Query 029860
Match_columns 186
No_of_seqs 119 out of 1098
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 07:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3klr_A Glycine cleavage system 100.0 1E-32 3.4E-37 213.0 13.9 114 41-180 6-121 (125)
2 3hgb_A Glycine cleavage system 100.0 1.5E-32 5.2E-37 218.5 11.8 119 41-180 32-154 (155)
3 3tzu_A GCVH, glycine cleavage 100.0 3.1E-32 1.1E-36 213.2 8.9 114 41-180 17-135 (137)
4 3mxu_A Glycine cleavage system 100.0 1.4E-32 4.6E-37 216.4 6.2 113 41-179 28-142 (143)
5 3a7l_A H-protein, glycine clea 100.0 5.6E-30 1.9E-34 198.3 13.5 115 41-180 10-126 (128)
6 1onl_A Glycine cleavage system 100.0 1.9E-29 6.6E-34 195.3 13.5 116 41-182 10-127 (128)
7 1hpc_A H protein of the glycin 100.0 3.3E-29 1.1E-33 194.7 13.8 115 41-181 10-126 (131)
8 1zko_A Glycine cleavage system 100.0 1.6E-27 5.5E-32 186.3 14.3 114 41-180 19-134 (136)
9 2kcc_A Acetyl-COA carboxylase 96.4 0.0049 1.7E-07 42.9 5.0 36 99-135 24-59 (84)
10 1z6h_A Biotin/lipoyl attachmen 96.3 0.0059 2E-07 40.5 4.6 35 100-134 19-53 (72)
11 1gjx_A Pyruvate dehydrogenase; 96.2 0.0017 5.7E-08 44.5 1.8 51 100-157 27-77 (81)
12 1qjo_A Dihydrolipoamide acetyl 96.2 0.0047 1.6E-07 42.0 4.1 38 98-135 24-61 (80)
13 2l5t_A Lipoamide acyltransfera 96.1 0.0036 1.2E-07 42.4 3.1 38 98-135 25-62 (77)
14 1k8m_A E2 component of branche 95.9 0.016 5.4E-07 41.2 5.8 38 98-135 28-65 (93)
15 3crk_C Dihydrolipoyllysine-res 95.9 0.011 3.7E-07 41.2 4.8 38 98-135 29-66 (87)
16 1dcz_A Transcarboxylase 1.3S s 95.7 0.018 6.1E-07 38.6 5.2 35 99-133 27-61 (77)
17 1ghj_A E2, E2, the dihydrolipo 95.7 0.012 4.1E-07 40.0 4.4 38 98-135 25-62 (79)
18 1bdo_A Acetyl-COA carboxylase; 95.7 0.012 4.2E-07 40.0 4.2 37 98-134 29-65 (80)
19 2d5d_A Methylmalonyl-COA decar 95.6 0.017 5.7E-07 38.2 4.7 35 99-133 24-58 (74)
20 1iyu_A E2P, dihydrolipoamide a 95.6 0.01 3.4E-07 40.4 3.6 37 99-135 23-59 (79)
21 2dnc_A Pyruvate dehydrogenase 95.1 0.028 9.6E-07 40.3 4.8 38 98-135 31-68 (98)
22 2jku_A Propionyl-COA carboxyla 95.0 0.011 3.7E-07 42.0 2.2 37 99-135 44-80 (94)
23 1y8o_B Dihydrolipoyllysine-res 94.7 0.041 1.4E-06 41.7 4.8 64 70-135 24-88 (128)
24 2ejm_A Methylcrotonoyl-COA car 94.5 0.047 1.6E-06 38.9 4.6 37 99-135 33-69 (99)
25 2dne_A Dihydrolipoyllysine-res 94.4 0.035 1.2E-06 40.6 3.8 38 98-135 31-68 (108)
26 2k7v_A Dihydrolipoyllysine-res 94.1 0.0088 3E-07 41.5 -0.1 38 99-136 21-58 (85)
27 1pmr_A Dihydrolipoyl succinylt 92.8 0.0097 3.3E-07 40.7 -1.6 38 98-135 26-63 (80)
28 2dn8_A Acetyl-COA carboxylase 92.1 0.16 5.6E-06 36.0 4.2 35 98-133 35-69 (100)
29 3d4r_A Domain of unknown funct 90.5 0.31 1E-05 38.8 4.6 37 98-134 118-155 (169)
30 2k32_A A; NMR {Campylobacter j 88.8 0.29 9.8E-06 35.2 3.0 36 99-134 20-84 (116)
31 3n6r_A Propionyl-COA carboxyla 88.7 0.41 1.4E-05 45.1 4.8 37 98-134 630-666 (681)
32 3va7_A KLLA0E08119P; carboxyla 85.6 0.71 2.4E-05 46.6 4.7 37 98-134 1185-1221(1236)
33 1zy8_K Pyruvate dehydrogenase 84.8 0.18 6.1E-06 41.7 0.0 36 98-133 27-62 (229)
34 3hbl_A Pyruvate carboxylase; T 84.7 0.84 2.9E-05 45.7 4.7 38 98-135 1095-1132(1150)
35 3dva_I Dihydrolipoyllysine-res 82.6 0.25 8.6E-06 44.2 0.0 37 98-134 26-62 (428)
36 3u9t_A MCC alpha, methylcroton 79.9 0.36 1.2E-05 45.5 0.0 37 98-134 620-656 (675)
37 3bg3_A Pyruvate carboxylase, m 72.7 1.2 4E-05 42.6 1.4 36 98-133 667-702 (718)
38 2qf7_A Pyruvate carboxylase pr 69.5 1.9 6.3E-05 43.2 2.1 37 98-134 1113-1149(1165)
39 3na6_A Succinylglutamate desuc 65.5 6.3 0.00021 33.7 4.4 36 98-133 274-313 (331)
40 3cdx_A Succinylglutamatedesucc 63.8 7.2 0.00025 33.5 4.4 36 98-133 284-323 (354)
41 3fmc_A Putative succinylglutam 53.1 11 0.00036 32.8 3.7 37 98-134 307-349 (368)
42 3fpp_A Macrolide-specific effl 50.0 9.5 0.00033 31.7 2.8 19 118-136 154-172 (341)
43 3lnn_A Membrane fusion protein 50.0 15 0.00051 30.7 4.0 18 118-135 171-188 (359)
44 2f1m_A Acriflavine resistance 47.1 4.7 0.00016 32.6 0.4 18 118-135 131-148 (277)
45 3ne5_B Cation efflux system pr 45.8 19 0.00065 31.2 4.2 19 117-135 207-225 (413)
46 2qj8_A MLR6093 protein; struct 35.0 40 0.0014 28.3 4.4 36 98-133 274-313 (332)
47 3our_B EIIA, phosphotransferas 29.1 31 0.0011 27.4 2.5 15 119-133 73-87 (183)
48 2gpr_A Glucose-permease IIA co 29.0 28 0.00097 26.7 2.2 15 119-133 46-60 (154)
49 1ax3_A Iiaglc, glucose permeas 27.6 35 0.0012 26.4 2.5 14 119-132 51-64 (162)
50 1f3z_A EIIA-GLC, glucose-speci 26.9 37 0.0013 26.3 2.5 14 119-132 51-64 (161)
