Query 029862
Match_columns 186
No_of_seqs 119 out of 186
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 07:17:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hme_A High mobility group pro 97.9 1.7E-05 5.9E-10 54.5 5.7 47 107-153 3-49 (77)
2 1wz6_A HMG-box transcription f 97.8 2.4E-05 8.2E-10 54.6 5.4 48 106-153 3-50 (82)
3 3nm9_A HMG-D, high mobility gr 97.8 4.4E-05 1.5E-09 52.4 5.5 43 111-153 4-46 (73)
4 2crj_A SWI/SNF-related matrix- 97.7 5.9E-05 2E-09 54.0 6.3 48 106-153 3-50 (92)
5 1hry_A Human SRY; DNA, DNA-bin 97.7 3.2E-05 1.1E-09 53.0 4.5 46 108-153 2-47 (76)
6 2cs1_A PMS1 protein homolog 1; 97.7 5.4E-05 1.9E-09 54.2 5.8 47 107-153 4-50 (92)
7 2e6o_A HMG box-containing prot 97.7 4E-05 1.4E-09 54.4 5.0 48 106-153 13-60 (87)
8 1wgf_A Upstream binding factor 97.7 4.6E-05 1.6E-09 54.5 5.2 48 106-153 16-63 (90)
9 1wxl_A Single-strand recogniti 97.7 6.6E-05 2.3E-09 51.4 5.5 45 108-152 1-45 (73)
10 1j46_A SRY, sex-determining re 97.7 6.7E-05 2.3E-09 52.9 5.6 46 108-153 2-47 (85)
11 2co9_A Thymus high mobility gr 97.7 6.5E-05 2.2E-09 55.0 5.7 48 106-153 13-60 (102)
12 1k99_A Upstream binding factor 97.6 7.5E-05 2.6E-09 54.6 5.3 48 106-153 6-53 (99)
13 4euw_A Transcription factor SO 97.6 9.8E-05 3.4E-09 54.6 5.8 49 105-153 24-72 (106)
14 2eqz_A High mobility group pro 97.6 0.0001 3.4E-09 52.1 5.4 48 106-153 11-60 (86)
15 1i11_A Transcription factor SO 97.6 0.00013 4.5E-09 50.7 5.8 44 110-153 4-47 (81)
16 3f27_D Transcription factor SO 97.6 9.3E-05 3.2E-09 51.4 5.0 45 109-153 5-49 (83)
17 4a3n_A Transcription factor SO 97.5 0.00011 3.9E-09 49.2 4.8 43 111-153 3-45 (71)
18 1ckt_A High mobility group 1 p 97.5 0.00016 5.3E-09 48.8 5.2 42 111-152 2-45 (71)
19 1gt0_D Transcription factor SO 97.5 0.00017 5.9E-09 49.9 5.4 43 111-153 3-45 (80)
20 2gzk_A Sex-determining region 97.4 0.00024 8.2E-09 54.7 5.8 48 106-153 84-131 (159)
21 3u2b_C Transcription factor SO 97.4 0.00019 6.7E-09 49.3 4.7 42 112-153 4-45 (79)
22 1aab_A High mobility group pro 97.4 0.00014 4.8E-09 50.8 3.7 46 107-152 4-51 (83)
23 2yrq_A High mobility group pro 97.4 0.00028 9.4E-09 55.3 5.7 48 106-153 97-144 (173)
24 2lhj_A High mobility group pro 97.3 9.5E-05 3.3E-09 53.4 2.7 50 105-154 17-68 (97)
25 1cg7_A Protein (NON histone pr 97.3 6.1E-05 2.1E-09 54.2 1.1 48 106-153 16-63 (93)
26 2lef_A LEF-1 HMG, protein (lym 97.3 0.00044 1.5E-08 48.6 5.4 42 112-153 4-45 (86)
27 2d7l_A WD repeat and HMG-box D 97.2 0.00065 2.2E-08 48.5 6.0 44 110-153 5-49 (81)
28 2yrq_A High mobility group pro 97.1 0.00065 2.2E-08 53.2 5.8 48 106-153 11-60 (173)
29 3tq6_A Transcription factor A, 96.9 0.00086 2.9E-08 55.0 4.3 47 108-154 7-53 (214)
30 3tmm_A Transcription factor A, 96.8 0.00097 3.3E-08 55.5 4.2 48 106-153 37-84 (238)
31 2gzk_A Sex-determining region 96.6 0.0026 9E-08 48.8 5.4 46 108-153 2-47 (159)
32 1l8y_A Upstream binding factor 96.3 0.0056 1.9E-07 45.4 5.2 41 111-152 5-45 (91)
33 3fgh_A Transcription factor A, 96.3 0.0035 1.2E-07 42.0 3.5 38 112-153 4-41 (67)
34 1v63_A Nucleolar transcription 95.2 0.026 8.8E-07 41.3 4.9 40 113-154 11-50 (101)
35 1v64_A Nucleolar transcription 95.2 0.022 7.6E-07 42.2 4.5 44 107-154 13-57 (108)
36 3tmm_A Transcription factor A, 94.3 0.011 3.8E-07 49.1 1.0 42 108-153 144-185 (238)
37 3tq6_A Transcription factor A, 94.2 0.012 4.2E-07 48.1 1.0 42 108-153 112-153 (214)
38 2yuk_A Myeloid/lymphoid or mix 93.4 0.0092 3.1E-07 44.0 -1.0 44 108-153 20-63 (90)
39 2cto_A Novel protein; high mob 90.4 0.14 4.7E-06 37.6 2.3 39 112-152 12-53 (93)
40 1x0t_A Ribonuclease P protein 61.3 2.7 9.1E-05 31.9 1.1 33 14-46 67-104 (120)
41 1wii_A Hypothetical UPF0222 pr 60.2 4.3 0.00015 29.6 2.0 43 12-54 23-65 (85)
42 2fiy_A Protein FDHE homolog; F 59.6 3.1 0.00011 36.2 1.3 29 8-46 204-232 (309)
43 2k3r_A Ribonuclease P protein 58.6 2.8 9.5E-05 32.0 0.8 33 14-46 62-99 (123)
44 2d74_B Translation initiation 30.9 14 0.00048 29.3 0.8 36 11-52 103-141 (148)
45 2e2z_A TIM15; protein import, 28.1 22 0.00074 26.9 1.3 38 14-51 15-55 (100)
46 3uky_C Nuclear CAP-binding pro 26.8 17 0.00059 22.5 0.5 7 109-115 26-32 (32)
47 3he5_B Synzip2; heterodimeric 26.8 26 0.00089 23.4 1.4 21 116-136 2-22 (52)
48 2g2k_A EIF-5, eukaryotic trans 26.0 34 0.0011 27.8 2.2 38 11-52 95-135 (170)
49 3j20_W 30S ribosomal protein S 24.8 32 0.0011 24.0 1.6 12 13-24 35-46 (63)
50 3sja_C Golgi to ER traffic pro 23.4 39 0.0013 23.7 1.9 31 120-150 9-39 (65)
51 2e9h_A EIF-5, eukaryotic trans 20.9 32 0.0011 27.5 1.1 38 11-52 102-142 (157)
52 1t6f_A Geminin; coiled-coil, c 20.9 29 0.001 22.1 0.7 13 123-135 20-32 (37)
53 1qxf_A GR2, 30S ribosomal prot 20.6 43 0.0015 23.6 1.6 16 13-28 27-42 (66)
54 1bb1_B Designed, thermostable 20.5 48 0.0017 20.7 1.6 12 121-132 13-24 (36)
55 2ph0_A Uncharacterized protein 20.2 32 0.0011 27.4 1.0 22 122-143 1-22 (174)
No 1
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=97.92 E-value=1.7e-05 Score=54.50 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=42.7
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 107 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 107 PPEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
