Query 029863
Match_columns 186
No_of_seqs 218 out of 1991
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 1.7E-30 3.6E-35 189.5 13.2 106 81-186 43-148 (150)
2 cd03065 PDI_b_Calsequestrin_N 99.9 1.5E-25 3.3E-30 160.4 12.8 105 81-186 9-119 (120)
3 cd02954 DIM1 Dim1 family; Dim1 99.9 8.8E-25 1.9E-29 154.6 13.1 88 88-175 2-90 (114)
4 PF00085 Thioredoxin: Thioredo 99.9 2.3E-24 4.9E-29 149.3 12.8 103 83-185 1-103 (103)
5 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.2E-24 2.5E-29 154.6 10.6 101 81-181 9-112 (113)
6 PHA02278 thioredoxin-like prot 99.9 3.3E-24 7.1E-29 149.9 12.3 93 88-181 4-100 (103)
7 PRK09381 trxA thioredoxin; Pro 99.9 5.7E-24 1.2E-28 149.8 13.0 106 81-186 3-108 (109)
8 COG3118 Thioredoxin domain-con 99.9 1.4E-24 2.9E-29 173.9 10.7 104 83-186 25-130 (304)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 2.2E-24 4.9E-29 149.9 10.2 99 82-181 2-100 (101)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 2.9E-24 6.2E-29 150.0 10.5 100 83-182 3-104 (104)
11 cd02963 TRX_DnaJ TRX domain, D 99.9 1E-23 2.2E-28 149.5 11.5 101 85-185 8-111 (111)
12 cd02956 ybbN ybbN protein fami 99.9 1.4E-23 3.1E-28 144.3 11.4 94 90-183 2-96 (96)
13 cd02985 TRX_CDSP32 TRX family, 99.9 3.4E-23 7.3E-28 144.8 12.7 96 87-184 2-101 (103)
14 PRK10996 thioredoxin 2; Provis 99.9 4.7E-23 1E-27 151.6 13.8 106 80-186 34-139 (139)
15 KOG0907 Thioredoxin [Posttrans 99.9 3.5E-23 7.6E-28 145.1 11.5 89 95-185 17-105 (106)
16 cd02965 HyaE HyaE family; HyaE 99.9 4.1E-23 8.9E-28 145.2 11.9 100 80-180 9-110 (111)
17 PLN00410 U5 snRNP protein, DIM 99.9 1E-22 2.2E-27 149.3 12.3 99 87-185 10-119 (142)
18 cd02948 TRX_NDPK TRX domain, T 99.9 2.1E-22 4.5E-27 140.6 12.6 96 87-185 6-102 (102)
19 cd03002 PDI_a_MPD1_like PDI fa 99.9 1.5E-22 3.1E-27 142.2 10.5 101 83-183 2-109 (109)
20 cd02996 PDI_a_ERp44 PDIa famil 99.9 1.6E-22 3.4E-27 142.3 10.5 100 82-182 2-108 (108)
21 cd02994 PDI_a_TMX PDIa family, 99.9 2.3E-22 5E-27 139.6 11.0 98 83-184 3-101 (101)
22 cd03005 PDI_a_ERp46 PDIa famil 99.9 3.6E-22 7.7E-27 138.4 11.1 98 83-182 2-102 (102)
23 TIGR01068 thioredoxin thioredo 99.9 8E-22 1.7E-26 135.8 12.8 101 86-186 1-101 (101)
24 cd02999 PDI_a_ERp44_like PDIa 99.9 2.1E-22 4.6E-27 140.1 9.7 85 96-182 15-100 (100)
25 PTZ00443 Thioredoxin domain-co 99.9 7.7E-22 1.7E-26 155.3 12.5 106 80-185 29-138 (224)
26 cd03001 PDI_a_P5 PDIa family, 99.9 8.5E-22 1.9E-26 136.7 11.0 100 83-182 2-102 (103)
27 cd02957 Phd_like Phosducin (Ph 99.9 2E-21 4.3E-26 138.0 11.8 90 81-172 4-95 (113)
28 TIGR01126 pdi_dom protein disu 99.9 2E-21 4.3E-26 134.3 11.2 100 86-186 1-102 (102)
29 cd02949 TRX_NTR TRX domain, no 99.9 3.2E-21 6.9E-26 133.2 12.0 93 91-183 5-97 (97)
30 cd02950 TxlA TRX-like protein 99.9 2.3E-21 5E-26 143.1 11.5 97 89-186 11-110 (142)
31 cd02986 DLP Dim1 family, Dim1- 99.9 6E-21 1.3E-25 134.3 12.2 96 89-184 3-109 (114)
32 cd02989 Phd_like_TxnDC9 Phosdu 99.9 7.7E-21 1.7E-25 135.1 12.5 88 83-172 6-94 (113)
33 cd02997 PDI_a_PDIR PDIa family 99.9 4.5E-21 9.8E-26 133.2 11.1 99 83-182 2-104 (104)
34 cd02962 TMX2 TMX2 family; comp 99.9 6.6E-21 1.4E-25 141.8 12.1 91 81-171 28-126 (152)
35 cd02984 TRX_PICOT TRX domain, 99.9 1.3E-20 2.7E-25 129.6 11.6 94 88-182 2-96 (97)
36 cd02998 PDI_a_ERp38 PDIa famil 99.8 5.8E-21 1.3E-25 132.6 9.4 100 83-182 2-105 (105)
37 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 8.3E-21 1.8E-25 131.8 9.4 99 83-182 2-104 (104)
38 cd02953 DsbDgamma DsbD gamma f 99.8 1E-20 2.2E-25 132.1 8.4 94 89-183 2-104 (104)
39 cd03000 PDI_a_TMX3 PDIa family 99.8 4.5E-20 9.9E-25 128.9 10.9 94 89-185 7-103 (104)
40 PTZ00051 thioredoxin; Provisio 99.8 5.4E-20 1.2E-24 126.8 10.7 90 87-179 7-96 (98)
41 cd02987 Phd_like_Phd Phosducin 99.8 6.6E-20 1.4E-24 139.7 12.1 103 80-184 61-173 (175)
42 cd02975 PfPDO_like_N Pyrococcu 99.8 6.3E-20 1.4E-24 130.4 10.2 89 97-186 20-110 (113)
43 cd02993 PDI_a_APS_reductase PD 99.8 7.5E-20 1.6E-24 129.0 10.5 101 82-182 2-109 (109)
44 TIGR01295 PedC_BrcD bacterioci 99.8 3E-19 6.4E-24 128.6 12.1 100 81-183 6-121 (122)
45 cd02961 PDI_a_family Protein D 99.8 1.4E-19 3E-24 123.9 9.6 97 85-182 2-101 (101)
46 cd02951 SoxW SoxW family; SoxW 99.8 3.5E-19 7.6E-24 128.3 10.8 95 90-185 5-118 (125)
47 KOG0908 Thioredoxin-like prote 99.8 2.6E-19 5.7E-24 139.8 9.0 97 87-185 8-105 (288)
48 cd02988 Phd_like_VIAF Phosduci 99.8 1.8E-18 4E-23 133.5 11.3 101 80-184 81-190 (192)
49 cd02947 TRX_family TRX family; 99.8 3.9E-18 8.5E-23 114.5 11.4 92 90-183 2-93 (93)
50 PTZ00102 disulphide isomerase; 99.8 2E-18 4.3E-23 149.6 11.1 106 80-185 356-464 (477)
51 cd02992 PDI_a_QSOX PDIa family 99.8 1.5E-18 3.2E-23 123.5 8.3 84 82-165 2-90 (114)
52 TIGR00424 APS_reduc 5'-adenyly 99.8 4.4E-18 9.6E-23 146.1 11.5 110 76-185 346-462 (463)
53 TIGR00411 redox_disulf_1 small 99.8 1.3E-17 2.9E-22 111.1 11.0 81 102-186 2-82 (82)
54 TIGR01130 ER_PDI_fam protein d 99.8 8.3E-18 1.8E-22 144.7 12.5 103 82-185 2-108 (462)
55 PLN02309 5'-adenylylsulfate re 99.8 1.1E-17 2.4E-22 143.6 12.3 110 76-185 340-456 (457)
56 cd02982 PDI_b'_family Protein 99.7 9.5E-18 2.1E-22 116.4 9.1 88 99-186 12-103 (103)
57 KOG0190 Protein disulfide isom 99.7 4.7E-18 1E-22 145.7 8.7 105 79-184 23-130 (493)
58 PTZ00102 disulphide isomerase; 99.7 2.4E-17 5.2E-22 142.9 12.9 103 81-185 32-137 (477)
59 PRK15412 thiol:disulfide inter 99.7 5.1E-17 1.1E-21 124.9 10.8 106 78-186 45-176 (185)
60 cd02952 TRP14_like Human TRX-r 99.7 4.6E-17 9.9E-22 116.3 9.3 93 87-182 8-118 (119)
61 cd03007 PDI_a_ERp29_N PDIa fam 99.7 3.9E-17 8.4E-22 115.9 8.2 97 83-184 3-114 (116)
62 PTZ00062 glutaredoxin; Provisi 99.7 1.2E-16 2.7E-21 124.1 11.3 88 87-184 5-92 (204)
63 PF13098 Thioredoxin_2: Thiore 99.7 3.7E-17 7.9E-22 115.2 5.1 86 97-182 3-112 (112)
64 TIGR00385 dsbE periplasmic pro 99.7 3.1E-16 6.8E-21 119.2 10.3 107 77-186 39-171 (173)
65 PRK14018 trifunctional thiored 99.7 2.5E-16 5.4E-21 137.0 10.5 103 79-184 39-171 (521)
66 cd02959 ERp19 Endoplasmic reti 99.7 8.3E-17 1.8E-21 115.0 5.9 78 95-172 15-96 (117)
67 TIGR02187 GlrX_arch Glutaredox 99.7 5.3E-16 1.1E-20 121.9 10.2 87 99-185 19-110 (215)
68 cd03010 TlpA_like_DsbE TlpA-li 99.7 4.5E-16 9.8E-21 112.1 8.8 79 98-178 24-126 (127)
69 TIGR01130 ER_PDI_fam protein d 99.7 3.8E-16 8.3E-21 134.3 9.9 104 80-185 345-453 (462)
70 TIGR02738 TrbB type-F conjugat 99.7 1.3E-15 2.8E-20 113.6 10.7 87 98-186 49-153 (153)
71 TIGR02187 GlrX_arch Glutaredox 99.6 3.6E-15 7.8E-20 117.2 12.4 95 85-184 119-214 (215)
72 PRK11509 hydrogenase-1 operon 99.6 7.8E-15 1.7E-19 106.1 12.5 104 82-186 18-124 (132)
73 TIGR00412 redox_disulf_2 small 99.6 1.6E-15 3.5E-20 100.2 8.2 73 103-182 2-75 (76)
74 PRK00293 dipZ thiol:disulfide 99.6 1.8E-15 3.9E-20 134.1 10.9 98 87-185 459-569 (571)
75 cd02955 SSP411 TRX domain, SSP 99.6 5.2E-15 1.1E-19 106.6 10.4 97 87-184 4-117 (124)
76 PHA02125 thioredoxin-like prot 99.6 3.6E-15 7.8E-20 98.3 8.8 71 103-182 2-73 (75)
77 PRK03147 thiol-disulfide oxido 99.6 7.2E-15 1.6E-19 111.0 10.9 108 77-185 40-171 (173)
78 KOG0190 Protein disulfide isom 99.6 7.6E-16 1.6E-20 132.2 6.1 102 81-184 366-471 (493)
79 cd03008 TryX_like_RdCVF Trypar 99.6 4.1E-15 8.9E-20 109.9 8.7 71 98-168 24-128 (146)
80 TIGR02740 TraF-like TraF-like 99.6 1.9E-14 4.1E-19 116.8 12.9 85 98-184 165-262 (271)
81 KOG4277 Uncharacterized conser 99.6 2.2E-15 4.9E-20 121.0 6.9 99 82-184 29-130 (468)
82 PLN02399 phospholipid hydroper 99.6 3.7E-14 8.1E-19 112.6 13.0 111 75-186 76-234 (236)
83 PLN02919 haloacid dehalogenase 99.6 1.2E-14 2.5E-19 136.6 11.4 88 98-185 419-535 (1057)
84 cd03009 TryX_like_TryX_NRX Try 99.6 1E-14 2.2E-19 105.7 8.4 71 98-168 17-115 (131)
85 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 2.1E-14 4.6E-19 102.6 9.4 93 83-180 5-120 (123)
86 cd02964 TryX_like_family Trypa 99.6 1.8E-14 3.9E-19 104.7 8.1 71 98-168 16-115 (132)
87 PF13905 Thioredoxin_8: Thiore 99.6 2.4E-14 5.2E-19 97.9 8.3 66 99-164 1-94 (95)
88 KOG0912 Thiol-disulfide isomer 99.5 1.1E-14 2.4E-19 117.0 6.6 98 87-185 2-105 (375)
89 PTZ00056 glutathione peroxidas 99.5 3.1E-14 6.7E-19 110.7 8.7 106 80-186 21-178 (199)
90 PRK13728 conjugal transfer pro 99.5 8.5E-14 1.8E-18 106.0 10.5 82 103-186 73-171 (181)
91 KOG0191 Thioredoxin/protein di 99.5 6.5E-14 1.4E-18 118.9 9.8 97 88-184 36-132 (383)
92 cd02973 TRX_GRX_like Thioredox 99.5 1.1E-13 2.4E-18 88.8 8.1 61 102-165 2-62 (67)
93 cd02967 mauD Methylamine utili 99.5 6E-14 1.3E-18 99.0 7.4 70 98-167 20-110 (114)
94 cd02966 TlpA_like_family TlpA- 99.5 1E-13 2.2E-18 96.3 8.4 74 98-171 18-116 (116)
95 cd03026 AhpF_NTD_C TRX-GRX-lik 99.5 3.2E-13 6.9E-18 91.9 10.3 75 99-178 12-86 (89)
96 TIGR01626 ytfJ_HI0045 conserve 99.5 1.5E-13 3.3E-18 105.1 9.6 83 98-183 58-177 (184)
97 TIGR02540 gpx7 putative glutat 99.5 1.8E-13 4E-18 101.9 9.6 103 83-186 7-153 (153)
98 PF08534 Redoxin: Redoxin; In 99.5 1.1E-13 2.4E-18 101.9 8.2 95 86-181 16-145 (146)
99 cd02958 UAS UAS family; UAS is 99.5 4.1E-13 8.9E-18 95.2 10.7 91 95-185 13-110 (114)
100 cd03012 TlpA_like_DipZ_like Tl 99.5 4.2E-13 9.1E-18 96.7 9.3 75 98-172 22-125 (126)
101 PLN02412 probable glutathione 99.4 4.2E-13 9.2E-18 101.5 8.7 105 81-186 12-164 (167)
102 PRK10877 protein disulfide iso 99.4 7.2E-13 1.5E-17 105.3 10.0 138 41-185 36-230 (232)
103 TIGR02661 MauD methylamine deh 99.4 7.1E-13 1.5E-17 102.2 9.3 106 75-184 49-177 (189)
104 cd00340 GSH_Peroxidase Glutath 99.4 6.8E-13 1.5E-17 98.7 7.5 83 98-181 21-151 (152)
105 cd02969 PRX_like1 Peroxiredoxi 99.4 4.8E-12 1E-16 95.8 10.9 105 82-186 8-152 (171)
106 KOG0191 Thioredoxin/protein di 99.4 1.3E-12 2.8E-17 111.0 8.6 104 82-185 145-251 (383)
107 KOG1731 FAD-dependent sulfhydr 99.4 3.3E-13 7.1E-18 116.4 3.1 81 81-161 39-124 (606)
108 PTZ00256 glutathione peroxidas 99.3 7.8E-12 1.7E-16 95.9 9.8 106 80-186 22-181 (183)
109 smart00594 UAS UAS domain. 99.3 2.5E-11 5.4E-16 87.2 10.0 88 95-182 23-121 (122)
110 cd02960 AGR Anterior Gradient 99.3 7.5E-12 1.6E-16 90.5 6.9 79 94-174 18-101 (130)
111 COG0526 TrxA Thiol-disulfide i 99.3 1.2E-11 2.6E-16 85.2 7.7 85 99-183 32-121 (127)
112 cd03017 PRX_BCP Peroxiredoxin 99.3 2.5E-11 5.4E-16 88.4 9.4 85 98-182 22-139 (140)
113 COG4232 Thiol:disulfide interc 99.3 1.5E-11 3.3E-16 107.0 8.8 101 84-185 457-567 (569)
114 cd03020 DsbA_DsbC_DsbG DsbA fa 99.3 2.3E-11 4.9E-16 94.3 8.3 131 44-182 5-197 (197)
115 PF13899 Thioredoxin_7: Thiore 99.2 3.7E-11 8E-16 80.3 5.5 66 95-161 13-81 (82)
116 PRK09437 bcp thioredoxin-depen 99.2 2.9E-10 6.2E-15 84.5 10.2 105 79-184 11-151 (154)
117 PRK00522 tpx lipid hydroperoxi 99.2 2.3E-10 5E-15 86.5 9.2 73 98-171 43-149 (167)
118 cd03014 PRX_Atyp2cys Peroxired 99.1 3.9E-10 8.4E-15 82.7 9.4 84 98-182 25-141 (143)
119 PRK10606 btuE putative glutath 99.1 1.9E-10 4.2E-15 88.2 7.8 103 82-186 9-181 (183)
120 PF00578 AhpC-TSA: AhpC/TSA fa 99.1 1.8E-10 4E-15 82.0 7.0 87 80-167 7-123 (124)
121 KOG2501 Thioredoxin, nucleored 99.1 2.1E-10 4.6E-15 84.8 7.0 70 98-167 32-130 (157)
122 cd03015 PRX_Typ2cys Peroxiredo 99.1 1E-09 2.2E-14 83.3 10.4 87 98-184 28-155 (173)
123 PRK11657 dsbG disulfide isomer 99.1 6.8E-10 1.5E-14 89.3 9.5 132 48-183 45-249 (251)
124 COG2143 Thioredoxin-related pr 99.1 1.1E-09 2.3E-14 80.5 9.3 89 96-184 39-147 (182)
125 TIGR03137 AhpC peroxiredoxin. 99.1 8.2E-10 1.8E-14 85.0 9.2 87 98-184 30-154 (187)
126 TIGR02196 GlrX_YruB Glutaredox 99.1 7.6E-10 1.6E-14 71.3 7.4 69 103-183 2-74 (74)
127 KOG0914 Thioredoxin-like prote 99.1 1.7E-10 3.8E-15 89.0 4.9 91 81-171 124-223 (265)
128 cd03018 PRX_AhpE_like Peroxire 99.1 1.3E-09 2.9E-14 80.2 9.4 86 98-183 26-148 (149)
129 cd02970 PRX_like2 Peroxiredoxi 99.0 2E-09 4.2E-14 79.0 9.0 74 98-171 22-148 (149)
130 PF14595 Thioredoxin_9: Thiore 99.0 5.1E-10 1.1E-14 81.2 5.7 96 86-184 28-127 (129)
131 cd02968 SCO SCO (an acronym fo 99.0 9.9E-10 2.1E-14 80.1 7.1 43 98-140 21-68 (142)
132 TIGR02200 GlrX_actino Glutared 99.0 1.6E-09 3.5E-14 70.8 7.4 70 103-183 2-76 (77)
133 PF02114 Phosducin: Phosducin; 99.0 1.1E-09 2.4E-14 88.5 7.9 103 81-185 125-237 (265)
134 cd02971 PRX_family Peroxiredox 99.0 2.6E-09 5.7E-14 77.6 9.0 77 98-174 21-131 (140)
135 PF03190 Thioredox_DsbH: Prote 99.0 3.5E-09 7.6E-14 79.3 8.8 92 76-168 15-118 (163)
136 PF13192 Thioredoxin_3: Thiore 99.0 5.1E-09 1.1E-13 69.0 8.6 72 105-183 4-76 (76)
137 cd01659 TRX_superfamily Thiore 99.0 3.4E-09 7.4E-14 65.0 6.8 60 103-163 1-63 (69)
138 PRK10382 alkyl hydroperoxide r 98.9 6.5E-09 1.4E-13 80.0 9.5 87 98-184 30-154 (187)
139 PF13728 TraF: F plasmid trans 98.9 2.5E-08 5.5E-13 78.4 11.4 83 98-182 119-214 (215)
140 PRK13190 putative peroxiredoxi 98.9 2.2E-08 4.7E-13 78.0 10.6 88 98-185 26-153 (202)
141 cd02991 UAS_ETEA UAS family, E 98.8 7.4E-08 1.6E-12 68.6 11.2 88 95-185 13-112 (116)
142 cd03016 PRX_1cys Peroxiredoxin 98.8 4.4E-08 9.5E-13 76.4 10.1 86 100-185 26-153 (203)
143 PRK15000 peroxidase; Provision 98.8 6.8E-08 1.5E-12 75.1 10.9 87 98-184 33-160 (200)
144 KOG1672 ATP binding protein [P 98.8 2.5E-08 5.5E-13 75.8 7.8 84 87-172 73-156 (211)
145 TIGR02180 GRX_euk Glutaredoxin 98.8 3.7E-08 8.1E-13 65.3 7.2 71 103-183 1-76 (84)
146 PRK13599 putative peroxiredoxi 98.8 9.4E-08 2E-12 75.2 10.5 88 98-185 27-155 (215)
147 KOG0913 Thiol-disulfide isomer 98.7 2.5E-09 5.3E-14 83.5 0.5 98 82-183 25-123 (248)
148 TIGR03143 AhpF_homolog putativ 98.7 1.4E-07 2.9E-12 84.0 11.4 93 84-182 461-554 (555)
149 KOG3414 Component of the U4/U6 98.7 3.5E-07 7.6E-12 64.9 11.0 98 87-184 10-118 (142)
150 PTZ00137 2-Cys peroxiredoxin; 98.7 3.1E-07 6.7E-12 74.1 11.9 88 98-185 97-224 (261)
151 PRK13189 peroxiredoxin; Provis 98.7 2E-07 4.4E-12 73.7 10.4 88 98-185 34-162 (222)
152 TIGR02739 TraF type-F conjugat 98.7 3.1E-07 6.8E-12 73.8 11.4 85 98-184 149-246 (256)
153 PF07449 HyaE: Hydrogenase-1 e 98.7 8E-08 1.7E-12 67.1 6.4 95 81-177 9-106 (107)
154 PRK13191 putative peroxiredoxi 98.6 4.1E-07 8.8E-12 71.6 11.0 88 98-185 32-160 (215)
155 PF06110 DUF953: Eukaryotic pr 98.6 1.5E-07 3.2E-12 67.2 7.6 76 89-164 6-100 (119)
156 PRK11200 grxA glutaredoxin 1; 98.6 2.3E-07 4.9E-12 62.2 8.2 75 102-185 2-82 (85)
157 PRK13703 conjugal pilus assemb 98.6 6.9E-07 1.5E-11 71.5 11.3 85 98-184 142-239 (248)
158 PF02966 DIM1: Mitosis protein 98.6 1.7E-06 3.6E-11 62.2 11.9 97 87-184 7-115 (133)
159 PF13848 Thioredoxin_6: Thiore 98.6 6.4E-07 1.4E-11 67.8 10.1 103 81-184 77-184 (184)
160 cd03023 DsbA_Com1_like DsbA fa 98.6 2.2E-07 4.7E-12 68.2 6.8 38 98-136 4-41 (154)
161 cd02976 NrdH NrdH-redoxin (Nrd 98.6 3.6E-07 7.7E-12 58.5 6.9 67 103-181 2-72 (73)
162 PRK15317 alkyl hydroperoxide r 98.5 9.3E-07 2E-11 78.0 11.4 94 84-183 101-195 (517)
163 cd03019 DsbA_DsbA DsbA family, 98.5 3.2E-07 6.9E-12 69.2 6.7 40 98-137 14-53 (178)
164 KOG0911 Glutaredoxin-related p 98.5 4.9E-08 1.1E-12 75.9 1.8 80 98-178 16-95 (227)
165 KOG3425 Uncharacterized conser 98.5 7.8E-07 1.7E-11 62.7 6.9 74 89-162 13-104 (128)
166 PF13462 Thioredoxin_4: Thiore 98.4 3.3E-06 7.2E-11 62.6 10.3 82 98-184 11-162 (162)
167 PTZ00253 tryparedoxin peroxida 98.4 3.4E-06 7.5E-11 65.4 10.8 86 98-183 35-161 (199)
168 PF01216 Calsequestrin: Calseq 98.4 3.7E-06 8E-11 69.4 10.2 103 80-185 33-143 (383)
169 TIGR02183 GRXA Glutaredoxin, G 98.4 2.8E-06 6E-11 57.2 7.7 73 103-184 2-80 (86)
170 PF11009 DUF2847: Protein of u 98.4 5.3E-06 1.1E-10 57.8 9.2 92 87-178 6-104 (105)
171 cd03072 PDI_b'_ERp44 PDIb' fam 98.4 3E-06 6.6E-11 59.8 8.2 101 83-186 1-108 (111)
172 TIGR03140 AhpF alkyl hydropero 98.4 5.2E-06 1.1E-10 73.3 11.4 96 84-184 102-197 (515)
173 PF00462 Glutaredoxin: Glutare 98.3 1.5E-06 3.2E-11 54.3 5.7 55 103-165 1-59 (60)
174 COG1225 Bcp Peroxiredoxin [Pos 98.3 4.3E-06 9.3E-11 62.4 9.0 111 74-185 6-155 (157)
175 TIGR02190 GlrX-dom Glutaredoxi 98.3 4.2E-06 9.2E-11 55.3 7.4 70 99-182 6-78 (79)
176 PRK10954 periplasmic protein d 98.2 2.9E-06 6.3E-11 66.3 6.5 39 99-137 37-78 (207)
177 cd02983 P5_C P5 family, C-term 98.2 1.6E-05 3.6E-10 57.6 9.9 104 82-186 3-115 (130)
178 cd03419 GRX_GRXh_1_2_like Glut 98.2 8.1E-06 1.8E-10 53.8 7.1 69 103-183 2-75 (82)
179 cd03073 PDI_b'_ERp72_ERp57 PDI 98.2 1.2E-05 2.5E-10 56.9 7.5 99 85-186 3-111 (111)
180 TIGR02194 GlrX_NrdH Glutaredox 98.1 9.5E-06 2.1E-10 52.5 5.8 66 104-180 2-70 (72)
181 cd02066 GRX_family Glutaredoxi 98.1 1.5E-05 3.3E-10 50.4 6.5 56 103-166 2-61 (72)
182 TIGR03143 AhpF_homolog putativ 98.1 3.3E-05 7.2E-10 68.8 10.1 94 91-185 357-453 (555)
183 TIGR02189 GlrX-like_plant Glut 98.0 1.4E-05 3E-10 55.3 5.6 54 103-164 10-70 (99)
184 cd02972 DsbA_family DsbA famil 98.0 1.7E-05 3.6E-10 53.1 5.9 59 103-161 1-91 (98)
185 cd03418 GRX_GRXb_1_3_like Glut 97.9 3.6E-05 7.9E-10 49.8 6.3 54 103-164 2-60 (75)
186 PRK10329 glutaredoxin-like pro 97.9 6.1E-05 1.3E-09 50.1 7.4 70 103-184 3-75 (81)
187 PHA03050 glutaredoxin; Provisi 97.9 2.8E-05 6E-10 54.6 5.8 57 103-164 15-78 (108)
188 cd02981 PDI_b_family Protein D 97.9 0.00015 3.3E-09 49.2 9.2 88 89-184 8-96 (97)
189 PF05768 DUF836: Glutaredoxin- 97.9 6.2E-05 1.3E-09 50.0 6.9 78 103-183 2-81 (81)
190 cd03029 GRX_hybridPRX5 Glutare 97.9 9.9E-05 2.2E-09 47.6 7.4 66 103-182 3-71 (72)
191 cd03027 GRX_DEP Glutaredoxin ( 97.9 6.8E-05 1.5E-09 48.5 6.3 54 103-164 3-60 (73)
192 TIGR02181 GRX_bact Glutaredoxi 97.8 3E-05 6.6E-10 50.9 4.3 54 103-164 1-58 (79)
193 COG1331 Highly conserved prote 97.8 6E-05 1.3E-09 67.4 7.3 92 75-167 20-123 (667)
194 PF13743 Thioredoxin_5: Thiore 97.8 1.5E-05 3.2E-10 60.8 3.1 33 105-137 2-34 (176)
195 TIGR00365 monothiol glutaredox 97.8 0.00022 4.8E-09 49.0 8.0 58 99-164 11-76 (97)
196 COG0695 GrxC Glutaredoxin and 97.7 0.00024 5.1E-09 47.1 7.1 67 103-180 3-75 (80)
197 KOG2603 Oligosaccharyltransfer 97.6 0.00031 6.6E-09 57.5 8.2 106 79-184 38-164 (331)
198 KOG3171 Conserved phosducin-li 97.6 0.00016 3.4E-09 56.3 5.8 101 83-185 140-250 (273)
199 PF00837 T4_deiodinase: Iodoth 97.6 0.00047 1E-08 54.6 8.4 109 74-185 75-236 (237)
200 PRK10638 glutaredoxin 3; Provi 97.5 0.00035 7.6E-09 46.4 6.0 54 103-164 4-61 (83)
201 cd03028 GRX_PICOT_like Glutare 97.5 0.00047 1E-08 46.6 6.5 58 99-164 7-72 (90)
202 cd03013 PRX5_like Peroxiredoxi 97.5 0.0012 2.6E-08 49.2 9.2 76 98-173 28-141 (155)
203 COG0386 BtuE Glutathione perox 97.5 0.0014 2.9E-08 48.6 8.9 105 80-186 7-160 (162)
204 PRK10824 glutaredoxin-4; Provi 97.4 0.00065 1.4E-08 48.2 6.6 58 99-164 14-79 (115)
205 PF07912 ERp29_N: ERp29, N-ter 97.3 0.0093 2E-07 42.6 11.1 98 84-184 7-117 (126)
206 PF01323 DSBA: DSBA-like thior 97.3 0.001 2.2E-08 50.6 6.7 35 145-183 159-193 (193)
