134 1150-1186(1201)
36 cd06849 lipoyl_domain Lipoyl d 84.0 2.5 5.4E-05 26.9 4.3 35 99-133 25-59 (74)
37 TIGR01347 sucB 2-oxoglutarate 82.8 1.8 3.9E-05 39.8 4.3 38 98-135 24-61 (403)
38 TIGR02927 SucB_Actino 2-oxoglu 82.5 2.1 4.5E-05 41.2 4.8 38 98-135 159-196 (590)
39 PRK11854 aceF pyruvate dehydro 82.4 2.6 5.6E-05 40.8 5.5 35 98-132 228-262 (633)
40 PRK12999 pyruvate carboxylase; 82.4 1.8 3.8E-05 44.9 4.5 37 98-134 1094-1130(1146)
41 PRK11854 aceF pyruvate dehydro 81.6 2.9 6.2E-05 40.6 5.4 34 100-133 26-59 (633)
42 PRK11855 dihydrolipoamide acet 80.8 3.3 7.1E-05 39.3 5.4 37 99-135 26-62 (547)
43 KOG0559 Dihydrolipoamide succi 79.8 1.3 2.7E-05 40.8 2.2 34 98-131 96-129 (457)
44 TIGR01348 PDHac_trf_long pyruv 78.5 4 8.7E-05 38.9 5.3 60 73-135 116-176 (546)
45 PF13375 RnfC_N: RnfC Barrel s 77.0 2.8 6.1E-05 31.3 3.0 40 100-140 50-89 (101)
46 PRK11855 dihydrolipoamide acet 76.3 5.8 0.00013 37.7 5.7 60 72-134 118-178 (547)
47 TIGR01348 PDHac_trf_long pyruv 75.0 6 0.00013 37.7 5.4 37 99-135 24-60 (546)
48 PRK11856 branched-chain alpha- 72.7 5.1 0.00011 36.5 4.2 39 98-136 26-64 (411)
49 TIGR01349 PDHac_trf_mito pyruv 70.0 5.3 0.00011 37.1 3.7 40 98-137 23-62 (435)
50 PLN02528 2-oxoisovalerate dehy 69.2 9.6 0.00021 35.1 5.2 35 99-133 23-57 (416)
51 PLN02744 dihydrolipoyllysine-r 68.6 5.6 0.00012 38.1 3.6 38 98-135 136-173 (539)
52 PF05896 NQRA: Na(+)-transloca 68.5 6.2 0.00013 34.4 3.6 35 100-135 49-83 (257)
53 KOG0557 Dihydrolipoamide acety 66.6 11 0.00024 35.6 4.9 44 70-131 52-95 (470)
54 COG1038 PycA Pyruvate carboxyl 65.7 6.8 0.00015 39.7 3.6 53 62-132 1079-1131(1149)
55 COG4770 Acetyl/propionyl-CoA c 60.9 14 0.0003 35.9 4.6 38 98-135 593-630 (645)
56 TIGR02927 SucB_Actino 2-oxoglu 60.2 17 0.00036 35.1 5.1 37 98-134 26-62 (590)
57 PRK11892 pyruvate dehydrogenas 53.6 16 0.00035 34.2 3.8 39 98-136 26-64 (464)
58 TIGR01945 rnfC electron transp 53.5 12 0.00027 34.5 3.0 37 99-136 50-86 (435)
59 PF13533 Biotin_lipoyl_2: Biot 50.0 16 0.00034 23.4 2.3 17 118-134 3-19 (50)
60 TIGR01936 nqrA NADH:ubiquinone 46.3 25 0.00054 32.9 3.8 32 100-133 49-81 (447)
61 COG1726 NqrA Na+-transporting 40.7 28 0.00061 32.2 3.1 33 101-134 50-82 (447)
62 TIGR03309 matur_yqeB selenium- 39.8 36 0.00078 29.7 3.5 31 98-132 181-211 (256)
63 cd06251 M14_ASTE_ASPA_like_1 A 39.6 47 0.001 28.7 4.3 40 98-137 236-277 (287)
64 PF00358 PTS_EIIA_1: phosphoen 38.4 31 0.00067 27.0 2.7 15 119-133 41-55 (132)
65 PF13437 HlyD_3: HlyD family s 36.4 24 0.00052 25.1 1.7 17 119-135 1-17 (105)
66 PRK05352 Na(+)-translocating N 35.9 39 0.00085 31.6 3.4 31 100-132 50-81 (448)
67 KOG0369 Pyruvate carboxylase [ 34.7 54 0.0012 33.0 4.2 33 100-132 1126-1158(1176)
68 PRK05035 electron transport co 32.6 44 0.00095 33.1 3.2 38 100-139 57-95 (695)
69 PF14382 ECR1_N: Exosome compl 30.6 79 0.0017 19.5 3.1 14 119-132 26-39 (39)
70 TIGR00830 PTBA PTS system, glu 29.3 57 0.0012 25.1 2.8 14 120-133 38-51 (121)
71 COG4072 Uncharacterized protei 28.7 76 0.0016 25.5 3.4 39 101-139 112-151 (161)
72 cd00210 PTS_IIA_glc PTS_IIA, P 28.4 58 0.0012 25.2 2.7 15 119-133 37-51 (124)
73 TIGR02994 ectoine_eutE ectoine 28.3 82 0.0018 28.1 4.0 37 98-134 272-312 (325)
74 PRK09439 PTS system glucose-sp 27.2 60 0.0013 26.5 2.7 15 119-133 59-73 (169)
75 PF09851 SHOCT: Short C-termin 26.8 71 0.0015 18.6 2.3 15 166-180 13-27 (31)
76 cd06254 M14_ASTE_ASPA_like_4 A 26.2 1.1E+02 0.0023 26.5 4.3 37 99-135 241-279 (288)
77 cd06252 M14_ASTE_ASPA_like_2 A 25.3 1.1E+02 0.0025 26.8 4.3 37 99-135 262-302 (316)
78 COG3608 Predicted deacylase [G 24.5 83 0.0018 28.5 3.3 34 100-133 275-311 (331)
79 PRK09783 copper/silver efflux 24.1 55 0.0012 29.8 2.2 20 117-136 209-228 (409)
80 cd06255 M14_ASTE_ASPA_like_5 A 23.2 1.2E+02 0.0027 26.3 4.1 34 99-132 249-284 (293)
81 PF01551 Peptidase_M23: Peptid 23.2 69 0.0015 22.5 2.1 15 119-133 15-29 (96)
82 COG4656 RnfC Predicted NADH:ub 22.3 86 0.0019 30.2 3.1 40 101-142 54-93 (529)
83 cd06253 M14_ASTE_ASPA_like_3 A 22.0 1.2E+02 0.0027 26.4 3.9 38 99-136 247-287 (298)
84 TIGR00998 8a0101 efflux pump m 21.0 63 0.0014 27.8 1.8 19 117-135 204-222 (334)
85 TIGR00164 PS_decarb_rel phosph 21.0 1.5E+02 0.0033 24.1 4.0 15 119-133 36-50 (189)
86 PF02666 PS_Dcarbxylase: Phosp 20.7 1.6E+02 0.0035 24.0 4.1 13 119-131 22-34 (202)
No 1
>KOG3266 consensus Predicted glycine cleavage system H protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-43 Score=280.02 Aligned_cols=166 Identities=40% Similarity=0.695 Sum_probs=156.8
Q ss_pred ccccCCCCCCCCccceeceeeeecccCCCCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcCCCCcccCCceeeC
Q 029860 13 LPNVHDLPLTPPSAIDFNFVAYFAPDFLKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTG 92 (186)
Q Consensus 13 ~~~~~~~~~~~p~~~~r~~~~~y~~d~~~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~vg~~~r~~~~v~g 92 (186)
.++...++..+|+++||||+|||..|+....||+++.+|+|++|+|++||+|++.+..+.|.+|+|++|+.+|+.|+|||
T Consensus 2 at~~~~~~~~~pS~vdr~ftr~y~~d~kg~~~D~~i~~HsnricvI~la~~hp~l~~g~~i~sv~~~ign~dRsqnkVSG 81 (172)
T KOG3266|consen 2 ATEIGMAEPSYPSVVDRYFTRYYKEDFKGSGYDHCIYQHSNRICVITLAPSHPALQSGKTIKSVTFQIGNCDRSQNKVSG 81 (172)
T ss_pred CccccccCCCChhhhhhhhhhhhhhhccCCCCCceEEecCCceEEEEecCCCchhhcccceeeeecccccchhhhheecc
Confidence 45666788999999999999999999876679999999999999999999999999999999999999999999999999
Q ss_pred ccccCcceEeeeCCceEEEE-ecCCeeeEeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeCCccchhhhhccCCC
Q 029860 93 KRKKQNAQHFESNTAVCKVC-TNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLG 171 (186)
Q Consensus 93 k~K~~g~~~ve~~~~l~~v~-s~~~~~~I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~~~~~~~~~~~~Lls 171 (186)
|+|| ||+.+++.++||.+. +++++|.++|||+|+|+|||++|..+|+||++.|..+||+||++|.+++....++.||+
T Consensus 82 K~Kk-gAl~lq~~s~Lc~~~~a~g~~y~V~scVrG~LvEvN~rl~~~P~ll~~~pd~qGy~aI~lp~~e~~t~~~~~llt 160 (172)
T KOG3266|consen 82 KGKK-GALILQELSPLCKFKTADGSTYVVRSCVRGTLVEVNERLKTTPDLLREAPDNQGYIAILLPAIEEETEIKESLLT 160 (172)
T ss_pred cccc-ccEeeccCCcceeEEecCCCeEEEeeeeceeEEEeehhhccCcHHHHhCCCcCcEEEEEecccccccccccccCC
Confidence 9999 999999999999995 56689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 029860 172 LEDYKRKR 179 (186)
Q Consensus 172 ~~eY~~~~ 179 (186)
.++|++..
