Query 029861
Match_columns 186
No_of_seqs 97 out of 99
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 07:16:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jrp_A Putative cytoplasmic pr 89.8 0.0075 2.6E-07 44.3 -4.8 48 43-102 2-49 (81)
2 2jne_A Hypothetical protein YF 75.6 0.096 3.3E-06 40.0 -4.2 51 39-101 28-78 (101)
3 2ea5_A Cell growth regulator w 71.1 1.6 5.6E-05 29.3 1.5 42 68-109 15-61 (68)
4 2vje_B MDM4 protein; proto-onc 66.7 1.2 4.1E-05 29.3 0.0 43 66-108 5-58 (63)
5 2rnj_A Response regulator prot 56.3 1.6 5.6E-05 30.0 -0.8 56 117-172 18-82 (91)
6 2vje_A E3 ubiquitin-protein li 54.2 2.4 8.3E-05 27.9 -0.2 44 65-108 5-59 (64)
7 2ecg_A Baculoviral IAP repeat- 50.6 6.4 0.00022 26.2 1.5 24 84-107 45-69 (75)
8 2q1z_A RPOE, ECF SIGE; ECF sig 44.5 17 0.00058 26.6 3.1 45 118-162 125-175 (184)
9 1or7_A Sigma-24, RNA polymeras 43.6 11 0.00038 27.7 2.0 31 118-148 130-161 (194)
10 1x3u_A Transcriptional regulat 43.3 8.5 0.00029 25.0 1.1 52 120-171 8-68 (79)
11 2cup_A Skeletal muscle LIM-pro 43.2 1.6 5.3E-05 30.4 -2.7 62 42-105 4-77 (101)
12 2yho_A E3 ubiquitin-protein li 39.6 11 0.00037 25.8 1.3 41 68-108 18-63 (79)
13 3gox_A Restriction endonucleas 39.3 7.4 0.00025 32.7 0.4 23 83-105 103-148 (200)
14 4ic3_A E3 ubiquitin-protein li 39.2 11 0.00039 25.0 1.3 25 83-107 43-68 (74)
15 3vk6_A E3 ubiquitin-protein li 38.9 7.2 0.00025 29.6 0.3 26 83-108 21-51 (101)
16 3hug_A RNA polymerase sigma fa 38.6 11 0.00039 25.6 1.3 28 117-144 26-54 (92)
17 2apo_B Ribosome biogenesis pro 38.0 12 0.00042 25.7 1.3 28 68-109 6-33 (60)
18 2l7x_A Envelope glycoprotein; 36.6 7.8 0.00027 28.2 0.1 14 67-80 4-17 (77)
19 2o8x_A Probable RNA polymerase 36.5 8.9 0.00031 24.1 0.4 26 118-143 5-31 (70)
20 3mzy_A RNA polymerase sigma-H 35.4 18 0.00061 25.5 1.9 27 118-144 98-125 (164)
21 3c57_A Two component transcrip 34.4 4.7 0.00016 28.2 -1.3 49 117-165 16-73 (95)
22 1vq8_1 50S ribosomal protein L 33.0 7.3 0.00025 26.9 -0.5 24 68-102 17-40 (57)
23 2lcq_A Putative toxin VAPC6; P 31.4 5.7 0.00019 30.5 -1.4 21 84-104 132-158 (165)
24 2zkr_2 60S ribosomal protein L 31.0 12 0.0004 28.3 0.3 28 68-106 16-43 (97)
25 2aus_D NOP10, ribosome biogene 27.8 26 0.00089 24.1 1.6 28 68-109 5-32 (60)
26 3t6p_A Baculoviral IAP repeat- 27.4 11 0.00037 33.1 -0.5 41 68-108 295-340 (345)
27 3j21_e 50S ribosomal protein L 27.4 22 0.00076 24.8 1.2 25 68-103 17-41 (62)
28 3cao_A Cytochrome C3; tetrahem 27.0 22 0.00076 25.4 1.2 55 45-101 35-100 (103)
29 2k0a_A PRE-mRNA-splicing facto 25.3 15 0.00052 28.2 0.0 28 59-93 53-81 (109)
30 1zbd_B Rabphilin-3A; G protein 23.8 14 0.00048 28.5 -0.4 35 67-103 54-89 (134)
31 2er8_A Regulatory protein Leu3 23.5 24 0.00081 23.1 0.7 29 70-98 5-37 (72)
32 3lrq_A E3 ubiquitin-protein li 22.6 71 0.0024 22.1 3.2 41 44-104 23-68 (100)
33 2ckl_B Ubiquitin ligase protei 21.9 46 0.0016 24.9 2.2 40 45-104 56-100 (165)
34 3iz5_l 60S ribosomal protein L 21.7 19 0.00066 27.0 0.0 16 92-107 29-44 (94)
35 1jm7_A BRCA1, breast cancer ty 21.4 47 0.0016 22.8 2.0 22 84-105 41-69 (112)
36 2zet_C Melanophilin; complex, 21.4 19 0.00065 28.4 -0.1 49 51-102 51-101 (153)
37 4ayc_A E3 ubiquitin-protein li 21.3 53 0.0018 24.1 2.3 22 84-105 73-98 (138)
38 4a18_A RPL37, ribosomal protei 20.8 18 0.00062 27.2 -0.3 15 92-106 29-43 (94)
39 1gyo_A Cytochrome C3, A dimeri 20.7 52 0.0018 24.0 2.2 49 45-102 35-105 (109)
No 1
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=89.83 E-value=0.0075 Score=44.31 Aligned_cols=48 Identities=31% Similarity=0.728 Sum_probs=39.8
Q ss_pred cCchhhhHHHHHHHHHhCCCCCCCCcccccccccchhhHHHHhcChhhHhhccccccccC
Q 029861 43 TGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCS 102 (186)
Q Consensus 43 ~gVCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k 102 (186)
+..|+.|...|+|.-+ ...|..|++-=...| .|+.|...+.+|..||.