No 1
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=100.00 E-value=1e-32 Score=213.02 Aligned_cols=114 Identities=19% Similarity=0.374 Sum_probs=103.3
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+++|+|+... +++++||| |+|||+++|+|+||+|| +|. .++.|+++|+|++.+...+
T Consensus 6 t~~HeWv~~e--~~~~~vGI--Td~Aq~~lGdiv~velp~vG~------------------~v~~G~~~~~VES~K~~sd 63 (125)
T 3klr_A 6 TEKHEWVTTE--NGVGTVGI--SNFAQEALGDVVYCSLPEVGT------------------KLNKQEEFGALESVKAASE 63 (125)
T ss_dssp CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC------------------EECTTCEEEEEEESSCEEE
T ss_pred CCCCEEEEEc--CCEEEEee--CHHHHhhCCCeEEEEeCCCCC------------------EEcCCCEEEEEEEcceeee
Confidence 5799998765 45999999 99999999999999999 765 4789999999999999999
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeC-CccchhhhhccCCCHHHHHHHHh
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKRKRE 180 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~-~~~~~~~~~~~Lls~~eY~~~~~ 180 (186)
|+|||+|+|++||++|.++|+|||++||++|||+.+.+ +++++ +.||++++|.++++
T Consensus 64 i~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~~~e~----~~Ll~~~~Y~~~~~ 121 (125)
T 3klr_A 64 LYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNPSEL----DELMSEEAYEKYIK 121 (125)
T ss_dssp EECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESCGGGG----GGSBCHHHHHHHHH
T ss_pred eecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECCHHHH----HhcCCHHHHHHHHh
Confidence 99999999999999999999999999999999995554 56666 88999999999875
No 2
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=99.98 E-value=1.5e-32 Score=218.52 Aligned_cols=119 Identities=20% Similarity=0.253 Sum_probs=104.4
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+++|+|+.... +|+++||| |+|||+++|+|+||+|| +|+ .|+.|+++|+|+|.+.+.+
T Consensus 32 t~~HeWv~~eg-dg~~~VGI--Td~Aq~~LGdIvfVeLP~vG~------------------~v~~Gd~~~~VESvKa~sd 90 (155)
T 3hgb_A 32 TAEHEWIRRSG-DDTVRVGI--TDYAQSALGDVVFVQLPVIGT------------------AVTAGETFGEVESTKSVSD 90 (155)
T ss_dssp CTTSEEEEEEE-TTEEEEEE--CHHHHHHHCSEEEEECCCTTC------------------EECTTCEEEEEEESSCEEE
T ss_pred CCCCEEEEEcC-CcEEEEee--CHHHHHhcCCeEEEEcCCCCC------------------EEeCCCEEEEEEecceeee
Confidence 67999987764 66999999 99999999999999999 765 4788999999999999999
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeCCc---cchhhhhccCCCHHHHHHHHh
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKP---ADWLKIKSSLLGLEDYKRKRE 180 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~~~---~~~~~~~~~Lls~~eY~~~~~ 180 (186)
|||||+|+|++||++|.++|+|||++||++|||+.+.+.. ++.....+.|||+++|.++++
T Consensus 91 i~sPvsG~VvevN~~L~d~PeliN~dPyg~GWl~kik~~d~~~~~~~~el~~Ll~~~~Y~~~~~ 154 (155)
T 3hgb_A 91 LYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDAEAYRGTLT 154 (155)
T ss_dssp EECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEECCTTTSCCHHHHHTTSBCHHHHHHHCC
T ss_pred eecCcceEEEEEhhhhhhChHhhccCCCCCcEEEEEEECCcccccchhHHHhCCCHHHHHHHhc
Confidence 9999999999999999999999999999999999777652 122333489999999999864
No 3
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=99.97 E-value=3.1e-32 Score=213.18 Aligned_cols=114 Identities=18% Similarity=0.323 Sum_probs=102.7
Q ss_pred CCCccEEEEE----eCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecC
Q 029860 41 KPGHDQYVYR----HANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNN 115 (186)
Q Consensus 41 ~~~hdw~~~~----h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~ 115 (186)
+++|+|+... ..+++++||| |+|||+++|+|+||+|| +|+ .++.|+++|+|++.+
T Consensus 17 t~~HeWv~~~~~~~~e~~~~~VGI--Td~Aq~~lGdiv~VelP~vG~------------------~v~~G~~~~~VES~K 76 (137)
T 3tzu_A 17 TADHEWIDIAPGAATPDGPVRVGI--TSVAVEALGDLVFVQLPEVGE------------------TVSAGESCGEVESTK 76 (137)
T ss_dssp CTTSEEESCCTTCCCCSSCEEEEE--CHHHHHHHCSEEEEECCCTTC------------------EECTTSEEEEEEESS
T ss_pred CCCCEEEEccCcccccCCEEEEee--CHHHHhhcCCeEEEEcCCCCC------------------EEeCCCEEEEEEecc
Confidence 5789998632 2467999999 99999999999999999 765 478999999999999
Q ss_pred CeeeEeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeCCccchhhhhccCCCHHHHHHHHh
Q 029860 116 DSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPKPADWLKIKSSLLGLEDYKRKRE 180 (186)
Q Consensus 116 ~~~~I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~~~~~~~~~~~~Lls~~eY~~~~~ 180 (186)
.+.+|+|||+|+|++||++|.++|+|||++||++|||+.+.+. ++ +.||++++|.++++
T Consensus 77 ~~sdi~sPvsG~VvevN~~l~~~P~liN~dPy~~GWl~ki~~~--e~----~~Ll~~~~Y~~~~~ 135 (137)