207 KOG3170 Conserved phosducin-li 97.2 0.00055 1.2E-08 52.7 4.9 99 81-183 91-198 (240)
208 COG1651 DsbG Protein-disulfide 96.9 0.0033 7.1E-08 50.0 6.6 38 143-185 205-242 (244)
209 PRK12759 bifunctional gluaredo 96.8 0.0028 6E-08 54.6 6.1 54 103-164 4-69 (410)
210 PTZ00062 glutaredoxin; Provisi 96.8 0.0053 1.1E-07 47.9 7.0 58 99-164 112-177 (204)
211 PF13848 Thioredoxin_6: Thiore 96.8 0.01 2.2E-07 44.6 8.5 65 117-185 8-74 (184)
212 KOG1752 Glutaredoxin and relat 96.8 0.0042 9E-08 43.3 5.6 60 98-164 12-76 (104)
213 COG2761 FrnE Predicted dithiol 96.8 0.0077 1.7E-07 47.5 7.7 38 145-186 176-213 (225)
214 cd03067 PDI_b_PDIR_N PDIb fami 96.3 0.041 8.9E-07 38.0 7.8 94 88-183 9-109 (112)
215 cd02974 AhpF_NTD_N Alkyl hydro 96.3 0.093 2E-06 35.8 9.6 75 99-186 18-94 (94)
216 KOG2640 Thioredoxin [Function 96.2 0.0017 3.7E-08 53.2 1.0 85 99-185 76-161 (319)
217 COG3019 Predicted metal-bindin 96.1 0.057 1.2E-06 39.3 8.2 73 101-184 26-102 (149)
218 cd03066 PDI_b_Calsequestrin_mi 95.9 0.099 2.2E-06 35.9 8.5 91 87-184 7-99 (102)
219 KOG1651 Glutathione peroxidase 95.7 0.041 9E-07 41.3 6.3 107 79-186 15-169 (171)
220 cd03031 GRX_GRX_like Glutaredo 95.7 0.077 1.7E-06 39.3 7.7 54 103-164 2-69 (147)
221 PRK15317 alkyl hydroperoxide r 95.6 0.093 2E-06 46.5 9.3 84 90-185 9-93 (517)
222 COG1999 Uncharacterized protei 95.3 0.18 3.9E-06 39.4 9.0 105 81-186 50-204 (207)
223 COG0450 AhpC Peroxiredoxin [Po 95.3 0.16 3.4E-06 39.2 8.4 87 99-185 33-160 (194)
224 cd02978 KaiB_like KaiB-like fa 95.3 0.054 1.2E-06 35.1 5.0 59 102-160 3-62 (72)
225 TIGR03140 AhpF alkyl hydropero 95.3 0.14 3.1E-06 45.3 9.3 85 90-185 9-94 (515)
226 cd03041 GST_N_2GST_N GST_N fam 95.3 0.12 2.6E-06 33.4 6.8 70 103-184 2-75 (77)
227 cd03069 PDI_b_ERp57 PDIb famil 95.2 0.33 7.2E-06 33.4 9.1 89 88-185 8-103 (104)
228 COG3531 Predicted protein-disu 95.0 0.071 1.5E-06 41.2 5.7 42 144-185 165-208 (212)
229 cd03060 GST_N_Omega_like GST_N 95.0 0.12 2.5E-06 32.8 6.0 57 104-165 2-59 (71)
230 cd03037 GST_N_GRX2 GST_N famil 94.7 0.16 3.5E-06 32.0 6.0 68 105-183 3-70 (71)
231 TIGR02654 circ_KaiB circadian 94.6 0.14 3E-06 34.5 5.5 73 101-174 4-77 (87)
232 PRK09301 circadian clock prote 94.6 0.13 2.9E-06 35.5 5.6 75 99-174 5-80 (103)
233 cd03040 GST_N_mPGES2 GST_N fam 94.5 0.29 6.2E-06 31.4 7.0 71 103-186 2-76 (77)
234 cd02990 UAS_FAF1 UAS family, F 94.4 1.4 3E-05 32.1 11.0 90 96-185 18-132 (136)
235 KOG0855 Alkyl hydroperoxide re 93.9 0.34 7.4E-06 36.6 7.0 94 74-167 65-189 (211)
236 COG4545 Glutaredoxin-related p 93.9 0.14 3E-06 33.4 4.3 56 104-166 5-76 (85)
237 PF09673 TrbC_Ftype: Type-F co 93.8 0.43 9.4E-06 33.6 7.2 45 116-162 36-80 (113)
238 TIGR02742 TrbC_Ftype type-F co 93.3 0.3 6.5E-06 35.4 5.7 41 137-177 55-106 (130)
239 cd03051 GST_N_GTT2_like GST_N 93.0 0.52 1.1E-05 29.5 6.0 56 104-164 2-61 (74)
240 PF13778 DUF4174: Domain of un 92.5 1.3 2.8E-05 31.4 8.0 85 100-184 10-110 (118)
241 PF02630 SCO1-SenC: SCO1/SenC; 92.1 0.23 4.9E-06 37.6 3.9 59 81-140 35-97 (174)
242 PF09822 ABC_transp_aux: ABC-t 91.9 4.8 0.0001 32.4 11.8 71 82-153 8-88 (271)
243 cd03024 DsbA_FrnE DsbA family, 91.7 0.19 4.1E-06 38.4 3.2 38 142-183 164-201 (201)
244 cd02977 ArsC_family Arsenate R 91.6 0.14 3E-06 35.3 2.2 75 104-184 2-85 (105)
245 PF13417 GST_N_3: Glutathione 91.5 1.9 4.2E-05 27.4 7.4 68 105-184 1-69 (75)
246 KOG2507 Ubiquitin regulatory p 90.9 1.9 4.2E-05 37.2 8.5 88 98-185 17-110 (506)
247 cd03025 DsbA_FrnE_like DsbA fa 90.8 0.43 9.3E-06 36.1 4.4 31 103-133 3-33 (193)
248 COG3634 AhpF Alkyl hydroperoxi 90.5 1.2 2.6E-05 37.8 7.0 94 84-182 101-194 (520)
249 cd00570 GST_N_family Glutathio 90.3 0.73 1.6E-05 27.8 4.5 51 105-159 3-55 (71)
250 cd03059 GST_N_SspA GST_N famil 90.1 2.5 5.4E-05 26.3 6.9 69 104-184 2-71 (73)
251 PF00255 GSHPx: Glutathione pe 89.7 0.61 1.3E-05 32.7 4.0 58 82-141 5-63 (108)
252 PRK01655 spxA transcriptional 89.7 0.45 9.9E-06 34.3 3.4 35 103-143 2-36 (131)
253 cd03036 ArsC_like Arsenate Red 89.4 0.34 7.5E-06 33.8 2.6 34 104-143 2-35 (111)
254 TIGR01617 arsC_related transcr 89.4 0.48 1E-05 33.4 3.3 34 104-143 2-35 (117)
255 cd03074 PDI_b'_Calsequestrin_C 89.3 5.9 0.00013 27.8 10.0 88 99-186 20-120 (120)
256 PHA03075 glutaredoxin-like pro 89.1 0.46 1E-05 33.6 2.9 29 100-128 2-30 (123)
257 cd03068 PDI_b_ERp72 PDIb famil 88.4 6.4 0.00014 27.2 9.8 91 87-184 7-106 (107)
258 KOG2792 Putative cytochrome C 87.7 3.4 7.3E-05 33.5 7.4 88 98-185 138-274 (280)
259 cd03055 GST_N_Omega GST_N fami 87.7 2.8 6.1E-05 27.7 6.1 57 103-164 19-76 (89)
260 cd03045 GST_N_Delta_Epsilon GS 87.5 2.1 4.4E-05 26.9 5.2 51 104-158 2-56 (74)
261 cd03035 ArsC_Yffb Arsenate Red 86.9 0.57 1.2E-05 32.5 2.4 33 104-142 2-34 (105)
262 cd03022 DsbA_HCCA_Iso DsbA fam 86.4 0.85 1.8E-05 34.3 3.3 35 143-182 157-191 (192)
263 PF06053 DUF929: Domain of unk 86.1 2.4 5.3E-05 34.1 5.8 58 96-161 55-113 (249)
264 PF07689 KaiB: KaiB domain; I 85.9 0.18 3.9E-06 33.5 -0.6 51 108-158 5-56 (82)
265 PF04134 DUF393: Protein of un 85.8 0.73 1.6E-05 32.0 2.5 57 106-164 2-61 (114)
266 KOG2244 Highly conserved prote 84.8 1.4 3.1E-05 39.3 4.2 83 77-160 91-184 (786)
267 cd03032 ArsC_Spx Arsenate Redu 84.6 1.5 3.3E-05 30.7 3.7 34 103-142 2-35 (115)
268 PRK00366 ispG 4-hydroxy-3-meth 83.2 2.1 4.5E-05 36.2 4.4 74 111-184 271-355 (360)
269 KOG0852 Alkyl hydroperoxide re 82.8 19 0.00042 27.5 9.2 87 98-184 32-159 (196)
270 PRK12559 transcriptional regul 82.4 1.5 3.3E-05 31.6 3.0 33 103-141 2-34 (131)
271 COG5494 Predicted thioredoxin/ 79.9 7 0.00015 30.8 6.0 73 103-183 13-85 (265)
272 COG3011 Predicted thiol-disulf 78.8 6.7 0.00015 28.6 5.3 66 98-165 5-72 (137)
273 cd03056 GST_N_4 GST_N family, 78.6 9.4 0.0002 23.5 5.5 56 104-165 2-61 (73)
274 cd03025 DsbA_FrnE_like DsbA fa 78.1 2.8 6.2E-05 31.5 3.4 29 143-171 159-187 (193)
275 PF04592 SelP_N: Selenoprotein 77.9 8.9 0.00019 30.6 6.1 45 96-140 23-71 (238)
276 cd03052 GST_N_GDAP1 GST_N fami 77.6 13 0.00027 23.6 5.9 56 104-165 2-61 (73)
277 PF06953 ArsD: Arsenical resis 77.0 22 0.00048 25.4 7.5 50 131-183 40-99 (123)
278 PRK13344 spxA transcriptional 76.1 3.2 6.9E-05 30.0 3.0 34 103-142 2-35 (132)
279 PRK13730 conjugal transfer pil 74.6 7 0.00015 30.5 4.6 34 141-175 150-183 (212)
280 COG0278 Glutaredoxin-related p 73.6 20 0.00043 24.8 6.2 53 108-165 27-81 (105)
281 PF06764 DUF1223: Protein of u 72.0 23 0.0005 27.6 7.1 76 102-184 1-96 (202)
282 COG2077 Tpx Peroxiredoxin [Pos 70.6 16 0.00035 27.2 5.6 69 98-167 43-145 (158)
283 cd03061 GST_N_CLIC GST_N famil 68.4 33 0.00072 23.0 6.8 65 108-184 19-84 (91)
284 KOG1364 Predicted ubiquitin re 67.7 6 0.00013 33.3 3.1 51 136-186 137-189 (356)
285 PF08806 Sep15_SelM: Sep15/Sel 66.1 12 0.00027 24.5 3.8 33 153-185 41-75 (78)
286 COG5429 Uncharacterized secret 65.9 15 0.00033 29.4 4.9 79 100-183 42-138 (261)
287 cd03021 DsbA_GSTK DsbA family, 65.3 5.2 0.00011 30.9 2.3 39 144-182 170-208 (209)
288 PF04551 GcpE: GcpE protein; 64.7 5.7 0.00012 33.6 2.5 75 111-185 271-358 (359)
289 COG3411 Ferredoxin [Energy pro 63.5 15 0.00033 23.1 3.7 29 154-186 17-45 (64)
290 COG0821 gcpE 1-hydroxy-2-methy 62.7 33 0.00071 29.0 6.5 75 111-185 264-350 (361)
291 cd03053 GST_N_Phi GST_N family 62.0 35 0.00077 21.1 6.0 69 103-183 2-74 (76)
292 PRK09481 sspA stringent starva 61.4 25 0.00055 26.9 5.5 61 98-164 6-67 (211)
293 PRK10387 glutaredoxin 2; Provi 60.9 49 0.0011 25.0 7.0 56 105-165 3-58 (210)
294 cd03049 GST_N_3 GST_N family, 60.5 34 0.00075 21.1 5.2 58 105-165 3-61 (73)
295 KOG0912 Thiol-disulfide isomer 57.4 31 0.00068 28.8 5.5 94 82-184 211-317 (375)
296 cd03022 DsbA_HCCA_Iso DsbA fam 56.3 13 0.00029 27.7 3.1 33 105-137 3-35 (192)
297 cd03054 GST_N_Metaxin GST_N fa 56.1 46 0.00099 20.5 5.2 58 109-184 14-71 (72)
298 cd07973 Spt4 Transcription elo 56.0 21 0.00045 24.5 3.6 68 106-183 18-92 (98)
299 PF09695 YtfJ_HI0045: Bacteria 55.5 86 0.0019 23.5 8.2 27 157-183 129-155 (160)
300 PF10411 DsbC_N: Disulfide bon 55.3 5.9 0.00013 24.2 0.8 38 41-78 13-51 (57)
301 TIGR00612 ispG_gcpE 1-hydroxy- 55.2 27 0.00058 29.5 4.8 69 111-183 262-342 (346)
302 PF00352 TBP: Transcription fa 55.1 16 0.00035 24.1 3.0 30 154-185 49-78 (86)
303 cd03038 GST_N_etherase_LigE GS 54.0 43 0.00094 21.4 4.9 66 108-184 13-81 (84)
304 TIGR02182 GRXB Glutaredoxin, G 52.7 76 0.0017 24.3 6.9 54 106-164 3-56 (209)
305 cd03062 TRX_Fd_Sucrase TRX-lik 52.3 27 0.00058 23.6 3.8 63 109-186 14-83 (97)
306 cd03033 ArsC_15kD Arsenate Red 51.6 16 0.00034 25.6 2.6 32 103-140 2-33 (113)
307 COG4604 CeuD ABC-type enteroch 51.0 33 0.00072 27.2 4.5 49 111-167 168-216 (252)
308 cd03058 GST_N_Tau GST_N family 49.2 61 0.0013 20.0 7.2 68 105-184 3-72 (74)
309 PF05988 DUF899: Bacterial pro 47.1 1.2E+02 0.0027 23.8 7.1 77 93-169 62-171 (211)
310 cd03030 GRX_SH3BGR Glutaredoxi 46.4 72 0.0016 21.4 5.1 56 107-164 5-69 (92)
311 PF11287 DUF3088: Protein of u 45.8 29 0.00064 24.4 3.2 49 111-160 24-75 (112)
312 cd03024 DsbA_FrnE DsbA family, 44.3 30 0.00066 26.0 3.4 25 105-129 3-27 (201)
313 PF07511 DUF1525: Protein of u 43.7 49 0.0011 23.4 4.1 29 145-177 75-103 (114)
314 cd03044 GST_N_EF1Bgamma GST_N 41.1 87 0.0019 19.4 5.6 56 105-165 3-61 (75)
315 COG2326 Uncharacterized conser 40.1 1.3E+02 0.0027 24.6 6.3 90 91-184 64-165 (270)
316 PF06491 Disulph_isomer: Disul 39.7 94 0.002 22.6 5.0 94 87-183 23-129 (136)
317 TIGR00014 arsC arsenate reduct 39.1 30 0.00064 24.1 2.4 33 104-142 2-34 (114)
318 TIGR02743 TraW type-F conjugat 38.3 44 0.00095 26.1 3.4 40 121-166 158-197 (202)
319 PF11072 DUF2859: Protein of u 36.9 42 0.00091 24.7 3.0 41 118-163 100-140 (142)
320 TIGR03757 conj_TIGR03757 integ 36.8 82 0.0018 22.2 4.3 34 145-182 76-109 (113)
321 cd03034 ArsC_ArsC Arsenate Red 36.7 34 0.00073 23.7 2.4 32 104-141 2-33 (112)
322 COG2101 SPT15 TATA-box binding 35.9 65 0.0014 24.6 3.9 28 156-185 55-82 (185)
323 PF00708 Acylphosphatase: Acyl 34.8 86 0.0019 20.6 4.1 39 143-185 24-62 (91)
324 PF05176 ATP-synt_10: ATP10 pr 34.4 1.7E+02 0.0036 23.6 6.3 41 143-183 204-247 (252)
325 PRK00394 transcription factor; 34.4 70 0.0015 24.4 4.0 29 155-185 140-168 (179)
326 cd00652 TBP_TLF TATA box bindi 34.1 70 0.0015 24.2 3.9 28 156-185 141-168 (174)
327 cd04518 TBP_archaea archaeal T 33.9 86 0.0019 23.8 4.4 28 156-185 140-167 (174)
328 PF10865 DUF2703: Domain of un 33.1 67 0.0015 22.9 3.4 54 109-167 13-73 (120)
329 PLN00062 TATA-box-binding prot 32.8 75 0.0016 24.2 3.9 28 156-185 140-167 (179)
330 PF07700 HNOB: Heme NO binding 32.3 98 0.0021 23.0 4.5 44 98-141 126-170 (171)
331 PRK13738 conjugal transfer pil 32.1 70 0.0015 25.1 3.7 41 122-167 157-198 (209)
332 cd00652 TBP_TLF TATA box bindi 31.6 81 0.0018 23.8 3.9 29 155-185 48-76 (174)
333 COG2093 DNA-directed RNA polym 31.1 21 0.00045 22.4 0.5 34 111-152 21-54 (64)
334 cd04516 TBP_eukaryotes eukaryo 30.9 84 0.0018 23.8 3.9 28 156-185 140-167 (174)
335 cd04517 TLF TBP-like factors ( 30.4 86 0.0019 23.7 3.9 28 156-185 141-168 (174)
336 cd04516 TBP_eukaryotes eukaryo 30.0 92 0.002 23.6 4.0 28 156-185 49-76 (174)
337 PRK00394 transcription factor; 29.8 89 0.0019 23.8 3.9 29 155-185 47-75 (179)
338 TIGR03765 ICE_PFL_4695 integra 29.2 55 0.0012 22.8 2.4 41 118-163 62-102 (105)
339 KOG1422 Intracellular Cl- chan 29.2 2.9E+02 0.0063 21.9 6.8 65 110-186 20-85 (221)
340 KOG0095 GTPase Rab30, small G 29.1 70 0.0015 24.0 3.0 44 88-131 66-111 (213)
341 COG1393 ArsC Arsenate reductas 29.1 60 0.0013 22.9 2.7 22 103-124 3-24 (117)
342 cd04517 TLF TBP-like factors ( 28.8 1E+02 0.0022 23.3 4.0 28 156-185 49-76 (174)
343 TIGR03521 GldG gliding-associa 28.8 4.4E+02 0.0094 23.8 8.7 74 80-155 29-116 (552)
344 TIGR03107 glu_aminopep glutamy 28.7 2.6E+02 0.0057 23.6 6.9 82 99-182 250-331 (350)
345 PLN02333 glucose-6-phosphate 1 28.7 1.6E+02 0.0034 27.1 5.7 43 98-140 115-159 (604)
346 PLN00062 TATA-box-binding prot 28.4 98 0.0021 23.6 3.9 29 155-185 48-76 (179)
347 cd04518 TBP_archaea archaeal T 27.6 1.1E+02 0.0023 23.3 3.9 29 155-185 48-76 (174)
348 cd02980 TRX_Fd_family Thioredo 27.5 1.3E+02 0.0028 18.7 3.8 30 152-185 48-77 (77)
349 COG5309 Exo-beta-1,3-glucanase 27.4 2.9E+02 0.0063 22.8 6.5 82 98-184 73-160 (305)
350 PF04214 DUF411: Protein of un 26.9 1.8E+02 0.0039 18.7 6.1 44 136-184 4-51 (70)
351 COG4752 Uncharacterized protei 26.7 1.2E+02 0.0026 22.7 3.9 28 86-113 120-147 (190)
352 cd03021 DsbA_GSTK DsbA family, 26.1 99 0.0022 23.6 3.7 36 102-137 2-37 (209)
353 cd03050 GST_N_Theta GST_N fami 26.0 1.7E+02 0.0036 18.0 6.0 55 104-164 2-60 (76)
354 PF04908 SH3BGR: SH3-binding, 25.8 71 0.0015 21.9 2.4 41 104-144 3-44 (99)
355 PRK10853 putative reductase; P 24.7 66 0.0014 22.6 2.2 31 103-139 2-32 (118)
356 PF03960 ArsC: ArsC family; I 24.3 83 0.0018 21.5 2.6 31 106-142 1-31 (110)
357 PF09936 Methyltrn_RNA_4: SAM- 24.0 1.3E+02 0.0028 23.2 3.8 25 86-110 119-143 (185)
358 PLN02817 glutathione dehydroge 23.1 3.6E+02 0.0079 21.7 6.5 46 110-159 72-118 (265)
359 TIGR01616 nitro_assoc nitrogen 23.1 99 0.0021 22.0 2.9 31 103-139 3-33 (126)
360 PRK15113 glutathione S-transfe 22.6 3.5E+02 0.0075 20.5 6.7 55 100-158 3-63 (214)
361 cd03048 GST_N_Ure2p_like GST_N 22.4 1.1E+02 0.0023 19.2 2.8 49 106-158 4-56 (81)
362 KOG0911 Glutaredoxin-related p 22.3 1.3E+02 0.0028 24.0 3.5 59 99-164 138-203 (227)
363 PRK14449 acylphosphatase; Prov 22.2 2.4E+02 0.0053 18.6 4.7 38 144-185 24-61 (90)
364 PRK10026 arsenate reductase; P 22.2 96 0.0021 22.7 2.7 31 103-139 4-34 (141)
365 TIGR00862 O-ClC intracellular 21.8 4.1E+02 0.0089 21.0 6.7 51 109-165 17-68 (236)
366 PRK14429 acylphosphatase; Prov 21.6 2.3E+02 0.0049 18.7 4.3 37 144-184 23-59 (90)
367 PF11238 DUF3039: Protein of u 21.6 39 0.00085 20.8 0.5 24 98-121 23-57 (58)
368 PF02938 GAD: GAD domain; Int 21.4 63 0.0014 21.6 1.5 44 140-184 29-72 (95)
369 PF02591 DUF164: Putative zinc 21.4 1.3E+02 0.0028 17.9 2.8 36 90-125 4-41 (56)
370 TIGR03759 conj_TIGR03759 integ 21.2 3.9E+02 0.0086 20.8 6.0 37 99-139 108-144 (200)
371 PF02630 SCO1-SenC: SCO1/SenC; 21.2 3.5E+02 0.0076 20.0 7.7 59 113-171 98-173 (174)
372 PF10726 DUF2518: Protein of f 21.1 2E+02 0.0043 21.2 4.1 30 156-185 72-103 (145)
373 PRK14420 acylphosphatase; Prov 20.6 2.6E+02 0.0057 18.4 4.5 38 144-185 23-60 (91)
374 TIGR02174 CXXU_selWTH selT/sel 20.2 79 0.0017 20.0 1.7 26 157-182 43-71 (72)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-30 Score=189.46 Aligned_cols=106 Identities=50% Similarity=0.956 Sum_probs=101.4
Q ss_pred ccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 029863 81 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIF 160 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~ 160 (186)
.....++..+|++.+.+++.||+|+|||+||+||+++.|.++++..+|.++++++++|+|++.+++.+|+|..+||+++|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 161 KNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 161 ~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
+||+++.++.|..+.+.|.++|+++|
T Consensus 123 knGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred ECCEEeeeecccCCHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 2
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.93 E-value=1.5e-25 Score=160.41 Aligned_cols=105 Identities=13% Similarity=0.189 Sum_probs=98.3
Q ss_pred ccccccChhHHHHHHHhCCCcEEEEEECCCCcc--cc--cchHHHHHHHHHh--cCceEEEEEeCCCChHHHHHcCCCcc
Q 029863 81 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGP--CR--MIHPIIDELSKQY--VGKLKCYKVNTDESPSIATRYGIRSI 154 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~--C~--~~~p~l~~l~~~~--~~~v~~~~v~~d~~~~l~~~~~i~~~ 154 (186)
..+..+|+++|++.+.+++.++|++||++||++ |+ +++|.+.++++++ .+++.++++|+|++++++++|||+++
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~i 88 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEE 88 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccc
Confidence 356778999999999999999999999999988 99 9999999999999 88899999999999999999999999
Q ss_pred cEEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 155 PTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 155 Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
||+++|+||+++. +.|..+.+.|.++|++++
T Consensus 89 PTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 89 DSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999887 999999999999999864
No 3
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.93 E-value=8.8e-25 Score=154.59 Aligned_cols=88 Identities=19% Similarity=0.346 Sum_probs=80.7
Q ss_pred hhHHHHHHHh-CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE
Q 029863 88 DATWQSLVLD-SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 166 (186)
Q Consensus 88 ~~~~~~~~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~ 166 (186)
.++|++.+.. .++++||+|||+||++|+++.|.++++++++++.+.|+++|+|++++++++|+|+++||+++|+||+++
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 4567776664 588999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEeCCCCH
Q 029863 167 DTVIGAVPK 175 (186)
Q Consensus 167 ~~~~G~~~~ 175 (186)
.+..|..+.
T Consensus 82 ~~~~G~~~~ 90 (114)
T cd02954 82 KIDLGTGNN 90 (114)
T ss_pred EEEcCCCCC
Confidence 999997654
No 4
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.92 E-value=2.3e-24 Score=149.28 Aligned_cols=103 Identities=37% Similarity=0.781 Sum_probs=97.4
Q ss_pred ccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 029863 83 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 162 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~ 162 (186)
+..+++++|++.+.++++++||+||++||++|+.+.|.++++++++.+++.++.+|++++++++++|+|+++||++++++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 35678999999877778999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCHHHHHHHHHhh
Q 029863 163 GEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 163 G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
|+...++.|..+.+.|.++|+++
T Consensus 81 g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999999999999874
No 5
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.92 E-value=1.2e-24 Score=154.57 Aligned_cols=101 Identities=9% Similarity=0.124 Sum_probs=92.8
Q ss_pred ccccccChhHHHHHH--HhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHH-HHcCCCcccEE
Q 029863 81 VEVPAVTDATWQSLV--LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIA-TRYGIRSIPTV 157 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~--~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~-~~~~i~~~Pt~ 157 (186)
..+.++++++|++.+ ..+++++||.|||+||++|+.++|.++++++++.+.+.+++||+|++.+++ ++|+|+++||+