T Consensus 2 ~~~CP~C~~~l~~~~~---------~~~C~~C~~~~~~~a---fCPeCgq~Le~lkACGA 49 (81)
T 2jrp_A 2 EITCPVCHHALERNGD---------TAHCETCAKDFSLQA---LCPDCRQPLQVLKACGA 49 (81)
T ss_dssp CCCCSSSCSCCEECSS---------EEECTTTCCEEEEEE---ECSSSCSCCCEEEETTE
T ss_pred CCCCCCCCCccccCCC---------ceECccccccCCCcc---cCcchhhHHHHHHhcCC
Confidence 4679999999999622 456999988766666 79999999999999984
No 2
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=75.63 E-value=0.096 Score=40.03 Aligned_cols=51 Identities=27% Similarity=0.654 Sum_probs=39.5
Q ss_pred CCCccCchhhhHHHHHHHHHhCCCCCCCCcccccccccchhhHHHHhcChhhHhhcccccccc
Q 029861 39 YPEITGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCC 101 (186)
Q Consensus 39 ~~~~~gVCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~ 101 (186)
...++..|+.|...|+|. ..-.-|..|.+--.+.| .|++|..++.+.-.||
T Consensus 28 ~~~M~~~CP~Cq~eL~~~---------g~~~hC~~C~~~f~~~a---~CPdC~q~LevLkACG 78 (101)
T 2jne_A 28 GSHMELHCPQCQHVLDQD---------NGHARCRSCGEFIEMKA---LCPDCHQPLQVLKACG 78 (101)
T ss_dssp ---CCCBCSSSCSBEEEE---------TTEEEETTTCCEEEEEE---ECTTTCSBCEEEEETT
T ss_pred cccccccCccCCCcceec---------CCEEECccccchhhccc---cCcchhhHHHHHHHhc
Confidence 345788999999999996 23456999988655555 5999999999999998
No 3
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.10 E-value=1.6 Score=29.30 Aligned_cols=42 Identities=29% Similarity=0.621 Sum_probs=31.2
Q ss_pred cccccccccchhhHH----HHh-cChhhHhhccccccccCCcccccC
Q 029861 68 PAKCQRCTKRAVRQA----YHN-LCPGCAKEQNVCAKCCSRVDRVIG 109 (186)
Q Consensus 68 p~KC~kC~qktVk~A----YH~-iC~~CA~~~~vCaKC~k~~e~i~~ 109 (186)
...|..|......-+ -|. +|..|+.....|+-|..+...++.
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFA 61 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEEC
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEE
Confidence 556777766554332 467 999999999999999988776543
No 4
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=66.72 E-value=1.2 Score=29.32 Aligned_cols=43 Identities=28% Similarity=0.551 Sum_probs=30.6
Q ss_pred CCcccccccccchhh------HHHHh-cChhhHhhcc----ccccccCCccccc
Q 029861 66 SEPAKCQRCTKRAVR------QAYHN-LCPGCAKEQN----VCAKCCSRVDRVI 108 (186)
Q Consensus 66 t~p~KC~kC~qktVk------~AYH~-iC~~CA~~~~----vCaKC~k~~e~i~ 108 (186)
.....|..|...... -=-|. .|..|+.... .|+-|..+.+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 58 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVI 58 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceE
Confidence 345678888775432 22366 7999999987 9999998876544
No 5
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=56.34 E-value=1.6 Score=30.01 Aligned_cols=56 Identities=25% Similarity=0.253 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhchhhccchhhhcccccccCCC---------CchhHHHHHHHHHHhHhHHHHHH
Q 029861 117 AEQKMLEAALKNARERDRRILLRAPTKIKLGNY---------FLPHHLRNMLQKAEVTKTITMVI 172 (186)
Q Consensus 117 ~eq~ele~~lk~l~ER~RRt~lR~~~k~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 172 (186)
.+...+.++|..|++|+|.-|.-+.+-....+| ++-.|+...++|+.+....-.+.