-|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 3 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (77)
T 1hme_A 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 49 (77)
T ss_dssp CSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 46666788999999999999999999999999999999999999654
No 2
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=97.85 E-value=2.4e-05 Score=54.64 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=43.5
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 106 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 106 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
.+|.+-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLD 50 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 356677788999999999999999999999999999999999999654
No 3
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=97.77 E-value=4.4e-05 Score=52.36 Aligned_cols=43 Identities=26% Similarity=0.405 Sum_probs=40.1
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 111 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 111 RQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 4 PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 46 (73)
T 3nm9_A 4 PKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMK 46 (73)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 3578999999999999999999999999999999999999865
No 4
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=97.75 E-value=5.9e-05 Score=54.03 Aligned_cols=48 Identities=19% Similarity=0.433 Sum_probs=43.3
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 106 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 106 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
+-|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQ 50 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 446666788999999999999999999999999999999999999754
No 5
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=97.74 E-value=3.2e-05 Score=53.01 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=41.3
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 108 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 108 PEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
|.+-.|-+|||..|+++.-+.|++++|+++..|.-+.++..|+..+
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCC
Confidence 4556788999999999999999999999999999999999999753
No 6
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=5.4e-05 Score=54.22 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=42.0
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 107 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 107 PPEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
.|.+-.|-+|||..|+++.-.+|+++||+++..|.-+.++..|+..+
T Consensus 4 ~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (92)
T 2cs1_A 4 GSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLS 50 (92)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 34555678999999999999999999999999999999999999754
No 7
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=97.73 E-value=4e-05 Score=54.39 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=43.9
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 106 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 106 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
+-|.+-.|-++||..|+++.-++|++++|++++.|.-+.++..|+..+
T Consensus 13 kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 60 (87)
T 2e6o_A 13 TSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMK 60 (87)
T ss_dssp CCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 556777889999999999999999999999999999999999999654
No 8
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.71 E-value=4.6e-05 Score=54.52 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=43.6
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 106 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 106 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
+.|.+-.|-+|||..|+++.-..|+++||++++.|.-+.++..|+..+
T Consensus 16 kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 63 (90)
T 1wgf_A 16 GGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLS 63 (90)
T ss_dssp SCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 456667788999999999999999999999999999999999999743
No 9
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=97.69 E-value=6.6e-05 Score=51.43 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=41.1
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 029862 108 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHF 152 (186)
Q Consensus 108 PEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~ 152 (186)
|.+-.|-+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 445567899999999999999999999999999999999999975
No 10
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=97.68 E-value=6.7e-05 Score=52.92 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=41.6
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 108 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 108 PEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
