BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029862
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 243 bits (619), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 127/191 (66%), Positives = 146/191 (76%), Gaps = 12/191 (6%)
Query: 1 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQ---AV 57
MS+D +SERVCYVHC++C TILAVSVP +SLF +VTVRCGHC NLL++N+ +L A
Sbjct: 1 MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAP 60
Query: 58 PL-QDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPS 116
P+ QD Q +QH KDC SSS+ S E + E PRMPPIRPPEKRQRVPS
Sbjct: 61 PIHQDLQPHRQHTT-SLVTRKDCASSSRSTNNLS--ENIDREAPRMPPIRPPEKRQRVPS 117
Query: 117 AYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAK-LDKAAAY 175
AYNRFIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGLKLDGNK+ K LD++ A
Sbjct: 118 AYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQSVA- 176
Query: 176 AEGTQKSNGFY 186
QKSNG+Y
Sbjct: 177 ---GQKSNGYY 184
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 203 bits (517), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 105/166 (63%), Positives = 126/166 (75%), Gaps = 9/166 (5%)
Query: 5 LASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQL 64
+A+E++CY+ CN+CN ILAV+VPCSSLF+IVTVRCGHC NL +VNM +ALQ+ L P
Sbjct: 6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQS--LSRPNF 63
Query: 65 QKQHINLEDSITKDCGSSSKCN-KFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIK 123
Q + + + GSSS+ + K S T R+ RPPEKRQRVPSAYN+FIK
Sbjct: 64 QATNYAVPEY-----GSSSRSHTKIPSRISTRTITEQRIVN-RPPEKRQRVPSAYNQFIK 117
Query: 124 EEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKL 169
EEIQRIKA+NPDISHREAFSTAAKNWAHFPHIHFGL L+ NKQAK+
Sbjct: 118 EEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 198 bits (503), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/184 (56%), Positives = 132/184 (71%), Gaps = 8/184 (4%)
Query: 6 ASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQD---P 62
A E VCYVHCN+CNTI AVSVP +S+ NIVTVRCGHC +LL+VN+ +QA+P +D
Sbjct: 8 APEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQD 67
Query: 63 QLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFI 122
L+ +++ ++ + + GSSS+ + F ++++T M +RPPEKRQRVPSAYNRFI
Sbjct: 68 NLKMHNMSFRENYS-EYGSSSRYGRVPMMF--SKNDTEHMLHVRPPEKRQRVPSAYNRFI 124
Query: 123 KEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAEGTQKS 182
KEEI+RIKA+NPDISHREAFSTAAKNWAHFP+IHFGL KLD+A A QK
Sbjct: 125 KEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLG-SHESSKKLDEAIG-APSPQKV 182
Query: 183 NGFY 186
Y
Sbjct: 183 QRLY 186
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/161 (55%), Positives = 114/161 (70%), Gaps = 2/161 (1%)
Query: 1 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQ 60
MS+ SE VCYV+CNYCNTIL V+VP + +NIVTVRCGHC +L++++ QA +Q
Sbjct: 1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQ 60
Query: 61 DPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNR 120
D Q+Q + + + D S ++ + S+A ++ PIRPPEKRQRVPSAYNR
Sbjct: 61 DHQVQNRGFQGNNFGSYDIASRNQ--RTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNR 118
Query: 121 FIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKL 161
FIKEEIQRIK SNP+ISHREAFS AAKNWAH P +HFGL +
Sbjct: 119 FIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSV 159
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 128/210 (60%), Gaps = 28/210 (13%)
Query: 1 MSLDLA-SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP- 58
MS +A +E+VCYVHCN+CNTILAVSVP +S+ NIVTVRCGHC NLL+VN+ + + P
Sbjct: 1 MSAQIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPA 60
Query: 59 LQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPI------------- 105
LQD H +L++S C + R+PP
Sbjct: 61 LQD----HHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQ 116
Query: 106 -------RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFG 158
RPPEKRQRVPSAYNRFIKEEI+RIKA+NPDISHREAFSTAAKNWAH+P+IHFG
Sbjct: 117 LEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFG 176
Query: 159 LKL--DGNKQAKLDKAAAYAEGTQKSNGFY 186
L +G K+ A ++K GFY
Sbjct: 177 LSPGHEGGKKLVDVDPIPTAPSSKKIQGFY 206
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 124/199 (62%), Gaps = 22/199 (11%)
Query: 7 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQK 66
S+ +CYV CN+C TILAV+VP +SLF VTVRCG C NLL+VNM S + +P + QLQ
Sbjct: 22 SDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYV--LPASN-QLQL 78
Query: 67 Q-----HINLEDSI--TKDCGSSS---------KCNKFSSAFET-AEHETPRMPPI-RPP 108
Q + N +D + +D S+ N S + +HE P+ PP+ RPP
Sbjct: 79 QLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPP 138
Query: 109 EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAK 168
EKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL D K
Sbjct: 139 EKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDNQPVKK 198
Query: 169 LDKAAAYAEGTQ-KSNGFY 186
+ E GFY