T Consensus 18 ~~~~~l~~~l~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~ 82 (91)
T 2rnj_A 18 SHMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVI 82 (91)
T ss_dssp -------CTGGGCCSHHHHHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 344577888999999999888775543333333 55667777777776654444443
No 6
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=54.24 E-value=2.4 Score=27.88 Aligned_cols=44 Identities=25% Similarity=0.533 Sum_probs=29.9
Q ss_pred CCCcccccccccchhhHH------HHh-cChhhHhhccc----cccccCCccccc
Q 029861 65 LSEPAKCQRCTKRAVRQA------YHN-LCPGCAKEQNV----CAKCCSRVDRVI 108 (186)
Q Consensus 65 Lt~p~KC~kC~qktVk~A------YH~-iC~~CA~~~~v----CaKC~k~~e~i~ 108 (186)
......|..|......-+ -|. .|..|+..... |+-|..+.+.++
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 59 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 59 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEE
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceE
Confidence 344556777766544332 355 79999998765 999998776554
No 7
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.55 E-value=6.4 Score=26.21 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=20.4
Q ss_pred Hh-cChhhHhhccccccccCCcccc
Q 029861 84 HN-LCPGCAKEQNVCAKCCSRVDRV 107 (186)
Q Consensus 84 H~-iC~~CA~~~~vCaKC~k~~e~i 107 (186)
|. .|..|+.....|+-|..+...+
T Consensus 45 H~~~C~~C~~~~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 45 HLVTCKQCAEAVDKCPMCYTVITFK 69 (75)
T ss_dssp CCCBCHHHHHHCSBCTTTCCBCCCC
T ss_pred CHHHHHHHhhCCCCCccCCceecCc
Confidence 66 8999999999999999876553
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=44.53 E-value=17 Score=26.59 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhchhhccchhh-hcccccccCCC-----CchhHHHHHHHHH
Q 029861 118 EQKMLEAALKNARERDRRILL-RAPTKIKLGNY-----FLPHHLRNMLQKA 162 (186)
Q Consensus 118 eq~ele~~lk~l~ER~RRt~l-R~~~k~~~~~~-----~~~~~~~~~~~~~ 162 (186)
....+.++|..|++++|.-|. ++++.....+| ..+.+.++.+..+
T Consensus 125 ~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra 175 (184)
T 2q1z_A 125 ENARLGRAIARLPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLA 175 (184)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344788999999999999985 57776666665 4455555555443
No 9
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=43.63 E-value=11 Score=27.75 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhchhhccchh-hhcccccccCC
Q 029861 118 EQKMLEAALKNARERDRRIL-LRAPTKIKLGN 148 (186)
Q Consensus 118 eq~ele~~lk~l~ER~RRt~-lR~~~k~~~~~ 148 (186)
....+.++|..|++++|.-| |++++.....+
T Consensus 130 ~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~E 161 (194)
T 1or7_A 130 LRQIVFRTIESLPEDLRMAITLRELDGLSYEE 161 (194)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHhHHHHHcCCCHHH
Confidence 44567899999999999999 66776543333
No 10
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.33 E-value=8.5 Score=24.99 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=33.2
Q ss_pred HHHHHHHhhchhhccchhhhcccccccCCC---------CchhHHHHHHHHHHhHhHHHHH
Q 029861 120 KMLEAALKNARERDRRILLRAPTKIKLGNY---------FLPHHLRNMLQKAEVTKTITMV 171 (186)
Q Consensus 120 ~ele~~lk~l~ER~RRt~lR~~~k~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 171 (186)
..+++.+..|++++|.-|.-+.+.....+| ++-.|+....+|+.+....-.+
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~ 68 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLV 68 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 367888999999999888765433222222 4556777777777664443333
No 11
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=43.16 E-value=1.6 Score=30.36 Aligned_cols=62 Identities=18% Similarity=0.532 Sum_probs=36.9
Q ss_pred ccCchhhhHHHHH---HHHHhC--CCCCCCCcccccccccchhhHHH-----HhcChhhHhhc--cccccccCCcc
Q 029861 42 ITGVCPRCKDQID---WKRRYG--KYKPLSEPAKCQRCTKRAVRQAY-----HNLCPGCAKEQ--NVCAKCCSRVD 105 (186)
Q Consensus 42 ~~gVCqRC~eiIe---WKvkY~--KYKPLt~p~KC~kC~qktVk~AY-----H~iC~~CA~~~--~vCaKC~k~~e 105 (186)