|.+-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 47 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSC
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Confidence 4455678999999999999999999999999999999999999754
No 11
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.68 E-value=6.5e-05 Score=54.95 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=43.8
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 106 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 106 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
+.|.+-.|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 13 kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls 60 (102)
T 2co9_A 13 KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLG 60 (102)
T ss_dssp CCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCC
Confidence 556667788999999999999999999999999999999999999754
No 12
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=97.62 E-value=7.5e-05 Score=54.59 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=43.4
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 106 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 106 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
+.|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 6 kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls 53 (99)
T 1k99_A 6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELP 53 (99)
T ss_dssp SSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 456666788999999999999999999999999999999999999643
No 13
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=97.60 E-value=9.8e-05 Score=54.56 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=42.3
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 105 IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 105 ~KPPEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
.|.|.+-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 72 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLN 72 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 3667777889999999999999999999999999999999999998754
No 14
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=0.0001 Score=52.11 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=41.6
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 029862 106 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISH--REAFSTAAKNWAHFP 153 (186)
Q Consensus 106 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~h--kEaF~~aAknW~~~P 153 (186)
+-|.+-.|-+|||..|+++.-..|++++|+++. .|.-+.++..|+..+
T Consensus 11 kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (86)
T 2eqz_A 11 GDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 60 (86)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 345555778999999999999999999999974 999999999999644
No 15
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.58 E-value=0.00013 Score=50.72 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=40.1
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 110 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 110 KRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
+-.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 4 ~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (81)
T 1i11_A 4 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMT 47 (81)
T ss_dssp CSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCC
Confidence 34577999999999999999999999999999999999999654
No 16
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=97.57 E-value=9.3e-05 Score=51.44 Aligned_cols=45 Identities=24% Similarity=0.461 Sum_probs=39.8
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 109 EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 109 EKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
.|-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 5 ~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (83)
T 3f27_D 5 SRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 49 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 444688999999999999999999999999999999999998644
No 17
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=97.53 E-value=0.00011 Score=49.24 Aligned_cols=43 Identities=26% Similarity=0.460 Sum_probs=38.5
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 111 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 111 RQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 3 ~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (71)
T 4a3n_A 3 IRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 45 (71)
T ss_dssp --CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 3578899999999999999999999999999999999998643
No 18
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=97.51 E-value=0.00016 Score=48.83 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=38.3
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccC
Q 029862 111 RQRVPSAYNRFIKEEIQRIKASNPDISH--REAFSTAAKNWAHF 152 (186)
Q Consensus 111 RQR~psayN~fmK~ei~riK~~~P~i~h--kEaF~~aAknW~~~ 152 (186)
-.|-+|||..|+++.-+.|+++||+++. .|.-+.++..|+..