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl 88 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI 88 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE
Confidence 456788999998863 577899999999999999999999999999999988999999999999999 58999999999
Q ss_pred EEEeCCeEEEEEeCCCCHHHHHHH
Q 029863 158 MIFKNGEKKDTVIGAVPKSTLTTS 181 (186)
Q Consensus 158 i~~~~G~~~~~~~G~~~~~~l~~~ 181 (186)
++|++|+...++.|..+.+.|..+
T Consensus 89 ~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 89 HLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred EEEECCccceEEeCCCCHHHHHhh
Confidence 999999988899999999998876
No 6
>PHA02278 thioredoxin-like protein
Probab=99.92 E-value=3.3e-24 Score=149.92 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=83.3
Q ss_pred hhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC----hHHHHHcCCCcccEEEEEeCC
Q 029863 88 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES----PSIATRYGIRSIPTVMIFKNG 163 (186)
Q Consensus 88 ~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~----~~l~~~~~i~~~Pt~i~~~~G 163 (186)
.++|.+.+ .+++++||+|||+||++|+.+.|.++++++++..++.++++|+|.+ ++++++|+|+++||+++|+||
T Consensus 4 ~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 4 LVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred HHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 45676654 5789999999999999999999999999988766688999999986 689999999999999999999
Q ss_pred eEEEEEeCCCCHHHHHHH
Q 029863 164 EKKDTVIGAVPKSTLTTS 181 (186)
Q Consensus 164 ~~~~~~~G~~~~~~l~~~ 181 (186)
+.+.++.|..+.+.|.++
T Consensus 83 ~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEEeCCCCHHHHHhh
Confidence 999999999999888764
No 7
>PRK09381 trxA thioredoxin; Provisional
Probab=99.92 E-value=5.7e-24 Score=149.78 Aligned_cols=106 Identities=44% Similarity=0.897 Sum_probs=99.1
Q ss_pred ccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 029863 81 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIF 160 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~ 160 (186)
..+.++++++|++.+...+++++|+||++||++|+.+.|.++++++++.+++.++.+|+++++.++++|+|+++||+++|
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 45678888999887777789999999999999999999999999999998899999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 161 KNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 161 ~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
++|+++.++.|..+.++|.++|++.|
T Consensus 83 ~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999999999999999998864
No 8
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-24 Score=173.86 Aligned_cols=104 Identities=45% Similarity=0.914 Sum_probs=98.8
Q ss_pred ccccChhHHHHHHHhC--CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 029863 83 VPAVTDATWQSLVLDS--GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIF 160 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~--~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~ 160 (186)
+.++|+.+|.+.+..+ .+||||+||+|||++|+.+.|.+++++.+|++++.+.+||+|+++.++.+|||+++||++.|
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEe
Confidence 8899999998877654 56999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 161 KNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 161 ~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
++|+.+..+.|..+++.+.+||++++
T Consensus 105 ~dGqpVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 105 KDGQPVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred eCCcCccccCCCCcHHHHHHHHHHhc
Confidence 99999999999999999999999874
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.91 E-value=2.2e-24 Score=149.92 Aligned_cols=99 Identities=23% Similarity=0.486 Sum_probs=91.6
Q ss_pred cccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEe
Q 029863 82 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 161 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~ 161 (186)
++.+++.++|++.+ ..+++++|+||++||++|+++.|.++++++++++.+.++.+|+|++++++++|+|+++||+++|+
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 45678999998866 56799999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCHHHHHHH
Q 029863 162 NGEKKDTVIGAVPKSTLTTS 181 (186)
Q Consensus 162 ~G~~~~~~~G~~~~~~l~~~ 181 (186)
+|+.+.++.|..+.+.|.+|
T Consensus 81 ~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 81 SGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCCcccCCCCCCHHHHHhh
Confidence 99988899999999988775
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.91 E-value=2.9e-24 Score=150.00 Aligned_cols=100 Identities=29% Similarity=0.577 Sum_probs=92.4
Q ss_pred ccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 029863 83 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 162 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~ 162 (186)
+.+++.++|++.+..++++++|+||++||++|+.+.|.++++++++.+.+.++.+|++++++++++|+|+++||+++|++
T Consensus 3 v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 82 (104)
T cd03004 3 VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPG 82 (104)
T ss_pred ceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcC
Confidence 45788999999888888899999999999999999999999999998889999999999999999999999999999998
Q ss_pred C-eEEEEEeCCCC-HHHHHHHH
Q 029863 163 G-EKKDTVIGAVP-KSTLTTSI 182 (186)
Q Consensus 163 G-~~~~~~~G~~~-~~~l~~~l 182 (186)
| +.+.++.|..+ .++|.+||
T Consensus 83 g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 83 NASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCceEccCCCCCHHHHHhhC
Confidence 8 88889999887 88888764
No 11
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.91 E-value=1e-23 Score=149.45 Aligned_cols=101 Identities=19% Similarity=0.351 Sum_probs=91.9
Q ss_pred ccChhHHHHHHHh--CCCcEEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEEe
Q 029863 85 AVTDATWQSLVLD--SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVMIFK 161 (186)
Q Consensus 85 ~l~~~~~~~~~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~ 161 (186)
.++.++|.+.+.. .+++++|+||++||++|+++.|.++++++++.+ ++.++.+|+|.++.++++|+|+++||+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 4577888765543 689999999999999999999999999999976 4999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 162 NGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 162 ~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
+|+.+.++.|..+.+.|.++|+++
T Consensus 88 ~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 88 NGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred CCEEEEEecCCCCHHHHHHHHhcC
Confidence 999999999999999999999874
No 12
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.91 E-value=1.4e-23 Score=144.32 Aligned_cols=94 Identities=34% Similarity=0.740 Sum_probs=86.8
Q ss_pred HHHHHHHhC-CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEE
Q 029863 90 TWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDT 168 (186)
Q Consensus 90 ~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~ 168 (186)
+|++.+.+. ++++||+||++||++|+++.|.++++++.+.+.+.++.+|++++++++++|+|+++||+++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 466666545 8899999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHH
Q 029863 169 VIGAVPKSTLTTSIE 183 (186)
Q Consensus 169 ~~G~~~~~~l~~~l~ 183 (186)
+.|..+.++|.++|+
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 999999999998874
No 13
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.90 E-value=3.4e-23 Score=144.84 Aligned_cols=96 Identities=24% Similarity=0.339 Sum_probs=83.4
Q ss_pred ChhHHHHHHHhC-CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh---HHHHHcCCCcccEEEEEeC
Q 029863 87 TDATWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP---SIATRYGIRSIPTVMIFKN 162 (186)
Q Consensus 87 ~~~~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~---~l~~~~~i~~~Pt~i~~~~ 162 (186)
+.++|++.+... ++++||+||++||++|+.+.|.++++++++ +++.++.+|+|++. +++++|+|+++||+++|+|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 456787777644 899999999999999999999999999999 56999999999874 8999999999999999999
Q ss_pred CeEEEEEeCCCCHHHHHHHHHh
Q 029863 163 GEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 163 G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
|+++.++.|.. +++|.+.+.+
T Consensus 81 G~~v~~~~G~~-~~~l~~~~~~ 101 (103)
T cd02985 81 GEKIHEEEGIG-PDELIGDVLY 101 (103)
T ss_pred CeEEEEEeCCC-HHHHHHHHHh
Confidence 99999999965 4556665543
No 14
>PRK10996 thioredoxin 2; Provisional
Probab=99.90 E-value=4.7e-23 Score=151.58 Aligned_cols=106 Identities=43% Similarity=0.840 Sum_probs=97.3
Q ss_pred cccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 029863 80 AVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMI 159 (186)
Q Consensus 80 ~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~ 159 (186)
...+.++++++|++. ..++++++|+||++||++|+++.|.++++++++.+++.++.+|++++++++++|+|+++||+++
T Consensus 34 ~~~~i~~~~~~~~~~-i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii 112 (139)
T PRK10996 34 DGEVINATGETLDKL-LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMI 112 (139)
T ss_pred CCCCEEcCHHHHHHH-HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence 344556788899875 4568999999999999999999999999999998889999999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 160 FKNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 160 ~~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
|++|+++.++.|..+.+.|+++|++++
T Consensus 113 ~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 113 FKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 999999999999999999999999875
No 15
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.5e-23 Score=145.13 Aligned_cols=89 Identities=34% Similarity=0.731 Sum_probs=81.4
Q ss_pred HHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCC
Q 029863 95 VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 174 (186)
Q Consensus 95 ~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~ 174 (186)
...++++++|+|||+|||+|+++.|.+.+|+.+|++ +.|+++|+|+..+++++|+|+.+||++++++|+.+.++.|...
T Consensus 17 ~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 17 AEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK 95 (106)
T ss_pred hhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH
Confidence 344479999999999999999999999999999999 9999999999999999999999999999999999999999754
Q ss_pred HHHHHHHHHhh
Q 029863 175 KSTLTTSIEKF 185 (186)
Q Consensus 175 ~~~l~~~l~~~ 185 (186)
. ++++.|.++
T Consensus 96 ~-~l~~~i~~~ 105 (106)
T KOG0907|consen 96 A-ELEKKIAKH 105 (106)
T ss_pred H-HHHHHHHhc
Confidence 4 788877764
No 16
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.90 E-value=4.1e-23 Score=145.20 Aligned_cols=100 Identities=17% Similarity=0.314 Sum_probs=92.3
Q ss_pred cccccccChhHHHHHHHhCCCcEEEEEECCC--CcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 029863 80 AVEVPAVTDATWQSLVLDSGSPVLVEFWAPW--CGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTV 157 (186)
Q Consensus 80 ~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~w--C~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~ 157 (186)
....+.++..+|++.+ +.+.++||.||++| ||+|+.+.|.+++++++|++.+.++++|+|++++++.+|+|+++||+
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTl 87 (111)
T cd02965 9 RHGWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPAL 87 (111)
T ss_pred hcCCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEE
Confidence 3556788999998765 67899999999997 99999999999999999999999999999999999999999999999
Q ss_pred EEEeCCeEEEEEeCCCCHHHHHH
Q 029863 158 MIFKNGEKKDTVIGAVPKSTLTT 180 (186)
Q Consensus 158 i~~~~G~~~~~~~G~~~~~~l~~ 180 (186)
++|+||+.+.++.|..+.+++.+
T Consensus 88 i~fkdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 88 LFFRDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred EEEECCEEEEEEeCccCHHHHhh
Confidence 99999999999999999988753
No 17
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.89 E-value=1e-22 Score=149.28 Aligned_cols=99 Identities=20% Similarity=0.316 Sum_probs=88.7
Q ss_pred ChhHHHHHHH-hCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE-EEeCCe
Q 029863 87 TDATWQSLVL-DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVM-IFKNGE 164 (186)
Q Consensus 87 ~~~~~~~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i-~~~~G~ 164 (186)
+..+|++.+. +.+++|||+|||+||++|+++.|.|+++++++.+.+.|+++|+|++++++++|+|++.|+++ +|++|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 5678888776 45789999999999999999999999999999988999999999999999999999887655 889999
Q ss_pred -EEEEEeC--------CCCHHHHHHHHHhh
Q 029863 165 -KKDTVIG--------AVPKSTLTTSIEKF 185 (186)
Q Consensus 165 -~~~~~~G--------~~~~~~l~~~l~~~ 185 (186)
.+.+..| ..+.++|.+.++.+
T Consensus 90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 90 IMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred EEEEEecccccccccccCCHHHHHHHHHHH
Confidence 8889999 67889999888765
No 18
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.89 E-value=2.1e-22 Score=140.55 Aligned_cols=96 Identities=23% Similarity=0.562 Sum_probs=86.7
Q ss_pred ChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCc-eEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeE
Q 029863 87 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 87 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~ 165 (186)
+.++|+.++ .++++++|+||++||++|+.+.|.++++++++++. +.++.+|.| +++++++|+|+++||+++|++|++
T Consensus 6 ~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 6 NQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred CHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE
Confidence 677887754 57899999999999999999999999999999854 889999999 789999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHhh
Q 029863 166 KDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 166 ~~~~~G~~~~~~l~~~l~~~ 185 (186)
+.+..|. +.+.+.++|+++
T Consensus 84 ~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 84 VAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred EEEEecC-ChHHHHHHHhhC
Confidence 9999996 778899988864
No 19
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.89 E-value=1.5e-22 Score=142.21 Aligned_cols=101 Identities=25% Similarity=0.558 Sum_probs=92.0
Q ss_pred ccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCCcccEEEEE
Q 029863 83 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE--SPSIATRYGIRSIPTVMIF 160 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~--~~~l~~~~~i~~~Pt~i~~ 160 (186)
+.++++++|++.+...+++++|+||++||++|+.+.|.++++++.+.+.+.++.+|+++ +++++++|+|+++||+++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 45788999999888889999999999999999999999999999998889999999998 8899999999999999999
Q ss_pred eCCe-----EEEEEeCCCCHHHHHHHHH
Q 029863 161 KNGE-----KKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 161 ~~G~-----~~~~~~G~~~~~~l~~~l~ 183 (186)
++|+ ....+.|..+.++|.+||.
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHhC
Confidence 9886 4567889999999998873
No 20
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.89 E-value=1.6e-22 Score=142.31 Aligned_cols=100 Identities=33% Similarity=0.584 Sum_probs=88.0
Q ss_pred cccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhc------CceEEEEEeCCCChHHHHHcCCCccc
Q 029863 82 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYV------GKLKCYKVNTDESPSIATRYGIRSIP 155 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~------~~v~~~~v~~d~~~~l~~~~~i~~~P 155 (186)
.+.++++++|++.+ ..+++++|+||++||++|+++.|.++++++.+. +.+.++.+|+|++++++++|+|+++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 35678899999854 678899999999999999999999999998763 24899999999999999999999999
Q ss_pred EEEEEeCCe-EEEEEeCCCCHHHHHHHH
Q 029863 156 TVMIFKNGE-KKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 156 t~i~~~~G~-~~~~~~G~~~~~~l~~~l 182 (186)
|+++|++|+ ...++.|..+.++|.+||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999998 457888999999888774
No 21
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.89 E-value=2.3e-22 Score=139.61 Aligned_cols=98 Identities=28% Similarity=0.587 Sum_probs=87.6
Q ss_pred ccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEEe
Q 029863 83 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVMIFK 161 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~ 161 (186)
+.++++++|++++ .++ ++|+||++||++|+++.|.++++++.+.+ ++.++.+|+++++.++++|+|+++||+++++
T Consensus 3 v~~l~~~~f~~~~--~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 3 VVELTDSNWTLVL--EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred eEEcChhhHHHHh--CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 5678899998754 344 78999999999999999999999998765 5999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHh
Q 029863 162 NGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 162 ~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
+|+. .++.|..+.++|..+|++
T Consensus 80 ~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 80 DGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCCE-EEecCCCCHHHHHHHHhC
Confidence 9985 789999999999999875
No 22
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.88 E-value=3.6e-22 Score=138.42 Aligned_cols=98 Identities=29% Similarity=0.652 Sum_probs=88.8
Q ss_pred ccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 029863 83 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESPSIATRYGIRSIPTVMI 159 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~ 159 (186)
+.++++++|++.+. .+ +++|+||++||++|+.+.|.++++++++.+ ++.++.+|+++++.++++|+|.++||+++
T Consensus 2 ~~~l~~~~f~~~~~-~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIA-EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhh-cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 45788999988764 33 599999999999999999999999999976 69999999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCHHHHHHHH
Q 029863 160 FKNGEKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 160 ~~~G~~~~~~~G~~~~~~l~~~l 182 (186)
|++|+++.++.|..+.++|.++|
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHHhhC
Confidence 99999988999999999888764
No 23
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.88 E-value=8e-22 Score=135.81 Aligned_cols=101 Identities=55% Similarity=1.082 Sum_probs=93.2
Q ss_pred cChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeE
Q 029863 86 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 86 l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~ 165 (186)
++.+++.+.+...+++++|+||++||++|+.+.+.++++++++.+++.++.+|+++++.++++|+|.++|+++++++|+.