....|.+|.+.|. ..+... .|. ..-.+|..|...-....| ...|.+|..++ ..|++|+++..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H--~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWH--DTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEE--TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred CCCcCcccCCcccCCceEEEECccChh--hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 4567888887773 222211 122 245677777554332233 45799998875 68999987643
No 12
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=39.59 E-value=11 Score=25.79 Aligned_cols=41 Identities=29% Similarity=0.674 Sum_probs=29.1
Q ss_pred cccccccccchhhH----HHHh-cChhhHhhccccccccCCccccc
Q 029861 68 PAKCQRCTKRAVRQ----AYHN-LCPGCAKEQNVCAKCCSRVDRVI 108 (186)
Q Consensus 68 p~KC~kC~qktVk~----AYH~-iC~~CA~~~~vCaKC~k~~e~i~ 108 (186)
...|..|......- --|. .|..|+.....|+-|..+...++
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQ 63 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeE
Confidence 34566665544332 2366 89999999999999998777643
No 13
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=39.32 E-value=7.4 Score=32.71 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=18.2
Q ss_pred HHhcChhhHh------------------hc-----cccccccCCcc
Q 029861 83 YHNLCPGCAK------------------EQ-----NVCAKCCSRVD 105 (186)
Q Consensus 83 YH~iC~~CA~------------------~~-----~vCaKC~k~~e 105 (186)
|+..|.+|+. +. +.|+-|+.+..
T Consensus 103 l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~ 148 (200)
T 3gox_A 103 TRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSI 148 (200)
T ss_dssp ECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEE
T ss_pred cCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCC
Confidence 8888999975 33 68999998765
No 14
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=39.16 E-value=11 Score=25.04 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=20.9
Q ss_pred HHh-cChhhHhhccccccccCCcccc
Q 029861 83 YHN-LCPGCAKEQNVCAKCCSRVDRV 107 (186)
Q Consensus 83 YH~-iC~~CA~~~~vCaKC~k~~e~i 107 (186)
-|. .|..|+.....|+-|..+...+
T Consensus 43 gH~~~C~~C~~~~~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 43 GHLVTCKQCAEAVDKCPMCYTVITFK 68 (74)
T ss_dssp CCBCCCHHHHTTCSBCTTTCCBCSEE
T ss_pred CChhHHHHhhhcCccCCCcCcCccCc
Confidence 477 9999999999999998876543
No 15
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=38.94 E-value=7.2 Score=29.55 Aligned_cols=26 Identities=31% Similarity=0.715 Sum_probs=21.5
Q ss_pred HHhcChhhHhh-----ccccccccCCccccc
Q 029861 83 YHNLCPGCAKE-----QNVCAKCCSRVDRVI 108 (186)
Q Consensus 83 YH~iC~~CA~~-----~~vCaKC~k~~e~i~ 108 (186)
+|+.|-+||.. .+.|+.|..+...|.
T Consensus 21 kHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 21 KHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp CCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred cccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 79999999954 579999998877654
No 16
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=38.58 E-value=11 Score=25.61 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhchhhccchhhh-ccccc
Q 029861 117 AEQKMLEAALKNARERDRRILLR-APTKI 144 (186)
Q Consensus 117 ~eq~ele~~lk~l~ER~RRt~lR-~~~k~ 144 (186)
+....+.++|..|++++|.-|+- +++..
T Consensus 26 ~~~~~l~~~l~~L~~~~r~vl~l~~~~g~ 54 (92)
T 3hug_A 26 LDRLLIADALAQLSAEHRAVIQRSYYRGW 54 (92)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Confidence 34457889999999999999864 66543
No 17
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=37.95 E-value=12 Score=25.72 Aligned_cols=28 Identities=21% Similarity=0.541 Sum_probs=20.0
Q ss_pred cccccccccchhhHHHHhcChhhHhhccccccccCCcccccC
Q 029861 68 PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIG 109 (186)
Q Consensus 68 p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k~~e~i~~ 109 (186)
-.+|..|+..|. ..+|+.||.+....-|
T Consensus 6 mr~C~~CgvYTL--------------k~~CP~CG~~T~~~hP 33 (60)
T 2apo_B 6 MKKCPKCGLYTL--------------KEICPKCGEKTVIPKP 33 (60)
T ss_dssp CEECTTTCCEES--------------SSBCSSSCSBCBCCCC
T ss_pred ceeCCCCCCEec--------------cccCcCCCCcCCCCCC
Confidence 457888866665 5679999987665544
No 18
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=36.57 E-value=7.8 Score=28.15 Aligned_cols=14 Identities=29% Similarity=0.788 Sum_probs=11.9
Q ss_pred Ccccccccccchhh
Q 029861 67 EPAKCQRCTKRAVR 80 (186)
Q Consensus 67 ~p~KC~kC~qktVk 80 (186)
.|..|.+|.|++|.