T Consensus 2 PKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~l 45 (71)
T 1ckt_A 2 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTM 45 (71)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhC
Confidence 3578999999999999999999999976 99999999999864
No 19
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=97.48 E-value=0.00017 Score=49.89 Aligned_cols=43 Identities=14% Similarity=0.332 Sum_probs=39.6
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 111 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 111 RQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 3 pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (80)
T 1gt0_D 3 VKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLS 45 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 3577999999999999999999999999999999999999644
No 20
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.41 E-value=0.00024 Score=54.69 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=42.9
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 106 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 106 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
+-|.+-.|-+|||..|+++.-.+|++++|+++..|.-+.++..|+..+
T Consensus 84 kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 131 (159)
T 2gzk_A 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 131 (159)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSC
T ss_pred cccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 445566788999999999999999999999999999999999999654
No 21
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=97.40 E-value=0.00019 Score=49.26 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=39.0
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 112 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 112 QR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (79)
T 3u2b_C 4 KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLK 45 (79)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence 578999999999999999999999999999999999998644
No 22
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=97.37 E-value=0.00014 Score=50.77 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=40.7
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccC
Q 029862 107 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISH--REAFSTAAKNWAHF 152 (186)
Q Consensus 107 PPEKRQR~psayN~fmK~ei~riK~~~P~i~h--kEaF~~aAknW~~~ 152 (186)
-|.+-.|-+|||..|+++.-..|++++|+++. .|.-+.++..|+..
T Consensus 4 dp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~l 51 (83)
T 1aab_A 4 DPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTM 51 (83)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhC
Confidence 45556788999999999999999999999975 99999999999864
No 23
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.00028 Score=55.30 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=43.0
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 106 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 106 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
+-|.+-.|-+|||..|+++...+|++++|+++..|.-+.++..|+..+
T Consensus 97 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 144 (173)
T 2yrq_A 97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 144 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred cCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 345666788999999999999999999999999999999999999754
No 24
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=97.34 E-value=9.5e-05 Score=53.40 Aligned_cols=50 Identities=26% Similarity=0.381 Sum_probs=44.9
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCC--HHHHHHHHHHhhccCCc
Q 029862 105 IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDIS--HREAFSTAAKNWAHFPH 154 (186)
Q Consensus 105 ~KPPEKRQR~psayN~fmK~ei~riK~~~P~i~--hkEaF~~aAknW~~~P~ 154 (186)
.+.|.+-.|-+|||..|+++.-.+|+++||+++ ..|.-+.++..|+..+.
T Consensus 17 ~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 68 (97)
T 2lhj_A 17 KKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSD 68 (97)
T ss_dssp TSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCH
Confidence 356777788999999999999999999999999 99999999999997543
No 25
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=97.29 E-value=6.1e-05 Score=54.16 Aligned_cols=48 Identities=25% Similarity=0.477 Sum_probs=43.4
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 106 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 106 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
+.|.+-.|-+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 16 kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 63 (93)
T 1cg7_A 16 KDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALT 63 (93)
T ss_dssp CCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 456667788999999999999999999999999999999999999653
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.26 E-value=0.00044 Score=48.63 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=39.1
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 112 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 112 QR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 45 (86)
T 2lef_A 4 KKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALS 45 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 477999999999999999999999999999999999999654
No 27
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.00065 Score=48.50 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=39.4
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhCCCCC-HHHHHHHHHHhhccCC
Q 029862 110 KRQRVPSAYNRFIKEEIQRIKASNPDIS-HREAFSTAAKNWAHFP 153 (186)
Q Consensus 110 KRQR~psayN~fmK~ei~riK~~~P~i~-hkEaF~~aAknW~~~P 153 (186)
+-.|-+|||..|+++.-..||++||+++ ..|.-+.++..|+..+
T Consensus 5 ~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls 49 (81)
T 2d7l_A 5 SSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLS 49 (81)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCC
Confidence 3356799999999999999999999998 9999999999999643
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.00065 Score=53.17 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=42.8
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCC--CCHHHHHHHHHHhhccCC
Q 029862 106 RPPEKRQRVPSAYNRFIKEEIQRIKASNPD--ISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 106 KPPEKRQR~psayN~fmK~ei~riK~~~P~--i~hkEaF~~aAknW~~~P 153 (186)
+-|.+-.|-+|||..|+++....|+++||+ ++-.|..+.++..|+..+
T Consensus 11 ~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (173)
T 2yrq_A 11 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 60 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCC
Confidence 456666788999999999999999999999 689999999999998754
No 29
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=96.86 E-value=0.00086 Score=55.00 Aligned_cols=47 Identities=32% Similarity=0.541 Sum_probs=41.9
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 029862 108 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 154 (186)
Q Consensus 108 PEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P~ 154 (186)
|.+-.|-+|||..|+++....|+++||+++..|..+.++..|+..+.