T Consensus 161 ~eqy~ek~ 168 (172)
T KOG3266|consen 161 QEQYEEKS 168 (172)
T ss_pred HHHHHHHH
Confidence 99998764
No 2
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=99.97 E-value=2e-31 Score=207.33 Aligned_cols=117 Identities=26% Similarity=0.372 Sum_probs=101.0
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+.+|+|+...+ +++++||| |++||+++|+|++|+|| +|+ .+..|+.+++|+|+++..+
T Consensus 12 ~~~heWvr~e~-d~~~tvGi--T~~aq~~lGdiv~Velpe~G~------------------~v~~g~~~~~vESvKaasd 70 (131)
T COG0509 12 TAEHEWVRVEG-DGTATVGI--TDYAQDQLGDIVFVELPEVGA------------------EVKAGESLAVVESVKAASD 70 (131)
T ss_pred ccceEEEEecC-CCEEEEeC--CHHHHHhcCCEEEEEcCCCCC------------------eecCCCeEEEEEeeeeecc
Confidence 45799987654 57999999 99999999999999999 775 3678888998998888888
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeCCccchhhhhccCCCHHHHHHHHh
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKRE 180 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~~~~~~~~~~~~Lls~~eY~~~~~ 180 (186)
|||||+|+|+|||++|.++|++||++||++|||+.+.+... ....+.||+.++|.++.+
T Consensus 71 vyaPvsGeVvevN~~l~~~PeliN~dPyg~gWi~klk~~d~--~~~~~~L~~~~~y~~~~~ 129 (131)
T COG0509 71 VYAPVSGEVVEVNEALVDSPELINSDPYGEGWIVKLKPADP--SEELEALLDAEAYAELLK 129 (131)
T ss_pred ccCCCceeEEEechhhhcChhhhccCCCCCceEEEEeeCCh--HHHHHhccCHHHHHHHhh
Confidence 99999999999999999999999999999999996666521 122388999999998764
No 3
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=99.96 E-value=2.6e-29 Score=193.93 Aligned_cols=116 Identities=26% Similarity=0.456 Sum_probs=97.1
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+++|.|+... .+|.++||| |++||+.+|+|++|+|| +|. .++.|++|++|++.+.+++
T Consensus 4 ~~~h~Wv~~~-~~g~~~vGi--t~~a~~~lG~i~~v~lp~~g~------------------~~~~g~~~~~ies~k~~~~ 62 (122)
T PF01597_consen 4 TEDHLWVKPE-GDGVVRVGI--TDFAQDELGDIVYVELPKVGT------------------KLKKGDPFASIESSKAVSD 62 (122)
T ss_dssp ETTSEEEEEE-TTTEEEEEE---HHHHHHH-SEEEEE-B-TT-------------------EE-TTSEEEEEEESSEEEE
T ss_pred CCCcEEEEEC-CCCEEEEEE--CchHhhcCCceEEEEEccCCC------------------EEecCCcEEEEEECceeee
Confidence 4689987655 577999999 99999999999999999 554 4899999999999999999
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHhh
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKREE 181 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~~-~~~~~~~~~~Lls~~eY~~~~~~ 181 (186)
|+|||+|+|+++|+.|.++|++||++||++|||+++.|. +.++ ++||++++|.+++..
T Consensus 63 l~sPvsG~Vv~vN~~l~~~P~lln~~p~~~gWl~~i~~~d~~~~----~~Ll~~~eY~~~~~~ 121 (122)
T PF01597_consen 63 LYSPVSGTVVEVNEELLDNPELLNSDPYGDGWLIKIKPSDPEEF----DELLSAEEYEKFLKE 121 (122)
T ss_dssp EEESSSEEEEEE-GHHHT-TTHHHHSTTTTTEEEEEEESCGGGG----GGSBEHHHHHHHHHC
T ss_pred cccceEEEEEEEccccccChHHhccCCCCCCeEEEEEeCCHHHH----HhCCCHHHHHHHHhc
Confidence 999999999999999999999999999999999977764 4445 669999999998753
No 4
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=99.96 E-value=2.5e-29 Score=195.43 Aligned_cols=115 Identities=22% Similarity=0.354 Sum_probs=102.8
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+++|.|+... .+|.++||| |++||+++|+|.+|+|| +|. .++.|+++|+|++.+....
T Consensus 9 ~~~H~Wv~~~-~~g~~~vGi--T~~a~~~lG~i~~v~lp~~G~------------------~v~~g~~~~~IEs~K~~~~ 67 (127)
T TIGR00527 9 SKEHEWVRVE-GDGTATVGI--TEFAQDELGDIVFVELPEVGA------------------EVSAGESCGSVESVKAASD 67 (127)
T ss_pred CCCcEEEEEc-CCcEEEEee--cHHHhhCCCCCceeecCCCCC------------------EecCCCEEEEEEEeeeeee
Confidence 5789997644 567999999 99999999999999999 664 4889999999999999999
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHh
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKRE 180 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~~-~~~~~~~~~~Lls~~eY~~~~~ 180 (186)
|+||++|+|+++|+.|.++|++||++||++|||+.+.+. +.++ +.|||+++|.++++
T Consensus 68 i~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl~~i~~~~~~~~----~~Ll~~~~Y~~~~~ 125 (127)
T TIGR00527 68 IYAPVSGTVVEVNDALEDSPELVNEDPYGGGWLIKVKLSDESEL----EGLMDAEQYEATLE 125 (127)
T ss_pred eecCCcEEEEEehHhhhhChHHHhCCCccCcEEEEEecCCHHHH----HhcCCHHHHHHHhh
Confidence 999999999999999999999999999999999977764 4444 78999999999764
No 5
>PRK13380 glycine cleavage system protein H; Provisional
Probab=99.96 E-value=7.2e-29 Score=196.74 Aligned_cols=115 Identities=23% Similarity=0.349 Sum_probs=102.3
Q ss_pred CC-CccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCee
Q 029860 41 KP-GHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSY 118 (186)
Q Consensus 41 ~~-~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~ 118 (186)
++ +|.|+... .+|+++||| |++||+++|+|++|++| +|. .|+.|++|++|++.+...