T Consensus 4 kg~~C~kCEq~~vn 17 (77)
T 2l7x_A 4 KPQTCTICETTPVN 17 (77)
T ss_dssp CCCCCTTTCCCCSS
T ss_pred CCceeeeecccccc
Confidence 46789999999986
No 19
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=36.53 E-value=8.9 Score=24.12 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhchhhccchhh-hcccc
Q 029861 118 EQKMLEAALKNARERDRRILL-RAPTK 143 (186)
Q Consensus 118 eq~ele~~lk~l~ER~RRt~l-R~~~k 143 (186)
+..++.++|..|++++|.-|. ++++.
T Consensus 5 ~~~~l~~~l~~L~~~~r~il~l~~~~g 31 (70)
T 2o8x_A 5 DLVEVTTMIADLTTDQREALLLTQLLG 31 (70)
T ss_dssp HHHHHHTTTTSSCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 445788899999999999885 45544
No 20
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=35.36 E-value=18 Score=25.51 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=21.0
Q ss_pred HHHHHHHHHh-hchhhccchhhhccccc
Q 029861 118 EQKMLEAALK-NARERDRRILLRAPTKI 144 (186)
Q Consensus 118 eq~ele~~lk-~l~ER~RRt~lR~~~k~ 144 (186)
....+.++|. .|++++|.-|.++++..
T Consensus 98 ~~~~l~~~l~~~L~~~~r~v~~~~~~g~ 125 (164)
T 3mzy_A 98 EIEEFKKFSENNFSKFEKEVLTYLIRGY 125 (164)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHcCC
Confidence 3346778898 99999999999776543
No 21
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=34.35 E-value=4.7 Score=28.17 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhchhhccchhhhcccccccCCC---------CchhHHHHHHHHHHhH
Q 029861 117 AEQKMLEAALKNARERDRRILLRAPTKIKLGNY---------FLPHHLRNMLQKAEVT 165 (186)
Q Consensus 117 ~eq~ele~~lk~l~ER~RRt~lR~~~k~~~~~~---------~~~~~~~~~~~~~~~~ 165 (186)
++..++.++|..|++|+|.-|.-..+-....+| ++-.|+...++|+.+.
T Consensus 16 ~~~~~l~~~l~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 16 PRGSHMQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -----------CCCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 455578899999999999888776433222223 4555666666666543
No 22
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=32.98 E-value=7.3 Score=26.89 Aligned_cols=24 Identities=38% Similarity=1.055 Sum_probs=15.6
Q ss_pred cccccccccchhhHHHHhcChhhHhhccccccccC
Q 029861 68 PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCS 102 (186)
Q Consensus 68 p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k 102 (186)
.-.|-.|+.+ ||| .....||.||-
T Consensus 17 H~~CrRCG~~----syH-------~qK~~Ca~CGy 40 (57)
T 1vq8_1 17 HTKCRRCGEK----SYH-------TKKKVCSSCGF 40 (57)
T ss_dssp EEECTTTCSE----EEE-------TTTTEETTTCT
T ss_pred cccccccCCh----hhh-------ccccccccccC
Confidence 3445555543 566 35789999997
No 23
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=31.45 E-value=5.7 Score=30.48 Aligned_cols=21 Identities=38% Similarity=1.018 Sum_probs=15.6
Q ss_pred HhcChhhHhhcc------ccccccCCc
Q 029861 84 HNLCPGCAKEQN------VCAKCCSRV 104 (186)
Q Consensus 84 H~iC~~CA~~~~------vCaKC~k~~ 104 (186)
.-.|..|...+. .|+.||.+.
T Consensus 132 ~y~C~~Cg~~~~~~~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 132 RYVCIGCGRKFSTLPPGGVCPDCGSKV 158 (165)
T ss_dssp CEEESSSCCEESSCCGGGBCTTTCCBE
T ss_pred EEECCCCCCcccCCCCCCcCCCCCCcc
Confidence 445888887665 799999763
No 24
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=30.99 E-value=12 Score=28.27 Aligned_cols=28 Identities=36% Similarity=0.866 Sum_probs=19.5
Q ss_pred cccccccccchhhHHHHhcChhhHhhccccccccCCccc
Q 029861 68 PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDR 106 (186)
Q Consensus 68 p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k~~e~ 106 (186)
...|..|+.. +||. +...|++||-+...