T 3tzu_A 77 TVSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQPT--AV----GELLTASEYAGQNG 135 (137)
T ss_dssp EEEEEECSEEEEEEEECHHHHHCTHHHHHCTTTTTCCEEEEEE--EE----CCCBCHHHHHHHTT
T ss_pred eeeeeecCcceEEEEehhhhhcChhhhcCCCCcCCcEEEEEeh--hh----hhCCCHHHHHHHhc
Confidence 9999999999999999999999999999999999999977775 55 88999999999864
No 4
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=99.97 E-value=1.4e-32 Score=216.41 Aligned_cols=113 Identities=21% Similarity=0.333 Sum_probs=101.5
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+++|+|+... +++++||| |+|||+++|+|+||+|| +|+ .++.|+++|+|++.+.+.+
T Consensus 28 t~~HeWv~~e--g~~~~VGI--Td~Aq~~LGdIvfVelP~vG~------------------~v~~Gd~~~~VES~Ka~sd 85 (143)
T 3mxu_A 28 TQDHEWLSVE--GQVVTVGI--TDYAQEQLGDLVFIDLPQNGT------------------KLSKGDAAAVVESVKAASD 85 (143)
T ss_dssp CSSSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC------------------EECTTCEEEEEEESSCEEE
T ss_pred CCCCEEEEEc--CCEEEEee--CHHHHhhcCCeEEEEcCCCCC------------------EeeCCCEEEEEEecceeee
Confidence 4699998765 45999999 99999999999999999 765 4789999999999999999
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHH
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKR 179 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~~-~~~~~~~~~~Lls~~eY~~~~ 179 (186)
|+|||+|+|++||++|.++|+|||++||++|||+.+.+. ++++ +.||++++|.+++
T Consensus 86 i~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~~d~~el----~~Ll~~~~Y~~~~ 142 (143)
T 3mxu_A 86 VYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQDETQL----ERLLDEAAYKELI 142 (143)
T ss_dssp EECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEECSCTHHH----HHHHHTTSSEECC
T ss_pred eecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEECCHHHH----HhcCCHHHHHHHh
Confidence 999999999999999999999999999999999966654 5555 7899999998764
No 5
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=99.97 E-value=5.6e-30 Score=198.27 Aligned_cols=115 Identities=24% Similarity=0.318 Sum_probs=103.7
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+++|+|+... .||+++||| |+++|.++|+|++|++| +|. .|+.|++||+|++.+.+.+
T Consensus 10 t~~heWv~~~-~~g~~~vGi--td~a~~~lG~i~~v~lp~vG~------------------~V~~g~~l~~vEs~K~~~~ 68 (128)
T 3a7l_A 10 SKEHEWLRKE-ADGTYTVGI--TEHAQELLGDMVFVDLPEVGA------------------TVSAGDDCAVAESVKAASD 68 (128)
T ss_dssp CTTSEEEEEC-TTSCEEEEE--CHHHHHHHCSEEEEECCCTTC------------------EECTTCEEEEEEESSCEEE
T ss_pred cCCcEEEEEC-CCcEEEEEE--ehHHhccCCceEEEEecCCCC------------------EEeCCCEEEEEEecceeeE
Confidence 5789998654 577999999 99999999999999998 664 4899999999999999999
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeC-CccchhhhhccCCCHHHHHHHHh
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKRKRE 180 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~-~~~~~~~~~~~Lls~~eY~~~~~ 180 (186)
|+||++|+|++||.+|.++|++||++||++|||+.+.+ +++++ +.||++++|.++++
T Consensus 69 i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~~~~~----~~Ll~~~~Y~~~~~ 126 (128)
T 3a7l_A 69 IYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESEL----ESLLDATAYEALLE 126 (128)
T ss_dssp EECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCGGGG----GGCBCHHHHHHHHH
T ss_pred EecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECCHHHH----HhcCCHHHHHHHHh
Confidence 99999999999999999999999999999999996665 45555 88999999999876
No 6
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=99.96 E-value=1.9e-29 Score=195.28 Aligned_cols=116 Identities=27% Similarity=0.349 Sum_probs=103.8
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+++|+|+... +++++||| |+++|.++|+|++|++| +|. .|+.|++||+|++.+...+
T Consensus 10 t~~heWv~~~--~~~~~vGi--t~~a~~~lG~i~~v~lp~vG~------------------~V~~g~~l~~vEs~K~~~~ 67 (128)
T 1onl_A 10 TKTHEWALPE--GDTVLVGI--TDYAQDALGDVVYVELPEVGR------------------VVEKGEAVAVVESVKTASD 67 (128)
T ss_dssp CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECBCTTC------------------EECTTCEEEEEEESSBEEE
T ss_pred CCCcEEEEec--CCEEEEEe--ehHHhhcCCCceEEEecCCCC------------------EEeCCCEEEEEEEcceeeE
Confidence 5789998765 34999999 99999999999999998 664 4899999999999999999
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeC-CccchhhhhccCCCHHHHHHHHhhh
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKRKREEC 182 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~-~~~~~~~~~~~Lls~~eY~~~~~~~ 182 (186)
|+||++|+|+++|.+|.++|++||++||++|||+.+.+ +++++ +.||++++|.++++..