Sbjct: 199 TNMPQQEGEDNMVMKEGFY 217
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 120/218 (55%), Gaps = 39/218 (17%)
Query: 8 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM----------------- 50
E++CYVHCN+C+TILAV VPCSSLF VTVRCGHCANLL+VN+
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88
Query: 51 ----------------VSALQAVPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFET 94
V + QA + +++ S C +++ +SA
Sbjct: 89 GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148
Query: 95 AEHETPRMPPIRPP-----EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNW 149
A P+ P P EKRQRVPSAYNRFIK+EIQRIKASNPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208
Query: 150 AHFPHIHFGLKLD-GNKQAKLDKAAAYAEGTQKSNGFY 186
AHFPHIHFGL D G K+ + E +G Y
Sbjct: 209 AHFPHIHFGLMPDQGLKKTGIQSQDGAGECMLFKDGLY 246
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 120/218 (55%), Gaps = 39/218 (17%)
Query: 8 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM----------------- 50
E++CYVHCN+C+TILAV VPCSSLF VTVRCGHCANLL+VN+
Sbjct: 29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPF 88
Query: 51 ----------------VSALQAVPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFET 94
V + QA + +++ S C +++ +SA
Sbjct: 89 GQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANK 148
Query: 95 AEHETPRMPPIRPP-----EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNW 149
A P+ P P EKRQRVPSAYNRFIK+EIQRIKASNPDI+HREAFS AAKNW
Sbjct: 149 ATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNW 208
Query: 150 AHFPHIHFGLKLD-GNKQAKLDKAAAYAEGTQKSNGFY 186
AHFPHIHFGL D G K+ + E +G Y
Sbjct: 209 AHFPHIHFGLMPDQGLKKTGIQSQDGAGECMLFKDGLY 246
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 174 bits (440), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/194 (51%), Positives = 112/194 (57%), Gaps = 38/194 (19%)
Query: 7 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSA------------- 53
+E++CYVHCN C+TILAV VPCSSLF VTVRCGHCANLL+VN+
Sbjct: 22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQL 81
Query: 54 ---------------LQAVPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETA--- 95
L V Q P L + + SSS C + A +
Sbjct: 82 HFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAK 141
Query: 96 ----EHETPRMPPI---RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKN 148
E E P+ P RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKN
Sbjct: 142 PVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 201
Query: 149 WAHFPHIHFGLKLD 162
WAHFPHIHFGL D
Sbjct: 202 WAHFPHIHFGLMPD 215
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 174 bits (440), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/194 (51%), Positives = 112/194 (57%), Gaps = 38/194 (19%)
Query: 7 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSA------------- 53
+E++CYVHCN C+TILAV VPCSSLF VTVRCGHCANLL+VN+
Sbjct: 22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQL 81
Query: 54 ---------------LQAVPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETA--- 95
L V Q P L + + SSS C + A +
Sbjct: 82 HFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAK 141
Query: 96 ----EHETPRMPPI---RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKN 148
E E P+ P RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKN
Sbjct: 142 PVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 201
Query: 149 WAHFPHIHFGLKLD 162
WAHFPHIHFGL D
Sbjct: 202 WAHFPHIHFGLMPD 215
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 160 bits (405), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 119/211 (56%), Gaps = 32/211 (15%)
Query: 6 ASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM---------VSALQA 56
+++++CYVHC++C+T+LAVSVP SSLF VTVRCGHC+NLL+V + VS L
Sbjct: 21 STDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGH 80
Query: 57 VPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRM-------------- 102
L P LE+ + G + N S +A H +
Sbjct: 81 SFLPPPPPPPPPNLLEE--MRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQ 138
Query: 103 ------PPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIH 156
P RPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIH
Sbjct: 139 EMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 198
Query: 157 FGLKLDGNKQAKLDKAAAYAE-GTQKSNGFY 186
FGL D K + E G GFY
Sbjct: 199 FGLMADHPPTKKANVRQQEGEDGMMGREGFY 229
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 90/160 (56%), Gaps = 26/160 (16%)
Query: 1 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVN----MVSALQA 56
M L SE +CYV C YCNT+LAV VPC L + VTV+CGHC NL ++ MV L
Sbjct: 1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSP 60
Query: 57 V-----PLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMP-PIRPPEK 110
P Q P C + T+ +PR P ++PPEK
Sbjct: 61 TDHPLGPFQGP----------------CTDCRRNQPLPLVSPTSNEGSPRAPFVVKPPEK 104
Query: 111 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWA 150