T Consensus 16 H~lCrRCG~~----sfH~-------qK~~CgkCGYpa~k 43 (97)
T 2zkr_2 16 HTLCRRCGSK----AYHL-------QKSTCGKCGYPAKR 43 (97)
T ss_dssp EECCTTTCSS----CEET-------TSCCBTTTCTTTSS
T ss_pred CCcCCCCCCc----cCcC-------ccccCcccCCchHh
Confidence 4567777765 4563 67899999976543
No 25
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=27.80 E-value=26 Score=24.13 Aligned_cols=28 Identities=18% Similarity=0.565 Sum_probs=17.8
Q ss_pred cccccccccchhhHHHHhcChhhHhhccccccccCCcccccC
Q 029861 68 PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIG 109 (186)
Q Consensus 68 p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k~~e~i~~ 109 (186)
-.+|..|+..|. ..+|+.||.+....-|
T Consensus 5 mr~C~~Cg~YTL--------------k~~CP~CG~~t~~ahP 32 (60)
T 2aus_D 5 IRKCPKCGRYTL--------------KETCPVCGEKTKVAHP 32 (60)
T ss_dssp CEECTTTCCEES--------------SSBCTTTCSBCEESSC
T ss_pred ceECCCCCCEEc--------------cccCcCCCCccCCCCC
Confidence 356777765554 3578889887665443
No 26
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=27.43 E-value=11 Score=33.10 Aligned_cols=41 Identities=22% Similarity=0.576 Sum_probs=29.5
Q ss_pred cccccccccchhhH----HHHh-cChhhHhhccccccccCCccccc
Q 029861 68 PAKCQRCTKRAVRQ----AYHN-LCPGCAKEQNVCAKCCSRVDRVI 108 (186)
Q Consensus 68 p~KC~kC~qktVk~----AYH~-iC~~CA~~~~vCaKC~k~~e~i~ 108 (186)
...|..|......- ==|. .|..|+.....|+-|..+...++
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTV 340 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEE
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeE
Confidence 35677776654322 2377 99999999999999998766543
No 27
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.40 E-value=22 Score=24.85 Aligned_cols=25 Identities=28% Similarity=0.789 Sum_probs=16.7
Q ss_pred cccccccccchhhHHHHhcChhhHhhccccccccCC
Q 029861 68 PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSR 103 (186)
Q Consensus 68 p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k~ 103 (186)
.-.|-.|+.+ ||| .....||.||-+
T Consensus 17 H~lCrRCG~~----syH-------~qK~~Ca~CGyg 41 (62)
T 3j21_e 17 HIRCRRCGRV----SYN-------VKKGYCAACGFG 41 (62)
T ss_dssp CCBCSSSCSB----CEE-------TTTTEETTTCTT
T ss_pred eeeecccCcc----hhc-------cccccccccCCc
Confidence 4456666543 566 467899999973
No 28
>3cao_A Cytochrome C3; tetraheme, oxidised form, electron transport; HET: HEM; 1.60A {Desulfovibrio africanus} SCOP: a.138.1.1 PDB: 3car_A*
Probab=26.99 E-value=22 Score=25.38 Aligned_cols=55 Identities=25% Similarity=0.566 Sum_probs=38.1
Q ss_pred chhhhHHHHHHHHHhCCCCCCCCcccccccccch-------hhHHHHhcChhhHhhcc----cccccc
Q 029861 45 VCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRA-------VRQAYHNLCPGCAKEQN----VCAKCC 101 (186)
Q Consensus 45 VCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qkt-------Vk~AYH~iC~~CA~~~~----vCaKC~ 101 (186)
-|.-|+...+-. +. .|........|..|+.-. ...|||..|..|=.+.. .|+.|-
T Consensus 35 ~C~~CH~~~~~~-~~-~~~~~~~~~~C~~CH~~~~~~~~~~~~~a~H~~C~~CH~~~~~gp~~C~~CH 100 (103)
T 3cao_A 35 SCNACHHVWVNG-VL-AEDEDSVGTPCSDCHALEQDGDTPGLQDAYHQQCWGCHEKQAKGPVMCGECH 100 (103)
T ss_dssp CGGGTSCCEETT-EE-CSSCCCTTSCGGGTCCSSCBTTBCCHHHHHHHHHHHHHHHHTCSCCSHHHHS
T ss_pred chhhhCCCCCCC-cc-ccccCCCCCchhhhcCccccccccchhhhccChHHHHhHHhccCCCcccccc
Confidence 399999865211 11 345667778999998653 34899999999987754 466664
No 29
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=25.28 E-value=15 Score=28.25 Aligned_cols=28 Identities=29% Similarity=0.713 Sum_probs=22.0
Q ss_pred hCCCCCCCCcccccccc-cchhhHHHHhcChhhHhh
Q 029861 59 YGKYKPLSEPAKCQRCT-KRAVRQAYHNLCPGCAKE 93 (186)
Q Consensus 59 Y~KYKPLt~p~KC~kC~-qktVk~AYH~iC~~CA~~ 93 (186)
||+| ..+|+.|+ ...|..||. |..|..-
T Consensus 53 ~G~~-----~~rCIiCg~~~g~~dAYY--C~eC~~l 81 (109)
T 2k0a_A 53 FGKQ-----AKNCIICNLNVGVNDAFY--CWECCRL 81 (109)
T ss_dssp TSST-----TSBCTTTSSSBCCEECEE--CHHHHHH
T ss_pred CCCc-----CCceEEcCCCCCccccee--hHhhhhh
Confidence 7766 57899998 888888986 8888743