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 35678888777678899999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHhhC
Q 029863 166 KDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 166 ~~~~~G~~~~~~l~~~l~~~l 186 (186)
+.++.|..+.+.+.++|++.+
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred eeeecCCCCHHHHHHHHHhhC
Confidence 999999999999999998764
No 24
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.88 E-value=2.1e-22 Score=140.15 Aligned_cols=85 Identities=21% Similarity=0.466 Sum_probs=78.7
Q ss_pred HhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCC-CChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCC
Q 029863 96 LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD-ESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 174 (186)
Q Consensus 96 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d-~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~ 174 (186)
..+|++++|+||++||++|+++.|.++++++++++ +.++.+|.+ ++++++++|+|+++||+++|++| .+.++.|..+
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~ 92 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRT 92 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCC
Confidence 35699999999999999999999999999999975 889999998 78999999999999999999999 7789999999
Q ss_pred HHHHHHHH
Q 029863 175 KSTLTTSI 182 (186)
Q Consensus 175 ~~~l~~~l 182 (186)
.+.|.+||
T Consensus 93 ~~~l~~f~ 100 (100)
T cd02999 93 LDSLAAFY 100 (100)
T ss_pred HHHHHhhC
Confidence 99988874
No 25
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.88 E-value=7.7e-22 Score=155.35 Aligned_cols=106 Identities=25% Similarity=0.506 Sum_probs=96.7
Q ss_pred cccccccChhHHHHHHHhC----CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCccc
Q 029863 80 AVEVPAVTDATWQSLVLDS----GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIP 155 (186)
Q Consensus 80 ~~~v~~l~~~~~~~~~~~~----~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~P 155 (186)
...+.++++++|++.+..+ +++++|+||++||++|++++|.++++++++++.+.+..+|++++++++++|+|+++|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 3467889999999877543 589999999999999999999999999999988999999999999999999999999
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 156 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 156 t~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
|+++|++|+.+....|..+.++|.+++++.
T Consensus 109 Tl~~f~~G~~v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred EEEEEECCEEEEeeCCCCCHHHHHHHHHHH
Confidence 999999999988888989999999998764
No 26
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.87 E-value=8.5e-22 Score=136.73 Aligned_cols=100 Identities=32% Similarity=0.626 Sum_probs=91.2
Q ss_pred ccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 029863 83 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 162 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~ 162 (186)
+.+++++++++.+...+++++|+||++||++|+++.|.+.++++++.+++.++.+|++++++++++|+|+++|++++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 56788999998877778889999999999999999999999999998889999999999999999999999999999998
Q ss_pred C-eEEEEEeCCCCHHHHHHHH
Q 029863 163 G-EKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 163 G-~~~~~~~G~~~~~~l~~~l 182 (186)
| +....+.|..+.+.|.+|+
T Consensus 82 ~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCcceeecCCCCCHHHHHHHh
Confidence 8 4556788999999998875
No 27
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.87 E-value=2e-21 Score=137.97 Aligned_cols=90 Identities=27% Similarity=0.561 Sum_probs=82.0
Q ss_pred ccccccChhHHHHHHHhC--CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 029863 81 VEVPAVTDATWQSLVLDS--GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVM 158 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~--~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i 158 (186)
..+.+++.++|.+.+... +++++|+||++||++|+.+.|.++++++++++ +.|+++|++++ +++++|+|+++||++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 345677889998887665 48999999999999999999999999999975 89999999999 999999999999999
Q ss_pred EEeCCeEEEEEeCC
Q 029863 159 IFKNGEKKDTVIGA 172 (186)
Q Consensus 159 ~~~~G~~~~~~~G~ 172 (186)
+|++|+.+.++.|.
T Consensus 82 ~f~~G~~v~~~~G~ 95 (113)
T cd02957 82 VYKNGELIDNIVGF 95 (113)
T ss_pred EEECCEEEEEEecH
Confidence 99999999999984
No 28
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.87 E-value=2e-21 Score=134.30 Aligned_cols=100 Identities=30% Similarity=0.626 Sum_probs=91.2
Q ss_pred cChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC
Q 029863 86 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG--KLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 163 (186)
Q Consensus 86 l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G 163 (186)
|++++|++.+. ++++++|+||++||++|+.+.+.++++++.+.+ ++.++.+|++++++++++|+|+++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 46788888654 799999999999999999999999999999987 699999999999999999999999999999988
Q ss_pred eEEEEEeCCCCHHHHHHHHHhhC
Q 029863 164 EKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 164 ~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
+...++.|..+.++|..+|++++
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhcC
Confidence 76778999999999999998864
No 29
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.87 E-value=3.2e-21 Score=133.22 Aligned_cols=93 Identities=32% Similarity=0.567 Sum_probs=86.6
Q ss_pred HHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEe
Q 029863 91 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVI 170 (186)
Q Consensus 91 ~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~ 170 (186)
+++.+.+.+++++++||++||+.|+.+.|.++++++++.+++.++.+|.|++++++++|+|.++|+++++++|+++.++.
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~ 84 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEIS 84 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEe
Confidence 45556778999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH
Q 029863 171 GAVPKSTLTTSIE 183 (186)
Q Consensus 171 G~~~~~~l~~~l~ 183 (186)
|..+.++|.++|+
T Consensus 85 g~~~~~~~~~~l~ 97 (97)
T cd02949 85 GVKMKSEYREFIE 97 (97)
T ss_pred CCccHHHHHHhhC
Confidence 9999999988874
No 30
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.86 E-value=2.3e-21 Score=143.09 Aligned_cols=97 Identities=27% Similarity=0.607 Sum_probs=86.1
Q ss_pred hHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC--hHHHHHcCCCcccEEEEEe-CCeE
Q 029863 89 ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES--PSIATRYGIRSIPTVMIFK-NGEK 165 (186)
Q Consensus 89 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~--~~l~~~~~i~~~Pt~i~~~-~G~~ 165 (186)
.+|+. ....++++||+||++||++|+.+.|.+.++++++.+++.|+.+|+|.. .+++++|+|+++||+++|+ +|++
T Consensus 11 ~~~~~-a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 11 TPPEV-ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CCHHH-HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 34544 456799999999999999999999999999999988889999998865 5899999999999999995 8999
Q ss_pred EEEEeCCCCHHHHHHHHHhhC
Q 029863 166 KDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 166 ~~~~~G~~~~~~l~~~l~~~l 186 (186)
+.++.|..+.++|.++|++++
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 999999999999999998763
No 31
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.86 E-value=6e-21 Score=134.31 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=82.2
Q ss_pred hHHHHHHHhC-CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEE
Q 029863 89 ATWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 167 (186)
Q Consensus 89 ~~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~ 167 (186)
++|++.+... +++|||.||++||++|+.+.|.++++++++++.+.|+++|+|+.++++++|+|+..||+++|+||+.+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 4676666544 899999999999999999999999999999877999999999999999999999999999999998776
Q ss_pred EEeCCC----------CHHHHHHHHHh
Q 029863 168 TVIGAV----------PKSTLTTSIEK 184 (186)
Q Consensus 168 ~~~G~~----------~~~~l~~~l~~ 184 (186)
.-.|.. +++++.+.++.
T Consensus 83 ~d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 83 VDYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred EecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 544532 35777777664
No 32
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.86 E-value=7.7e-21 Score=135.09 Aligned_cols=88 Identities=28% Similarity=0.557 Sum_probs=78.8
Q ss_pred ccccCh-hHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEe
Q 029863 83 VPAVTD-ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 161 (186)
Q Consensus 83 v~~l~~-~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~ 161 (186)
+..+++ ++|.+.+ .++++++|+||++||++|+.+.|.++++++++++ ++++.+|.+++++++++|+|+++||+++|+
T Consensus 6 v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk 83 (113)
T cd02989 6 YREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILFK 83 (113)
T ss_pred eEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEEE
Confidence 344554 7887765 4568999999999999999999999999999976 999999999999999999999999999999
Q ss_pred CCeEEEEEeCC
Q 029863 162 NGEKKDTVIGA 172 (186)
Q Consensus 162 ~G~~~~~~~G~ 172 (186)
+|+++.++.|.
T Consensus 84 ~G~~v~~~~g~ 94 (113)
T cd02989 84 NGKTVDRIVGF 94 (113)
T ss_pred CCEEEEEEECc
Confidence 99999988775
No 33
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.86 E-value=4.5e-21 Score=133.18 Aligned_cols=99 Identities=24% Similarity=0.520 Sum_probs=88.3
Q ss_pred ccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhc--CceEEEEEeCCC--ChHHHHHcCCCcccEEE
Q 029863 83 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYV--GKLKCYKVNTDE--SPSIATRYGIRSIPTVM 158 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~v~~d~--~~~l~~~~~i~~~Pt~i 158 (186)
+..+++.+|++.+ ..+++++|+||++||++|+.+.|.++++++.+. +.+.++.+|+++ ++.++++|+|+++||++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 4567788898765 456799999999999999999999999999987 568899999998 89999999999999999
Q ss_pred EEeCCeEEEEEeCCCCHHHHHHHH
Q 029863 159 IFKNGEKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 159 ~~~~G~~~~~~~G~~~~~~l~~~l 182 (186)
+|++|+.+.++.|..+.+.+.+||
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999899999999999888764
No 34
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.86 E-value=6.6e-21 Score=141.81 Aligned_cols=91 Identities=24% Similarity=0.465 Sum_probs=83.0
Q ss_pred ccccccChhHHHHHHHhC-CCcEEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCc-----
Q 029863 81 VEVPAVTDATWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRS----- 153 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~~~~l~~~~~i~~----- 153 (186)
..+.+++.++|++.+... +++++|+||++||++|+++.|.++++++++.+ ++.++.+|+|++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 567788899998876544 67999999999999999999999999999975 59999999999999999999988
Q ss_pred -ccEEEEEeCCeEEEEEeC
Q 029863 154 -IPTVMIFKNGEKKDTVIG 171 (186)
Q Consensus 154 -~Pt~i~~~~G~~~~~~~G 171 (186)
+||+++|++|+++.++.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 999999999999999997
No 35
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.85 E-value=1.3e-20 Score=129.64 Aligned_cols=94 Identities=27% Similarity=0.672 Sum_probs=83.2
Q ss_pred hhHHHHHHHhC-CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE
Q 029863 88 DATWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 166 (186)
Q Consensus 88 ~~~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~ 166 (186)
.++|++.+... +++++|+||++||++|+.+.+.++++++++..++.++.+|.+++++++++|+|+++||+++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 46777766655 69999999999999999999999999999766799999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHH
Q 029863 167 DTVIGAVPKSTLTTSI 182 (186)
Q Consensus 167 ~~~~G~~~~~~l~~~l 182 (186)
.++.|. ..++|.+.|
T Consensus 82 ~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEeCC-CHHHHHHhh
Confidence 999996 456666654
No 36
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.85 E-value=5.8e-21 Score=132.64 Aligned_cols=100 Identities=31% Similarity=0.624 Sum_probs=89.0
Q ss_pred ccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhc--CceEEEEEeCCC-ChHHHHHcCCCcccEEEE
Q 029863 83 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYV--GKLKCYKVNTDE-SPSIATRYGIRSIPTVMI 159 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~v~~d~-~~~l~~~~~i~~~Pt~i~ 159 (186)
+.+++++++++.+...+++++|.||++||++|+.+.|.++++++.+. +++.++.+|+++ +++++++|+|+++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 45678889988777678899999999999999999999999999987 459999999999 999999999999999999
Q ss_pred EeCC-eEEEEEeCCCCHHHHHHHH
Q 029863 160 FKNG-EKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 160 ~~~G-~~~~~~~G~~~~~~l~~~l 182 (186)
|++| +....+.|..+.++|.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 9877 5666888989999888774
No 37
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.84 E-value=8.3e-21 Score=131.75 Aligned_cols=99 Identities=30% Similarity=0.637 Sum_probs=88.7
Q ss_pred ccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 029863 83 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG--KLKCYKVNTDESPSIATRYGIRSIPTVMIF 160 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~ 160 (186)
+.++++++|++.+...+++++|+||++||++|+.+.|.++++++.+.+ ++.++.+|++++ +++..+++.++||+++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 467889999988877789999999999999999999999999999877 599999999987 68899999999999999
Q ss_pred eCCe--EEEEEeCCCCHHHHHHHH
Q 029863 161 KNGE--KKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 161 ~~G~--~~~~~~G~~~~~~l~~~l 182 (186)
++|+ ...++.|..+.+.|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 9887 566889998988888775
No 38
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.84 E-value=1e-20 Score=132.11 Aligned_cols=94 Identities=19% Similarity=0.438 Sum_probs=82.6
Q ss_pred hHHHHHHHhCCCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEe
Q 029863 89 ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDE----SPSIATRYGIRSIPTVMIFK 161 (186)
Q Consensus 89 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v~~d~----~~~l~~~~~i~~~Pt~i~~~ 161 (186)
+.|.+ ...++++++|+||++||++|+++.+.+ .++++.+.+++.++.+|+++ .++++++|+|+++||+++|+
T Consensus 2 ~~~~~-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQ-ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHH-HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 35555 346789999999999999999999988 68888887789999999987 57899999999999999998
Q ss_pred --CCeEEEEEeCCCCHHHHHHHHH
Q 029863 162 --NGEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 162 --~G~~~~~~~G~~~~~~l~~~l~ 183 (186)
+|+++.++.|..+.++|.++|+
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHhC
Confidence 7999999999999999998874
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.83 E-value=4.5e-20 Score=128.93 Aligned_cols=94 Identities=23% Similarity=0.557 Sum_probs=82.2
Q ss_pred hHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeE
Q 029863 89 ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 89 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~ 165 (186)
++|++. .++++++|.||++||++|+++.|.++++++++.+ .+.++.+|+++.++++++|+|.++||+++|++|.
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~- 83 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL- 83 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-
Confidence 566653 3467999999999999999999999999999843 4899999999999999999999999999998774
Q ss_pred EEEEeCCCCHHHHHHHHHhh
Q 029863 166 KDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 166 ~~~~~G~~~~~~l~~~l~~~ 185 (186)
..++.|..+.++|.+++++.
T Consensus 84 ~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ceeecCCCCHHHHHHHHHhh
Confidence 45789999999999999874
No 40
>PTZ00051 thioredoxin; Provisional
Probab=99.83 E-value=5.4e-20 Score=126.80 Aligned_cols=90 Identities=40% Similarity=0.764 Sum_probs=79.9
Q ss_pred ChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE
Q 029863 87 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 166 (186)
Q Consensus 87 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~ 166 (186)
+.++|.+ +.+.+++++++||++||++|+.+.+.++++++++.+ +.++.+|++++.+++++|+|+++||++++++|+++
T Consensus 7 ~~~~~~~-~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 7 SQAEFES-TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred CHHHHHH-HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEE
Confidence 3456666 456789999999999999999999999999998865 99999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHH
Q 029863 167 DTVIGAVPKSTLT 179 (186)
Q Consensus 167 ~~~~G~~~~~~l~ 179 (186)
.++.|. ..++|.
T Consensus 85 ~~~~G~-~~~~~~ 96 (98)
T PTZ00051 85 DTLLGA-NDEALK 96 (98)
T ss_pred EEEeCC-CHHHhh
Confidence 999996 555554
No 41
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.83 E-value=6.6e-20 Score=139.71 Aligned_cols=103 Identities=15% Similarity=0.331 Sum_probs=89.0
Q ss_pred cccccccCh-hHHHHHHHhCC--CcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccE
Q 029863 80 AVEVPAVTD-ATWQSLVLDSG--SPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPT 156 (186)
Q Consensus 80 ~~~v~~l~~-~~~~~~~~~~~--k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt 156 (186)
-..+.+++. ++|.+.+...+ ++|||+||++||++|+.+.|.|++|+++|+. ++|++||+++. .++.+|+|+++||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccch-hhHHhCCCCCCCE
Confidence 456677777 89988776554 4999999999999999999999999999975 99999999988 9999999999999
Q ss_pred EEEEeCCeEEEEEeCCC-------CHHHHHHHHHh
Q 029863 157 VMIFKNGEKKDTVIGAV-------PKSTLTTSIEK 184 (186)
Q Consensus 157 ~i~~~~G~~~~~~~G~~-------~~~~l~~~l~~ 184 (186)
+++|++|+.+.++.|.. +.+.|+.+|.+
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99999999999888753 45677777654
No 42
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.83 E-value=6.3e-20 Score=130.39 Aligned_cols=89 Identities=24% Similarity=0.385 Sum_probs=80.1
Q ss_pred hCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEE--EEeCCCC
Q 029863 97 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD--TVIGAVP 174 (186)
Q Consensus 97 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~--~~~G~~~ 174 (186)
..++.++|+||++||++|+.+.|.++++++.+ +++.++.+|.|++++++++|+|+++||++++++|+... ++.|..+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~ 98 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPA 98 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCc
Confidence 35677899999999999999999999999887 66999999999999999999999999999999876544 7889999
Q ss_pred HHHHHHHHHhhC
Q 029863 175 KSTLTTSIEKFL 186 (186)
Q Consensus 175 ~~~l~~~l~~~l 186 (186)
.+++.++|+.++
T Consensus 99 ~~el~~~i~~i~ 110 (113)
T cd02975 99 GYEFASLIEDIV 110 (113)
T ss_pred hHHHHHHHHHHH
Confidence 999999998763
No 43
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.83 E-value=7.5e-20 Score=129.02 Aligned_cols=101 Identities=23% Similarity=0.434 Sum_probs=85.6
Q ss_pred cccccChhHHHHHHH--hCCCcEEEEEECCCCcccccchHHHHHHHHHhcCc-eEEEEEeCCC-ChHHHH-HcCCCcccE
Q 029863 82 EVPAVTDATWQSLVL--DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDE-SPSIAT-RYGIRSIPT 156 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~d~-~~~l~~-~~~i~~~Pt 156 (186)
.+.+++.++|+.++. .++++++|.||++||++|+++.|.+.++++.+.+. +.++.+|+|. +..+++ .|+|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 467788899988774 45899999999999999999999999999999874 9999999997 577887 599999999
Q ss_pred EEEEeCC-eEEEEEeCC-CCHHHHHHHH
Q 029863 157 VMIFKNG-EKKDTVIGA-VPKSTLTTSI 182 (186)
Q Consensus 157 ~i~~~~G-~~~~~~~G~-~~~~~l~~~l 182 (186)
+++|++| .....+.|. .+.+.|..||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999765 456678885 6888887764
No 44
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.82 E-value=3e-19 Score=128.56 Aligned_cols=100 Identities=15% Similarity=0.238 Sum_probs=82.3
Q ss_pred ccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh-----------HHHHHc
Q 029863 81 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-----------SIATRY 149 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~-----------~l~~~~ 149 (186)
.....++.+++.+.+ .+++.++|+||++|||+|+++.|.|+++.++ .++.++.+|+|.++ ++.++|
T Consensus 6 ~~~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 6 KGLEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ccceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 344567888887754 5688899999999999999999999999988 45789999998543 556676
Q ss_pred C----CCcccEEEEEeCCeEEEEEeC-CCCHHHHHHHHH
Q 029863 150 G----IRSIPTVMIFKNGEKKDTVIG-AVPKSTLTTSIE 183 (186)
Q Consensus 150 ~----i~~~Pt~i~~~~G~~~~~~~G-~~~~~~l~~~l~ 183 (186)
+ |.++||+++|+||+++.+..| ..+.++|.+++.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 5 556999999999999999999 567899988763
No 45
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.81 E-value=1.4e-19 Score=123.90 Aligned_cols=97 Identities=34% Similarity=0.677 Sum_probs=85.8
Q ss_pred ccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHh--cCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 029863 85 AVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQY--VGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 162 (186)
Q Consensus 85 ~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~ 162 (186)
++++++|.+.+. ++++++|.||++||++|+.+.+.+.++++.+ .+.+.++.+|+++++.++++|+|+++||++++++
T Consensus 2 ~l~~~~~~~~i~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVK-DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHh-CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 467888987554 4559999999999999999999999999999 5779999999999999999999999999999987
Q ss_pred C-eEEEEEeCCCCHHHHHHHH
Q 029863 163 G-EKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 163 G-~~~~~~~G~~~~~~l~~~l 182 (186)
| +...++.|..+.+++.+++
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 7 7777899988888887764
No 46
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.81 E-value=3.5e-19 Score=128.34 Aligned_cols=95 Identities=20% Similarity=0.357 Sum_probs=81.1
Q ss_pred HHHHHHHhCC-CcEEEEEECCCCcccccchHHHH---HHHHHhcCceEEEEEeCCCC-------------hHHHHHcCCC
Q 029863 90 TWQSLVLDSG-SPVLVEFWAPWCGPCRMIHPIID---ELSKQYVGKLKCYKVNTDES-------------PSIATRYGIR 152 (186)
Q Consensus 90 ~~~~~~~~~~-k~vvv~F~a~wC~~C~~~~p~l~---~l~~~~~~~v~~~~v~~d~~-------------~~l~~~~~i~ 152 (186)
.+++ ..+++ ++++|+||++||++|+.+++.+. ++.+.+.+++.++.+|.|++ .+++++|+|+
T Consensus 5 ~~~~-a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 5 DLAE-AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHH-HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 4444 45567 99999999999999999999884 66667767789999999865 6899999999
Q ss_pred cccEEEEEeC--CeEEEEEeCCCCHHHHHHHHHhh
Q 029863 153 SIPTVMIFKN--GEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 153 ~~Pt~i~~~~--G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
++||++++++ |+++.++.|..+.+.+.++|+.+
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 9999988874 69999999999999999998875
No 47
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.6e-19 Score=139.78 Aligned_cols=97 Identities=37% Similarity=0.737 Sum_probs=86.7
Q ss_pred ChhHHHHHHH-hCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeE
Q 029863 87 TDATWQSLVL-DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 87 ~~~~~~~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~ 165 (186)
++..|+.... ..+|.|+|+|+|.||+||+++.|.+..++.+|++ ..|++||+|+.+..+..+||...||+++|+||..