T Consensus 68 i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~~~~----~~Ll~~~~Y~~~~~~~ 127 (128)
T 1onl_A 68 IYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDMGDL----DELLDAGGYQEVLESE 127 (128)
T ss_dssp EECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESCGGGG----GGSBCHHHHHHHHHHT
T ss_pred EecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECCHHHH----HhcCCHHHHHHHHhcc
Confidence 99999999999999999999999999999999996655 45566 8899999999987643
No 7
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=99.96 E-value=3.3e-29 Score=194.69 Aligned_cols=115 Identities=29% Similarity=0.456 Sum_probs=103.7
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+++|+|+... +++++||| |+++|.++|+|++|++| +|. .|+.|++||+|++.+...+
T Consensus 10 t~~HeWv~~e--~~~~~vGi--td~a~~~lG~i~~v~lp~~G~------------------~V~~g~~l~~vEs~K~~~~ 67 (131)
T 1hpc_A 10 APSHEWVKHE--GSVATIGI--TDHAQDHLGEVVFVELPEPGV------------------SVTKGKGFGAVESVKATSD 67 (131)
T ss_dssp CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC------------------EECBTSEEEEEEESSCEEE
T ss_pred CCCCEEEEEc--CCEEEEEE--ehhhcccCCCceEEEecCCCC------------------EEeCCCEEEEEEecceeEE
Confidence 5789998765 56999999 99999999999999997 664 5899999999999999999
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeC-CccchhhhhccCCCHHHHHHHHhh
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP-KPADWLKIKSSLLGLEDYKRKREE 181 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~-~~~~~~~~~~~Lls~~eY~~~~~~ 181 (186)
|+||++|+|++||..|.++|++||++||++|||+.+.+ +++++ +.||++++|.++++-
T Consensus 68 I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~~~~~----~~Ll~~~~Y~~~~~~ 126 (131)
T 1hpc_A 68 VNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDEL----ESLLGAKEYTKFCEE 126 (131)
T ss_dssp EEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESSGGGG----GGSBCHHHHHHHHHH
T ss_pred EecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECCHHHH----HhcCCHHHHHHHHhh
Confidence 99999999999999999999999999999999996655 45556 889999999998763
No 8
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=99.95 E-value=1.6e-27 Score=186.26 Aligned_cols=114 Identities=21% Similarity=0.359 Sum_probs=103.0
Q ss_pred CCCccEEEEEeCCcEEEEeecCChHhHhcCCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeee
Q 029860 41 KPGHDQYVYRHANGLCVIGLAPTHVAFKDEGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYI 119 (186)
Q Consensus 41 ~~~hdw~~~~h~Ngi~~VGia~t~~a~~~~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~ 119 (186)
+++|.|+... +++++||| |++++.++|+|++|++| +|. .|+.|++||.|++.+...+
T Consensus 19 t~~HeWv~~e--~~~~~vGi--t~~a~~~lG~i~~V~lp~vGd------------------~V~~Gd~l~~VEs~K~~~e 76 (136)
T 1zko_A 19 TKTHEWVSIE--DKVATVGI--TNHAQEQLGDVVYVDLPEVGR------------------EVKKGEVVASIESVKAAAD 76 (136)
T ss_dssp CTTSEEEEEE--TTEEEEEE--CHHHHHHHCSEEEEECCCTTC------------------EECTTCEEEEEEESSCEEE
T ss_pred CCCCEEEEec--CCEEEEee--EhhhcccCCCcEEEEecCCCC------------------EEeCCCEEEEEEEccEeEE
Confidence 5799998765 56999999 99999999999999997 664 5899999999999999999
Q ss_pred EeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeCC-ccchhhhhccCCCHHHHHHHHh
Q 029860 120 VRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMPK-PADWLKIKSSLLGLEDYKRKRE 180 (186)
Q Consensus 120 I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~~-~~~~~~~~~~Lls~~eY~~~~~ 180 (186)
|+||++|+|+++|.+|.++|+++|++||++|||+.+.+. ++++ +.||++++|.++++
T Consensus 77 I~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~~~~~----~~Ll~~~~Y~~~~~ 134 (136)
T 1zko_A 77 VYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDEGEL----EDLLDEQAYQEFCA 134 (136)
T ss_dssp EECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESCGGGG----GGSBCHHHHHHHHH
T ss_pred EecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECCHHHH----HhCCCHHHHHHHHh
Confidence 999999999999999999999999999999999966654 5555 88999999999875
No 9
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=96.37 E-value=0.0049 Score=42.86 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=32.2
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
+..++.|++||.|++.+....|+||++|.|.+++ ..