T Consensus 16 ~~~~H~Wv~~~-~~g~~~vGi--td~aq~~lG~I~~v~lp~~G~------------------~V~~Gd~~~~IEs~K~~~ 74 (144)
T PRK13380 16 TIKNHEWLRLE-GDGTVTVGI--TDYAQTMAGDVVFVRLKELGK------------------KVEKGKPVATLESGKWAG 74 (144)
T ss_pred CCCCeEEEEEc-CCCEEEEec--CHHHHHhcCCEEEEEcCCCCC------------------EeeCCCeEEEEEEcceEe
Confidence 45 89998654 467999999 99999999999999999 664 489999999999999999
Q ss_pred eEeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeC-CccchhhhhccCCCHHHHHHHHh
Q 029860 119 IVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKRKRE 180 (186)
Q Consensus 119 ~I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~-~~~~~~~~~~~Lls~~eY~~~~~ 180 (186)
+|+||++|+|+++|.+|.++|+|||++||++|||+.+.+ +++++ +.||+.++|.++.+
T Consensus 75 ~v~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~d~~~~----~~Ll~~~~y~~~~~ 133 (144)
T PRK13380 75 PVPAPLTGEVVEVNEALEDSPELVNEDPYGEGWFFRFKPANPEEL----KQLLDGDAADRLLK 133 (144)
T ss_pred eeecCcCEEEEEEHHhhhhChHHhcCCCCCCCeEEEEEECCHHHH----HhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999996654 45555 78999999998764
No 6
>PRK01202 glycine cleavage system protein H; Provisional
Probab=99.96 E-value=1.3e-28 Score=191.38 Aligned_cols=114 Identities=25% Similarity=0.351 Sum_probs=102.0
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+++|.|+... ++.++||| |++||+.+|+|++|+|| +|. .|+.|++||+|++.+.+++
T Consensus 11 s~~H~Wv~~~--~~~~~vGi--t~~a~~~lG~i~~v~lp~~G~------------------~v~~g~~~~~IEs~K~~~~ 68 (127)
T PRK01202 11 TKSHEWVRVE--GDTATVGI--TDHAQEQLGDIVFVELPEVGD------------------EVKAGETFGVVESVKAASD 68 (127)
T ss_pred CCCcEEEEEc--CCEEEEee--CHHHHhhcCCeeEEEcCCCCC------------------EecCCCEEEEEEEcceeee
Confidence 4689998654 47999999 99999999999999999 554 4899999999999999999
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHh
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKRE 180 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~~-~~~~~~~~~~Lls~~eY~~~~~ 180 (186)
|+||++|+|+++|.+|.++|++||++||++|||+.+.+. +.++ +.||+.++|.++++
T Consensus 69 i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~~~~~----~~L~~~~~Y~~~~~ 126 (127)
T PRK01202 69 IYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSDESEL----DDLLDAEAYEALIE 126 (127)
T ss_pred eecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCCHHHH----HhCCCHHHHHHHhc
Confidence 999999999999999999999999999999999977765 3344 78999999999865
No 7
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=99.96 E-value=4.8e-29 Score=199.18 Aligned_cols=129 Identities=22% Similarity=0.397 Sum_probs=104.0
Q ss_pred ceeceeeeecccC-CCCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeee
Q 029860 27 IDFNFVAYFAPDF-LKPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFES 104 (186)
Q Consensus 27 ~~r~~~~~y~~d~-~~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~ 104 (186)
..+-..++++... ++..|+|+... |++++||| |++|+..+|++++|+|| +|.. |..
T Consensus 39 ~~~~~~p~~~~~~~yt~qHEWV~~~--~~vgtvGI--t~~A~~~LGdvv~veLPe~Gt~------------------vsk 96 (172)
T KOG3373|consen 39 SKHPPLPYALSGRKYTSQHEWVLVE--GGVGTVGI--TDFAQEHLGDVVYVELPEVGTE------------------VSK 96 (172)
T ss_pred hccCCcccccccccccceeeEEEec--CCeeEech--hhhhhhhcCceEEEEcCCCCCc------------------ccc
Confidence 3333444444443 38899999764 78999999 99999999999999999 8853 344
Q ss_pred CCceEEEEecCCeeeEeeeeceEEEeeehhhhcCccccccCCCCCceEE-EEeCCccchhhhhccCCCHHHHHHHHhh
Q 029860 105 NTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIA-IIMPKPADWLKIKSSLLGLEDYKRKREE 181 (186)
Q Consensus 105 ~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWla-ii~~~~~~~~~~~~~Lls~~eY~~~~~~ 181 (186)
++.++.+++++....||+||+|+|+|||+.|.++|.|+|++||.+|||+ +.+.+++++ ++||+.++|.+++..
T Consensus 97 gds~gavESVKaaSeIysp~sGeVtEiNe~l~EnPGlvN~Sp~e~GWl~k~kls~~~el----e~Lm~~e~Y~kf~~e 170 (172)
T KOG3373|consen 97 GDSFGAVESVKAASEIYSPVSGEVTEINEKLEENPGLVNESPEEDGWLIKMKLSSPEEL----ESLMNEEQYAKFCEE 170 (172)
T ss_pred CcceeeeeehhhhhhhhCcCCceEEEeccccccCCCcccCCcccCceEEEEEeCCHHHH----HHhcCHHHHHhhhhc
Confidence 4444444444444449999999999999999999999999999999999 777778888 889999999999864
No 8
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=99.94 E-value=2.2e-26 Score=175.10 Aligned_cols=101 Identities=22% Similarity=0.283 Sum_probs=90.1
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+++|.|+...+ ++.++||| |++||+++|+|++|+|| +|+ .|+.|++|++|++.+...+
T Consensus 3 ~~~H~Wv~~~~-~~~~~vGi--T~~aq~~lG~i~~v~lp~~G~------------------~V~~g~~i~~IEs~K~~~e 61 (110)
T TIGR03077 3 SDYHVWILPIH-SQVVRLGL--TSRMQENLGNILHIDLPSVGS------------------SCKEGEVLVILESSKSAIE 61 (110)
T ss_pred CCCcEEEEEcC-CCEEEEee--CHHHHHhcCCEEEEECCCCCC------------------EEcCCCEEEEEEeccEEEE
Confidence 57899987554 67999999 99999999999999999 554 4899999999999999999
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeC-Cccch
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADW 162 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~-~~~~~ 162 (186)
|+||++|+|+++|++|.++|++||++||++|||+.+.+ ++.++
T Consensus 62 i~sP~sG~Vv~vN~~l~~~P~lln~~py~~gWl~~v~~~~~~~~ 105 (110)
T TIGR03077 62 VLSPVSGEVIEVNIALEDDTQPINHSPESEGWFVVVQLDEDFDG 105 (110)
T ss_pred EeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECCHHHh
Confidence 99999999999999999999999999999999995554 44444
No 9
>PRK00624 glycine cleavage system protein H; Provisional
Probab=99.94 E-value=2.9e-26 Score=175.49 Aligned_cols=101 Identities=21% Similarity=0.277 Sum_probs=90.5
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+++|.|+...+ +|.++||| |++||+++|+|++|+|| +|+ .|+.|++||+|++.+....
T Consensus 5 ~~~H~Wv~~~~-~~~~~vGi--T~~a~~~lG~i~~v~lp~~G~------------------~V~~g~~i~~IEs~K~~~~ 63 (114)
T PRK00624 5 SDYHVWIEPIH-SRIVRLGL--TSKMQENLGNILHIDLPSVGS------------------FCKEGEVLVILESSKSAIE 63 (114)
T ss_pred CCCcEEEEEcC-CCEEEEee--CHHHHHhcCCEEEEECCCCCC------------------EEeCCCEEEEEEeccEEEE
Confidence 57999987554 67999999 99999999999999999 664 4899999999999999999
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccch
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADW 162 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~~-~~~~ 162 (186)
|+||++|+|+++|++|.++|++||++||++|||+.+.++ +.++
T Consensus 64 i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~~~~~~ 107 (114)
T PRK00624 64 VLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQLDEDFDS 107 (114)
T ss_pred EeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECChhHh
Confidence 999999999999999999999999999999999966654 3444
No 10
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=99.89 E-value=6.6e-23 Score=151.59 Aligned_cols=93 Identities=25% Similarity=0.375 Sum_probs=85.6
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+++|.|+...+ +|.++||| |++|++.+|+|.+|+|+ +|. .++.|+.||+|++.+.+++
T Consensus 2 ~~~h~W~~~~~-~~~~~lGl--t~~~~~~lG~i~~i~~~~~G~------------------~v~~g~~l~~iEs~k~~~~ 60 (96)
T cd06848 2 TKDHEWVKVEG-DGIATVGI--TDYAQDLLGDIVFVELPEVGT------------------EVKKGDPFGSVESVKAASD 60 (96)
T ss_pred CCCCEEEEECC-CcEEEEee--CHHHHhhCCCEEEEEecCCCC------------------EEeCCCEEEEEEEccEEEE
Confidence 46899987664 57999999 99999999999999998 453 5899999999999999999
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEE
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAI 154 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlai 154 (186)
|+||++|+|+++|.+|.++|++||++||++|||+.