No 30
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.80 E-value=14 Score=28.50 Aligned_cols=35 Identities=26% Similarity=0.675 Sum_probs=24.1
Q ss_pred Ccccccccccch-hhHHHHhcChhhHhhccccccccCC
Q 029861 67 EPAKCQRCTKRA-VRQAYHNLCPGCAKEQNVCAKCCSR 103 (186)
Q Consensus 67 ~p~KC~kC~qkt-Vk~AYH~iC~~CA~~~~vCaKC~k~ 103 (186)
....|..|++.- ...+--.+|..|. ..||++||..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~--~~VC~~C~~~ 89 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCK--KNVCTKCGVE 89 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTC--CEEETTSEEE
T ss_pred CCccccccCCCcccccCCCCCCCCCC--cccccccCCc
Confidence 456788887655 2334456888884 6899999863
No 31
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=23.46 E-value=24 Score=23.07 Aligned_cols=29 Identities=28% Similarity=0.707 Sum_probs=16.3
Q ss_pred cccccccchhhHHHH----hcChhhHhhccccc
Q 029861 70 KCQRCTKRAVRQAYH----NLCPGCAKEQNVCA 98 (186)
Q Consensus 70 KC~kC~qktVk~AYH----~iC~~CA~~~~vCa 98 (186)
-|..|..+.|+=.-. ..|..|.....-|.
T Consensus 5 AC~~Cr~rK~kCd~~~~~~~~C~~C~~~~~~C~ 37 (72)
T 2er8_A 5 ACVECRQQKSKCDAHERAPEPCTKCAKKNVPCI 37 (72)
T ss_dssp CCHHHHHTTCCCCSGGGTTSCCHHHHHTTCCCC
T ss_pred hhHHHHhcccCCCCCCCCCCCCcccccCCCcCC
Confidence 355555555553333 56777777665543
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=22.57 E-value=71 Score=22.08 Aligned_cols=41 Identities=20% Similarity=0.629 Sum_probs=26.9
Q ss_pred CchhhhHHHHHHHHHhCCCCCCCCcccccccccchhhHHHHhcChhhHhhc-----cccccccCCc
Q 029861 44 GVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQ-----NVCAKCCSRV 104 (186)
Q Consensus 44 gVCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qktVk~AYH~iC~~CA~~~-----~vCaKC~k~~ 104 (186)
..|.-|.+.+. .|..|..|+ |+.|..|.... ..|+.|..+.
T Consensus 23 ~~C~IC~~~~~------------~p~~~~~Cg--------H~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 23 FRCFICMEKLR------------DARLCPHCS--------KLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp TBCTTTCSBCS------------SEEECTTTC--------CEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCccCCcccc------------CccccCCCC--------ChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 45777766542 355555564 67788887642 5899998764
No 33
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=21.93 E-value=46 Score=24.94 Aligned_cols=40 Identities=25% Similarity=0.840 Sum_probs=26.7
Q ss_pred chhhhHHHHHHHHHhCCCCCCCCcccccccccchhhHHHHhcChhhHhh-----ccccccccCCc
Q 029861 45 VCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKE-----QNVCAKCCSRV 104 (186)
Q Consensus 45 VCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qktVk~AYH~iC~~CA~~-----~~vCaKC~k~~ 104 (186)
.|+-|.+.+. .|.....|+ |+.|..|... ...|+-|..+.
T Consensus 56 ~C~IC~~~~~------------~p~~~~~Cg--------H~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 56 MCPICLDMLK------------NTMTTKECL--------HRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp BCTTTSSBCS------------SEEEETTTC--------CEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCcccChHhh------------CcCEeCCCC--------ChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 5888877642 244444554 7778888765 45699998764
No 34
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=21.71 E-value=19 Score=27.00 Aligned_cols=16 Identities=19% Similarity=0.605 Sum_probs=11.6
Q ss_pred hhccccccccCCcccc
Q 029861 92 KEQNVCAKCCSRVDRV 107 (186)
Q Consensus 92 ~~~~vCaKC~k~~e~i 107 (186)
.+...||.||-|...+
T Consensus 29 ~qK~~Ca~CGyps~r~ 44 (94)
T 3iz5_l 29 LQKSTCSSCGYPAARI 44 (94)
T ss_dssp GGGTEETTTCSSCSSC
T ss_pred cccccccccCCchhhc
Confidence 3568999999865443
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.37 E-value=47 Score=22.80 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=16.3
Q ss_pred HhcChhhHhhc-------cccccccCCcc
Q 029861 84 HNLCPGCAKEQ-------NVCAKCCSRVD 105 (186)
Q Consensus 84 H~iC~~CA~~~-------~vCaKC~k~~e 105 (186)
|+.|..|.... ..|+-|..+..