T Consensus 24 Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~ 59 (84)
T 2kcc_A 24 GGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RP 59 (84)
T ss_dssp TEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CT
T ss_pred CCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CC
Confidence 3468999999999999999999999999999988 54
No 10
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.25 E-value=0.0059 Score=40.45 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=30.8
Q ss_pred eEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 100 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 100 ~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
..++.|++|+++++.+....|+||++|.|.++|-.
T Consensus 19 ~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~ 53 (72)
T 1z6h_A 19 DQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKK 53 (72)
T ss_dssp CEECTTCEEEEEEETTEEEEEECSSCEEEEEESSC
T ss_pred CEECCCCEEEEEECCccEEEEECCCCcEEEEEecC
Confidence 46889999999998888899999999999998743
No 11
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=96.22 E-value=0.0017 Score=44.53 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=40.1
Q ss_pred eEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhhhcCccccccCCCCCceEEEEeC
Q 029860 100 QHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLIKQPGLLNSSADREGYIAIIMP 157 (186)
Q Consensus 100 ~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L~~~P~Lln~~P~~~GWlaii~~ 157 (186)
..++.|++||.+++.+....|+||++|.|.++|-..-+.. ....||+.+.+
T Consensus 27 d~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v-------~~g~~l~~i~~ 77 (81)
T 1gjx_A 27 DTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKI-------SEGGLIVVVEA 77 (81)
T ss_dssp CBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEE-------CSSSCCCEECC
T ss_pred CEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEe-------CCCCEEEEEEe
Confidence 3578999999999999999999999999999987664432 22357776654
No 12
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=96.22 E-value=0.0047 Score=42.02 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=33.1
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..++.|++||++++.+....|+||++|.|.++|-..
T Consensus 24 ~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~ 61 (80)
T 1qjo_A 24 VGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNV 61 (80)
T ss_dssp TTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCT
T ss_pred CCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCC
Confidence 34578999999999999988999999999999988544
No 13
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=96.14 E-value=0.0036 Score=42.42 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=33.2
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..++.|++||.+++.+....|+||++|.|.++|-..
T Consensus 25 ~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 62 (77)
T 2l5t_A 25 EGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYRE 62 (77)
T ss_dssp TTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCT
T ss_pred CCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCC
Confidence 34578999999999999999999999999999988654
No 14
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=95.93 E-value=0.016 Score=41.18 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=33.6
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..++.|++||.+++.+....|+||.+|.|.+++-..
T Consensus 28 ~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~ 65 (93)
T 1k8m_A 28 EGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNL 65 (93)
T ss_dssp TTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCS
T ss_pred CcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCC
Confidence 34578999999999999999999999999999988654
No 15
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=95.90 E-value=0.011 Score=41.20 Aligned_cols=38 Identities=8% Similarity=0.059 Sum_probs=33.2
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..++.|++||.+++.+..+.|+||.+|.|.+++-.-
T Consensus 29 ~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 66 (87)
T 3crk_C 29 VGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPE 66 (87)
T ss_dssp TTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCT
T ss_pred CCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECC
Confidence 34578999999999999999999999999999987543
No 16
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=95.74 E-value=0.018 Score=38.63 Aligned_cols=35 Identities=9% Similarity=0.019 Sum_probs=30.5
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeeh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~ 133 (186)
+..++.|++|+++.+.+-...|+||++|.|.++|-
T Consensus 27 G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~ 61 (77)
T 1dcz_A 27 GDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLV 61 (77)
T ss_dssp TCEECTTSEEEEEEETTEEEEEECSSSEEEEEECC
T ss_pred cCEEcCCCEEEEEEccceeEEEECCCCEEEEEEec
Confidence 34689999999998877788999999999999873
No 17
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=95.73 E-value=0.012 Score=39.99 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=33.6
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..++.|++||.+++.+....|+||++|.|.++|-..
T Consensus 25 ~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 62 (79)
T 1ghj_A 25 PGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62 (79)
T ss_dssp TTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCT
T ss_pred CCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCC
Confidence 45678999999999999999999999999999988544
No 18
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=95.67 E-value=0.012 Score=39.97 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=32.8
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..++.|+.|+.+++.+....|+||++|.|.++|-.
T Consensus 29 ~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~ 65 (80)
T 1bdo_A 29 VGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVE 65 (80)
T ss_dssp TTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSC
T ss_pred CcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcC
Confidence 4568999999999999888899999999999998843
No 19
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=95.62 E-value=0.017 Score=38.24 Aligned_cols=35 Identities=3% Similarity=-0.060 Sum_probs=30.8
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeeh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~ 133 (186)
+..++.|++|+++++.+....|+||++|.|.++|-
T Consensus 24 G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~ 58 (74)
T 2d5d_A 24 GDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILV 58 (74)
T ss_dssp TCEECTTCEEEEEEETTEEEEEECSSSEEEEEECC
T ss_pred CCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEc
Confidence 44689999999999888888999999999998873
No 20
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=95.62 E-value=0.01 Score=40.37 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=32.5
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
+..++.|++|+++++.+....|+||++|.|.++|-..