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k 86 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK 86 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence 4566765443 4578999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHhh
Q 029863 166 KDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 166 ~~~~~G~~~~~~l~~~l~~~ 185 (186)
++++.|+ ++..|+..+.++
T Consensus 87 id~~qGA-d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 87 IDQIQGA-DASGLEEKVAKY 105 (288)
T ss_pred eeeecCC-CHHHHHHHHHHH
Confidence 9999997 677788888765
No 48
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.78 E-value=1.8e-18 Score=133.51 Aligned_cols=101 Identities=19% Similarity=0.371 Sum_probs=86.7
Q ss_pred cccccccChhHHHHHHHhC--CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 029863 80 AVEVPAVTDATWQSLVLDS--GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTV 157 (186)
Q Consensus 80 ~~~v~~l~~~~~~~~~~~~--~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~ 157 (186)
-..+..++.++|...+... +++|||+||++||++|+.+.|.|++|+++|++ ++|+++|.++. ...|+++++||+
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~~---~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQC---IPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHHh---HhhCCCCCCCEE
Confidence 3667788899998776655 35999999999999999999999999999975 99999999864 689999999999
Q ss_pred EEEeCCeEEEEEeCC-------CCHHHHHHHHHh
Q 029863 158 MIFKNGEKKDTVIGA-------VPKSTLTTSIEK 184 (186)
Q Consensus 158 i~~~~G~~~~~~~G~-------~~~~~l~~~l~~ 184 (186)
++|+||+.+.++.|. .+.++|+.+|.+
T Consensus 157 liyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 157 LVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 999999999999985 346777777654
No 49
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.78 E-value=3.9e-18 Score=114.48 Aligned_cols=92 Identities=49% Similarity=1.020 Sum_probs=81.9
Q ss_pred HHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEE
Q 029863 90 TWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 169 (186)
Q Consensus 90 ~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~ 169 (186)
+|++.+. .+++++|+||++||++|+.+.+.++++.++ .+++.++.+|++++.+++++|++.++|+++++++|+.+..+
T Consensus 2 ~~~~~~~-~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEELIK-SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHHHHh-cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 4555443 449999999999999999999999999988 56699999999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHH
Q 029863 170 IGAVPKSTLTTSIE 183 (186)
Q Consensus 170 ~G~~~~~~l~~~l~ 183 (186)
.|..+.+.|.++|+
T Consensus 80 ~g~~~~~~l~~~i~ 93 (93)
T cd02947 80 VGADPKEELEEFLE 93 (93)
T ss_pred ecCCCHHHHHHHhC
Confidence 99988888988773
No 50
>PTZ00102 disulphide isomerase; Provisional
Probab=99.77 E-value=2e-18 Score=149.62 Aligned_cols=106 Identities=25% Similarity=0.528 Sum_probs=96.0
Q ss_pred cccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC--ceEEEEEeCCCChHHHHHcCCCcccEE
Q 029863 80 AVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG--KLKCYKVNTDESPSIATRYGIRSIPTV 157 (186)
Q Consensus 80 ~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~v~~d~~~~l~~~~~i~~~Pt~ 157 (186)
...+..+++++|++.+...+++++|+||++||++|+.++|.++++++.+.+ .+.++.+|++.+...+++|+++++||+
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~ 435 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTI 435 (477)
T ss_pred CCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeE
Confidence 445778899999998888899999999999999999999999999999875 489999999999999999999999999
Q ss_pred EEEeCCeEE-EEEeCCCCHHHHHHHHHhh
Q 029863 158 MIFKNGEKK-DTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 158 i~~~~G~~~-~~~~G~~~~~~l~~~l~~~ 185 (186)
++|++|+.+ .++.|..+.+.+.++|+++
T Consensus 436 ~~~~~~~~~~~~~~G~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 436 LFVKAGERTPIPYEGERTVEGFKEFVNKH 464 (477)
T ss_pred EEEECCCcceeEecCcCCHHHHHHHHHHc
Confidence 999988654 4789999999999999875
No 51
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.77 E-value=1.5e-18 Score=123.51 Aligned_cols=84 Identities=30% Similarity=0.560 Sum_probs=74.3
Q ss_pred cccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC---ceEEEEEeCC--CChHHHHHcCCCcccE
Q 029863 82 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTD--ESPSIATRYGIRSIPT 156 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~v~~d--~~~~l~~~~~i~~~Pt 156 (186)
.+.+++.++|++.+...+++++|+||++||++|+.+.|.++++++++.+ .+.+..+|++ .+++++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 3567889999998888889999999999999999999999999998754 4889999975 4678999999999999
Q ss_pred EEEEeCCeE
Q 029863 157 VMIFKNGEK 165 (186)
Q Consensus 157 ~i~~~~G~~ 165 (186)
+++|++|..
T Consensus 82 ~~lf~~~~~ 90 (114)
T cd02992 82 LRYFPPFSK 90 (114)
T ss_pred EEEECCCCc
Confidence 999998873
No 52
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.76 E-value=4.4e-18 Score=146.14 Aligned_cols=110 Identities=19% Similarity=0.329 Sum_probs=92.3
Q ss_pred cccccccccccChhHHHHHHH--hCCCcEEEEEECCCCcccccchHHHHHHHHHhcCc-eEEEEEeCCCCh-HHH-HHcC
Q 029863 76 AQETAVEVPAVTDATWQSLVL--DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDESP-SIA-TRYG 150 (186)
Q Consensus 76 ~~~~~~~v~~l~~~~~~~~~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~d~~~-~l~-~~~~ 150 (186)
.......+..++.++|++.+. ..++++||+||++||++|+.++|.|+++++++.+. +.++.+|+|.+. .++ ++|+
T Consensus 346 dl~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~ 425 (463)
T TIGR00424 346 DIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQ 425 (463)
T ss_pred cccCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcC
Confidence 333556788899999999764 46899999999999999999999999999999875 899999999764 454 7899
Q ss_pred CCcccEEEEEeCCeE-EEEEe-CCCCHHHHHHHHHhh
Q 029863 151 IRSIPTVMIFKNGEK-KDTVI-GAVPKSTLTTSIEKF 185 (186)
Q Consensus 151 i~~~Pt~i~~~~G~~-~~~~~-G~~~~~~l~~~l~~~ 185 (186)
|+++||+++|++|.. ...|. |..+.+.|..||+.+
T Consensus 426 I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 426 LGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 999999999998853 33465 578999999999864
No 53
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.76 E-value=1.3e-17 Score=111.06 Aligned_cols=81 Identities=31% Similarity=0.530 Sum_probs=73.9
Q ss_pred EEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHH
Q 029863 102 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTS 181 (186)
Q Consensus 102 vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~ 181 (186)
.+..||++||++|+.+.+.+++++++++.++.++.+|.+++++++++||++++||+++ +|+ .++.|..+.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 4778999999999999999999999998789999999999999999999999999975 776 378899999999999
Q ss_pred HHhhC
Q 029863 182 IEKFL 186 (186)
Q Consensus 182 l~~~l 186 (186)
|++.|
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 98865
No 54
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.76 E-value=8.3e-18 Score=144.65 Aligned_cols=103 Identities=30% Similarity=0.607 Sum_probs=92.8
Q ss_pred cccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccEEE
Q 029863 82 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESPSIATRYGIRSIPTVM 158 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~v~~d~~~~l~~~~~i~~~Pt~i 158 (186)
.+..+++++|++.+ .++++++|+||++||++|+++.|.+.++++.+.+ ++.++.+|++++++++++|+|.++||++
T Consensus 2 ~v~~l~~~~~~~~i-~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 2 DVLVLTKDNFDDFI-KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK 80 (462)
T ss_pred CceECCHHHHHHHH-hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence 45678999998865 5678999999999999999999999999988754 3999999999999999999999999999
Q ss_pred EEeCCeE-EEEEeCCCCHHHHHHHHHhh
Q 029863 159 IFKNGEK-KDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 159 ~~~~G~~-~~~~~G~~~~~~l~~~l~~~ 185 (186)
+|++|+. +.++.|..+.+.|.+++++.
T Consensus 81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 81 IFRNGEDSVSDYNGPRDADGIVKYMKKQ 108 (462)
T ss_pred EEeCCccceeEecCCCCHHHHHHHHHHh
Confidence 9999987 77899999999999999875
No 55
>PLN02309 5'-adenylylsulfate reductase
Probab=99.75 E-value=1.1e-17 Score=143.55 Aligned_cols=110 Identities=22% Similarity=0.412 Sum_probs=93.6
Q ss_pred cccccccccccChhHHHHHHH--hCCCcEEEEEECCCCcccccchHHHHHHHHHhcCc-eEEEEEeCC-CChHHHH-HcC
Q 029863 76 AQETAVEVPAVTDATWQSLVL--DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTD-ESPSIAT-RYG 150 (186)
Q Consensus 76 ~~~~~~~v~~l~~~~~~~~~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~d-~~~~l~~-~~~ 150 (186)
.......+.+++.++|++++. ..++++||+||++||++|+.+.|.|+++++++.+. +.|+.+|+| ++.++++ +|+
T Consensus 340 dl~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~ 419 (457)
T PLN02309 340 DIFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQ 419 (457)
T ss_pred cccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCC
Confidence 344556788899999988764 56899999999999999999999999999999764 999999999 7788886 699
Q ss_pred CCcccEEEEEeCCeE-EEEEeC-CCCHHHHHHHHHhh
Q 029863 151 IRSIPTVMIFKNGEK-KDTVIG-AVPKSTLTTSIEKF 185 (186)
Q Consensus 151 i~~~Pt~i~~~~G~~-~~~~~G-~~~~~~l~~~l~~~ 185 (186)
|.++||+++|++|.. ...|.| ..+.+.|..||+++
T Consensus 420 I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 LGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999999987753 335654 68999999999875
No 56
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.74 E-value=9.5e-18 Score=116.45 Aligned_cols=88 Identities=24% Similarity=0.395 Sum_probs=80.9
Q ss_pred CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--cccEEEEEeC--CeEEEEEeCCCC
Q 029863 99 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIR--SIPTVMIFKN--GEKKDTVIGAVP 174 (186)
Q Consensus 99 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~--~~Pt~i~~~~--G~~~~~~~G~~~ 174 (186)
++++++.||++||++|+++.+.++++++++.+++.|+++|.|+++++++.||+. ++|+++++++ |++.....|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 799999999999999999999999999999999999999999999999999999 9999999988 766655556678
Q ss_pred HHHHHHHHHhhC
Q 029863 175 KSTLTTSIEKFL 186 (186)
Q Consensus 175 ~~~l~~~l~~~l 186 (186)
.+.|.+||++++
T Consensus 92 ~~~l~~fi~~~~ 103 (103)
T cd02982 92 AESLEEFVEDFL 103 (103)
T ss_pred HHHHHHHHHhhC
Confidence 999999999874
No 57
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.7e-18 Score=145.66 Aligned_cols=105 Identities=28% Similarity=0.579 Sum_probs=95.5
Q ss_pred ccccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCccc
Q 029863 79 TAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESPSIATRYGIRSIP 155 (186)
Q Consensus 79 ~~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~v~~d~~~~l~~~~~i~~~P 155 (186)
....+..++.++|+.. ......++|.||||||++|+.+.|.+++.+..+.. .+...+||+.++.++|.+|+|+++|
T Consensus 23 ~~~~Vl~Lt~dnf~~~-i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKET-INGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccceEEEecccHHHH-hccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 4567788999999885 55678899999999999999999999999998876 4899999999999999999999999
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 029863 156 TVMIFKNGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 156 t~i~~~~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
|+.+|+||+....|.|....+.+..||.+
T Consensus 102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREADGIVKWLKK 130 (493)
T ss_pred eEEEEecCCcceeccCcccHHHHHHHHHh
Confidence 99999999986789999999999999875
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=99.74 E-value=2.4e-17 Score=142.90 Aligned_cols=103 Identities=27% Similarity=0.580 Sum_probs=92.9
Q ss_pred ccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhc---CceEEEEEeCCCChHHHHHcCCCcccEE
Q 029863 81 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYV---GKLKCYKVNTDESPSIATRYGIRSIPTV 157 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~v~~d~~~~l~~~~~i~~~Pt~ 157 (186)
..+..++.++|+..+ .+++.++|+||++||++|+++.|.+.++++.+. .++.++.+|++++.+++++|+|.++||+
T Consensus 32 ~~v~~l~~~~f~~~i-~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 32 EHVTVLTDSTFDKFI-TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCcEEcchhhHHHHH-hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 467889999998855 567899999999999999999999999987764 3599999999999999999999999999
Q ss_pred EEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 158 MIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 158 i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
++|++|+.+ ++.|..+.+.|.++++++
T Consensus 111 ~~~~~g~~~-~y~g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 111 KFFNKGNPV-NYSGGRTADGIVSWIKKL 137 (477)
T ss_pred EEEECCceE-EecCCCCHHHHHHHHHHh
Confidence 999999877 899999999999999875
No 59
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.72 E-value=5.1e-17 Score=124.89 Aligned_cols=106 Identities=23% Similarity=0.491 Sum_probs=79.5
Q ss_pred cccccccccCh--hHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh------------
Q 029863 78 ETAVEVPAVTD--ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP------------ 143 (186)
Q Consensus 78 ~~~~~v~~l~~--~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~------------ 143 (186)
.+...+.++++ +.+.......||+++|+||++||++|++++|.++++.++ ++.++.++.++++
T Consensus 45 ~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~ 121 (185)
T PRK15412 45 VPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGN 121 (185)
T ss_pred CCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCC
Confidence 34455555552 333222233689999999999999999999999998653 4788888875543
Q ss_pred -----------HHHHHcCCCcccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 144 -----------SIATRYGIRSIPTVMIF-KNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 144 -----------~l~~~~~i~~~Pt~i~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
.+++.||+.++|+.+++ ++|+++.++.|..+++++++.|+.++
T Consensus 122 ~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 122 PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 24557899999965455 69999999999999999998887753
No 60
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.72 E-value=4.6e-17 Score=116.33 Aligned_cols=93 Identities=15% Similarity=0.383 Sum_probs=75.6
Q ss_pred ChhHHHHHHHhC-CCcEEEEEEC-------CCCcccccchHHHHHHHHHhcCceEEEEEeCCC-------ChHHHHHcCC
Q 029863 87 TDATWQSLVLDS-GSPVLVEFWA-------PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-------SPSIATRYGI 151 (186)
Q Consensus 87 ~~~~~~~~~~~~-~k~vvv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~-------~~~l~~~~~i 151 (186)
+.++|.+.+... +++++|+||| +||++|++++|.++++.+++++++.++.||+++ +.+++++|+|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 556777766643 7899999999 999999999999999999998779999999976 4589999999
Q ss_pred C-cccEEEEEeCCeEEEEEeCC--CCHHHHHHHH
Q 029863 152 R-SIPTVMIFKNGEKKDTVIGA--VPKSTLTTSI 182 (186)
Q Consensus 152 ~-~~Pt~i~~~~G~~~~~~~G~--~~~~~l~~~l 182 (186)
. ++||++++++|++ +.|. .+.+.+..++
T Consensus 88 ~~~iPT~~~~~~~~~---l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 88 TTGVPTLLRWKTPQR---LVEDECLQADLVEMFF 118 (119)
T ss_pred ccCCCEEEEEcCCce---ecchhhcCHHHHHHhh
Confidence 8 9999999988853 3332 3455554443
No 61
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.71 E-value=3.9e-17 Score=115.95 Aligned_cols=97 Identities=18% Similarity=0.261 Sum_probs=78.9
Q ss_pred ccccChhHHHHHHHhCCCcEEEEEEC--CCCc---ccccchHHHHHHHHHhcCceEEEEEeCC-----CChHHHHHcCCC
Q 029863 83 VPAVTDATWQSLVLDSGSPVLVEFWA--PWCG---PCRMIHPIIDELSKQYVGKLKCYKVNTD-----ESPSIATRYGIR 152 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~~k~vvv~F~a--~wC~---~C~~~~p~l~~l~~~~~~~v~~~~v~~d-----~~~~l~~~~~i~ 152 (186)
+..|+..+|++.+ .+.+.+||.||| |||+ +|+.+.|.+.+.+ +.|.+..||++ ++.+|+++|+|+
T Consensus 3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa----~~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT----DDLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc----CceEEEEEecccccchhhHHHHHHhCCC
Confidence 4678999999854 677899999999 8888 6666666555543 34899999994 568899999999
Q ss_pred --cccEEEEEeCCe--EEEEEeCC-CCHHHHHHHHHh
Q 029863 153 --SIPTVMIFKNGE--KKDTVIGA-VPKSTLTTSIEK 184 (186)
Q Consensus 153 --~~Pt~i~~~~G~--~~~~~~G~-~~~~~l~~~l~~ 184 (186)
++||+++|++|+ ....+.|. .+.+.|.+||++
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 999999999995 33578896 999999999976
No 62
>PTZ00062 glutaredoxin; Provisional
Probab=99.71 E-value=1.2e-16 Score=124.07 Aligned_cols=88 Identities=14% Similarity=0.163 Sum_probs=75.8
Q ss_pred ChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE
Q 029863 87 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 166 (186)
Q Consensus 87 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~ 166 (186)
+.+++.+.+....+.+|++||++||++|+.+.+.+.+++++|++ +.|+.||.| |+|.++||+++|+||+++
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 56677776654447789999999999999999999999999976 999999987 999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHh
Q 029863 167 DTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 167 ~~~~G~~~~~~l~~~l~~ 184 (186)
.++.|.- ..+|...+++
T Consensus 76 ~r~~G~~-~~~~~~~~~~ 92 (204)
T PTZ00062 76 NSLEGCN-TSTLVSFIRG 92 (204)
T ss_pred eeeeCCC-HHHHHHHHHH
Confidence 9999974 5556666654
No 63
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.68 E-value=3.7e-17 Score=115.23 Aligned_cols=86 Identities=24% Similarity=0.551 Sum_probs=67.6
Q ss_pred hCCCcEEEEEECCCCcccccchHHHHH---HHHHhcCceEEEEEeCCCC--------------------hHHHHHcCCCc
Q 029863 97 DSGSPVLVEFWAPWCGPCRMIHPIIDE---LSKQYVGKLKCYKVNTDES--------------------PSIATRYGIRS 153 (186)
Q Consensus 97 ~~~k~vvv~F~a~wC~~C~~~~p~l~~---l~~~~~~~v~~~~v~~d~~--------------------~~l~~~~~i~~ 153 (186)
.++++++++||++||++|+.+.+.+.+ +...+.+++.++.++++.. .+++++|||++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 468999999999999999999999985 4445555688888888753 35899999999
Q ss_pred ccEEEEEe-CCeEEEEEeCCCCHHHHHHHH
Q 029863 154 IPTVMIFK-NGEKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 154 ~Pt~i~~~-~G~~~~~~~G~~~~~~l~~~l 182 (186)
+||+++++ +|+++.++.|..++++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999985 899999999999999998865
No 64
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.68 E-value=3.1e-16 Score=119.21 Aligned_cols=107 Identities=24% Similarity=0.488 Sum_probs=79.3
Q ss_pred ccccccccccChh--HHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCC--------------
Q 029863 77 QETAVEVPAVTDA--TWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD-------------- 140 (186)
Q Consensus 77 ~~~~~~v~~l~~~--~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d-------------- 140 (186)
..+..++.+++++ .+.......+++++|+||++||++|+++.|.++++.++ ++.++.++.+
T Consensus 39 ~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~ 115 (173)
T TIGR00385 39 PVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELG 115 (173)
T ss_pred CCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcC
Confidence 3444555555443 23211233689999999999999999999999998763 3666666543
Q ss_pred ---------CChHHHHHcCCCcccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 141 ---------ESPSIATRYGIRSIPTVMIF-KNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 141 ---------~~~~l~~~~~i~~~Pt~i~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
.+..++++|++.++|+.+++ +||+++.++.|..+.++++++|++++
T Consensus 116 ~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 116 NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 33457788999999965444 79999999999999999999998864
No 65
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.68 E-value=2.5e-16 Score=137.00 Aligned_cols=103 Identities=21% Similarity=0.386 Sum_probs=82.7
Q ss_pred ccccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEE--------------------
Q 029863 79 TAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKV-------------------- 137 (186)
Q Consensus 79 ~~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v-------------------- 137 (186)
+...+.++++.+. ...+||+|||+|||+||++|++++|.|+++++++.+ ++.++.|
T Consensus 39 P~f~l~D~dG~~v---~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~ 115 (521)
T PRK14018 39 STLKTADNRPASV---YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAG 115 (521)
T ss_pred CCeEeecCCCcee---eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHh
Confidence 3445555555544 344799999999999999999999999999999873 4655544
Q ss_pred --------eCCCChHHHHHcCCCcccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHh
Q 029863 138 --------NTDESPSIATRYGIRSIPTVMIF-KNGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 138 --------~~d~~~~l~~~~~i~~~Pt~i~~-~~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
++|.+..+++.|+|.++||++++ ++|+++.++.|.++.++|.++|+.
T Consensus 116 ~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 116 LDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred CCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 34556679999999999997555 799999999999999999999873
No 66
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.67 E-value=8.3e-17 Score=115.03 Aligned_cols=78 Identities=21% Similarity=0.495 Sum_probs=63.5
Q ss_pred HHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh-HHHHHcCCCc--ccEEEEEe-CCeEEEEEe
Q 029863 95 VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-SIATRYGIRS--IPTVMIFK-NGEKKDTVI 170 (186)
Q Consensus 95 ~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~-~l~~~~~i~~--~Pt~i~~~-~G~~~~~~~ 170 (186)
...++++++|+||++||++|+.++|.+.+..........++.+++|.+. ...++|++.+ +||+++++ +|+++.++.
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~ 94 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEII 94 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhc
Confidence 4567999999999999999999999999977765444567778877664 4568899986 99999995 999888655
Q ss_pred CC
Q 029863 171 GA 172 (186)
Q Consensus 171 G~ 172 (186)
+.
T Consensus 95 ~~ 96 (117)
T cd02959 95 NK 96 (117)
T ss_pred cC
Confidence 54
No 67
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.66 E-value=5.3e-16 Score=121.90 Aligned_cols=87 Identities=25% Similarity=0.447 Sum_probs=74.0
Q ss_pred CCcEEEEEEC---CCCcccccchHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEE-EEeCCC
Q 029863 99 GSPVLVEFWA---PWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD-TVIGAV 173 (186)
Q Consensus 99 ~k~vvv~F~a---~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~-~~~G~~ 173 (186)
+...++.|++ +||++|+.+.|.++++++++++ .+.++.+|.|++++++++|+|+++||+++|++|+.+. ++.|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 3344556877 9999999999999999999954 2456666677999999999999999999999999874 899999
Q ss_pred CHHHHHHHHHhh
Q 029863 174 PKSTLTTSIEKF 185 (186)
Q Consensus 174 ~~~~l~~~l~~~ 185 (186)
+.+++..+|+++
T Consensus 99 ~~~~l~~~i~~~ 110 (215)
T TIGR02187 99 AGYEFAALIEDI 110 (215)
T ss_pred CHHHHHHHHHHH
Confidence 999999998865
No 68
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.66 E-value=4.5e-16 Score=112.14 Aligned_cols=79 Identities=27% Similarity=0.661 Sum_probs=65.9
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEe-----------------------CCCChHHHHHcCCCcc
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVN-----------------------TDESPSIATRYGIRSI 154 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~-----------------------~d~~~~l~~~~~i~~~ 154 (186)
.|++++|+||++||++|+.+.|.++++.+++. +.++.++ .|.+..+++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 58999999999999999999999999988762 6666665 3455678889999999
Q ss_pred cEEEEE-eCCeEEEEEeCCCCHHHH
Q 029863 155 PTVMIF-KNGEKKDTVIGAVPKSTL 178 (186)
Q Consensus 155 Pt~i~~-~~G~~~~~~~G~~~~~~l 178 (186)
|+.+++ ++|+++.++.|..+++.|
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 964444 799999999999988765
No 69
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.66 E-value=3.8e-16 Score=134.33 Aligned_cols=104 Identities=27% Similarity=0.561 Sum_probs=91.7
Q ss_pred cccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCCCcccE
Q 029863 80 AVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESPSIATRYGIRSIPT 156 (186)
Q Consensus 80 ~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~v~~d~~~~l~~~~~i~~~Pt 156 (186)
...+..+++.+|++.+...+++++|+||++||++|+.+.|.++++++.+.+ ++.++.+|++.+. +.. |+|+++||
T Consensus 345 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt 422 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPT 422 (462)
T ss_pred CCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCE
Confidence 346778899999998888899999999999999999999999999999987 6999999999874 344 99999999
Q ss_pred EEEEeCCeEE--EEEeCCCCHHHHHHHHHhh
Q 029863 157 VMIFKNGEKK--DTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 157 ~i~~~~G~~~--~~~~G~~~~~~l~~~l~~~ 185 (186)
+++|++|... ..+.|..+.+.|.++|++.