+ R+PSAYNRF++EEIQRIKA+ PDI HREAFS AAKNWA
Sbjct: 105 KHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 108/176 (61%), Gaps = 20/176 (11%)
Query: 9 RVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSA------LQAVPLQDP 62
++C+V C +C TIL VSVP +SL +VTVRCGHC +LL+VN++ A L A
Sbjct: 20 QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLD 79
Query: 63 QLQKQHINLEDSITKDCG--SSSKCNKFSSAFETAEHETPRMPPI-----RPPEKRQRVP 115
+ K+ + D + ++ + K N ++ ++++E + + +PPEKRQR P
Sbjct: 80 ETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAP 139
Query: 116 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDK 171
SAYN FIKEEI+R+KA NP ++H+EAFS AAKNWAHFP H NK+A D+
Sbjct: 140 SAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH-------NKRAASDQ 188
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 91/150 (60%), Gaps = 15/150 (10%)
Query: 7 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQK 66
+E + YV C+ CNTILAV +P + + VTV+CGHC NL + LQ
Sbjct: 18 AEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQG---------- 67
Query: 67 QHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPP----IRPPEKRQRVPSAYNRFI 122
H++L + GS K SS+ + + P P ++PPEK+QR+PSAYNRF+
Sbjct: 68 -HVSLTLQMQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPSAYNRFM 126
Query: 123 KEEIQRIKASNPDISHREAFSTAAKNWAHF 152
++EIQRIK++NP+I HREAFS AAKNWA +
Sbjct: 127 RDEIQRIKSANPEIPHREAFSAAAKNWAKY 156
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 61/80 (76%), Gaps = 3/80 (3%)
Query: 106 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNK 165
RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL D
Sbjct: 214 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD--- 270
Query: 166 QAKLDKAAAYAEGTQKSNGF 185
L K + + Q+ +G
Sbjct: 271 HQGLKKTSLLPQDHQRKDGL 290
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 4 DLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSAL 54
D E++CYVHC+YC+T+L VSVP SSLF VTVRCGHC++LL VNM L
Sbjct: 54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLL 104
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 88/151 (58%), Gaps = 5/151 (3%)
Query: 8 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLN-VNMVSALQAVPLQDPQLQK 66
ER+ V C++C T+L VSVPCSS+ +V V+CGHC+ +L+ VN+ + + ++ L
Sbjct: 14 ERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILSAVNLPPSPVSASIE---LTP 70
Query: 67 QHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKR-QRVPSAYNRFIKEE 125
Q ++ + SS ++ E P R QR PSAYN F+KEE
Sbjct: 71 QELDAGPPPGEYSDESSGDDREGRDAEDDAPAPAAAAVANKPPGRKQRTPSAYNCFVKEE 130
Query: 126 IQRIKASNPDISHREAFSTAAKNWAHFPHIH 156
I+RIK+ P+I+H++AFSTAAKNWAH P I
Sbjct: 131 IKRIKSMEPNITHKQAFSTAAKNWAHLPRIQ 161
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 116 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153
++Y RF KE++ KA NPD + E AK W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELP 92
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 116 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153
S+Y RF KE++ KA NPD E A+ W P
Sbjct: 55 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 92
>sp|Q4H0T5|TFAM_TRACR Transcription factor A, mitochondrial OS=Trachypithecus cristatus
GN=TFAM PE=2 SV=1
Length = 246
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 116 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153
S+Y RF KE++ KA NPD E AK W P
Sbjct: 55 SSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELP 92
>sp|Q18079|YXT1_CAEEL Uncharacterized protein C18B2.1 OS=Caenorhabditis elegans
GN=C18B2.1 PE=4 SV=1
Length = 321
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 98 ETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKAS 132
ET MP + KRQ+VPS RFIK E+ K+S
Sbjct: 270 ETTMMPQLEEMLKRQKVPSDSIRFIKNELLYKKSS 304
>sp|Q5D144|TFAM_PIG Transcription factor A, mitochondrial OS=Sus scrofa GN=TFAM PE=2
SV=1
Length = 246
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 116 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153
++Y RF KE++ KA NPD + E A+ W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELP 92
>sp|Q92196|ATPD_AGABI ATP synthase subunit delta, mitochondrial OS=Agaricus bisporus
GN=atpD PE=2 SV=1
Length = 162
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 41 HCANLLNVNMVSALQAVPLQDPQLQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHE 98
H N L +N+V +A PL+D ++ NL+++ GS S+ +K + E +E
Sbjct: 100 HPNNRLTINVV---EAAPLEDFSIEAIRANLQEANKVAAGSGSEADKMEAQIEAEVYE 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.130 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,967,161
Number of Sequences: 539616
Number of extensions: 2550353
Number of successful extensions: 8441
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 8385
Number of HSP's gapped (non-prelim): 66
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)