T Consensus 23 Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~ 59 (79)
T 1iyu_A 23 GDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59 (79)
T ss_dssp TCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCT
T ss_pred CCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCC
Confidence 4568999999999999989999999999999988544
No 21
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.11 E-value=0.028 Score=40.31 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=32.8
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..++.|++||.+++.+....|.||.+|.|.+++-.-
T Consensus 31 ~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~ 68 (98)
T 2dnc_A 31 EGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 68 (98)
T ss_dssp TTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCT
T ss_pred CCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCC
Confidence 34578999999999999999999999999999876543
No 22
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=94.99 E-value=0.011 Score=41.99 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=12.6
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
+..++.|++|+++++.+....|+||++|.|.++|-..
T Consensus 44 Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~ 80 (94)
T 2jku_A 44 GDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQA 80 (94)
T ss_dssp TCCCCTTCCCEEEEC----------------------
T ss_pred CCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCC
Confidence 3458899999999988888899999999999887543
No 23
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=94.66 E-value=0.041 Score=41.72 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=43.5
Q ss_pred CCCEEEEEcC-CCCcccCCceeeCccccCcceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 70 EGGITAVDFN-VGKSDRSGFKVTGKRKKQNAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 70 ~g~I~~V~l~-vg~~~r~~~~v~gk~K~~g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
+-.+..|.+| .|..... -++.--.++ .+..|+.|++||.|++.+....|.||.+|+|.+++-.-
T Consensus 24 ~p~~~~i~~P~lG~~~~~-G~V~~~~V~-~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~ 88 (128)
T 1y8o_B 24 YPPHMQVLLPALSPTMTM-GTVQRWEKK-VGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 88 (128)
T ss_dssp CCSEEEEECCCSSTTCSE-EEEEEECSC-TTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCT
T ss_pred CCcceeEEcCCCCCCccc-EEEEEEecC-CCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCC
Confidence 3445566677 5543211 011111122 45689999999999999999999999999999987544
No 24
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=94.46 E-value=0.047 Score=38.89 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=32.1
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
+..|+.|++|+++++.+....|+||++|.|.++|-..
T Consensus 33 Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~ 69 (99)
T 2ejm_A 33 GDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYRE 69 (99)
T ss_dssp TEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCT
T ss_pred CCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCC
Confidence 4568999999999988888899999999999988443
No 25
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=94.41 E-value=0.035 Score=40.59 Aligned_cols=38 Identities=5% Similarity=0.023 Sum_probs=33.1
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..|+.|++||.|++.+....|.||.+|.|.+++-..
T Consensus 31 ~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~ 68 (108)
T 2dne_A 31 EGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAE 68 (108)
T ss_dssp TTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCT
T ss_pred CCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCC
Confidence 45678999999999999999999999999999876543
No 26
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=94.07 E-value=0.0088 Score=41.46 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=33.4
Q ss_pred ceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhhh
Q 029860 99 AQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRLI 136 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L~ 136 (186)
+..++.|++|+.+++.+....|+||++|.|.++|-..-
T Consensus 21 Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G 58 (85)
T 2k7v_A 21 GDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVG 58 (85)
T ss_dssp SCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTT
T ss_pred CCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCC
Confidence 44689999999999999999999999999999987654
No 27
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=92.78 E-value=0.0097 Score=40.70 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=32.6
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..++.|++||.+++.+....|+||.+|.|.+++-..
T Consensus 26 ~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 63 (80)
T 1pmr_A 26 PGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63 (80)
T ss_dssp TTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCT
T ss_pred CcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCC
Confidence 44578999999999999888999999999999877543
No 28
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.15 E-value=0.16 Score=36.02 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=30.5
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeeh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~ 133 (186)
.+..+++|++|+.+++.+....|+||.+|.|. ++-
T Consensus 35 ~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v 69 (100)
T 2dn8_A 35 DGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIK 69 (100)
T ss_dssp TTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECS
T ss_pred CcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEe
Confidence 34578999999999998888999999999998 763
No 29
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=90.54 E-value=0.31 Score=38.79 Aligned_cols=37 Identities=11% Similarity=0.069 Sum_probs=31.5
Q ss_pred cceEeeeCCceEEEEecCC-eeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNND-SYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~-~~~I~spV~G~vvEvN~~ 134 (186)
.+-.|+.|+.||.|.+.++ +--++||++|.|+.||+.
T Consensus 118 ~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~ 155 (169)
T 3d4r_A 118 FGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI 155 (169)
T ss_dssp CSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred cCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence 3456888999999988766 579999999999999976
No 30
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=88.76 E-value=0.29 Score=35.23 Aligned_cols=36 Identities=3% Similarity=0.089 Sum_probs=27.9
Q ss_pred ceEeeeCCceEEEEecCC-----------------------------eeeEeeeeceEEEeeehh
Q 029860 99 AQHFESNTAVCKVCTNND-----------------------------SYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 99 ~~~ve~~~~l~~v~s~~~-----------------------------~~~I~spV~G~vvEvN~~ 134 (186)
+..|+.|++|+++.+... ...|+||++|.|.++|-.
T Consensus 20 G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~ 84 (116)
T 2k32_A 20 GDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVN 84 (116)
T ss_dssp TSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCC
T ss_pred cCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECC
Confidence 346888999999976532 358999999999987643
No 31
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=88.75 E-value=0.41 Score=45.12 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=33.4
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..|+.|++|+.|++.+-+.+|.||.+|+|.+++-.
