Query 029861
Match_columns 186
No_of_seqs 97 out of 99
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 07:16:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029861.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029861hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yioa1 a.4.6.2 (A:131-200) Re 74.4 0.67 4.9E-05 30.0 1.8 56 119-174 3-67 (70)
2 d2cy3a_ a.138.1.1 (A:) Cytochr 57.2 1.2 8.7E-05 31.1 0.3 48 41-94 38-99 (118)
3 d1v5na_ g.49.1.3 (A:) Pdi-like 48.8 1.2 9E-05 30.6 -0.8 38 68-109 47-84 (89)
4 d2apob1 g.41.16.1 (B:403-457) 38.5 8.6 0.00062 24.7 2.2 27 69-109 5-31 (55)
5 d1rp3a2 a.4.13.2 (A:164-234) S 37.6 9.1 0.00066 23.3 2.2 27 117-143 10-37 (71)
6 d1u5sb2 g.39.1.3 (B:103-137) P 35.1 5.1 0.00037 23.7 0.6 9 96-104 2-10 (35)
7 d1a04a1 a.4.6.2 (A:150-216) Ni 33.6 2 0.00015 27.2 -1.6 48 126-174 4-61 (67)
8 d1ibia2 g.39.1.3 (A:145-175) C 32.0 5.2 0.00038 23.1 0.3 11 96-106 2-12 (31)
9 d2ey4e1 g.41.16.1 (E:4-55) Rib 31.7 5.8 0.00042 25.3 0.5 27 69-109 3-29 (52)
10 d2jnea1 g.41.18.1 (A:1-71) Hyp 29.7 0.92 6.7E-05 31.0 -4.0 47 43-101 2-48 (71)
11 d3caoa_ a.138.1.1 (A:) Cytochr 29.1 11 0.0008 25.6 1.7 47 46-94 36-89 (103)
12 d2cora2 g.39.1.3 (A:8-42) Pinc 27.8 2.5 0.00018 25.3 -1.8 12 43-54 8-19 (35)
13 d1x6ha1 g.37.1.1 (A:44-80) Tra 27.7 7.5 0.00055 23.1 0.5 10 95-104 5-14 (37)
14 d1jm7b_ g.44.1.1 (B:) bard1 RI 26.4 64 0.0046 20.7 5.3 23 83-105 42-66 (97)
15 d1vqo11 g.41.8.2 (1:1-56) Ribo 25.6 6.6 0.00048 25.4 -0.1 14 92-105 29-42 (56)
16 d1fsea_ a.4.6.2 (A:) Germinati 24.9 7.8 0.00057 24.1 0.2 26 150-175 35-60 (67)
17 d2cu8a1 g.39.1.3 (A:8-37) Cyst 23.3 12 0.00084 21.5 0.7 11 95-105 3-13 (30)
18 d1zbdb_ g.50.1.1 (B:) Effector 22.8 9.1 0.00066 26.7 0.2 37 64-102 44-81 (124)
19 d1nj1a2 d.68.5.1 (A:411-481) C 21.8 6 0.00043 25.8 -0.9 20 64-83 47-66 (71)
20 d1or7a1 a.4.13.2 (A:120-187) S 20.2 26 0.0019 21.3 2.0 30 116-145 6-36 (68)
No 1
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=74.40 E-value=0.67 Score=29.97 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=39.5
Q ss_pred HHHHHHHHhhchhhccchhhhcccccccCCC---------CchhHHHHHHHHHHhHhHHHHHHHH
Q 029861 119 QKMLEAALKNARERDRRILLRAPTKIKLGNY---------FLPHHLRNMLQKAEVTKTITMVITW 174 (186)
Q Consensus 119 q~ele~~lk~l~ER~RRt~lR~~~k~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (186)
+.+++..+..|++|+++-+.-.++-....+| ++..|+++++.|+.+....-.|..+
T Consensus 3 ~~~~~~~~~~LT~rE~~vl~~l~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Klgv~~r~elv~~a 67 (70)
T d1yioa1 3 QDQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLV 67 (70)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4467777889999998876655543333333 7889999999999887665555443
No 2
>d2cy3a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans, different strains [TaxId: 876]}
Probab=57.24 E-value=1.2 Score=31.10 Aligned_cols=48 Identities=21% Similarity=0.517 Sum_probs=31.8
Q ss_pred CccCc-hhhhHHHHHHHHHhCCCCCCCCccccccccc-------------chhhHHHHhcChhhHhhc
Q 029861 41 EITGV-CPRCKDQIDWKRRYGKYKPLSEPAKCQRCTK-------------RAVRQAYHNLCPGCAKEQ 94 (186)
Q Consensus 41 ~~~gV-CqRC~eiIeWKvkY~KYKPLt~p~KC~kC~q-------------ktVk~AYH~iC~~CA~~~ 94 (186)
.+.+| |.-|+..++ ......+...|..|+. .....|||..|..|-.+.