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~ 53 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPD 53 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCH
Confidence 44456789999999999999999999999999999999999997553
No 30
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=96.80 E-value=0.00097 Score=55.48 Aligned_cols=48 Identities=31% Similarity=0.497 Sum_probs=43.3
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 106 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 106 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
+-|.+-.|-+|||..|+++....|+++||+++..|..+.++..|+..+
T Consensus 37 ~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 84 (238)
T 3tmm_A 37 VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 84 (238)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 346666789999999999999999999999999999999999999754
No 31
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=96.65 E-value=0.0026 Score=48.81 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=42.1
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 108 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 108 PEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
|++..|-++||-.|++++-.+|+..+|+++..|.-+.++..|+..+
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls 47 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhh
Confidence 5666788999999999999999999999999999999999998654
No 32
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=96.32 E-value=0.0056 Score=45.41 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=37.3
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 029862 111 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHF 152 (186)
Q Consensus 111 RQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~ 152 (186)
..|-+|||+.|+.+...++++++|+ +..|.-+.+...|+..
T Consensus 5 PKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~l 45 (91)
T 1l8y_A 5 PESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNM 45 (91)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 3467999999999999999999999 9999999999999974
No 33
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=96.25 E-value=0.0035 Score=41.97 Aligned_cols=38 Identities=34% Similarity=0.675 Sum_probs=34.0
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 112 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 112 QR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
.|-+|||..|+++.-..+|..+| .|..+.++..|+..+
T Consensus 4 KrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls 41 (67)
T 3fgh_A 4 KRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLS 41 (67)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCC
Confidence 57789999999999999999887 599999999999754
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.24 E-value=0.026 Score=41.29 Aligned_cols=40 Identities=13% Similarity=0.341 Sum_probs=31.9
Q ss_pred CCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 029862 113 RVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 154 (186)
Q Consensus 113 R~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P~ 154 (186)
|-+|||..|+++.+. +..+|+++..|.-+.++..|+..+.
T Consensus 11 rP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~ 50 (101)
T 1v63_A 11 PPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQ 50 (101)
T ss_dssp CCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCH
T ss_pred CCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 358999999999964 3445567889999999999997543
No 35
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.19 E-value=0.022 Score=42.19 Aligned_cols=44 Identities=16% Similarity=0.406 Sum_probs=37.1
Q ss_pred CCCCC-CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 029862 107 PPEKR-QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 154 (186)
Q Consensus 107 PPEKR-QR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P~ 154 (186)
-|.+- .|-+|||..|+++.-..|| +++..|.-+.++..|+..+.