T Consensus 41 H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 41 HIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp CCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 77889997653 27999987654
No 36
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.36 E-value=19 Score=28.37 Aligned_cols=49 Identities=22% Similarity=0.490 Sum_probs=29.6
Q ss_pred HHHHHHHH-hCCCCCCCCcccccccccc-hhhHHHHhcChhhHhhccccccccC
Q 029861 51 DQIDWKRR-YGKYKPLSEPAKCQRCTKR-AVRQAYHNLCPGCAKEQNVCAKCCS 102 (186)
Q Consensus 51 eiIeWKvk-Y~KYKPLt~p~KC~kC~qk-tVk~AYH~iC~~CA~~~~vCaKC~k 102 (186)
+.+.||.. .++=.+. ....|..|++. ....+=-.+|.+|. ..||++|+.
T Consensus 51 ~~~~~k~~~~~~~~~~-~~~~C~~C~~~fg~l~~~g~~C~~C~--~~VC~~C~~ 101 (153)
T 2zet_C 51 QKESSKRELLSDTAHL-NETHCARCLQPYRLLLNSRRQCLECS--LFVCKSCSH 101 (153)
T ss_dssp HHHHHHHHHHTTSTTG-GGTBCTTTCCBGGGCSSCCEECTTTC--CEECGGGEE
T ss_pred HHHHHHhhhhcccccC-CCccchhhcCccccccCCCCcCCCCC--chhhccccc
Confidence 33566652 2321122 47889999875 22223345899984 689999983
No 37
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=21.29 E-value=53 Score=24.06 Aligned_cols=22 Identities=27% Similarity=0.774 Sum_probs=16.8
Q ss_pred HhcChhhHhh----ccccccccCCcc
Q 029861 84 HNLCPGCAKE----QNVCAKCCSRVD 105 (186)
Q Consensus 84 H~iC~~CA~~----~~vCaKC~k~~e 105 (186)
|+.|..|... ...|+-|.++..
T Consensus 73 H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 73 HSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp CEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 7788888764 467999987643
No 38
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=20.78 E-value=18 Score=27.15 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=10.8
Q ss_pred hhccccccccCCccc
Q 029861 92 KEQNVCAKCCSRVDR 106 (186)
Q Consensus 92 ~~~~vCaKC~k~~e~ 106 (186)
.+...||.||-|...
T Consensus 29 ~qK~~Ca~CGyps~r 43 (94)
T 4a18_A 29 KQKLRCAACGYPDAK 43 (94)
T ss_dssp TTTTEESSSCGGGSS
T ss_pred hccccccccCCcHHH
Confidence 356799999976443
No 39
>1gyo_A Cytochrome C3, A dimeric class III C-type cytochrome; electron transport, DI-tetraheme, AB initio, electron transfer; HET: HEC; 1.2A {Desulfovibrio gigas} SCOP: a.138.1.1
Probab=20.68 E-value=52 Score=23.97 Aligned_cols=49 Identities=27% Similarity=0.682 Sum_probs=34.4
Q ss_pred chhhhHHHHHHHHHhCCCCCCCCcccccccccchh--------hHHHHh----cChhhHhhcc---------cc-ccccC
Q 029861 45 VCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAV--------RQAYHN----LCPGCAKEQN---------VC-AKCCS 102 (186)
Q Consensus 45 VCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qktV--------k~AYH~----iC~~CA~~~~---------vC-aKC~k 102 (186)
-|.-|+.. +..-..+..|..|+...- ..|||. .|..|=.+.. -| +.|-.
T Consensus 35 ~C~~CHh~---------~~~~~~~~~C~~CH~~~~~~~~~~~~~~a~H~~~~~~C~~CH~~~~~~~~~~gp~~C~~~CH~ 105 (109)
T 1gyo_A 35 SCVSCHHM---------FDGCGDFQKCADCHIDRDDRSYERGFYKAWHSESEISCRGCHKAMKAKNEQTGPIGCLQGCHE 105 (109)
T ss_dssp CHHHHSTT---------CCSSBCCCCGGGTCCCCSCSCCTTSHHHHHSSSSTTSHHHHHHHHHHTTCCCCCCSTTSSTTC
T ss_pred ChhhcCCC---------CCCCCCCcchhhhcCCccccccchhhHHhhhcccCCchhhhchhhhhccccCCCCccCcccCC
Confidence 49999953 112255778999987543 589998 9999977644 47 77754
Done!