T Consensus 423 ~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 423 IKFVPAGKKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred EEEEeCCCCcCceEecCcCCHHHHHHHHHhc
Confidence 9999988753 5788999999999999874
No 70
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.65 E-value=1.3e-15 Score=113.65 Aligned_cols=87 Identities=24% Similarity=0.464 Sum_probs=69.2
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC------------hHHH-HHc---CCCcccEEEEEe
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES------------PSIA-TRY---GIRSIPTVMIFK 161 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~------------~~l~-~~~---~i~~~Pt~i~~~ 161 (186)
.++..+|+||++||++|++++|.+++++++|. +.++.++.|+. .+.. ..| ++.++||.++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 35677999999999999999999999999984 66767776643 2333 445 889999977774
Q ss_pred -CCeE-EEEEeCCCCHHHHHHHHHhhC
Q 029863 162 -NGEK-KDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 162 -~G~~-~~~~~G~~~~~~l~~~l~~~l 186 (186)
+|++ +.+..|.++.+++++.|+++|
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 6664 557899999999999998875
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.64 E-value=3.6e-15 Score=117.16 Aligned_cols=95 Identities=23% Similarity=0.433 Sum_probs=78.0
Q ss_pred ccChhHHHHHHHhCCCcE-EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC
Q 029863 85 AVTDATWQSLVLDSGSPV-LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 163 (186)
Q Consensus 85 ~l~~~~~~~~~~~~~k~v-vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G 163 (186)
.++.+..+. +...++++ ++.||++||++|+.+.+.+++++.++ +++.+..+|.+++++++++|||+++||++++++|
T Consensus 119 ~L~~~~~~~-l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~ 196 (215)
T TIGR02187 119 GLSEKTVEL-LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGV 196 (215)
T ss_pred CCCHHHHHH-HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCC
Confidence 444444443 33344554 55599999999999999999999885 4699999999999999999999999999999888
Q ss_pred eEEEEEeCCCCHHHHHHHHHh
Q 029863 164 EKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 164 ~~~~~~~G~~~~~~l~~~l~~ 184 (186)
+. +.|..+.++|.++|+.
T Consensus 197 ~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 197 EE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred EE---EECCCCHHHHHHHHHh
Confidence 63 8899999999998864
No 72
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.63 E-value=7.8e-15 Score=106.15 Aligned_cols=104 Identities=15% Similarity=0.287 Sum_probs=87.9
Q ss_pred cccccChhHHHHHHHhCCCcEEEEEE-CC-CCcccccchHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEE
Q 029863 82 EVPAVTDATWQSLVLDSGSPVLVEFW-AP-WCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVM 158 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~~~~k~vvv~F~-a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~~~~l~~~~~i~~~Pt~i 158 (186)
..+.++..+++......+ ..+|.|- ++ -++.+....-.|++++++|.+ +++++++|+|++++++.+|||+++||++
T Consensus 18 g~~~~~~~~~~~~~~~~~-~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 18 GWTPVSESRLDDWLTQAP-DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCCccccccHHHHHhCCC-cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 556677778877664444 3444343 22 388999999999999999984 5999999999999999999999999999
Q ss_pred EEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 159 IFKNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 159 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
+|+||+.+.++.|..+++++.++|+++|
T Consensus 97 ~FkdGk~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 97 VFTGGNYRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred EEECCEEEEEEeCcCCHHHHHHHHHHHh
Confidence 9999999999999999999999999874
No 73
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.63 E-value=1.6e-15 Score=100.23 Aligned_cols=73 Identities=16% Similarity=0.352 Sum_probs=61.3
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCC-CHHHHHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAV-PKSTLTTS 181 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~-~~~~l~~~ 181 (186)
.|.||++||++|+.++|.+++++++++.++.++.+| +.+.+.+||+.++||+++ ||+++ +.|.. +.++|.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 378999999999999999999999998888887777 345588999999999977 88876 77854 44777776
Q ss_pred H
Q 029863 182 I 182 (186)
Q Consensus 182 l 182 (186)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 74
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.63 E-value=1.8e-15 Score=134.11 Aligned_cols=98 Identities=16% Similarity=0.483 Sum_probs=81.7
Q ss_pred ChhHHHHHHH---hCCCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEEeCCCC----hHHHHHcCCCcccE
Q 029863 87 TDATWQSLVL---DSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDES----PSIATRYGIRSIPT 156 (186)
Q Consensus 87 ~~~~~~~~~~---~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v~~d~~----~~l~~~~~i~~~Pt 156 (186)
+.+++++.+. .+||+|+|+||++||++|+.+++.+ +++.++++ ++.++++|++++ .+++++|++.++||
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 3456655443 4589999999999999999999875 67888776 488999998753 68999999999999
Q ss_pred EEEEe-CCeE--EEEEeCCCCHHHHHHHHHhh
Q 029863 157 VMIFK-NGEK--KDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 157 ~i~~~-~G~~--~~~~~G~~~~~~l~~~l~~~ 185 (186)
+++|+ ||++ +.++.|..+.+++.++|+++
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99996 8887 46889999999999999875
No 75
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.62 E-value=5.2e-15 Score=106.63 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=73.6
Q ss_pred ChhHHHHHHHhCCCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEEeCCCChHHHHH--------cCCCccc
Q 029863 87 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDESPSIATR--------YGIRSIP 155 (186)
Q Consensus 87 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v~~d~~~~l~~~--------~~i~~~P 155 (186)
+++.+.. ..+++|+|+|+|+++||++|+++++.. .++.+....++.++.+|.++.+++++. ||+.++|
T Consensus 4 ~~eal~~-Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 4 GEEAFEK-ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred CHHHHHH-HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 4555644 567899999999999999999998744 467777666799999999998887763 5899999
Q ss_pred EEEEE-eCCeEEEEEeCC-----CCHHHHHHHHHh
Q 029863 156 TVMIF-KNGEKKDTVIGA-----VPKSTLTTSIEK 184 (186)
Q Consensus 156 t~i~~-~~G~~~~~~~G~-----~~~~~l~~~l~~ 184 (186)
+++++ .+|+++....+. .+...+.+++++
T Consensus 83 t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 83 LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 99888 589988766554 223345555543
No 76
>PHA02125 thioredoxin-like protein
Probab=99.62 E-value=3.6e-15 Score=98.28 Aligned_cols=71 Identities=28% Similarity=0.594 Sum_probs=59.7
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCC-HHHHHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP-KSTLTTS 181 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~-~~~l~~~ 181 (186)
+++||++||++|+.+.|.|+++. +.++.+|.|++++++++|+|+++||++ +|+.+.++.|... ..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999998762 568899999999999999999999986 7888889999633 3555554
Q ss_pred H
Q 029863 182 I 182 (186)
Q Consensus 182 l 182 (186)
|
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 3
No 77
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.61 E-value=7.2e-15 Score=111.02 Aligned_cols=108 Identities=25% Similarity=0.554 Sum_probs=86.8
Q ss_pred ccccccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCc-eEEEEEeCCC--------------
Q 029863 77 QETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDE-------------- 141 (186)
Q Consensus 77 ~~~~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~d~-------------- 141 (186)
..+...+..++++.+.. ....+++++|+||++||++|+...+.+.++++++.+. +.++.++.|+
T Consensus 40 ~~p~~~~~~~~g~~~~l-~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~ 118 (173)
T PRK03147 40 EAPNFVLTDLEGKKIEL-KDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGL 118 (173)
T ss_pred CCCCcEeecCCCCEEeH-HHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCC
Confidence 33445555666655532 2235899999999999999999999999999999764 8888888753
Q ss_pred --------ChHHHHHcCCCcccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 142 --------SPSIATRYGIRSIPTVMIF-KNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 142 --------~~~l~~~~~i~~~Pt~i~~-~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
+..+++.|++.++|+++++ ++|+++..+.|..+.+++.++++++
T Consensus 119 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 119 TFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 3567899999999987777 5899888899999999999998875
No 78
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.6e-16 Score=132.15 Aligned_cols=102 Identities=30% Similarity=0.614 Sum_probs=87.0
Q ss_pred ccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCc--eEEEEEeCCCChHHHHHcCCCcccEEE
Q 029863 81 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK--LKCYKVNTDESPSIATRYGIRSIPTVM 158 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~--v~~~~v~~d~~~~l~~~~~i~~~Pt~i 158 (186)
..+..+.+++|++++...+|-|||.||||||++|+++.|.+++|++.|++. +.+.++|...|. .....++++|||+
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~ 443 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTIL 443 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEE
Confidence 457888999999999999999999999999999999999999999999874 788888876552 3455778899999
Q ss_pred EEeCCe--EEEEEeCCCCHHHHHHHHHh
Q 029863 159 IFKNGE--KKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 159 ~~~~G~--~~~~~~G~~~~~~l~~~l~~ 184 (186)
+++.|. ....+.|.++.++|..+|++
T Consensus 444 ~~pag~k~~pv~y~g~R~le~~~~fi~~ 471 (493)
T KOG0190|consen 444 FFPAGHKSNPVIYNGDRTLEDLKKFIKK 471 (493)
T ss_pred EecCCCCCCCcccCCCcchHHHHhhhcc
Confidence 998775 34467899999999998875
No 79
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.60 E-value=4.1e-15 Score=109.94 Aligned_cols=71 Identities=20% Similarity=0.418 Sum_probs=59.0
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcC--------ceEEEEEeCCCCh-------------------------H
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG--------KLKCYKVNTDESP-------------------------S 144 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--------~v~~~~v~~d~~~-------------------------~ 144 (186)
+||+++|+|||+||++|++++|.|.++++++.+ ++.++.|+.|++. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 689999999999999999999999998876653 4888888876432 4
Q ss_pred HHHHcCCCcccEEEEEe-CCeEEEE
Q 029863 145 IATRYGIRSIPTVMIFK-NGEKKDT 168 (186)
Q Consensus 145 l~~~~~i~~~Pt~i~~~-~G~~~~~ 168 (186)
++++|++.++||+++++ +|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 77789999999987775 8887754
No 80
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.60 E-value=1.9e-14 Score=116.76 Aligned_cols=85 Identities=20% Similarity=0.348 Sum_probs=71.8
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC-----------ChHHHHHcCCCcccEEEEEeC-CeE
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-----------SPSIATRYGIRSIPTVMIFKN-GEK 165 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~-----------~~~l~~~~~i~~~Pt~i~~~~-G~~ 165 (186)
.++++||+||++||++|+.+.|.+++++++|. +.++.|++|. +..++++|||+++||++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 58999999999999999999999999999985 6777777765 357899999999999999975 555
Q ss_pred EE-EEeCCCCHHHHHHHHHh
Q 029863 166 KD-TVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 166 ~~-~~~G~~~~~~l~~~l~~ 184 (186)
+. ...|..+.++|.+.|..
T Consensus 243 v~~v~~G~~s~~eL~~~i~~ 262 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILL 262 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHH
Confidence 44 56699999999887764
No 81
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.59 E-value=2.2e-15 Score=121.01 Aligned_cols=99 Identities=27% Similarity=0.576 Sum_probs=81.7
Q ss_pred cccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCc---eEEEEEeCCCChHHHHHcCCCcccEEE
Q 029863 82 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK---LKCYKVNTDESPSIATRYGIRSIPTVM 158 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~v~~d~~~~l~~~~~i~~~Pt~i 158 (186)
.+.++++ .|++ ...+..++|+||||||++|++++|.|.++.-++++. +++.++|+..-+.++.+|||+++||+.
T Consensus 29 ~VeDLdd-kFkd--nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk 105 (468)
T KOG4277|consen 29 AVEDLDD-KFKD--NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIK 105 (468)
T ss_pred hhhhhhH-Hhhh--cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEE
Confidence 3444444 3433 234678999999999999999999999997776653 899999999999999999999999999
Q ss_pred EEeCCeEEEEEeCCCCHHHHHHHHHh
Q 029863 159 IFKNGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 159 ~~~~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
+|++|..+. +.|...++.|..+..+
T Consensus 106 ~~kgd~a~d-YRG~R~Kd~iieFAhR 130 (468)
T KOG4277|consen 106 FFKGDHAID-YRGGREKDAIIEFAHR 130 (468)
T ss_pred EecCCeeee-cCCCccHHHHHHHHHh
Confidence 999997764 7888899999887653
No 82
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.58 E-value=3.7e-14 Score=112.58 Aligned_cols=111 Identities=17% Similarity=0.174 Sum_probs=82.0
Q ss_pred ccccccccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCc-eEEEEEeCCC-------C----
Q 029863 75 EAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDE-------S---- 142 (186)
Q Consensus 75 ~~~~~~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~d~-------~---- 142 (186)
+......++++++++.+.. ..-.||++||+||++||++|+...|.|++++++|.++ +.++.|+++. .
T Consensus 76 g~~aPdF~l~d~~G~~vsL-sd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei 154 (236)
T PLN02399 76 EKSVHDFTVKDIDGKDVAL-SKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 154 (236)
T ss_pred CCCCCceEEECCCCCEEeH-HHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHH
Confidence 3445566666777665532 2235899999999999999999999999999999864 8999988641 1
Q ss_pred hHHH-HHcCC----------------------------------CcccEE-EEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 143 PSIA-TRYGI----------------------------------RSIPTV-MIFKNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 143 ~~l~-~~~~i----------------------------------~~~Pt~-i~~~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
.+++ +++++ +..|+. ++.++|+++.++.|..++++|++.|+++|
T Consensus 155 ~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 155 KQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred HHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 1232 23222 224764 44479999999999999999999998875
No 83
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.58 E-value=1.2e-14 Score=136.61 Aligned_cols=88 Identities=24% Similarity=0.443 Sum_probs=77.0
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCc-eEEEEEeC---------------------------CCChHHHHHc
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNT---------------------------DESPSIATRY 149 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~---------------------------d~~~~l~~~~ 149 (186)
.||++||+|||+||++|+++.|.|++++++|+++ +.++.+.. |.+..++++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 5899999999999999999999999999999875 77777742 2244678899
Q ss_pred CCCcccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 150 GIRSIPTVMIF-KNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 150 ~i~~~Pt~i~~-~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
+|.++|+++++ ++|+++.++.|....+.|.++|+++
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 99999998888 6999999999999999999998875
No 84
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.57 E-value=1e-14 Score=105.68 Aligned_cols=71 Identities=28% Similarity=0.568 Sum_probs=60.4
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcC---ceEEEEEeCCCC------------------------hHHHHHcC
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDES------------------------PSIATRYG 150 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~v~~d~~------------------------~~l~~~~~ 150 (186)
.||++||+||++||++|+.+.|.+.++.+++.+ ++.++.++.|.. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 589999999999999999999999999888864 478888887754 35778999
Q ss_pred CCcccEEEEEe-CCeEEEE
Q 029863 151 IRSIPTVMIFK-NGEKKDT 168 (186)
Q Consensus 151 i~~~Pt~i~~~-~G~~~~~ 168 (186)
|.++|++++++ +|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 99999988885 8887654
No 85
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.57 E-value=2.1e-14 Score=102.60 Aligned_cols=93 Identities=28% Similarity=0.559 Sum_probs=70.9
Q ss_pred ccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeC-----------------------
Q 029863 83 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNT----------------------- 139 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~----------------------- 139 (186)
+.+++++.+... ...+++++|+||++||++|+.+.|.+.++++++ .++.+..
T Consensus 5 l~~~~g~~~~~~-~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (123)
T cd03011 5 ATTLDGEQFDLE-SLSGKPVLVYFWATWCPVCRFTSPTVNQLAADY----PVVSVALRSGDDGAVARFMQKKGYGFPVIN 79 (123)
T ss_pred eecCCCCEeeHH-HhCCCEEEEEEECCcChhhhhhChHHHHHHhhC----CEEEEEccCCCHHHHHHHHHHcCCCccEEE
Confidence 344455444332 335799999999999999999999999998763 2333322
Q ss_pred CCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHH
Q 029863 140 DESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTT 180 (186)
Q Consensus 140 d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~ 180 (186)
|.+..++++|+|.++|+++++++|+++.++.|..++++|.+
T Consensus 80 d~~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 80 DPDGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred CCCcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 34567999999999999988875558889999999998865
No 86
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.55 E-value=1.8e-14 Score=104.74 Aligned_cols=71 Identities=28% Similarity=0.586 Sum_probs=59.9
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcC---ceEEEEEeCCCCh-------------------------HHHHHc
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESP-------------------------SIATRY 149 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~v~~d~~~-------------------------~l~~~~ 149 (186)
.||++||+||++||++|+...|.++++++++.+ ++.++.++.|... .+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 589999999999999999999999999988875 4888888877642 456779
Q ss_pred CCCcccEEEEEe-CCeEEEE
Q 029863 150 GIRSIPTVMIFK-NGEKKDT 168 (186)
Q Consensus 150 ~i~~~Pt~i~~~-~G~~~~~ 168 (186)
+|.++|++++++ +|+++.+
T Consensus 96 ~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCCCEEEEECCCCCEEch
Confidence 999999988885 8876653
No 87
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.55 E-value=2.4e-14 Score=97.95 Aligned_cols=66 Identities=39% Similarity=0.889 Sum_probs=55.6
Q ss_pred CCcEEEEEECCCCcccccchHHHHHHHHHhc--CceEEEEEeCCCCh-------------------------HHHHHcCC
Q 029863 99 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYV--GKLKCYKVNTDESP-------------------------SIATRYGI 151 (186)
Q Consensus 99 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~v~~d~~~-------------------------~l~~~~~i 151 (186)
||+++|+||++||++|++..|.+.++.++|+ +++.++.|+.|+.. .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 67999999888553 37788999
Q ss_pred CcccEEEEEe-CCe
Q 029863 152 RSIPTVMIFK-NGE 164 (186)
Q Consensus 152 ~~~Pt~i~~~-~G~ 164 (186)
.++|++++++ +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999987775 675
No 88
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.54 E-value=1.1e-14 Score=116.97 Aligned_cols=98 Identities=36% Similarity=0.597 Sum_probs=85.1
Q ss_pred ChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHh----c-CceEEEEEeCCCChHHHHHcCCCcccEEEEEe
Q 029863 87 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQY----V-GKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 161 (186)
Q Consensus 87 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~----~-~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~ 161 (186)
+.++++. +..+...|+|.|||.||+.+++++|.+++.++.+ + +++....||||.+..++.+|-|..+||+-+|.
T Consensus 2 t~~N~~~-il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDS-ILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHH-hhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4456655 4556899999999999999999999998877766 3 45889999999999999999999999999999
Q ss_pred CCeEEE-EEeCCCCHHHHHHHHHhh
Q 029863 162 NGEKKD-TVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 162 ~G~~~~-~~~G~~~~~~l~~~l~~~ 185 (186)
||.... .|.|.+..+.|.++|++-
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq 105 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQ 105 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHH
Confidence 998766 788999999999998763
No 89
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.54 E-value=3.1e-14 Score=110.66 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=77.0
Q ss_pred cccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCc-eEEEEEeCC-------CC----hHHHH
Q 029863 80 AVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTD-------ES----PSIAT 147 (186)
Q Consensus 80 ~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~d-------~~----~~l~~ 147 (186)
...+++++++.+.- ..-.||++||+||++||++|+..+|.|++++++|.++ +.++.++++ ++ ..+++
T Consensus 21 df~l~d~~G~~vsL-~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~ 99 (199)
T PTZ00056 21 DYTVKTLEGTTVPM-SSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFND 99 (199)
T ss_pred ceEEECCCCCEEeH-HHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHH
Confidence 34444455544422 2225899999999999999999999999999999764 999999864 22 23444
Q ss_pred HcCC------------------------------------Cccc----EEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 148 RYGI------------------------------------RSIP----TVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 148 ~~~i------------------------------------~~~P----t~i~~~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
++++ ..+| |+++.++|+++.++.|..+.+.+++.|+++|
T Consensus 100 ~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll 178 (199)
T PTZ00056 100 KNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELL 178 (199)
T ss_pred HcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 4443 1223 5666689999999999989888888887753
No 90
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.53 E-value=8.5e-14 Score=106.01 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=67.5
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC-------------hHHHHHcCC--CcccEEEEE-eCCeEE
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES-------------PSIATRYGI--RSIPTVMIF-KNGEKK 166 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~-------------~~l~~~~~i--~~~Pt~i~~-~~G~~~ 166 (186)
||+||++||++|++++|.+++++++|+ +.++.|+.|+. ..+.+.||+ .++|+.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999984 77777776633 236778995 699986666 699885
Q ss_pred -EEEeCCCCHHHHHHHHHhhC
Q 029863 167 -DTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 167 -~~~~G~~~~~~l~~~l~~~l 186 (186)
..+.|.++.++|++.|++++
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 57999999999998888764
No 91
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.5e-14 Score=118.86 Aligned_cols=97 Identities=34% Similarity=0.665 Sum_probs=85.6
Q ss_pred hhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEE
Q 029863 88 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 167 (186)
Q Consensus 88 ~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~ 167 (186)
...+.......+++++|+||++||++|+.+.|.+.+++..+.+.+.+..+|++.+.+++++|+|.++||+.+|.+|....
T Consensus 36 ~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 36 LDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPI 115 (383)
T ss_pred ccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCcee
Confidence 44555556777899999999999999999999999999999999999999999999999999999999999999985555
Q ss_pred EEeCCCCHHHHHHHHHh
Q 029863 168 TVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 168 ~~~G~~~~~~l~~~l~~ 184 (186)
.+.|..+.+.+..++..
T Consensus 116 ~~~~~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 116 DYSGPRNAESLAEFLIK 132 (383)
T ss_pred eccCcccHHHHHHHHHH
Confidence 68888888888877654
No 92
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.51 E-value=1.1e-13 Score=88.81 Aligned_cols=61 Identities=23% Similarity=0.470 Sum_probs=53.8
Q ss_pred EEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeE
Q 029863 102 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 102 vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~ 165 (186)
-++.||++||++|+++.+.++++++.+ +++.+..+|.+++++++++||++++||+++ +|+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~ 62 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKV 62 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEE
Confidence 367899999999999999999998765 459999999999999999999999999865 5553
No 93
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.51 E-value=6e-14 Score=98.96 Aligned_cols=70 Identities=21% Similarity=0.488 Sum_probs=54.9
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC--------------------ChHHHHHcCCCcccEE
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE--------------------SPSIATRYGIRSIPTV 157 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~--------------------~~~l~~~~~i~~~Pt~ 157 (186)
.++++||+||++||++|+...|.++++++++.+++.++.+..++ +.+++++|++.++|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 48999999999999999999999999999887777777663211 1246677888899997
Q ss_pred EEEe-CCeEEE
Q 029863 158 MIFK-NGEKKD 167 (186)
Q Consensus 158 i~~~-~G~~~~ 167 (186)
++++ +|+++.
T Consensus 100 ~vid~~G~v~~ 110 (114)
T cd02967 100 VLLDEAGVIAA 110 (114)
T ss_pred EEECCCCeEEe
Confidence 7775 787654
No 94
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.50 E-value=1e-13 Score=96.33 Aligned_cols=74 Identities=36% Similarity=0.852 Sum_probs=65.8
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhc-CceEEEEEeCCCC-----------------------hHHHHHcCCCc
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYV-GKLKCYKVNTDES-----------------------PSIATRYGIRS 153 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~v~~d~~-----------------------~~l~~~~~i~~ 153 (186)
.++++++.||++||++|+...+.+.++.+++. .++.++.+++|.+ ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 48999999999999999999999999999986 3599999999886 78999999999
Q ss_pred ccEEEEE-eCCeEEEEEeC
Q 029863 154 IPTVMIF-KNGEKKDTVIG 171 (186)
Q Consensus 154 ~Pt~i~~-~~G~~~~~~~G 171 (186)
+|+++++ ++|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9998777 48988887765
No 95
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.50 E-value=3.2e-13 Score=91.88 Aligned_cols=75 Identities=15% Similarity=0.263 Sum_probs=64.5
Q ss_pred CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q 029863 99 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 178 (186)
Q Consensus 99 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l 178 (186)
+...+..|+++||++|+...+.+++++++++ ++.+..+|.++.++++++|||+++||+++ ||+.+. .|..+.+++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e~ 86 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLEEI 86 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHHH
Confidence 4445889999999999999999999999876 59999999999999999999999999965 888765 476665554
No 96
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.50 E-value=1.5e-13 Score=105.06 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=65.9
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEE------EEEeCCCC-----------------------------
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKC------YKVNTDES----------------------------- 142 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~------~~v~~d~~----------------------------- 142 (186)
.||+.||+|||.||++|++.+|.++++.++ ++.+ +.||.|+.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 499999999999999999999999999653 3555 66666542
Q ss_pred hHHHHHcCCCcccE--EEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 029863 143 PSIATRYGIRSIPT--VMIFKNGEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 143 ~~l~~~~~i~~~Pt--~i~~~~G~~~~~~~G~~~~~~l~~~l~ 183 (186)
..++..||+.++|+ +++.++|+++.++.|..+.+++++.+.