T Consensus 13 d~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~ 57 (108)
T 1v64_A 13 FDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQ 57 (108)
T ss_dssp TTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCH
Confidence 34444 5679999999999999988 89999999999999997654
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=94.29 E-value=0.011 Score=49.05 Aligned_cols=42 Identities=33% Similarity=0.600 Sum_probs=36.7
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 108 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 108 PEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
|.+-.|-+|||+.|+++...+||.++|+ |..+.++..|+..+
T Consensus 144 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 185 (238)
T 3tmm_A 144 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 185 (238)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCC
Confidence 5556788999999999999999988876 89999999999754
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=94.15 E-value=0.012 Score=48.07 Aligned_cols=42 Identities=33% Similarity=0.600 Sum_probs=36.5
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 108 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 108 PEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
|.+-.|-+|||..|+++...+|+.++|+ |..+.++..|+..+
T Consensus 112 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 153 (214)
T 3tq6_A 112 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 153 (214)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCC
T ss_pred ccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCC
Confidence 4455678999999999999999988886 89999999999764
No 38
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=93.43 E-value=0.0092 Score=43.97 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=34.8
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 029862 108 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 153 (186)
Q Consensus 108 PEKRQR~psayN~fmK~ei~riK~~~P~i~hkEaF~~aAknW~~~P 153 (186)
|-+-.|.||||-.|+.++-.+||++||+++ +.|..+|+.|+..+
T Consensus 20 pnaPKRp~sAf~lf~~e~R~kik~enP~~s--~~~~eIse~Wk~ls 63 (90)
T 2yuk_A 20 EALGEMATVAPVLYTNINFPNLKEEFPDWT--TRVKQIAKLWRKAS 63 (90)
T ss_dssp HHHGGGCSSSHHHHHHHHCTTHHHHCCSHH--HHHHHHHHHHHHSC
T ss_pred CCCCCCCccHHHHHHHHhHHHHHHHCcCcc--chHHHHHHHHHcCC
Confidence 333467899999999999999999999985 33555669998643
No 39
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.36 E-value=0.14 Score=37.60 Aligned_cols=39 Identities=18% Similarity=0.429 Sum_probs=33.8
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHH---HHhhccC
Q 029862 112 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTA---AKNWAHF 152 (186)
Q Consensus 112 QR~psayN~fmK~ei~riK~~~P~i~hkEaF~~a---AknW~~~ 152 (186)
.|-+|||..|+++.-.+||.+ +++-.|.=+.. ...|+..
T Consensus 12 KRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~l 53 (93)
T 2cto_A 12 KASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALL 53 (93)
T ss_dssp CSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcC
Confidence 567999999999999999998 78888877777 9999864
No 40
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=61.35 E-value=2.7 Score=31.85 Aligned_cols=33 Identities=27% Similarity=0.564 Sum_probs=24.4
Q ss_pred eCCCcceeeEecccCCC-cc----ceeeeecccCCCcc
Q 029862 14 HCNYCNTILAVSVPCSS-LF----NIVTVRCGHCANLL 46 (186)
Q Consensus 14 ~CnfCnTiLaVsVPcss-L~----~~VTVRCGHCtnLl 46 (186)
-|.-|+|+|.=|+=|+- +- ..|.++|++|.+.-
T Consensus 67 ~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~k 104 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIM 104 (120)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEE
Confidence 59999999986665531 21 25899999998764
No 41
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=60.17 E-value=4.3 Score=29.61 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=34.7
Q ss_pred EEeCCCcceeeEecccCCCccceeeeecccCCCcccccccccc
Q 029862 12 YVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSAL 54 (186)
Q Consensus 12 YV~CnfCnTiLaVsVPcssL~~~VTVRCGHCtnLlSVNm~~ll 54 (186)
+-.|-|||..=+|+|=...--.+-++.|+-|.--...++..|.
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~ 65 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLS 65 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSC
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccC
Confidence 3479999999888988888888999999999876655555543
No 42
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=59.60 E-value=3.1 Score=36.23 Aligned_cols=29 Identities=24% Similarity=0.776 Sum_probs=23.2
Q ss_pred CceeEEeCCCcceeeEecccCCCccceeeeecccCCCcc
Q 029862 8 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLL 46 (186)
Q Consensus 8 E~lCYV~CnfCnTiLaVsVPcssL~~~VTVRCGHCtnLl 46 (186)
+..=|-||++|.|- ...|-++|-+|.|--
T Consensus 204 ~G~R~l~Cs~C~t~----------W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 204 TGLRYLSCSLCACE----------WHYVRIKCSHCEESK 232 (309)
T ss_dssp CCEEEEEETTTCCE----------EECCTTSCSSSCCCS
T ss_pred CCcEEEEeCCCCCE----------EeecCcCCcCCCCCC
Confidence 44559999999885 477889999999953
No 43
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=58.62 E-value=2.8 Score=31.97 Aligned_cols=33 Identities=21% Similarity=0.603 Sum_probs=24.2
Q ss_pred eCCCcceeeEecccCCC-cc----ceeeeecccCCCcc
Q 029862 14 HCNYCNTILAVSVPCSS-LF----NIVTVRCGHCANLL 46 (186)
Q Consensus 14 ~CnfCnTiLaVsVPcss-L~----~~VTVRCGHCtnLl 46 (186)
-|.-|+++|.=|+=|+- +- ..|.++|++|.+.-
T Consensus 62 ~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~k 99 (123)
T 2k3r_A 62 YCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIM 99 (123)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEE
Confidence 59999999986655531 11 35899999999764
No 44
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=30.92 E-value=14 Score=29.27 Aligned_cols=36 Identities=19% Similarity=0.469 Sum_probs=27.2
Q ss_pred eEEeCCCc---ceeeEecccCCCccceeeeecccCCCcccccccc
Q 029862 11 CYVHCNYC---NTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVS 52 (186)
Q Consensus 11 CYV~CnfC---nTiLaVsVPcssL~~~VTVRCGHCtnLlSVNm~~ 52 (186)
-||.|.-| +|.|.+- + .+...+|.-|..-.+|.++.