T Consensus 38 ~H~~v~C~~CHh~~~------~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~~~a~h~~C~~CH~~~ 99 (118)
T d2cy3a_ 38 KHATVECVQCHHTLE------ADGGAVKKCTTSGCHDSLEFRDKANAKDIKLVENAFHTQCIDCHKAL 99 (118)
T ss_dssp GGTTSCHHHHSTTTT------TTTTCCCCTTSTTSSCCCCCCCSTTTTCTTSHHHHHHHHHHHHHHHH
T ss_pred hhCCCCccccccchh------hcccCCccccccCCCcccccccCCcchhhhhhhhhhhhHHHHHHHHH
Confidence 34455 999997652 2222334556888884 335679999999998764
No 3
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=48.82 E-value=1.2 Score=30.61 Aligned_cols=38 Identities=26% Similarity=0.642 Sum_probs=29.3
Q ss_pred cccccccccchhhHHHHhcChhhHhhccccccccCCcccccC
Q 029861 68 PAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIG 109 (186)
Q Consensus 68 p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k~~e~i~~ 109 (186)
+.+|..|....-.+.|+ |..| .+.+...|...++.+..
T Consensus 47 ~~~C~~C~~~~~g~~Y~--C~~C--~f~LH~~CA~~P~~~~~ 84 (89)
T d1v5na_ 47 VYTCDKCEEEGTIWSYH--CDEC--DFDLHAKCALNEDTKES 84 (89)
T ss_dssp SCCCTTTSCCCCSCEEE--CTTT--CCCCCHHHHHCSSCSSC
T ss_pred CCEeCCCCCCcCCcEeE--eccC--CCEecHHHcCCCcccCC
Confidence 56899999887777886 8998 58888888766665443
No 4
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=38.49 E-value=8.6 Score=24.67 Aligned_cols=27 Identities=22% Similarity=0.591 Sum_probs=18.9
Q ss_pred ccccccccchhhHHHHhcChhhHhhccccccccCCcccccC
Q 029861 69 AKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIG 109 (186)
Q Consensus 69 ~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k~~e~i~~ 109 (186)
.+|..|+..|. ..+|+.||.+.....|
T Consensus 5 rkC~~C~~YTL--------------~~~CP~CG~~t~~a~P 31 (55)
T d2apob1 5 KKCPKCGLYTL--------------KEICPKCGEKTVIPKP 31 (55)
T ss_dssp EECTTTCCEES--------------SSBCSSSCSBCBCCCC
T ss_pred eeCCcccceec--------------cccCcCCCCccCccCC
Confidence 56777777554 3688999987766555
No 5
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=37.63 E-value=9.1 Score=23.31 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhchhhccchh-hhcccc
Q 029861 117 AEQKMLEAALKNARERDRRIL-LRAPTK 143 (186)
Q Consensus 117 ~eq~ele~~lk~l~ER~RRt~-lR~~~k 143 (186)
+....+.++|..|++++|.-| |++.+.