T Consensus 61 i~sP~~G~v~~~n~~l~~~p~~ln~~p~~~gWl~~ 95 (96)
T cd06848 61 LYSPVSGEVVEVNEALLDNPELINSDPYGEGWLVK 95 (96)
T ss_pred EeCCCCEEEEEEhhhhhcChHHHhCCCCCCCeEEE
Confidence 99999999999999999999999999999999984
No 11
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=98.26 E-value=2.2e-06 Score=59.21 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=55.0
Q ss_pred EEeecCChHhHhcCCCEEEEEcCCCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhhh
Q 029860 57 VIGLAPTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI 136 (186)
Q Consensus 57 ~VGia~t~~a~~~~g~I~~V~l~vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L~ 136 (186)
+||+ +++++ .++....+.+.+. .+..++.|++|+++++.+...+|+||++|+|+++|..+.
T Consensus 1 ~~~~--~~~~~-~~~~g~~~~~~v~----------------~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g 61 (73)
T cd06663 1 TILI--PDLAQ-HLGDGTVVKWLKK----------------VGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEG 61 (73)
T ss_pred Cccc--CCCCC-CccCEEEEEEEcC----------------CcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCC
Confidence 4677 77777 5566665544311 233689999999999999999999999999999998887
Q ss_pred cCccccccCCCCCceEEE
Q 029860 137 KQPGLLNSSADREGYIAI 154 (186)
Q Consensus 137 ~~P~Lln~~P~~~GWlai 154 (186)
++ ++..+||+.
T Consensus 62 ~~-------v~~g~~l~~ 72 (73)
T cd06663 62 TK-------VEGDTPLVK 72 (73)
T ss_pred CE-------ECCCCEEEE
Confidence 66 456788874
No 12
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.80 E-value=0.0036 Score=43.35 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=32.1
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
+..+++|++||++++.+-.++|+||++|.|.+++-.
T Consensus 21 Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~ 56 (71)
T PRK05889 21 GDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVS 56 (71)
T ss_pred CCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeC
Confidence 346899999999999999999999999999999843
No 13
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.69 E-value=0.0032 Score=43.30 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=31.4
Q ss_pred eEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 100 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 100 ~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
..++.|++|+++++.+...++.||++|+|.+++-.
T Consensus 21 ~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~ 55 (70)
T PRK08225 21 DTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQ 55 (70)
T ss_pred CEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEec
Confidence 36899999999999998999999999999998743
No 14
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=95.76 E-value=0.017 Score=40.41 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=33.2
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..++.|++||.|++.+...+|+||.+|.|.++.-.
T Consensus 24 ~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~ 60 (74)
T PF00364_consen 24 EGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVE 60 (74)
T ss_dssp TTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESST
T ss_pred CCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEEC
Confidence 4567999999999999999999999999999988644
No 15
>PRK06748 hypothetical protein; Validated
Probab=95.56 E-value=0.036 Score=40.31 Aligned_cols=36 Identities=6% Similarity=0.022 Sum_probs=31.6
Q ss_pred eEeeeCCceEEEEe-cCCeeeEeeeeceEEEeeehhh
Q 029860 100 QHFESNTAVCKVCT-NNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 100 ~~ve~~~~l~~v~s-~~~~~~I~spV~G~vvEvN~~L 135 (186)
..++.|++|+.|++ ++...+|.||.+|+|.+++-..
T Consensus 24 D~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~ 60 (83)
T PRK06748 24 SYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVE 60 (83)
T ss_pred CEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCC
Confidence 36899999999999 8888899999999999998543
No 16
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.03 E-value=0.043 Score=36.11 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=30.7
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
+..+++|+.|+++++.+...+|+||.+|.|..++-.
T Consensus 18 G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~ 53 (67)
T cd06850 18 GDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVK 53 (67)
T ss_pred CCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEEC
Confidence 346899999999987776789999999999988754
No 17
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=94.92 E-value=0.052 Score=50.17 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=33.7
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..|+.|++||+|++.+..++|.||.+|+|.++.-.-
T Consensus 68 ~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~ 105 (418)
T PTZ00144 68 VGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEE 105 (418)
T ss_pred CCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCC
Confidence 46689999999999999999999999999999887443
No 18
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=94.24 E-value=0.091 Score=45.39 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=32.6
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..|+.|++||+|++.+.+.+|.||.+|+|.+++-.
T Consensus 26 ~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~ 62 (371)
T PRK14875 26 EGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQ 62 (371)
T ss_pred CCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcC
Confidence 3457899999999999999999999999999988643
No 19
>PRK07051 hypothetical protein; Validated
Probab=94.17 E-value=0.092 Score=37.19 Aligned_cols=36 Identities=11% Similarity=0.013 Sum_probs=31.6
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeeh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~ 133 (186)
.+..++.|++++++++.+....|.||++|+|..++-
T Consensus 28 ~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~ 63 (80)
T PRK07051 28 VGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLV 63 (80)
T ss_pred CCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEc
Confidence 355799999999999988888999999999998874
No 20
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.61 E-value=0.17 Score=39.62 Aligned_cols=38 Identities=5% Similarity=0.024 Sum_probs=32.8
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..++.|++|+.+++.+-..+|.||.+|+|.+++-..
T Consensus 79 ~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~ 116 (130)
T PRK06549 79 VGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTP 116 (130)
T ss_pred CCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCC
Confidence 34578999999999999888999999999999887544
No 21
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=92.09 E-value=0.27 Score=38.70 Aligned_cols=35 Identities=6% Similarity=0.054 Sum_probs=31.1
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeee
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVN 132 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN 132 (186)
-+..|+.|++||.|++-+-...|.||.+|.|.+|=
T Consensus 88 vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Il 122 (140)
T COG0511 88 VGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEIL 122 (140)
T ss_pred cCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEE
Confidence 45679999999999998888889999999999974
No 22
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=91.91 E-value=0.23 Score=39.77 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=32.4
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeeh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~ 133 (186)
-+..|+.|++||.|++.+-...|.||++|+|+++.-
T Consensus 104 ~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v 139 (155)
T PRK06302 104 VGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILV 139 (155)
T ss_pred CCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEc
Confidence 456899999999999999989999999999999874
No 23
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=91.56 E-value=0.45 Score=38.22 Aligned_cols=38 Identities=5% Similarity=-0.011 Sum_probs=33.3
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..++.|+.|+.+++.+...+|.||.+|+|..++-+.
T Consensus 102 ~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~ 139 (153)
T PRK05641 102 EGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKE 139 (153)
T ss_pred CCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCC
Confidence 56689999999999999888899999999999998543
No 24
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=91.33 E-value=0.29 Score=39.22 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=33.0
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..|+.|++||.|++.+-..+|.|+++|+|.++.-.