T Consensus 103 ~yVlC~~C~sPdT~L~k~---~---r~~~l~C~ACGa~~~V~~~k 141 (148)
T 2d74_B 103 EYVICPVCGSPDTKIIKR---D---RFHFLKCEACGAETPIQHLL 141 (148)
T ss_dssp HHSSCSSSCCTTCCCCBS---S---SSBCCCCSSSCCCCCCCC--
T ss_pred HEEECCCCCCcCcEEEEe---C---CEEEEEecCCCCCccccchh
Confidence 48999999 4777762 2 56778999999999998764
No 45
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=28.10 E-value=22 Score=26.92 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=23.2
Q ss_pred eCCCcceeeEecccCCC-ccceeeeecccCCCc--cccccc
Q 029862 14 HCNYCNTILAVSVPCSS-LFNIVTVRCGHCANL--LNVNMV 51 (186)
Q Consensus 14 ~CnfCnTiLaVsVPcss-L~~~VTVRCGHCtnL--lSVNm~ 51 (186)
-|+-|+|-=+-.+-=.+ =--+|-|+|..|.|. +.=|++
T Consensus 15 TC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~HlIaDnLg 55 (100)
T 2e2z_A 15 TCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLK 55 (100)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEESCCSSC
T ss_pred EccCCCCcchhhcCHHHhhCCEEEEEcCCCccceEeehhhh
Confidence 58888886543221111 224899999999996 333444
No 46
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=26.83 E-value=17 Score=22.46 Aligned_cols=7 Identities=71% Similarity=1.213 Sum_probs=5.8
Q ss_pred CCCCCCc
Q 029862 109 EKRQRVP 115 (186)
Q Consensus 109 EKRQR~p 115 (186)
-||||+|
T Consensus 26 pKRQR~P 32 (32)
T 3uky_C 26 PKRQRIP 32 (32)
T ss_pred cccccCC
Confidence 4899997
No 47
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.77 E-value=26 Score=23.44 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHhhCCCC
Q 029862 116 SAYNRFIKEEIQRIKASNPDI 136 (186)
Q Consensus 116 sayN~fmK~ei~riK~~~P~i 136 (186)
||-|.|++..|+|+|..|-.+
T Consensus 2 sarnaylrkkiarlkkdnlql 22 (52)
T 3he5_B 2 SARNAYLRKKIARLKKDNLQL 22 (52)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhhhhhh
Confidence 678999999999999877543
No 48
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=25.96 E-value=34 Score=27.78 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=28.7
Q ss_pred eEEeCCCc---ceeeEecccCCCccceeeeecccCCCcccccccc
Q 029862 11 CYVHCNYC---NTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVS 52 (186)
Q Consensus 11 CYV~CnfC---nTiLaVsVPcssL~~~VTVRCGHCtnLlSVNm~~ 52 (186)
-||.|.-| +|.|.+.. -+ .+...+|--|....+|.++.