T Consensus 630 ~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~ 666 (681)
T 3n6r_A 630 VGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINAS 666 (681)
T ss_dssp TTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCC
T ss_pred CCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeC
Confidence 5678999999999999999999999999999998744
No 32
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=85.56 E-value=0.71 Score=46.61 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=33.4
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..|+.|++||.|++.+-+.+|.||++|+|.+++-.
T Consensus 1185 ~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~ 1221 (1236)
T 3va7_A 1185 VGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHK 1221 (1236)
T ss_dssp TTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCC
T ss_pred CCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeC
Confidence 5668999999999999999999999999999998743
No 33
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=84.84 E-value=0.18 Score=41.66 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=0.0
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeeh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~ 133 (186)
.+..|+.|++||+|++++....|.||.+|.|.+++-
T Consensus 27 ~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v 62 (229)
T 1zy8_K 27 EGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVV 62 (229)
T ss_dssp ------------------------------------
T ss_pred CCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEe
Confidence 345689999999999999999999999999877653
No 34
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=84.69 E-value=0.84 Score=45.65 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=33.7
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehhh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~L 135 (186)
.+..|+.|++||.|++.+-...|.||++|+|.+++-.-
T Consensus 1095 ~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~ 1132 (1150)
T 3hbl_A 1095 VGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNN 1132 (1150)
T ss_dssp TTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCT
T ss_pred CCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCC
Confidence 45679999999999999999999999999999987543
No 35
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=82.58 E-value=0.25 Score=44.23 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=0.0
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..|+.|++||+|++.+....|.||.+|+|.++.-.
T Consensus 26 ~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~ 62 (428)
T 3dva_I 26 PGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVP 62 (428)
T ss_dssp -------------------------------------
T ss_pred CCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeC
Confidence 3446899999999999999999999999999876544
No 36
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=79.93 E-value=0.36 Score=45.50 Aligned_cols=37 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..|+.|++||.|++.+-+.+|.||.+|+|.+++-.
T Consensus 620 ~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~ 656 (675)
T 3u9t_A 620 PGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCS 656 (675)
T ss_dssp -------------------------------------
T ss_pred CCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeC
Confidence 4567999999999999999999999999999988654
No 37
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=72.67 E-value=1.2 Score=42.59 Aligned_cols=36 Identities=11% Similarity=0.251 Sum_probs=31.6
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeeh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~ 133 (186)
.+..|+.|++||.+++.+-...|.||.+|+|.+++-
T Consensus 667 ~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v 702 (718)
T 3bg3_A 667 AGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHV 702 (718)
T ss_dssp TTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCC
T ss_pred CCCeeCCCCEEEEEecccceeEEecCCCeEEEEEec
Confidence 456789999999999999999999999999988763
No 38
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=69.54 E-value=1.9 Score=43.25 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=26.9
Q ss_pred cceEeeeCCceEEEEecCCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCTNNDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~~~~~~I~spV~G~vvEvN~~ 134 (186)
.+..|+.|++||.+++.+-...|.||.+|+|.+++-.
T Consensus 1113 ~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~ 1149 (1165)
T 2qf7_A 1113 SGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVK 1149 (1165)
T ss_dssp SCCCC---CEEEEEEC---CEEEECCSSCCCCEECCC
T ss_pred CcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeC
Confidence 4567899999999999998999999999999988754
No 39
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=65.47 E-value=6.3 Score=33.65 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=29.8
Q ss_pred cceEeeeCCceEEEEec---C-CeeeEeeeeceEEEeeeh
Q 029860 98 NAQHFESNTAVCKVCTN---N-DSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~---~-~~~~I~spV~G~vvEvN~ 133 (186)
.+..|++|++|++|... + ...+|+||.+|.|+..+.
T Consensus 274 ~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~ 313 (331)
T 3na6_A 274 LGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF 313 (331)
T ss_dssp TTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC
T ss_pred CCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC
Confidence 45568899999999874 3 358999999999999876
No 40
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=63.77 E-value=7.2 Score=33.47 Aligned_cols=36 Identities=3% Similarity=-0.114 Sum_probs=29.6
Q ss_pred cceEeeeCCceEEEEec----CCeeeEeeeeceEEEeeeh
Q 029860 98 NAQHFESNTAVCKVCTN----NDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~----~~~~~I~spV~G~vvEvN~ 133 (186)
.+..|++|++|+.|... +...+|+||.+|.|+..+.
T Consensus 284 ~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~~ 323 (354)
T 3cdx_A 284 VGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAG 323 (354)
T ss_dssp TTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEEC
T ss_pred CCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEeC
Confidence 45678899999999874 3358999999999998873
No 41
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=53.08 E-value=11 Score=32.84 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=30.5
Q ss_pred cceEeeeCCceEEEEe--c----CCeeeEeeeeceEEEeeehh
Q 029860 98 NAQHFESNTAVCKVCT--N----NDSYIVRCCVKGSLLEVNNR 134 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s--~----~~~~~I~spV~G~vvEvN~~ 134 (186)
-+..|++|++|++|.. . ....+|+||.+|.|+..+..