T Consensus 105 ~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~ 141 (156)
T TIGR00531 105 VGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVE 141 (156)
T ss_pred CCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeC
Confidence 4568999999999999999999999999999988743
No 25
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=91.12 E-value=0.39 Score=45.02 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=43.1
Q ss_pred CCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 71 GGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 71 g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
|++..|.+| .|...... .+.-=-++ .+..|+.|++||+|++.+...+|.||.+|+|.++.-.-
T Consensus 89 ~~m~~i~mP~lg~~~~eG-~I~~w~v~-~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~e 152 (463)
T PLN02226 89 GDTVEAVVPHMGESITDG-TLATFLKK-PGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKE 152 (463)
T ss_pred CCceEEecCCCCCCcceE-EEEEEEeC-CCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCC
Confidence 555566677 55421110 11111122 45689999999999999999999999999999887443
No 26
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=90.98 E-value=0.32 Score=42.65 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=33.5
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..|+.|++||.|++.+...+|.||.+|+|.+++-.
T Consensus 222 vGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVk 258 (274)
T PLN02983 222 VGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAE 258 (274)
T ss_pred CCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecC
Confidence 4568999999999999999999999999999999854
No 27
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=90.56 E-value=0.43 Score=43.82 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=34.2
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI 136 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L~ 136 (186)
.+-.|+.|++|++|++++.+.+|.||.+|+|.++.-.--
T Consensus 26 ~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G 64 (404)
T COG0508 26 VGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEG 64 (404)
T ss_pred CCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCC
Confidence 344789999999999999999999999999999876543
No 28
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=90.47 E-value=0.45 Score=38.30 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=28.4
Q ss_pred ceEeeeCCceEEEEecCC-eeeEeeeeceEEEeeehhhh
Q 029860 99 AQHFESNTAVCKVCTNND-SYIVRCCVKGSLLEVNNRLI 136 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~-~~~I~spV~G~vvEvN~~L~ 136 (186)
+-.|+.|+.|+.+.+.++ +..++||++|.|+-||+.=.
T Consensus 99 G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p~ 137 (150)
T PF09891_consen 99 GDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIPW 137 (150)
T ss_dssp SEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEETT
T ss_pred CcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecCC
Confidence 456889999999987766 57999999999999997644
No 29
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=89.39 E-value=0.65 Score=44.76 Aligned_cols=38 Identities=8% Similarity=0.070 Sum_probs=33.2
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..|+.|++||++++.+-..+|.||++|+|.+++-..
T Consensus 542 ~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~ 579 (593)
T PRK14040 542 EGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKE 579 (593)
T ss_pred CCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCC
Confidence 45679999999999999888999999999999998543
No 30
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=87.96 E-value=0.88 Score=43.95 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=32.6
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..|+.|++|+.|++.+-+..|.||++|+|.++.-.
T Consensus 543 ~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~ 579 (596)
T PRK14042 543 AGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQ 579 (596)
T ss_pred CCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeC
Confidence 4557999999999999999999999999999888643
No 31
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=87.78 E-value=0.84 Score=43.97 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=33.4
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..|+.|++|+.+++.+-..+|+||++|+|.+++-.-
T Consensus 540 ~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~ 577 (592)
T PRK09282 540 EGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKE 577 (592)
T ss_pred CCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCC
Confidence 46689999999999999999999999999998887544
No 32
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=87.67 E-value=0.95 Score=46.83 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=33.0
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..|+.|++|+.|++.+-..+|.||++|+|.+++-.
T Consensus 1092 ~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~ 1128 (1143)
T TIGR01235 1092 SGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVK 1128 (1143)
T ss_pred CCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeC
Confidence 3557899999999999999999999999999998744
No 33
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=87.33 E-value=0.95 Score=43.53 Aligned_cols=36 Identities=8% Similarity=0.086 Sum_probs=32.5
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeeh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~ 133 (186)
.+..|+.|++|+.|++.+-+.+|.||++|+|.+++-
T Consensus 535 ~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v 570 (582)
T TIGR01108 535 EGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILV 570 (582)
T ss_pred CCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEe
Confidence 455799999999999999999999999999998874
No 34
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=86.82 E-value=1.4 Score=40.61 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=32.9
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..|+.|++||.|++.+..++|.||.+|+|.++.-..
T Consensus 26 ~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~ 63 (407)
T PRK05704 26 PGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEE 63 (407)
T ss_pred CcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCC
Confidence 35579999999999999999999999999998776443
No 35
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=86.67 E-value=1.2 Score=46.36 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=33.6
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..|+.|++||.|++.+.+.+|.||++|+|.+++-.
T Consensus 1150 ~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~ 1186 (1201)
T TIGR02712 1150 VGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQ 1186 (1201)
T ss_pred CCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeC
Confidence 5678999999999999999999999999999998843
No 36
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=83.95 E-value=2.5 Score=26.88 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=29.2
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeeh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~ 133 (186)
+..+..+++++.++..+....+.+|.+|.+.+.|-
T Consensus 25 g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~ 59 (74)
T cd06849 25 GDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILV 59 (74)
T ss_pred CCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEee
Confidence 34678889999898777778999999999988773
No 37
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=82.78 E-value=1.8 Score=39.82 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=33.0
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..++.|++||+|++++...+|.||.+|+|.++.-.-
T Consensus 24 ~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~e 61 (403)
T TIGR01347 24 VGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKE 61 (403)
T ss_pred CcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCC
Confidence 45578999999999999999999999999998876443
No 38
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=82.54 E-value=2.1 Score=41.24 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=33.5
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..|+.|++||+|++++...+|.||.+|+|.++.-..
T Consensus 159 ~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~ 196 (590)
T TIGR02927 159 VGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEE 196 (590)
T ss_pred CCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCC
Confidence 46689999999999999999999999999998776544
No 39
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=82.39 E-value=2.6 Score=40.82 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=31.5
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeee
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVN 132 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN 132 (186)
.+..++.|++||+|++++....|.||.+|+|.++.
T Consensus 228 ~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~ 262 (633)
T PRK11854 228 VGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIK 262 (633)
T ss_pred CCCeecCCCceEEEEecceeeEeeCCCCeEEEEEe
Confidence 45689999999999999999999999999987665
No 40
>PRK12999 pyruvate carboxylase; Reviewed
Probab=82.39 E-value=1.8 Score=44.88 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=32.4
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..|+.|++|+.+++.+-..+|.||++|+|.+++-.
T Consensus 1094 ~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~ 1130 (1146)
T PRK12999 1094 EGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVK 1130 (1146)
T ss_pred CCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeC
Confidence 4557899999999999888899999999999998754
No 41
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=81.59 E-value=2.9 Score=40.56 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=30.9
Q ss_pred eEeeeCCceEEEEecCCeeeEeeeeceEEEeeeh
Q 029860 100 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 100 ~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~ 133 (186)
..++.|++|+.|++.+....|.||.+|+|.++.-
T Consensus 26 d~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~ 59 (633)
T PRK11854 26 DKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKV 59 (633)
T ss_pred CEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEe
Confidence 4689999999999999999999999999988764
No 42
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=80.80 E-value=3.3 Score=39.35 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=32.1
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
+..++.|++||+|++.+..+.|.||++|.|..++-..
T Consensus 26 Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~ 62 (547)
T PRK11855 26 GDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKV 62 (547)
T ss_pred CCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCC
Confidence 3468999999999999999999999999999887543
No 43
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=79.79 E-value=1.3 Score=40.77 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=31.4
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEee
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEV 131 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEv 131 (186)
.+-.++.++.+|+|+.++....|.||.+|.|.|+
T Consensus 96 ~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~ 129 (457)
T KOG0559|consen 96 VGDRVNEDEAVAEIETDKTTVEVPSPASGVITEL 129 (457)
T ss_pred cccccccchhheeeeccceeeeccCCCcceeeEE
Confidence 4557899999999999999999999999999999
No 44
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=78.51 E-value=4 Score=38.89 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=43.0
Q ss_pred EEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 73 ITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 73 I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
+..|.+| .|. .. +-.+.--.++ .+..++.|++||+|++.+....|.||.+|+|.+++-..
T Consensus 116 ~~~~~~P~~g~-~~-eg~i~~w~v~-~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~ 176 (546)
T TIGR01348 116 VQEVTVPDIGD-IE-KVTVIEVLVK-VGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKV 176 (546)
T ss_pred ceEEeCCCCCC-cc-eeEEeEEeeC-CCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCC
Confidence 3466677 664 21 1122222233 56789999999999999999999999999999887554
No 45
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=77.00 E-value=2.8 Score=31.31 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=28.8
Q ss_pred eEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhhhcCcc
Q 029860 100 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPG 140 (186)
Q Consensus 100 ~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L~~~P~ 140 (186)
..|..|+.|++... .-...|+|||+|+|.+|.....-++.