T Consensus 10 e~~~~l~~~l~~L~~~~r~v~~l~~~~~ 37 (71)
T d1rp3a2 10 ELTEKVKEAVSKLPEREKLVIQLIFYEE 37 (71)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhHh
Confidence 344478899999999999998 455543
No 6
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.11 E-value=5.1 Score=23.73 Aligned_cols=9 Identities=56% Similarity=1.047 Sum_probs=7.6
Q ss_pred ccccccCCc
Q 029861 96 VCAKCCSRV 104 (186)
Q Consensus 96 vCaKC~k~~ 104 (186)
+||+|.+|-
T Consensus 2 vCA~CekPF 10 (35)
T d1u5sb2 2 VCAKCEKPF 10 (35)
T ss_dssp BCTTTCCBC
T ss_pred cccccCCcc
Confidence 799999874
No 7
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=33.64 E-value=2 Score=27.19 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=30.8
Q ss_pred HhhchhhccchhhhcccccccC-CC---------CchhHHHHHHHHHHhHhHHHHHHHH
Q 029861 126 LKNARERDRRILLRAPTKIKLG-NY---------FLPHHLRNMLQKAEVTKTITMVITW 174 (186)
Q Consensus 126 lk~l~ER~RRt~lR~~~k~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (186)
+..|++|+++- |+.+-.|..- +| ++..|++++++|+.+.-..-.+..+
T Consensus 4 l~~LT~rE~~v-l~ll~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Klgv~~r~elv~~a 61 (67)
T d1a04a1 4 VNQLTPRERDI-LKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWV 61 (67)
T ss_dssp GGGSCHHHHHH-HHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred cccCCHHHHHH-HHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 55677777654 4444443332 23 7888999999999887655555443
No 8
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=32.00 E-value=5.2 Score=23.07 Aligned_cols=11 Identities=36% Similarity=0.872 Sum_probs=9.0
Q ss_pred ccccccCCccc
Q 029861 96 VCAKCCSRVDR 106 (186)
Q Consensus 96 vCaKC~k~~e~ 106 (186)
.||+||++.|.
T Consensus 2 rca~cgk~les 12 (31)
T d1ibia2 2 RCAKCGKSLES 12 (31)
T ss_dssp ECSSSCCEECS
T ss_pred ccccccCcccc
Confidence 49999998774
No 9
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=31.71 E-value=5.8 Score=25.28 Aligned_cols=27 Identities=22% Similarity=0.660 Sum_probs=18.0
Q ss_pred ccccccccchhhHHHHhcChhhHhhccccccccCCcccccC
Q 029861 69 AKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCCSRVDRVIG 109 (186)
Q Consensus 69 ~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~k~~e~i~~ 109 (186)
.+|.+|+..|. ..+|+.||.......|
T Consensus 3 rkC~~C~~YTL--------------~~~CP~CG~~t~~a~P 29 (52)
T d2ey4e1 3 RKCPKCGRYTL--------------KEVCPVCGEKTKVAHP 29 (52)
T ss_dssp EECTTTCCEES--------------SSBCTTTCCBCEESSC
T ss_pred ccCCcccceec--------------cccCcCCCCcccccCC
Confidence 46777776543 3578889877665554
No 10
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=29.68 E-value=0.92 Score=30.96 Aligned_cols=47 Identities=30% Similarity=0.714 Sum_probs=33.6
Q ss_pred cCchhhhHHHHHHHHHhCCCCCCCCcccccccccchhhHHHHhcChhhHhhcccccccc
Q 029861 43 TGVCPRCKDQIDWKRRYGKYKPLSEPAKCQRCTKRAVRQAYHNLCPGCAKEQNVCAKCC 101 (186)
Q Consensus 43 ~gVCqRC~eiIeWKvkY~KYKPLt~p~KC~kC~qktVk~AYH~iC~~CA~~~~vCaKC~ 101 (186)