T Consensus 95 ~YVlC~~C~sPdT~L~k~~-~~---r~~~l~C~ACGa~~~V~~~~ 135 (170)
T 2g2k_A 95 KFVLCPECENPETDLHVNP-KK---QTIGNSCKACGYRGMLDTHH 135 (170)
T ss_dssp HHHSCTTTSSSCEEEEEET-TT---TEEEEEETTTCCCCCSCSSS
T ss_pred HeEECCCCCCCccEEEEec-CC---CEEEEEccccCCcccccccc
Confidence 48999999 58887721 12 34668999999999998863
No 49
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.82 E-value=32 Score=24.04 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=10.1
Q ss_pred EeCCCcceeeEe
Q 029862 13 VHCNYCNTILAV 24 (186)
Q Consensus 13 V~CnfCnTiLaV 24 (186)
|.|..|.|+|+=
T Consensus 35 V~C~~Cgt~L~~ 46 (63)
T 3j20_W 35 VRCLICGATLVE 46 (63)
T ss_dssp EECSSSCCEEEE
T ss_pred EEccCcCCEEec
Confidence 789999999874
No 50
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=23.44 E-value=39 Score=23.69 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhhc
Q 029862 120 RFIKEEIQRIKASNPDISHREAFSTAAKNWA 150 (186)
Q Consensus 120 ~fmK~ei~riK~~~P~i~hkEaF~~aAknW~ 150 (186)
+=++.||.+|+.+.-.||-.+-|..=||+=+
T Consensus 9 ~~l~~E~~~lk~E~~stSaQDeFAKWaKL~R 39 (65)
T 3sja_C 9 LAKVKERHELKEFNNSISAQDNYAKWTKNNR 39 (65)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 4578999999999999999999987776533
No 51
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.93 E-value=32 Score=27.52 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=28.3
Q ss_pred eEEeCCCc---ceeeEecccCCCccceeeeecccCCCcccccccc
Q 029862 11 CYVHCNYC---NTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVS 52 (186)
Q Consensus 11 CYV~CnfC---nTiLaVsVPcssL~~~VTVRCGHCtnLlSVNm~~ 52 (186)
-||.|.-| +|.|.+. . ==.+...+|--|....+|.++.
T Consensus 102 ~YVlC~~C~sPdT~L~~~-~---~~r~~~l~C~ACGa~~~V~~~~ 142 (157)
T 2e9h_A 102 KFVLCPECENPETDLHVN-P---KKQTIGNSCKACGYRGMLDTHH 142 (157)
T ss_dssp HTTSCTTTCCSCCEEEEE-T---TTTEEEEECSSSCCEEECCCCS
T ss_pred HeEECCCCCCCccEEEEe-c---CCCEEEEEccCCCCCCcccchh
Confidence 48999999 4777662 0 1246788999999999998763
No 52
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=20.90 E-value=29 Score=22.09 Aligned_cols=13 Identities=38% Similarity=0.647 Sum_probs=10.3
Q ss_pred HHHHHHHHhhCCC
Q 029862 123 KEEIQRIKASNPD 135 (186)
Q Consensus 123 K~ei~riK~~~P~ 135 (186)
.+||+|+|++|-+
T Consensus 20 deeIa~Lk~eN~e 32 (37)
T 1t6f_A 20 DNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH
Confidence 4799999998743
No 53
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=20.61 E-value=43 Score=23.60 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=11.7
Q ss_pred EeCCCcceeeEecccC
Q 029862 13 VHCNYCNTILAVSVPC 28 (186)
Q Consensus 13 V~CnfCnTiLaVsVPc 28 (186)
|.|.-|.|+|+---=.
T Consensus 27 V~C~~Cg~~L~~PTGG 42 (66)
T 1qxf_A 27 VKCIICGRTVAEPTGG 42 (66)
T ss_dssp EECSSSCCEEEECCSS
T ss_pred EEcccCCCEEeecCCc
Confidence 7899999998754333
No 54
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=20.52 E-value=48 Score=20.69 Aligned_cols=12 Identities=58% Similarity=0.656 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhh
Q 029862 121 FIKEEIQRIKAS 132 (186)
Q Consensus 121 fmK~ei~riK~~ 132 (186)
-|.||||.||++
T Consensus 13 aieeeiqaikee 24 (36)
T 1bb1_B 13 AIEEEIQAIKEE 24 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 466777777765
No 55
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=20.19 E-value=32 Score=27.42 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHH
Q 029862 122 IKEEIQRIKASNPDISHREAFS 143 (186)
Q Consensus 122 mK~ei~riK~~~P~i~hkEaF~ 143 (186)
|+++|..++++||++..++.-.
T Consensus 1 m~~~~~~~~~~~P~~~~~dla~ 22 (174)
T 2ph0_A 1 MTMTLNELLATNPDGTLEDIAG 22 (174)
T ss_dssp -CCCHHHHHHTCCCSCHHHHHH
T ss_pred ChHHHHHHHHHCcCchHHHHHH
Confidence 6778999999999998887544
Done!