T Consensus 50 d~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~~~~~g~ 89 (101)
T PF13375_consen 50 DKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKRPIPHGS 89 (101)
T ss_pred CEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeeeEcCCCC
Confidence 45777777776532 21458999999999999887665544
No 46
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=76.27 E-value=5.8 Score=37.66 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=41.6
Q ss_pred CEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 72 GITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 72 ~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..|.+| .|. .. +-++.-=.++ .+..++.|+.||+|+..+....|.||.+|+|..+.-.
T Consensus 118 ~~~~~~~P~~g~-~~-eg~i~~w~v~-~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~ 178 (547)
T PRK11855 118 GVVEVKVPDIGE-IT-EVEVIEWLVK-VGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVK 178 (547)
T ss_pred CceEEecCCCCC-cc-eeEEeEEEeC-CCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecC
Confidence 34566677 554 21 1112211222 5668999999999999999999999999999886544
No 47
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=75.05 E-value=6 Score=37.74 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=32.2
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
+..++.|++||+|++.+..+.|.|+++|+|.+++-+.
T Consensus 24 Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~ 60 (546)
T TIGR01348 24 GDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKV 60 (546)
T ss_pred CCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecC
Confidence 3468899999999999999999999999999887654
No 48
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=72.69 E-value=5.1 Score=36.46 Aligned_cols=39 Identities=10% Similarity=0.085 Sum_probs=33.1
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI 136 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L~ 136 (186)
.+..++.|++||.|+..+..+.|.||.+|.|.+++-..-
T Consensus 26 ~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G 64 (411)
T PRK11856 26 VGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEG 64 (411)
T ss_pred CcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCC
Confidence 345789999999999999999999999999998775544
No 49
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=70.02 E-value=5.3 Score=37.05 Aligned_cols=40 Identities=8% Similarity=0.105 Sum_probs=34.4
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhhhc
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIK 137 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L~~ 137 (186)
.+..++.|++||+|++++....|.||.+|+|.+++-...+
T Consensus 23 ~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~ 62 (435)
T TIGR01349 23 EGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGT 62 (435)
T ss_pred CCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCC
Confidence 3456899999999999999999999999999988866654
No 50
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=69.20 E-value=9.6 Score=35.15 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=30.6
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeeh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~ 133 (186)
+..++.|++||.+++.+...++.||.+|.|.++.-
T Consensus 23 Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v 57 (416)
T PLN02528 23 GDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINF 57 (416)
T ss_pred CCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEe
Confidence 34689999999999999999999999999877653
No 51
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=68.64 E-value=5.6 Score=38.11 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=33.0
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..++.|++||+|++++...++-||.+|+|.++--..
T Consensus 136 eGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~e 173 (539)
T PLN02744 136 EGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 173 (539)
T ss_pred CCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecC
Confidence 45678999999999999999999999999998876444
No 52
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=68.48 E-value=6.2 Score=34.41 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=24.9
Q ss_pred eEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 100 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 100 ~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
-.|..|++|..=+..- ...+.||++|+|.|||.--
T Consensus 49 D~Vk~Gq~LF~dK~~p-~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 49 DRVKAGQPLFEDKKNP-GVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred CEEeCCCeeEeeCCCC-CcEEecCCCeEEEEEecCC
Confidence 3577788877543222 3568899999999999743
No 53
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=66.57 E-value=11 Score=35.55 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeeeEeeeeceEEEee
Q 029860 70 EGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEV 131 (186)
Q Consensus 70 ~g~I~~V~l~vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEv 131 (186)
.|.|++-...+|+ .+.+|++||+|++++++..+-+.=.|.|--|
T Consensus 52 eGnIvsW~kKeGd------------------kls~GDvl~EVETDKAtmd~E~~ddGyLAKI 95 (470)
T KOG0557|consen 52 EGNIVSWKKKEGD------------------KLSAGDVLLEVETDKATMDVEAQDDGYLAKI 95 (470)
T ss_pred CCceeeEeeccCC------------------ccCCCceEEEEecccceeeeeeccCCeeeee
Confidence 5777766554543 5899999999999999888777766666543
No 54
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=65.74 E-value=6.8 Score=39.67 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=39.0
Q ss_pred CChHhHhcCCCEEEEEcCCCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeeeEeeeeceEEEeee
Q 029860 62 PTHVAFKDEGGITAVDFNVGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVN 132 (186)
Q Consensus 62 ~t~~a~~~~g~I~~V~l~vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN 132 (186)
|.|.+..+-|.|+.|-...| ..|..|++|+.+++-+=+..|-||.+|+|.+|-
T Consensus 1079 p~higApmpG~Vv~v~V~~G------------------~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~ 1131 (1149)
T COG1038 1079 PGHIGAPMPGVVVEVKVKKG------------------DKVKKGDVLAVIEAMKMETTISAPFDGTVKEVL 1131 (1149)
T ss_pred ccccCCCCCCceEEEEEccC------------------CeecCCCeeeehhhhhhceeeecCCCceEeEEE
Confidence 44555555666666655433 357889999988877777789999999999885
No 55
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=60.94 E-value=14 Score=35.93 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=32.2
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.++.|..|++|+.+++-+=+..|++|.+|+|..+|-.-
T Consensus 593 ~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~ 630 (645)
T COG4770 593 EGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAE 630 (645)
T ss_pred CCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecC
Confidence 45678999999999888777889999999999997543
No 56
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=60.24 E-value=17 Score=35.11 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=31.7
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..++.|++||.+++++....|.||.+|.|.+++-.
T Consensus 26 ~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~ 62 (590)
T TIGR02927 26 EGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAE 62 (590)
T ss_pred CCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeec
Confidence 4557899999999999999999999999998776543
No 57
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=53.63 E-value=16 Score=34.24 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=32.7
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI 136 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L~ 136 (186)
.+..++.|+.|+.|++++.+.++.||..|+|.++.-..-
T Consensus 26 ~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G 64 (464)
T PRK11892 26 EGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEG 64 (464)
T ss_pred CCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCC
Confidence 455789999999999999999999999999877665443
No 58
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=53.52 E-value=12 Score=34.45 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=27.0
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhhh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI 136 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L~ 136 (186)
+..|..|+.|+..+. .-...|.|||+|+|.+|++...
T Consensus 50 Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~~~~~ 86 (435)
T TIGR01945 50 GDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIEERVS 86 (435)
T ss_pred CCEECCCCEeccCCC-cceeeeecCCCeEEEEeccccc
Confidence 346778888886622 1245899999999999997544
No 59
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=50.04 E-value=16 Score=23.40 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.6
Q ss_pred eeEeeeeceEEEeeehh
Q 029860 118 YIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 118 ~~I~spV~G~vvEvN~~ 134 (186)
..|++|++|+|.++|-.
T Consensus 3 ~~I~~~~~G~V~~v~V~ 19 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVK 19 (50)
T ss_pred EEEeCCCCEEEEEEEec
Confidence 46999999999999754
No 60
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=46.32 E-value=25 Score=32.95 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=23.6
Q ss_pred eEeeeCCceEEEEecCC-eeeEeeeeceEEEeeeh
Q 029860 100 QHFESNTAVCKVCTNND-SYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 100 ~~ve~~~~l~~v~s~~~-~~~I~spV~G~vvEvN~ 133 (186)
..|..|++|+.- .+. ...+.|||+|+|.+|+.