T Consensus 307 lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~ 349 (368)
T 3fmc_A 307 VGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFAS 349 (368)
T ss_dssp TTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSS
T ss_pred CCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCC
Confidence 3456889999999987 3 34689999999999999875
No 42
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=50.03 E-value=9.5 Score=31.65 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=16.0
Q ss_pred eeEeeeeceEEEeeehhhh
Q 029860 118 YIVRCCVKGSLLEVNNRLI 136 (186)
Q Consensus 118 ~~I~spV~G~vvEvN~~L~ 136 (186)
..|+||++|.|.++|-..-
T Consensus 154 ~~i~AP~~G~V~~~~~~~G 172 (341)
T 3fpp_A 154 TRIVAPMAGEVTQITTLQG 172 (341)
T ss_dssp SEEECSSSEEEEEESSCTT
T ss_pred CEEECCCCeEEEEEecCCC
Confidence 5699999999999986553
No 43
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=49.98 E-value=15 Score=30.69 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=15.7
Q ss_pred eeEeeeeceEEEeeehhh
Q 029860 118 YIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 118 ~~I~spV~G~vvEvN~~L 135 (186)
..|+||++|.|.++|-..
T Consensus 171 ~~i~AP~~G~V~~~~~~~ 188 (359)
T 3lnn_A 171 LAVRSPINGRVVDLNAAT 188 (359)
T ss_dssp EEEECSSCEEEEECCCCB
T ss_pred EEEECCCCEEEEEeecCC
Confidence 579999999999998655
No 44
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=47.12 E-value=4.7 Score=32.59 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=15.1
Q ss_pred eeEeeeeceEEEeeehhh
Q 029860 118 YIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 118 ~~I~spV~G~vvEvN~~L 135 (186)
..|+||++|.|.++|-..
T Consensus 131 ~~I~AP~~G~V~~~~~~~ 148 (277)
T 2f1m_A 131 TKVTSPISGRIGKSNVTE 148 (277)
T ss_dssp TEECCSSCEEECCCSSCB
T ss_pred CEEECCCCeEEEeEEcCC
Confidence 489999999999987543
No 45
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=45.83 E-value=19 Score=31.24 Aligned_cols=19 Identities=11% Similarity=0.347 Sum_probs=16.4
Q ss_pred eeeEeeeeceEEEeeehhh
Q 029860 117 SYIVRCCVKGSLLEVNNRL 135 (186)
Q Consensus 117 ~~~I~spV~G~vvEvN~~L 135 (186)
.+.|+||++|.|.++|-..
T Consensus 207 ~~~I~AP~~G~V~~~~v~~ 225 (413)
T 3ne5_B 207 RFTLKAPIDGVITAFDLRA 225 (413)
T ss_dssp EEEEECSSSEEEEECCCCT
T ss_pred cEEEEcCCCeEEEEEEcCC
Confidence 4699999999999998654
No 46
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=35.04 E-value=40 Score=28.32 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=28.7
Q ss_pred cceEeeeCCceEEEEec----CCeeeEeeeeceEEEeeeh
Q 029860 98 NAQHFESNTAVCKVCTN----NDSYIVRCCVKGSLLEVNN 133 (186)
Q Consensus 98 g~~~ve~~~~l~~v~s~----~~~~~I~spV~G~vvEvN~ 133 (186)
.+..|++|+.|+++... ...-+|+||.+|.|+..+.
T Consensus 274 ~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~~ 313 (332)
T 2qj8_A 274 VMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIRS 313 (332)
T ss_dssp TTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEEC
T ss_pred CCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEeC
Confidence 35568889999999653 2356899999999999984
No 47
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=29.06 E-value=31 Score=27.44 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=13.1
Q ss_pred eEeeeeceEEEeeeh
Q 029860 119 IVRCCVKGSLLEVNN 133 (186)
Q Consensus 119 ~I~spV~G~vvEvN~ 133 (186)
.||||++|+|..+-+
T Consensus 73 ~v~AP~dG~V~~vfp 87 (183)
T 3our_B 73 KMVAPVNGTIGKIFE 87 (183)
T ss_dssp EEECSSSEEEEEECT
T ss_pred EEEeCCCeEEEEECC
Confidence 399999999998865
No 48
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=28.96 E-value=28 Score=26.69 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=13.1
Q ss_pred eEeeeeceEEEeeeh
Q 029860 119 IVRCCVKGSLLEVNN 133 (186)
Q Consensus 119 ~I~spV~G~vvEvN~ 133 (186)
.+|||++|+|..+-+
T Consensus 46 ~v~AP~~G~V~~v~~ 60 (154)
T 2gpr_A 46 DFHAPVSGKLVTAFP 60 (154)
T ss_dssp EEECSSCEEEEECCT
T ss_pred cEECCCCeEEEEEcc
Confidence 599999999999853
No 49
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=27.62 E-value=35 Score=26.42 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=12.6
Q ss_pred eEeeeeceEEEeee
Q 029860 119 IVRCCVKGSLLEVN 132 (186)
Q Consensus 119 ~I~spV~G~vvEvN 132 (186)
.+|||++|+|..+-
T Consensus 51 ~v~AP~~G~V~~v~ 64 (162)
T 1ax3_A 51 IVVSPVRGKILNVF 64 (162)
T ss_dssp EEEESCCEEEEECC
T ss_pred cEECCCCeEEEEEc
Confidence 49999999999985
No 50
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=26.90 E-value=37 Score=26.29 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=12.8
Q ss_pred eEeeeeceEEEeee
Q 029860 119 IVRCCVKGSLLEVN 132 (186)
Q Consensus 119 ~I~spV~G~vvEvN 132 (186)
.+|||++|+|..+-
T Consensus 51 ~v~AP~~G~V~~v~ 64 (161)
T 1f3z_A 51 KMVAPVDGTIGKIF 64 (161)
T ss_dssp EEECSSSEEEEEEC
T ss_pred cEECCCCeEEEEEc
Confidence 49999999999996
Done!