+..|+.|..-|+|+ ....-|..|.+.-...| .|++|..++.+=--||
T Consensus 2 ~~~CP~C~~eL~~~---------~~~~~C~~C~~~~~~~a---~CPdC~~~Le~LkACG 48 (71)
T d2jnea1 2 ELHCPQCQHVLDQD---------NGHARCRSCGEFIEMKA---LCPDCHQPLQVLKACG 48 (71)
T ss_dssp CCBCSSSCSBEEEE---------TTEEEETTTCCEEEEEE---ECTTTCSBCEEEEETT
T ss_pred CCcCCCccCccccc---------CCCEehhhhhhhheeEE---eCCccccHHHHHHhcc
Confidence 45699999999997 24567888876655544 5888888777655554
No 11
>d3caoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio africanus [TaxId: 873]}
Probab=29.10 E-value=11 Score=25.61 Aligned_cols=47 Identities=26% Similarity=0.511 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHhCCCCCCCCccccccccc-------chhhHHHHhcChhhHhhc
Q 029861 46 CPRCKDQIDWKRRYGKYKPLSEPAKCQRCTK-------RAVRQAYHNLCPGCAKEQ 94 (186)
Q Consensus 46 CqRC~eiIeWKvkY~KYKPLt~p~KC~kC~q-------ktVk~AYH~iC~~CA~~~ 94 (186)
|.-|+-.++ -...-|.-.+.+..|..|+. .....|||..|..|=.+.
T Consensus 36 C~~CHh~~~--~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~A~H~~C~~CH~~~ 89 (103)
T d3caoa_ 36 CNACHHVWV--NGVLAEDEDSVGTPCSDCHALEQDGDTPGLQDAYHQQCWGCHEKQ 89 (103)
T ss_dssp GGGTSCCEE--TTEECSSCCCTTSCGGGTCCSSCBTTBCCHHHHHHHHHHHHHHHH
T ss_pred hhhCCCCCc--CccccccccCCCCccccccccccccccchHHHHHHHHHHHHHHhc
Confidence 999997543 22233444445556999983 347789999999997664
No 12
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.76 E-value=2.5 Score=25.26 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=10.0
Q ss_pred cCchhhhHHHHH
Q 029861 43 TGVCPRCKDQID 54 (186)
Q Consensus 43 ~gVCqRC~eiIe 54 (186)
-.||+.|+.+|+
T Consensus 8 k~vC~KCh~iId 19 (35)
T d2cora2 8 KYICQKCHAIID 19 (35)
T ss_dssp CCBCTTTCCBCC
T ss_pred hHHHHHHHhhhh
Confidence 358999999994
No 13
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.73 E-value=7.5 Score=23.09 Aligned_cols=10 Identities=40% Similarity=0.853 Sum_probs=7.8
Q ss_pred cccccccCCc
Q 029861 95 NVCAKCCSRV 104 (186)
Q Consensus 95 ~vCaKC~k~~ 104 (186)
-||+||||.-
T Consensus 5 fvcskcgktf 14 (37)
T d1x6ha1 5 FVCSKCGKTF 14 (37)
T ss_dssp EECSSSCCEE
T ss_pred eeecccccch
Confidence 4899999853
No 14
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.42 E-value=64 Score=20.66 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=15.2
Q ss_pred HHhcChhhHhhc--cccccccCCcc
Q 029861 83 YHNLCPGCAKEQ--NVCAKCCSRVD 105 (186)
Q Consensus 83 YH~iC~~CA~~~--~vCaKC~k~~e 105 (186)
-|+.|..|.... .-|+-|+.+..
T Consensus 42 gH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (97)
T d1jm7b_ 42 EHIFCSNCVSDCIGTGCPVCYTPAW 66 (97)
T ss_dssp SCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCchhHHHHHHHHhccccccCCcCc
Confidence 477788885542 35999986543
No 15
>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=25.55 E-value=6.6 Score=25.44 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=10.4
Q ss_pred hhccccccccCCcc
Q 029861 92 KEQNVCAKCCSRVD 105 (186)
Q Consensus 92 ~~~~vCaKC~k~~e 105 (186)
.....||.||-++.