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 23566789999975 355579999999999999888766443
No 97
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.49 E-value=1.8e-13 Score=101.88 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=76.3
Q ss_pred ccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCC-------CC----hHHHHH-c
Q 029863 83 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD-------ES----PSIATR-Y 149 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d-------~~----~~l~~~-~ 149 (186)
+.+++++.+.. ..-.||++||+||++||++|+..+|.+.++.++|.+ ++.++.++++ +. .+++++ +
T Consensus 7 l~~~~G~~~~l-~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~ 85 (153)
T TIGR02540 7 VKDARGRTVSL-EKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNY 85 (153)
T ss_pred eECCCCCEecH-HHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhc
Confidence 34444444422 233689999999999999999999999999999976 5889888851 11 223332 2
Q ss_pred CC--------------------------Cccc-----EEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 150 GI--------------------------RSIP-----TVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 150 ~i--------------------------~~~P-----t~i~~~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
++ .++| ++++.++|+++.++.|..+.++|.+.|+++|
T Consensus 86 ~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 86 GVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 22 1368 5666689999999999999999999998875
No 98
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.49 E-value=1.1e-13 Score=101.87 Aligned_cols=95 Identities=32% Similarity=0.623 Sum_probs=72.8
Q ss_pred cChhHHHHHHHhCCCcEEEEEECC-CCcccccchHHHHHHHHHhcCc-eEEEEEeCCC---------------------C
Q 029863 86 VTDATWQSLVLDSGSPVLVEFWAP-WCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDE---------------------S 142 (186)
Q Consensus 86 l~~~~~~~~~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~d~---------------------~ 142 (186)
.+++.+.- ..-.||++||+||++ ||++|+...|.+.+++++|.++ +.++.+..+. +
T Consensus 16 ~~g~~~~l-~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~ 94 (146)
T PF08534_consen 16 LDGKPVSL-SDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPD 94 (146)
T ss_dssp TTSEEEEG-GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETT
T ss_pred CCCCEecH-HHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechH
Confidence 44444432 224699999999999 9999999999999999997665 8887776543 3
Q ss_pred hHHHHHcCCC---------cccEEEE-EeCCeEEEEEeCCCC--HHHHHHH
Q 029863 143 PSIATRYGIR---------SIPTVMI-FKNGEKKDTVIGAVP--KSTLTTS 181 (186)
Q Consensus 143 ~~l~~~~~i~---------~~Pt~i~-~~~G~~~~~~~G~~~--~~~l~~~ 181 (186)
..+.++|++. ++|++++ .++|+++.+..|..+ ..++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~~ 145 (146)
T PF08534_consen 95 GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEAV 145 (146)
T ss_dssp SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHHH
T ss_pred HHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhhc
Confidence 4688899988 9998645 579999999999776 3444443
No 99
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.49 E-value=4.1e-13 Score=95.23 Aligned_cols=91 Identities=13% Similarity=0.200 Sum_probs=77.6
Q ss_pred HHhCCCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEEeCC--CChHHHHHcCCCcccEEEEEe--CCeEEE
Q 029863 95 VLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTD--ESPSIATRYGIRSIPTVMIFK--NGEKKD 167 (186)
Q Consensus 95 ~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v~~d--~~~~l~~~~~i~~~Pt~i~~~--~G~~~~ 167 (186)
...++|+++|+|+++||++|+.+...+ +++.+.+.++..++.+|.+ +..++++.|++.++|++++++ +|+++.
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~ 92 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLK 92 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeE
Confidence 456799999999999999999998754 6677777667788888876 456899999999999988885 699999
Q ss_pred EEeCCCCHHHHHHHHHhh
Q 029863 168 TVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 168 ~~~G~~~~~~l~~~l~~~ 185 (186)
++.|..+++++...|+++
T Consensus 93 ~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 93 VWSGNITPEDLLSQLIEF 110 (114)
T ss_pred EEcCCCCHHHHHHHHHHH
Confidence 999999999999888765
No 100
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.46 E-value=4.2e-13 Score=96.69 Aligned_cols=75 Identities=23% Similarity=0.482 Sum_probs=62.9
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCC---------------------------CChHHHHHc
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD---------------------------ESPSIATRY 149 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d---------------------------~~~~l~~~~ 149 (186)
.|+++||+||++||++|+...|.++++++++.+ ++.++.++.+ ....+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 689999999999999999999999999999985 4788777542 223477789
Q ss_pred CCCcccEEEEE-eCCeEEEEEeCC
Q 029863 150 GIRSIPTVMIF-KNGEKKDTVIGA 172 (186)
Q Consensus 150 ~i~~~Pt~i~~-~~G~~~~~~~G~ 172 (186)
++.++|+++++ ++|+++.++.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999997777 589999988885
No 101
>PLN02412 probable glutathione peroxidase
Probab=99.45 E-value=4.2e-13 Score=101.52 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=76.2
Q ss_pred ccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCc-eEEEEEeCCC-------C-hHH----HH
Q 029863 81 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDE-------S-PSI----AT 147 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~d~-------~-~~l----~~ 147 (186)
..+++++++.+.. ..-.||++||+||++||++|+...|.+.+++++|.++ +.++.|+++. . .++ ++
T Consensus 12 f~l~d~~G~~v~l-~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~ 90 (167)
T PLN02412 12 FTVKDIGGNDVSL-NQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCT 90 (167)
T ss_pred eEEECCCCCEEeH-HHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHH
Confidence 4444445544322 1225899999999999999999999999999999865 8999998642 2 121 22
Q ss_pred HcC----------------------------------CCcccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 148 RYG----------------------------------IRSIPTVMIF-KNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 148 ~~~----------------------------------i~~~Pt~i~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
+++ |...|+.+++ ++|+++.++.|..+.+++++.|+++|
T Consensus 91 ~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 91 RFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred ccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 222 3335775455 79999999999999999999988764
No 102
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=99.44 E-value=7.2e-13 Score=105.31 Aligned_cols=138 Identities=15% Similarity=0.285 Sum_probs=101.6
Q ss_pred cccCceeeccccCCccccCCCcceeeccCceeeeccccccccc--cccChhHHH----H-----HH--HhCCCcEEEEEE
Q 029863 41 EFKGLKVRPVRSFGSVSQGSSSSFRLRRGAQIVCEAQETAVEV--PAVTDATWQ----S-----LV--LDSGSPVLVEFW 107 (186)
Q Consensus 41 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~l~~~~~~----~-----~~--~~~~k~vvv~F~ 107 (186)
++..++.+|+++++++..++...|....|.+++.+..-+...- .+++.+... . .+ ..+++.+++.|.
T Consensus 36 ~v~~v~~sp~~Gl~ev~~~~~i~Y~~~dg~y~i~G~l~d~~~~~~~~~t~~~~~~~~~~l~~~~i~~g~~~~k~~I~vFt 115 (232)
T PRK10877 36 QSADIQPSPVAGMKTVLTESGVLYITDDGKHIIQGPMYDVSGTAPVNVTNQLLLKKLNALEKEMIVYKAPQEKHVITVFT 115 (232)
T ss_pred ceeEEccCCCCCeEEEEECCeEEEEcCCCCEEEeeeeEecCCCCCCChHHHHHHHHHHhhhhhcEEecCCCCCEEEEEEE
Confidence 4667778899999999988889999999999988775553322 233333221 1 01 124788899999
Q ss_pred CCCCcccccchHHHHHHHHHhcCceEEEEE--------------------------------------------eCCCCh
Q 029863 108 APWCGPCRMIHPIIDELSKQYVGKLKCYKV--------------------------------------------NTDESP 143 (186)
Q Consensus 108 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v--------------------------------------------~~d~~~ 143 (186)
++.||+|+++++.++++.+ .++.++.+ +++++.
T Consensus 116 Dp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v~~~~ 192 (232)
T PRK10877 116 DITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDIADHY 192 (232)
T ss_pred CCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchHHHhH
Confidence 9999999999999988754 22444333 112345
Q ss_pred HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 144 SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 144 ~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
++++++||+++||++ +.||+ .+.|..+.++|+++|++.
T Consensus 193 ~la~~lgi~gTPtiv-~~~G~---~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 193 ALGVQFGVQGTPAIV-LSNGT---LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred HHHHHcCCccccEEE-EcCCe---EeeCCCCHHHHHHHHHHc
Confidence 689999999999996 78896 468999999999999864
No 103
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.43 E-value=7.1e-13 Score=102.20 Aligned_cols=106 Identities=19% Similarity=0.381 Sum_probs=74.0
Q ss_pred ccccccccccccChhHHHHH-HHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCC-------------
Q 029863 75 EAQETAVEVPAVTDATWQSL-VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD------------- 140 (186)
Q Consensus 75 ~~~~~~~~v~~l~~~~~~~~-~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d------------- 140 (186)
+...+...+++.+++++.-. ....||+++|+||++||++|+...|.+.++.+++. +.++.++.+
T Consensus 49 G~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~ 126 (189)
T TIGR02661 49 GDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHE 126 (189)
T ss_pred CCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcC
Confidence 34445566666666655321 12368999999999999999999999999987754 344444321
Q ss_pred -------CChHHHHHcCCCcccEEEEE-eCCeEEEEEeCC-CCHHHHHHHHHh
Q 029863 141 -------ESPSIATRYGIRSIPTVMIF-KNGEKKDTVIGA-VPKSTLTTSIEK 184 (186)
Q Consensus 141 -------~~~~l~~~~~i~~~Pt~i~~-~~G~~~~~~~G~-~~~~~l~~~l~~ 184 (186)
...++++.|++.++|+.+++ ++|+++.+ |. ...+.+++++++
T Consensus 127 ~~~~~~~~~~~i~~~y~v~~~P~~~lID~~G~I~~~--g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 127 LGGERYVVSAEIGMAFQVGKIPYGVLLDQDGKIRAK--GLTNTREHLESLLEA 177 (189)
T ss_pred CCcceeechhHHHHhccCCccceEEEECCCCeEEEc--cCCCCHHHHHHHHHH
Confidence 13467889999999986565 68887654 43 456778887765
No 104
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.41 E-value=6.8e-13 Score=98.73 Aligned_cols=83 Identities=18% Similarity=0.276 Sum_probs=64.0
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC-------C----hHHHHH-cC--------------
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE-------S----PSIATR-YG-------------- 150 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~-------~----~~l~~~-~~-------------- 150 (186)
.||++||+||++||+ |+...|.+++++++|.+ ++.++.++++. . .+++++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 589999999999999 99999999999999975 48898887642 1 233332 33
Q ss_pred ---------CCccc------------EEEEEeCCeEEEEEeCCCCHHHHHHH
Q 029863 151 ---------IRSIP------------TVMIFKNGEKKDTVIGAVPKSTLTTS 181 (186)
Q Consensus 151 ---------i~~~P------------t~i~~~~G~~~~~~~G~~~~~~l~~~ 181 (186)
+.++| ++++.++|+++.++.|..+.++|++.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 12456 45555899999999999998887654
No 105
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.39 E-value=4.8e-12 Score=95.81 Aligned_cols=105 Identities=20% Similarity=0.394 Sum_probs=75.2
Q ss_pred cccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC-------C-----------
Q 029863 82 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE-------S----------- 142 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~-------~----------- 142 (186)
++...+++.+.......++++|++||++||+.|....+.+.++.+++.+ ++.++.++.|. .
T Consensus 8 ~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~ 87 (171)
T cd02969 8 SLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEH 87 (171)
T ss_pred cccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHC
Confidence 3344444433222223689999999999999999999999999999974 59999998764 1
Q ss_pred -----------hHHHHHcCCCcccEEEEE-eCCeEEEEEe---------CCCCHHHHHHHHHhhC
Q 029863 143 -----------PSIATRYGIRSIPTVMIF-KNGEKKDTVI---------GAVPKSTLTTSIEKFL 186 (186)
Q Consensus 143 -----------~~l~~~~~i~~~Pt~i~~-~~G~~~~~~~---------G~~~~~~l~~~l~~~l 186 (186)
..+++.|++..+|+++++ ++|+++.+.. +..+.+++.+.|+.+|
T Consensus 88 ~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 152 (171)
T cd02969 88 GYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALL 152 (171)
T ss_pred CCCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHH
Confidence 136778999999987777 4888775421 2234577887777653
No 106
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.3e-12 Score=110.97 Aligned_cols=104 Identities=31% Similarity=0.531 Sum_probs=93.8
Q ss_pred cccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhc--CceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 029863 82 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYV--GKLKCYKVNTDESPSIATRYGIRSIPTVMI 159 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~ 159 (186)
.+.+++..++...+......++|.||+|||++|+.++|.+++++..+. ..+.+..+|++.+..++.+++|+++||+++
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 477888899988888889999999999999999999999999999885 569999999998999999999999999999
Q ss_pred EeCCeE-EEEEeCCCCHHHHHHHHHhh
Q 029863 160 FKNGEK-KDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 160 ~~~G~~-~~~~~G~~~~~~l~~~l~~~ 185 (186)
|++|.. ...+.|..+.+.+..++++.
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHHhh
Confidence 998888 77788889999999988753
No 107
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=3.3e-13 Score=116.36 Aligned_cols=81 Identities=23% Similarity=0.512 Sum_probs=72.8
Q ss_pred ccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCc---eEEEEEeCC--CChHHHHHcCCCccc
Q 029863 81 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK---LKCYKVNTD--ESPSIATRYGIRSIP 155 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~v~~d--~~~~l~~~~~i~~~P 155 (186)
..+..++.++|...+..+.+-.+|+||++|||+|+.++|.++++++..... |.++.|||. +|..+|++|+|+++|
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 677889999999988888889999999999999999999999999876553 889999985 467899999999999
Q ss_pred EEEEEe
Q 029863 156 TVMIFK 161 (186)
Q Consensus 156 t~i~~~ 161 (186)
++.+|+
T Consensus 119 tlryf~ 124 (606)
T KOG1731|consen 119 TLRYFP 124 (606)
T ss_pred eeeecC
Confidence 999995
No 108
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.34 E-value=7.8e-12 Score=95.92 Aligned_cols=106 Identities=23% Similarity=0.239 Sum_probs=75.0
Q ss_pred cccccccChhHHHHHHHhCCCcE-EEEEECCCCcccccchHHHHHHHHHhcCc-eEEEEEeCCC-------C-h---HH-
Q 029863 80 AVEVPAVTDATWQSLVLDSGSPV-LVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDE-------S-P---SI- 145 (186)
Q Consensus 80 ~~~v~~l~~~~~~~~~~~~~k~v-vv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~d~-------~-~---~l- 145 (186)
...+++++++.+.- ..-.||++ |+.+|++||++|+..+|.+++++++|.++ +.++.++++. + . .+
T Consensus 22 ~f~l~d~~G~~vsL-s~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~ 100 (183)
T PTZ00256 22 EFEAIDIDGQLVQL-SKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYV 100 (183)
T ss_pred ceEeEcCCCCEEeH-HHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHH
Confidence 34445555544422 22257765 45669999999999999999999999764 8899987631 1 1 11
Q ss_pred HHHc------------------------------------CCCcccE----EEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 146 ATRY------------------------------------GIRSIPT----VMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 146 ~~~~------------------------------------~i~~~Pt----~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
.+++ ++.++|+ +++.++|+++.++.|..+.+.+++.|+++
T Consensus 101 ~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~l 180 (183)
T PTZ00256 101 QKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKL 180 (183)
T ss_pred HHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 1121 3446794 76778999999999999999999888876
Q ss_pred C
Q 029863 186 L 186 (186)
Q Consensus 186 l 186 (186)
|
T Consensus 181 l 181 (183)
T PTZ00256 181 L 181 (183)
T ss_pred h
Confidence 4
No 109
>smart00594 UAS UAS domain.
Probab=99.30 E-value=2.5e-11 Score=87.24 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=71.9
Q ss_pred HHhCCCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEEeCC--CChHHHHHcCCCcccEEEEE-eCC-----
Q 029863 95 VLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTD--ESPSIATRYGIRSIPTVMIF-KNG----- 163 (186)
Q Consensus 95 ~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v~~d--~~~~l~~~~~i~~~Pt~i~~-~~G----- 163 (186)
...++|+++|+|+++||++|+.+...+ .++.+....++.++.+|.+ +..+++.+|+++++|+++++ .+|
T Consensus 23 Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~ 102 (122)
T smart00594 23 ASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVI 102 (122)
T ss_pred HHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeE
Confidence 455789999999999999999999865 5666666667778778765 45679999999999998888 455
Q ss_pred eEEEEEeCCCCHHHHHHHH
Q 029863 164 EKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 164 ~~~~~~~G~~~~~~l~~~l 182 (186)
+.+.++.|..+.++|...|
T Consensus 103 ~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 103 EWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEeccccCCCCHHHHHHhh
Confidence 4577899999999988776
No 110
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.30 E-value=7.5e-12 Score=90.52 Aligned_cols=79 Identities=13% Similarity=0.233 Sum_probs=56.7
Q ss_pred HHHhCCCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEEeCCCC-hHHHHHcCCCcccEEEEE-eCCeEEEE
Q 029863 94 LVLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDES-PSIATRYGIRSIPTVMIF-KNGEKKDT 168 (186)
Q Consensus 94 ~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v~~d~~-~~l~~~~~i~~~Pt~i~~-~~G~~~~~ 168 (186)
...+++|+++|+|++.||++|+.++..+ .++.+....++..+.++.|.. .+.. ..| .++||++|+ .+|+++.+
T Consensus 18 ~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~vi~~ 95 (130)
T cd02960 18 KAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTVRAD 95 (130)
T ss_pred HHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCCccc
Confidence 3566799999999999999999999876 455555544555556665422 1111 234 689999888 58999888
Q ss_pred EeCCCC
Q 029863 169 VIGAVP 174 (186)
Q Consensus 169 ~~G~~~ 174 (186)
+.|..+
T Consensus 96 i~Gy~~ 101 (130)
T cd02960 96 ITGRYS 101 (130)
T ss_pred cccccc
Confidence 888653
No 111
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.30 E-value=1.2e-11 Score=85.20 Aligned_cols=85 Identities=46% Similarity=1.069 Sum_probs=73.1
Q ss_pred CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCC-CChHHHHHcC--CCcccEEEEEeCCeEEEEEeC--CC
Q 029863 99 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD-ESPSIATRYG--IRSIPTVMIFKNGEKKDTVIG--AV 173 (186)
Q Consensus 99 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d-~~~~l~~~~~--i~~~Pt~i~~~~G~~~~~~~G--~~ 173 (186)
++++++.||++||++|+.+.|.+.++++++...+.++.+|.. ..+++...|+ +..+|+++++.+|+.+....+ ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 889999999999999999999999999999877999999997 7899999999 999999999988877656666 56
Q ss_pred CHHHHHHHHH
Q 029863 174 PKSTLTTSIE 183 (186)
Q Consensus 174 ~~~~l~~~l~ 183 (186)
+...+.....
T Consensus 112 ~~~~~~~~~~ 121 (127)
T COG0526 112 PKEALIDALG 121 (127)
T ss_pred CHHHHHHHhc
Confidence 6666655443
No 112
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.29 E-value=2.5e-11 Score=88.45 Aligned_cols=85 Identities=16% Similarity=0.265 Sum_probs=69.6
Q ss_pred CCCcEEEEEE-CCCCcccccchHHHHHHHHHhcC-ceEEEEEeCC---------------------CChHHHHHcCCCcc
Q 029863 98 SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD---------------------ESPSIATRYGIRSI 154 (186)
Q Consensus 98 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d---------------------~~~~l~~~~~i~~~ 154 (186)
.|++++|+|| +.||+.|....+.+.++.+++.+ ++.++.|..| .+..+++.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4899999999 58999999999999999988865 4778777654 23357888999888
Q ss_pred ---------cEEEEE-eCCeEEEEEeCCCCHHHHHHHH
Q 029863 155 ---------PTVMIF-KNGEKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 155 ---------Pt~i~~-~~G~~~~~~~G~~~~~~l~~~l 182 (186)
|+.+++ ++|+++.++.|..+.+.+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 887666 4899999999998888877655
No 113
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.27 E-value=1.5e-11 Score=106.99 Aligned_cols=101 Identities=15% Similarity=0.451 Sum_probs=80.3
Q ss_pred cccChh-HHHHHHHhC-CCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEEeCCCC----hHHHHHcCCCcc
Q 029863 84 PAVTDA-TWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDES----PSIATRYGIRSI 154 (186)
Q Consensus 84 ~~l~~~-~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v~~d~~----~~l~~~~~i~~~ 154 (186)
+.++.. ++++...+. +|||+|+|||+||-.||++++.. .++..+..+ +...++|..++ .++.++||+-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 445444 676654433 45999999999999999999977 345555554 88999987554 467889999999
Q ss_pred cEEEEEe-CCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 155 PTVMIFK-NGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 155 Pt~i~~~-~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
|++++|. +|++.....|.++.+.+.+++++.