T Consensus 49 D~V~~Gq~I~~~--~~~~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 49 DKVKAGQPLFED--KKNPGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CEEcCCCEeEec--CCCceEEEEcCCCeEEEEEec
Confidence 356777777744 332 46899999999999964
No 61
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=40.68 E-value=28 Score=32.22 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=21.7
Q ss_pred EeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 101 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 101 ~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.|.+|.+|++=+-.-+ ..+-||++|+|++||.-
T Consensus 50 ~VkkGq~LfEdKknpg-v~~Tap~sG~V~aI~RG 82 (447)
T COG1726 50 AVKKGQVLFEDKKNPG-VVFTAPVSGKVTAIHRG 82 (447)
T ss_pred eeeccceeeecccCCC-eEEeccCCceEEEeecc
Confidence 4555555554432222 45889999999999953
No 62
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=39.84 E-value=36 Score=29.74 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=25.4
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeee
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVN 132 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN 132 (186)
-+..|++|++|+.|.. .+|+||++|.|.-+=
T Consensus 181 IGd~V~KGqvLa~I~~----~~V~APidGIVrGli 211 (256)
T TIGR03309 181 IGDSVKKGDVIATVGD----VPVVAPIDGLLRGLI 211 (256)
T ss_pred CCCEEeCCCEEEEEcC----EEEEccCCeEEEEEe
Confidence 4567899999999954 579999999998753
No 63
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=39.60 E-value=47 Score=28.72 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=30.0
Q ss_pred cceEeeeCCceEEEEec--CCeeeEeeeeceEEEeeehhhhc
Q 029860 98 NAQHFESNTAVCKVCTN--NDSYIVRCCVKGSLLEVNNRLIK 137 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~--~~~~~I~spV~G~vvEvN~~L~~ 137 (186)
.+..|++|+.|++|... ....+++||.+|.|+.......-
T Consensus 236 ~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~~~~~v 277 (287)
T cd06251 236 LGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRNNLPLV 277 (287)
T ss_pred CCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEecCCCcc
Confidence 34568889999999643 33578999999999987765543
No 64
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=38.41 E-value=31 Score=26.97 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=12.6
Q ss_pred eEeeeeceEEEeeeh
Q 029860 119 IVRCCVKGSLLEVNN 133 (186)
Q Consensus 119 ~I~spV~G~vvEvN~ 133 (186)
.|+||++|+|..+-+
T Consensus 41 ~v~AP~~G~v~~i~~ 55 (132)
T PF00358_consen 41 KVYAPVDGTVTMIFP 55 (132)
T ss_dssp EEEESSSEEEEEE-T
T ss_pred eEEEEeeEEEEEEcC
Confidence 499999999999865
No 65
>PF13437 HlyD_3: HlyD family secretion protein
Probab=36.37 E-value=24 Score=25.13 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.3
Q ss_pred eEeeeeceEEEeeehhh
Q 029860 119 IVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 119 ~I~spV~G~vvEvN~~L 135 (186)
.|+||++|.|..+|...
T Consensus 1 ~i~AP~~G~V~~~~~~~ 17 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQP 17 (105)
T ss_pred CEECCCCEEEEEEeCCC
Confidence 38999999999998644
No 66
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=35.89 E-value=39 Score=31.59 Aligned_cols=31 Identities=6% Similarity=0.213 Sum_probs=23.3
Q ss_pred eEeeeCCceEEEEecCC-eeeEeeeeceEEEeee
Q 029860 100 QHFESNTAVCKVCTNND-SYIVRCCVKGSLLEVN 132 (186)
Q Consensus 100 ~~ve~~~~l~~v~s~~~-~~~I~spV~G~vvEvN 132 (186)
..|..|+.|+.- .+. ...+.|||+|+|.+|+
T Consensus 50 D~V~~Gq~I~~~--~~~~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 50 DKVKKGQPLFED--KKNPGVKFTSPASGTVVAIN 81 (448)
T ss_pred CEEcCCCEeEec--CCCceEEEEcCCCeEEEEEc
Confidence 357777777743 332 4689999999999996
No 67
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=34.69 E-value=54 Score=33.02 Aligned_cols=33 Identities=6% Similarity=0.158 Sum_probs=27.4
Q ss_pred eEeeeCCceEEEEecCCeeeEeeeeceEEEeee
Q 029860 100 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVN 132 (186)
Q Consensus 100 ~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN 132 (186)
..+..|++||.+.+-+-+..|-||.+|+|-.+.
T Consensus 1126 ~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~ 1158 (1176)
T KOG0369|consen 1126 AKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVH 1158 (1176)
T ss_pred ceecCCCceEeeecceeeeeecCCCCceeeEEE
Confidence 357889999987777777889999999998765
No 68
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=32.65 E-value=44 Score=33.09 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=26.9
Q ss_pred eEeeeCCceEEEEecCC-eeeEeeeeceEEEeeehhhhcCc
Q 029860 100 QHFESNTAVCKVCTNND-SYIVRCCVKGSLLEVNNRLIKQP 139 (186)
Q Consensus 100 ~~ve~~~~l~~v~s~~~-~~~I~spV~G~vvEvN~~L~~~P 139 (186)
..|..|++|+.- .+. ...|.||++|+|++|+....-+|
T Consensus 57 D~V~~GQ~i~~~--~~~~s~~vhApvSG~V~~I~~~~~~h~ 95 (695)
T PRK05035 57 DRVLKGQPLTQG--DGRMSLPVHAPTSGTVVAIEPHPTAHP 95 (695)
T ss_pred CEEcCCCEeeec--CCCceeEEeCCCCeEEeeeccccccCC
Confidence 356777777733 343 46899999999999997654443
No 69
>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C.
Probab=30.61 E-value=79 Score=19.54 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=11.7
Q ss_pred eEeeeeceEEEeee
Q 029860 119 IVRCCVKGSLLEVN 132 (186)
Q Consensus 119 ~I~spV~G~vvEvN 132 (186)
.|||-+.|.+.-.|
T Consensus 26 ~I~asv~G~v~~~n 39 (39)
T PF14382_consen 26 NIYASVAGTVKIDN 39 (39)
T ss_dssp EEEESSSEEEEEET
T ss_pred EEEEEeeEEEEEcC
Confidence 69999999987665
No 70
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=29.26 E-value=57 Score=25.15 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=12.3
Q ss_pred EeeeeceEEEeeeh
Q 029860 120 VRCCVKGSLLEVNN 133 (186)
Q Consensus 120 I~spV~G~vvEvN~ 133 (186)
|+||++|+|..+-+
T Consensus 38 v~AP~~G~v~~v~~ 51 (121)
T TIGR00830 38 VVAPVDGKIGKIFP 51 (121)
T ss_pred EEccCCeEEEEEcc
Confidence 99999999998754
No 71
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.73 E-value=76 Score=25.52 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=30.1
Q ss_pred EeeeCCceEEEEecC-CeeeEeeeeceEEEeeehhhhcCc
Q 029860 101 HFESNTAVCKVCTNN-DSYIVRCCVKGSLLEVNNRLIKQP 139 (186)
Q Consensus 101 ~ve~~~~l~~v~s~~-~~~~I~spV~G~vvEvN~~L~~~P 139 (186)
.+..|++++.+.+.+ ++.-+.+|+.|.|+-+-+.-.+.|
T Consensus 112 RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~E~t~kRp 151 (161)
T COG4072 112 RVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYIDEFTNKRP 151 (161)
T ss_pred hhcCCCceeEEEecccceEEecCCCCcEEEEEeecccCCC
Confidence 466788999997654 467899999999999988544444
No 72
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=28.45 E-value=58 Score=25.20 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.9
Q ss_pred eEeeeeceEEEeeeh
Q 029860 119 IVRCCVKGSLLEVNN 133 (186)
Q Consensus 119 ~I~spV~G~vvEvN~ 133 (186)
.|+||++|+|..+-+
T Consensus 37 ~v~AP~~G~v~~i~~ 51 (124)
T cd00210 37 KVVAPVDGTIVQIFP 51 (124)
T ss_pred eEECcCCeEEEEEcc
Confidence 499999999998854
No 73
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=28.26 E-value=82 Score=28.07 Aligned_cols=37 Identities=11% Similarity=0.018 Sum_probs=28.9
Q ss_pred cceEeeeCCceEEEEec---CC-eeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTN---ND-SYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~---~~-~~~I~spV~G~vvEvN~~ 134 (186)
-+..|++|+.|++|..- +. ...|+||.+|.|+..+..