T Consensus 29 ~qK~~CasCGyg~s 42 (56)
T d1vqo11 29 TKKKVCSSCGFGKS 42 (56)
T ss_dssp TTTTEETTTCTTTC
T ss_pred hccccccccCCCcc
Confidence 35789999997443
No 16
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=24.92 E-value=7.8 Score=24.06 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=20.4
Q ss_pred CchhHHHHHHHHHHhHhHHHHHHHHH
Q 029861 150 FLPHHLRNMLQKAEVTKTITMVITWI 175 (186)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (186)
++..|++++.+|+.+....-.|..++
T Consensus 35 TV~~~~~~i~~Kl~v~~r~~lv~~a~ 60 (67)
T d1fsea_ 35 TVRNHISNAMQKLGVKGRSQAVVELL 60 (67)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 77889999999999877666665544
No 17
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.30 E-value=12 Score=21.47 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=9.0
Q ss_pred cccccccCCcc
Q 029861 95 NVCAKCCSRVD 105 (186)
Q Consensus 95 ~vCaKC~k~~e 105 (186)
..|++|+++++
T Consensus 3 ~~CprC~K~VY 13 (30)
T d2cu8a1 3 SKCPKCDKTVY 13 (30)
T ss_dssp CBCTTTCCBCC
T ss_pred CcCCCCCCcee
Confidence 46999999876
No 18
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.79 E-value=9.1 Score=26.72 Aligned_cols=37 Identities=24% Similarity=0.564 Sum_probs=24.6
Q ss_pred CCCCcccccccccchhh-HHHHhcChhhHhhccccccccC
Q 029861 64 PLSEPAKCQRCTKRAVR-QAYHNLCPGCAKEQNVCAKCCS 102 (186)
Q Consensus 64 PLt~p~KC~kC~qktVk-~AYH~iC~~CA~~~~vCaKC~k 102 (186)
+...+..|..|+..-.. ....+.|..|. ..+|++|+.
T Consensus 44 ~~~~~~~C~~C~~~f~~~~~~~~~C~~C~--~~~C~~C~~ 81 (124)
T d1zbdb_ 44 AGDGVNRCILCGEQLGMLGSASVVCEDCK--KNVCTKCGV 81 (124)
T ss_dssp CSCSSSBCSSSCCBCSTTSCCEEECTTTC--CEEETTSEE
T ss_pred hccCCCcCcccCCcccCCCCCCCcCccCC--cccccCCCC
Confidence 44557788889876322 23334799986 568999974
No 19
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=21.79 E-value=6 Score=25.81 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=14.4
Q ss_pred CCCCcccccccccchhhHHH
Q 029861 64 PLSEPAKCQRCTKRAVRQAY 83 (186)
Q Consensus 64 PLt~p~KC~kC~qktVk~AY 83 (186)
|+..+++|+.|++.+...+|
T Consensus 47 p~~~~~~Ci~cgk~a~~~v~ 66 (71)
T d1nj1a2 47 QEEGSGTCINCGREAPYRAY 66 (71)
T ss_dssp EECSCCBCTTTCSBCCEEEE
T ss_pred cCCCCCcceecCCccceEEE
Confidence 56678888888887765543
No 20
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=20.22 E-value=26 Score=21.27 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhchhhccchhh-hcccccc
Q 029861 116 EAEQKMLEAALKNARERDRRILL-RAPTKIK 145 (186)
Q Consensus 116 e~eq~ele~~lk~l~ER~RRt~l-R~~~k~~ 145 (186)
++....+.++|..|+++.|..|. |+++...
T Consensus 6 ~e~~~~l~~~l~~Lp~~~r~v~~l~~~~~~s 36 (68)
T d1or7a1 6 EELRQIVFRTIESLPEDLRMAITLRELDGLS 36 (68)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 34556789999999999999875 4554433
Done!