T Consensus 272 ~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~~~ 312 (325)
T TIGR02994 272 LGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARHFP 312 (325)
T ss_pred CCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEeCC
Confidence 34578889999999763 22 568999999999997754
No 74
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=27.17 E-value=60 Score=26.46 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=12.7
Q ss_pred eEeeeeceEEEeeeh
Q 029860 119 IVRCCVKGSLLEVNN 133 (186)
Q Consensus 119 ~I~spV~G~vvEvN~ 133 (186)
.|+||++|+|..+-+
T Consensus 59 ~v~AP~dG~V~~vf~ 73 (169)
T PRK09439 59 KMVAPVDGTIGKIFE 73 (169)
T ss_pred EEEecCCeEEEEEcC
Confidence 399999999998753
No 75
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=26.82 E-value=71 Score=18.55 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=12.5
Q ss_pred hccCCCHHHHHHHHh
Q 029860 166 KSSLLGLEDYKRKRE 180 (186)
Q Consensus 166 ~~~Lls~~eY~~~~~ 180 (186)
..+++|.++|.+.+.
T Consensus 13 ~~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 13 DKGEISEEEYEQKKA 27 (31)
T ss_pred HcCCCCHHHHHHHHH
Confidence 378999999988765
No 76
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=26.15 E-value=1.1e+02 Score=26.48 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=26.7
Q ss_pred ceEeeeCCceEEEEec-CC-eeeEeeeeceEEEeeehhh
Q 029860 99 AQHFESNTAVCKVCTN-ND-SYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~-~~-~~~I~spV~G~vvEvN~~L 135 (186)
+..|++|++|++|... ++ .-.|+||.+|.|+.++...
T Consensus 241 G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~~ 279 (288)
T cd06254 241 GDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTATL 279 (288)
T ss_pred CCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCCC
Confidence 4457778888888643 22 5678999999998877643
No 77
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=25.25 E-value=1.1e+02 Score=26.76 Aligned_cols=37 Identities=8% Similarity=0.027 Sum_probs=28.7
Q ss_pred ceEeeeCCceEEEEec---CC-eeeEeeeeceEEEeeehhh
Q 029860 99 AQHFESNTAVCKVCTN---ND-SYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~---~~-~~~I~spV~G~vvEvN~~L 135 (186)
+..|++|+.|++|... +. ...|+||..|.|+..+...
T Consensus 262 G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~~~ 302 (316)
T cd06252 262 GDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRPPG 302 (316)
T ss_pred CCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeCCC
Confidence 4568889999999653 22 5689999999999988654
No 78
>COG3608 Predicted deacylase [General function prediction only]
Probab=24.49 E-value=83 Score=28.51 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=26.9
Q ss_pred eEeeeCCceEEEEec---CCeeeEeeeeceEEEeeeh
Q 029860 100 QHFESNTAVCKVCTN---NDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 100 ~~ve~~~~l~~v~s~---~~~~~I~spV~G~vvEvN~ 133 (186)
..||.|+.|+.|... ....+|+|+++|.|+..-.
T Consensus 275 d~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~ 311 (331)
T COG3608 275 DKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRS 311 (331)
T ss_pred CcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEee
Confidence 358889999999653 3357999999999998643
No 79
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=24.13 E-value=55 Score=29.82 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=17.4
Q ss_pred eeeEeeeeceEEEeeehhhh
Q 029860 117 SYIVRCCVKGSLLEVNNRLI 136 (186)
Q Consensus 117 ~~~I~spV~G~vvEvN~~L~ 136 (186)
.+.|+||++|.|.+.|-..-
T Consensus 209 ~~~I~AP~dGvV~~~~v~~G 228 (409)
T PRK09783 209 RFTLKAPIDGVITAFDLRAG 228 (409)
T ss_pred cEEEECCCCeEEEEEECCCC
Confidence 47999999999999987764
No 80
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=23.23 E-value=1.2e+02 Score=26.28 Aligned_cols=34 Identities=6% Similarity=0.101 Sum_probs=23.6
Q ss_pred ceEeeeCCceEEEEec--CCeeeEeeeeceEEEeee
Q 029860 99 AQHFESNTAVCKVCTN--NDSYIVRCCVKGSLLEVN 132 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~--~~~~~I~spV~G~vvEvN 132 (186)
+..|++|+.|++|... .....++||.+|.|+..|
T Consensus 249 G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~~ 284 (293)
T cd06255 249 GDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGIH 284 (293)
T ss_pred CCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee
Confidence 3457778888888543 224567888888888874
No 81
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=23.16 E-value=69 Score=22.49 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=14.0
Q ss_pred eEeeeeceEEEeeeh
Q 029860 119 IVRCCVKGSLLEVNN 133 (186)
Q Consensus 119 ~I~spV~G~vvEvN~ 133 (186)
+|+||.+|+|+.+..
T Consensus 15 ~V~A~~~G~V~~~~~ 29 (96)
T PF01551_consen 15 PVYAPADGKVVFVGE 29 (96)
T ss_dssp EEEESSSEEEEEEEE
T ss_pred EEEeCccEEEEEEEe
Confidence 699999999999987
No 82
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=22.29 E-value=86 Score=30.19 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=29.6
Q ss_pred EeeeCCceEEEEecCCeeeEeeeeceEEEeeehhhhcCcccc
Q 029860 101 HFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLL 142 (186)
Q Consensus 101 ~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L~~~P~Ll 142 (186)
.|..|.+|. +.++....++||++|.|..+=....-+|+-+
T Consensus 54 ~V~~GQ~l~--~~~g~~~~vHaP~sG~V~~I~~~~~~~~sgl 93 (529)
T COG4656 54 KVLKGQPLT--RGEGIMLPVHAPTSGTVTAIEPANFPHPSGL 93 (529)
T ss_pred EEeeCceee--ccCCceeeeeCCCCceeeeeeecccCCcccC
Confidence 455555555 3455778999999999999988777776644
No 83
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=21.99 E-value=1.2e+02 Score=26.41 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=29.1
Q ss_pred ceEeeeCCceEEEEec--CC-eeeEeeeeceEEEeeehhhh
Q 029860 99 AQHFESNTAVCKVCTN--ND-SYIVRCCVKGSLLEVNNRLI 136 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~--~~-~~~I~spV~G~vvEvN~~L~ 136 (186)
+..|++|+.|++|... +. .-+++||.+|.|+.++....
T Consensus 247 G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~~~p~ 287 (298)
T cd06253 247 GDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLREYPL 287 (298)
T ss_pred CCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEeecCCe
Confidence 4568889999999653 33 56899999999999876543
No 84
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=20.99 E-value=63 Score=27.82 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=16.1
Q ss_pred eeeEeeeeceEEEeeehhh
Q 029860 117 SYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 117 ~~~I~spV~G~vvEvN~~L 135 (186)
.+.|+||++|.|.+++-..
T Consensus 204 ~~~I~AP~~G~V~~~~~~~ 222 (334)
T TIGR00998 204 RTVIRAPFDGYVARRFVQV 222 (334)
T ss_pred CcEEEcCCCcEEEEEecCC
Confidence 4689999999999998553
No 85
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=20.95 E-value=1.5e+02 Score=24.11 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=13.1
Q ss_pred eEeeeeceEEEeeeh
Q 029860 119 IVRCCVKGSLLEVNN 133 (186)
Q Consensus 119 ~I~spV~G~vvEvN~ 133 (186)
.|.||+.|+|+++.+
T Consensus 36 ~ivSPaDG~v~~i~~ 50 (189)
T TIGR00164 36 AVLSPADGRIDVVER 50 (189)
T ss_pred EEEeCCCcEEEEEEe
Confidence 399999999999865
No 86
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=20.71 E-value=1.6e+02 Score=24.02 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=11.7
Q ss_pred eEeeeeceEEEee
Q 029860 119 IVRCCVKGSLLEV 131 (186)
Q Consensus 119 ~I~spV~G~vvEv 131 (186)
.|.||..|+|+.+
T Consensus 22 ~ivSPaDG~v~~~ 34 (202)
T PF02666_consen 22 AIVSPADGKVLVI 34 (202)
T ss_pred EEEeCcCcEEEee
Confidence 4999999999998
Done!