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 9999997 888877899999999999999864
No 114
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=99.26 E-value=2.3e-11 Score=94.27 Aligned_cols=131 Identities=19% Similarity=0.291 Sum_probs=89.8
Q ss_pred CceeeccccCCccccCCCcceeeccCceeeecccccccccc-ccChhH--------HHHH--------HHhCCCcEEEEE
Q 029863 44 GLKVRPVRSFGSVSQGSSSSFRLRRGAQIVCEAQETAVEVP-AVTDAT--------WQSL--------VLDSGSPVLVEF 106 (186)
Q Consensus 44 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~--------~~~~--------~~~~~k~vvv~F 106 (186)
.+..+|+.+++++..++...|....|..++.+...+...-. .++.+. |+++ ....+++.++.|
T Consensus 5 ~v~~sp~~Gl~~v~~~~~~~y~~~dg~~~i~G~l~d~~~~~~~~t~~~~~~~~~~~~~~l~~~~~i~~g~~~~~~~i~~f 84 (197)
T cd03020 5 SVFKTPVAGLYEVVTGGGVLYTDDDGRYLIQGNLYDAKGRKDDLTEARLAQLNAIDLSALPLDDAIVYGKGNGKRVVYVF 84 (197)
T ss_pred eeccCCCCCeEEEEECCEEEEEcCCCCEEEEeEEEEccCCCCChhHHHHHHhhhhhhhhCCcccCeEEcCCCCCEEEEEE
Confidence 34556788888888878888888888888876644432221 222222 2221 112367999999
Q ss_pred ECCCCcccccchHHHHHHHHHhcCceEEEEE---------------------------------------------eCCC
Q 029863 107 WAPWCGPCRMIHPIIDELSKQYVGKLKCYKV---------------------------------------------NTDE 141 (186)
Q Consensus 107 ~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v---------------------------------------------~~d~ 141 (186)
.+++|++|+++++.+.+ ..+++.+..+ ++++
T Consensus 85 ~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~~i~~ 160 (197)
T cd03020 85 TDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDNPVAA 160 (197)
T ss_pred ECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCchHHH
Confidence 99999999999999987 2234444333 1123
Q ss_pred ChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q 029863 142 SPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 142 ~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l 182 (186)
+..+++++||+++|+++ ++||+. +.|..+.++|.++|
T Consensus 161 ~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 161 NLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred HHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 34688899999999996 888864 67998888887764
No 115
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.19 E-value=3.7e-11 Score=80.27 Aligned_cols=66 Identities=27% Similarity=0.529 Sum_probs=52.8
Q ss_pred HHhCCCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEe
Q 029863 95 VLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK 161 (186)
Q Consensus 95 ~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~ 161 (186)
..+++|+++|+|+++||++|+.+...+ .++.+.+.+++..+.+|.++.....+.++ .++|+++|++
T Consensus 13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 456799999999999999999999888 56666566779999999987655443222 6799998875
No 116
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.17 E-value=2.9e-10 Score=84.51 Aligned_cols=105 Identities=12% Similarity=0.168 Sum_probs=74.8
Q ss_pred ccccccccChhHHHHHHHhCCCcEEEEEECC-CCcccccchHHHHHHHHHhcC-ceEEEEEeCC----------------
Q 029863 79 TAVEVPAVTDATWQSLVLDSGSPVLVEFWAP-WCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD---------------- 140 (186)
Q Consensus 79 ~~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d---------------- 140 (186)
....+.+++++.+.- ..-.||++||+||+. ||+.|....+.+.++.+++.+ ++.++.|+.|
T Consensus 11 p~f~l~~~~G~~~~l-~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~ 89 (154)
T PRK09437 11 PKFSLPDQDGEQVSL-TDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNF 89 (154)
T ss_pred CCcEeeCCCCCEEeH-HHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCC
Confidence 344455555544432 223689999999976 688899999999999998865 4888888664
Q ss_pred -----CChHHHHHcCCCcc------------cEEEEE-eCCeEEEEEeCCCCHHHHHHHHHh
Q 029863 141 -----ESPSIATRYGIRSI------------PTVMIF-KNGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 141 -----~~~~l~~~~~i~~~------------Pt~i~~-~~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
....+++.||+... |+.+++ ++|+++..+.|..+.+.+.+.+++
T Consensus 90 ~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~ 151 (154)
T PRK09437 90 TLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDY 151 (154)
T ss_pred eEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHH
Confidence 23357788888654 554455 699999999998777776665554
No 117
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.16 E-value=2.3e-10 Score=86.51 Aligned_cols=73 Identities=12% Similarity=0.233 Sum_probs=59.1
Q ss_pred CCCcEEEEEECCC-CcccccchHHHHHHHHHhcCceEEEEEeCCC-----------------------ChHHHHHcCCCc
Q 029863 98 SGSPVLVEFWAPW-CGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-----------------------SPSIATRYGIRS 153 (186)
Q Consensus 98 ~~k~vvv~F~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~-----------------------~~~l~~~~~i~~ 153 (186)
.||++||+||+.| |++|....+.++++++++. ++.++.++.|. ...+++.||+..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 5889999999999 9999999999999999984 58888776641 236788899987
Q ss_pred cc---------EEEEE-eCCeEEEEEeC
Q 029863 154 IP---------TVMIF-KNGEKKDTVIG 171 (186)
Q Consensus 154 ~P---------t~i~~-~~G~~~~~~~G 171 (186)
.| +.+++ ++|+++....+
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEEC
Confidence 77 75555 69998887754
No 118
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.14 E-value=3.9e-10 Score=82.66 Aligned_cols=84 Identities=11% Similarity=0.205 Sum_probs=64.5
Q ss_pred CCCcEEEEEECCC-CcccccchHHHHHHHHHhcCceEEEEEeCCC----------------------C-hHHHHHcCCCc
Q 029863 98 SGSPVLVEFWAPW-CGPCRMIHPIIDELSKQYVGKLKCYKVNTDE----------------------S-PSIATRYGIRS 153 (186)
Q Consensus 98 ~~k~vvv~F~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~----------------------~-~~l~~~~~i~~ 153 (186)
.||++||+||+.| |++|+...+.+.++.+++. ++.++.|+.|. . ..+++.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 5889999999998 6999999999999999986 58888887752 1 45778888853
Q ss_pred ------ccEEEEE-eCCeEEEEEeCC--CCHHHHHHHH
Q 029863 154 ------IPTVMIF-KNGEKKDTVIGA--VPKSTLTTSI 182 (186)
Q Consensus 154 ------~Pt~i~~-~~G~~~~~~~G~--~~~~~l~~~l 182 (186)
.|+.+++ ++|+++....|. ....++++.|
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 5776566 599999988875 3344555544
No 119
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.13 E-value=1.9e-10 Score=88.18 Aligned_cols=103 Identities=14% Similarity=0.217 Sum_probs=72.8
Q ss_pred cccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC-------C----hHHHH-H
Q 029863 82 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE-------S----PSIAT-R 148 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~-------~----~~l~~-~ 148 (186)
.+.+++++.+.- ..-.||++||.|||+||++|+ ..+.|++++++|.+ ++.++.++++. . .++++ +
T Consensus 9 ~~~~~~G~~v~L-s~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~ 86 (183)
T PRK10606 9 VVTTIDGEVTTL-EKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTT 86 (183)
T ss_pred EeECCCCCEEeH-HHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHc
Confidence 344444443322 233689999999999999997 58999999999976 49999998742 1 23454 4
Q ss_pred cCCC-----------------------ccc--------------------------------EEEEEeCCeEEEEEeCCC
Q 029863 149 YGIR-----------------------SIP--------------------------------TVMIFKNGEKKDTVIGAV 173 (186)
Q Consensus 149 ~~i~-----------------------~~P--------------------------------t~i~~~~G~~~~~~~G~~ 173 (186)
||+. ..| -+++.++|+++.|+....
T Consensus 87 ~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~ 166 (183)
T PRK10606 87 WGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDM 166 (183)
T ss_pred cCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCC
Confidence 6543 233 356668999999998876
Q ss_pred CHHH--HHHHHHhhC
Q 029863 174 PKST--LTTSIEKFL 186 (186)
Q Consensus 174 ~~~~--l~~~l~~~l 186 (186)
.+++ |++.|+++|
T Consensus 167 ~p~~~~i~~~i~~~l 181 (183)
T PRK10606 167 TPEDPIVMESIKLAL 181 (183)
T ss_pred CCCHHHHHHHHHHHh
Confidence 6555 888888764
No 120
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.13 E-value=1.8e-10 Score=81.95 Aligned_cols=87 Identities=25% Similarity=0.556 Sum_probs=65.1
Q ss_pred cccccccChhHHHHHHHhCCCcEEEEEECC-CCcccccchHHHHHHHHHhcC-ceEEEEEeCCC----------------
Q 029863 80 AVEVPAVTDATWQSLVLDSGSPVLVEFWAP-WCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE---------------- 141 (186)
Q Consensus 80 ~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~---------------- 141 (186)
...+...++..+.. ..-.|+++||.||.. ||++|+...+.+.++.+++++ ++.++.|+.|.
T Consensus 7 ~f~l~~~~g~~~~l-~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~ 85 (124)
T PF00578_consen 7 DFTLTDSDGKTVSL-SDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFP 85 (124)
T ss_dssp CEEEETTTSEEEEG-GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSE
T ss_pred CcEeECCCCCEEEH-HHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccc
Confidence 34444444444422 122689999999999 999999999999999999886 49999997753
Q ss_pred -----ChHHHHHcCCC------cccEEEEE-eCCeEEE
Q 029863 142 -----SPSIATRYGIR------SIPTVMIF-KNGEKKD 167 (186)
Q Consensus 142 -----~~~l~~~~~i~------~~Pt~i~~-~~G~~~~ 167 (186)
+..+++.|++. .+|+++++ ++|+++.
T Consensus 86 ~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 86 VLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp EEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred cccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 33688889998 89987666 4776654
No 121
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.12 E-value=2.1e-10 Score=84.79 Aligned_cols=70 Identities=27% Similarity=0.635 Sum_probs=60.0
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCc---eEEEEEeCCCCh-------------------------HHHHHc
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK---LKCYKVNTDESP-------------------------SIATRY 149 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~v~~d~~~-------------------------~l~~~~ 149 (186)
.||.|.++|.|-||++||.+-|.+.++.++..++ +.++.|+.|.+. ++.++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5899999999999999999999999999998877 888888877543 477889
Q ss_pred CCCcccEEEEEe-CCeEEE
Q 029863 150 GIRSIPTVMIFK-NGEKKD 167 (186)
Q Consensus 150 ~i~~~Pt~i~~~-~G~~~~ 167 (186)
+|.++|++++.+ +|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 999999987775 886554
No 122
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.10 E-value=1e-09 Score=83.26 Aligned_cols=87 Identities=14% Similarity=0.257 Sum_probs=66.2
Q ss_pred CCCcEEEEEE-CCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 029863 98 SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE----------------------------SPSIAT 147 (186)
Q Consensus 98 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~----------------------------~~~l~~ 147 (186)
.||++||+|| +.||++|....+.+.++++++.+ ++.++.|+.|. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5799999999 89999999999999999999865 47777776542 224667
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEEeCCC----CHHHHHHHHHh
Q 029863 148 RYGIR------SIPTVMIF-KNGEKKDTVIGAV----PKSTLTTSIEK 184 (186)
Q Consensus 148 ~~~i~------~~Pt~i~~-~~G~~~~~~~G~~----~~~~l~~~l~~ 184 (186)
.||+. ..|+.+++ ++|+++..+.+.. +.+++.+.|+.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 78886 46776666 5999888886643 45667777654
No 123
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=99.09 E-value=6.8e-10 Score=89.26 Aligned_cols=132 Identities=11% Similarity=0.222 Sum_probs=90.4
Q ss_pred eccccCCcccc-CCCcceeeccCceeeeccccccccccccChhHHHHH------------------H-H--hCCCcEEEE
Q 029863 48 RPVRSFGSVSQ-GSSSSFRLRRGAQIVCEAQETAVEVPAVTDATWQSL------------------V-L--DSGSPVLVE 105 (186)
Q Consensus 48 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~------------------~-~--~~~k~vvv~ 105 (186)
+++.++..+.. .+...|....|.+++.+...+.. -.++|++...+. + . ..++.+|+.
T Consensus 45 ~~l~g~~~~~~~~~~i~Y~t~dg~y~i~G~l~d~~-~~nlT~~~~~~~~~~~~~~~~~~~l~~~~~i~~g~~~ak~~I~v 123 (251)
T PRK11657 45 GGLKGYAAKYQDMGVTIYLTPDGKHAISGYMYDEK-GENLSEALLEKEVYAPMGREMWQRLEQSHWILDGKADAPRIVYV 123 (251)
T ss_pred CCceEEEEEeCCCceEEEEcCCCCEEEEEEEEcCC-CCccCHHHHHHHhcCCccHHHHHHhhccCCccccCCCCCeEEEE
Confidence 34556665554 34467888888888887766543 346666544431 1 1 135678999
Q ss_pred EECCCCcccccchHHHHHHHHHhcCceEEEEEeC----------------------------------------------
Q 029863 106 FWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNT---------------------------------------------- 139 (186)
Q Consensus 106 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~---------------------------------------------- 139 (186)
|.++.||+|+++++.+.++.+. +++.+..+..
T Consensus 124 FtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~~~~~~~ 201 (251)
T PRK11657 124 FADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPASIPAAV 201 (251)
T ss_pred EECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCccccCCHHH
Confidence 9999999999999999887654 3455544411
Q ss_pred ----CCChHHHHHcCCCcccEEEEEe-CCeEEEEEeCCCCHHHHHHHHH
Q 029863 140 ----DESPSIATRYGIRSIPTVMIFK-NGEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 140 ----d~~~~l~~~~~i~~~Pt~i~~~-~G~~~~~~~G~~~~~~l~~~l~ 183 (186)
+++..+++++||+++|++++-+ +| .+..+.|..+.++|.+.|.
T Consensus 202 ~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 202 RKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 0122477889999999996654 35 4446899999999998875
No 124
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.1e-09 Score=80.55 Aligned_cols=89 Identities=18% Similarity=0.351 Sum_probs=74.3
Q ss_pred HhCCCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEEeCCC----------------ChHHHHHcCCCcccE
Q 029863 96 LDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDE----------------SPSIATRYGIRSIPT 156 (186)
Q Consensus 96 ~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v~~d~----------------~~~l~~~~~i~~~Pt 156 (186)
...+|..++.|-.+.|++|..+...+ .++.+-+.+++.++.+++.. ..++++.|+++++||
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPt 118 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPT 118 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCce
Confidence 34588999999999999999999877 56666677778888887642 248999999999999
Q ss_pred EEEEe-CCeEEEEEeCCCCHHHHHHHHHh
Q 029863 157 VMIFK-NGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 157 ~i~~~-~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
+++|+ +|+.+..++|.+|++++...++-
T Consensus 119 fvFfdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 119 FVFFDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred EEEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 98885 88999999999999998877653
No 125
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.08 E-value=8.2e-10 Score=85.00 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=65.2
Q ss_pred CCCcEEEEEE-CCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC-------------------------ChHHHHHcC
Q 029863 98 SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE-------------------------SPSIATRYG 150 (186)
Q Consensus 98 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~-------------------------~~~l~~~~~ 150 (186)
.||++||+|| +.||++|....+.+.++.+++.+ ++.++.|+.|. +..+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5889999999 99999999999999999988864 47777776653 235778899
Q ss_pred CC------cccEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHh
Q 029863 151 IR------SIPTVMIF-KNGEKKDTVIGA----VPKSTLTTSIEK 184 (186)
Q Consensus 151 i~------~~Pt~i~~-~~G~~~~~~~G~----~~~~~l~~~l~~ 184 (186)
+. ..|+.+++ ++|+++....+. ...+++.+.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 86 35865555 699988876542 245666665543
No 126
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.07 E-value=7.6e-10 Score=71.30 Aligned_cols=69 Identities=17% Similarity=0.504 Sum_probs=54.3
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPS----IATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 178 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~----l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l 178 (186)
+..|+++||++|++..+.+++. ++.+..+|+++++. +.+.+|+.++|++++. |+. +.| .+.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHHHH
Confidence 5679999999999999888763 48889999987754 4567999999999763 643 666 477888
Q ss_pred HHHHH
Q 029863 179 TTSIE 183 (186)
Q Consensus 179 ~~~l~ 183 (186)
.++|+
T Consensus 70 ~~~i~ 74 (74)
T TIGR02196 70 DQLLE 74 (74)
T ss_pred HHHhC
Confidence 88764
No 127
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.7e-10 Score=88.98 Aligned_cols=91 Identities=25% Similarity=0.430 Sum_probs=75.4
Q ss_pred cccccc-ChhHHHHHHHh-CCCcEEEEEECCCCcccccchHHHHHHHHHhcCc-eEEEEEeCCCChHHHHHcCC------
Q 029863 81 VEVPAV-TDATWQSLVLD-SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDESPSIATRYGI------ 151 (186)
Q Consensus 81 ~~v~~l-~~~~~~~~~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~d~~~~l~~~~~i------ 151 (186)
.++..+ +++.+++.... ..+.+++.|++.|.+.|+...|.+.+|..+|..+ ++|.++|+..-++.+++|+|
T Consensus 124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~s 203 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGS 203 (265)
T ss_pred hheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccc
Confidence 344555 44555544332 3568899999999999999999999999999764 99999999999999999998
Q ss_pred CcccEEEEEeCCeEEEEEeC
Q 029863 152 RSIPTVMIFKNGEKKDTVIG 171 (186)
Q Consensus 152 ~~~Pt~i~~~~G~~~~~~~G 171 (186)
+.+||+++|++|+++.|...
T Consensus 204 rQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 204 RQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred ccCCeEEEEccchhhhcCcc
Confidence 47899999999999887764
No 128
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.06 E-value=1.3e-09 Score=80.17 Aligned_cols=86 Identities=14% Similarity=0.320 Sum_probs=63.3
Q ss_pred CC-CcEEEEEE-CCCCcccccchHHHHHHHHHhcC-ceEEEEEeCC---------------------CC--hHHHHHcCC
Q 029863 98 SG-SPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD---------------------ES--PSIATRYGI 151 (186)
Q Consensus 98 ~~-k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d---------------------~~--~~l~~~~~i 151 (186)
.| ++++|.|| ++||+.|....|.++++++++.+ ++.++.|+.| .. ..+++.||+
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~ 105 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGV 105 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCC
Confidence 35 88888887 99999999999999999999864 4778777553 23 567888898
Q ss_pred C----ccc--EEEEE-eCCeEEEEEeCCC--C--HHHHHHHHH
Q 029863 152 R----SIP--TVMIF-KNGEKKDTVIGAV--P--KSTLTTSIE 183 (186)
Q Consensus 152 ~----~~P--t~i~~-~~G~~~~~~~G~~--~--~~~l~~~l~ 183 (186)
. ++| +.+++ ++|+++.++.|.. . ..++.+.|+
T Consensus 106 ~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 106 FDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred ccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 7 333 65555 6999999888864 2 444555443
No 129
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.02 E-value=2e-09 Score=78.95 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=54.6
Q ss_pred CCCcE-EEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC---------------------ChHHHHHcCCC--
Q 029863 98 SGSPV-LVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE---------------------SPSIATRYGIR-- 152 (186)
Q Consensus 98 ~~k~v-vv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~---------------------~~~l~~~~~i~-- 152 (186)
.++++ |+.||+.||++|+...+.|.++.+++.+ ++.++.|+.|. +..+.+.||+.
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~ 101 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRS 101 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceec
Confidence 34555 5555699999999999999999999864 48888887653 33577788884
Q ss_pred ---------------------------cccEEEEE-eCCeEEEEEeC
Q 029863 153 ---------------------------SIPTVMIF-KNGEKKDTVIG 171 (186)
Q Consensus 153 ---------------------------~~Pt~i~~-~~G~~~~~~~G 171 (186)
..|+.+++ ++|+++..+.|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 102 LPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred CcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 68876666 47877766554
No 130
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.02 E-value=5.1e-10 Score=81.20 Aligned_cols=96 Identities=18% Similarity=0.397 Sum_probs=56.9
Q ss_pred cChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHc---CCCcccEEEEEe-
Q 029863 86 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRY---GIRSIPTVMIFK- 161 (186)
Q Consensus 86 l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~---~i~~~Pt~i~~~- 161 (186)
++++....+....++..++.|..+|||.|.+..|.+.++++..+ ++.+-.+..|+++++..+| |.+.+|++++++
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 34444444333345667888999999999999999999999876 5888888888888877765 678999999995
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHh
Q 029863 162 NGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 162 ~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
+|+++.++... | +.+.+++++
T Consensus 107 ~~~~lg~wger-P-~~~~~~~~~ 127 (129)
T PF14595_consen 107 DGKELGRWGER-P-KEVQELVDE 127 (129)
T ss_dssp T--EEEEEESS---HHHH-----
T ss_pred CCCEeEEEcCC-C-HHHhhcccc
Confidence 67888766543 3 334444443
No 131
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.02 E-value=9.9e-10 Score=80.12 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=38.6
Q ss_pred CCCcEEEEEECCCCcc-cccchHHHHHHHHHhcC----ceEEEEEeCC
Q 029863 98 SGSPVLVEFWAPWCGP-CRMIHPIIDELSKQYVG----KLKCYKVNTD 140 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~-C~~~~p~l~~l~~~~~~----~v~~~~v~~d 140 (186)
.++++||.||++||++ |....+.+.++.+++.+ ++.++.|+.|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6899999999999998 99999999999999875 3889888765
No 132
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.02 E-value=1.6e-09 Score=70.75 Aligned_cols=70 Identities=23% Similarity=0.460 Sum_probs=53.1
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHc-----CCCcccEEEEEeCCeEEEEEeCCCCHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRY-----GIRSIPTVMIFKNGEKKDTVIGAVPKST 177 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~-----~i~~~Pt~i~~~~G~~~~~~~G~~~~~~ 177 (186)
++.||++||++|+++.+.+.++ .+.+..+|+++++.....+ ++.++|++ ++++|+.+. .....+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 5679999999999999999876 3566788998887766664 89999997 677885433 345556
Q ss_pred HHHHHH
Q 029863 178 LTTSIE 183 (186)
Q Consensus 178 l~~~l~ 183 (186)
+.+.|+
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 666554
No 133
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.02 E-value=1.1e-09 Score=88.50 Aligned_cols=103 Identities=17% Similarity=0.411 Sum_probs=77.7
Q ss_pred ccccccC-hhHHHHHHHhC--CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 029863 81 VEVPAVT-DATWQSLVLDS--GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTV 157 (186)
Q Consensus 81 ~~v~~l~-~~~~~~~~~~~--~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~ 157 (186)
..+.+++ ++.|.+.+... +..|||.||.+.++.|..+...|..|+.+|+. ++|++|.....+ +...|.+..+||+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPtl 202 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPTL 202 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCEE
Confidence 3455664 46666655443 45799999999999999999999999999987 999999987765 7889999999999
Q ss_pred EEEeCCeEEEEEeCCC-------CHHHHHHHHHhh
Q 029863 158 MIFKNGEKKDTVIGAV-------PKSTLTTSIEKF 185 (186)
Q Consensus 158 i~~~~G~~~~~~~G~~-------~~~~l~~~l~~~ 185 (186)
++|++|..+..+.|.. ..++|+.+|.++
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999999998742 355777777653
No 134
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.01 E-value=2.6e-09 Score=77.59 Aligned_cols=77 Identities=18% Similarity=0.364 Sum_probs=61.4
Q ss_pred CCCcEEEEEE-CCCCcccccchHHHHHHHHHhc-CceEEEEEeCCC----------------------ChHHHHHcCCCc
Q 029863 98 SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYV-GKLKCYKVNTDE----------------------SPSIATRYGIRS 153 (186)
Q Consensus 98 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~v~~d~----------------------~~~l~~~~~i~~ 153 (186)
.+++++|+|| +.||++|....+.+.++++++. .++.++.|+.|. ...+++.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 6899999999 7899999999999999999984 348888876642 235778888877
Q ss_pred cc---------EEEEE-eCCeEEEEEeCCCC
Q 029863 154 IP---------TVMIF-KNGEKKDTVIGAVP 174 (186)
Q Consensus 154 ~P---------t~i~~-~~G~~~~~~~G~~~ 174 (186)
.| +++++ ++|+++.++.|..+
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 66 55555 58999999998765
No 135
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.98 E-value=3.5e-09 Score=79.27 Aligned_cols=92 Identities=16% Similarity=0.313 Sum_probs=63.9
Q ss_pred cccccccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEEeCCCChHHHHHc---
Q 029863 76 AQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDESPSIATRY--- 149 (186)
Q Consensus 76 ~~~~~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v~~d~~~~l~~~~--- 149 (186)
...........+++.++. ..+++|+++|.++.+||..|+.++... .++++.+..++.-+++|.|+.+++...|
T Consensus 15 ha~~~V~W~~w~~ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~ 93 (163)
T PF03190_consen 15 HAHNPVNWQPWGEEALEK-AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNA 93 (163)
T ss_dssp TTTSSS--B-SSHHHHHH-HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHH
T ss_pred hccCCCCcccCCHHHHHH-HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHH
Confidence 445556777778888876 467799999999999999999999754 6677777777899999999999999998
Q ss_pred -----CCCcccEEEEE-eCCeEEEE
Q 029863 150 -----GIRSIPTVMIF-KNGEKKDT 168 (186)
Q Consensus 150 -----~i~~~Pt~i~~-~~G~~~~~ 168 (186)
|..|.|+.+|+ .+|+.+..
T Consensus 94 ~~~~~~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 94 VQAMSGSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp HHHHHS---SSEEEEE-TTS-EEEE
T ss_pred HHHhcCCCCCCceEEECCCCCeeee
Confidence 88999987666 58887754
No 136
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.98 E-value=5.1e-09 Score=68.96 Aligned_cols=72 Identities=24% Similarity=0.576 Sum_probs=56.4
Q ss_pred EEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeC-CCCHHHHHHHHH
Q 029863 105 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIG-AVPKSTLTTSIE 183 (186)
Q Consensus 105 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G-~~~~~~l~~~l~ 183 (186)
.++.++|++|......++++...+ + +.+-.++..+.+++ .+|||.++|++++ ||+. ++.| ..+.++|..+|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHHHhC
Confidence 347888999999999999999988 3 67777777666666 9999999999966 7874 4889 677888888875
No 137
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.95 E-value=3.4e-09 Score=64.98 Aligned_cols=60 Identities=38% Similarity=0.867 Sum_probs=51.9
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHH---HcCCCcccEEEEEeCC
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIAT---RYGIRSIPTVMIFKNG 163 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~---~~~i~~~Pt~i~~~~G 163 (186)
++.||..||++|+++.+.+.++ +....++.+..++++...+..+ .+++..+|+++++++|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 4445569999999998877665 8999999999998877
No 138
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.95 E-value=6.5e-09 Score=80.04 Aligned_cols=87 Identities=15% Similarity=0.218 Sum_probs=65.8
Q ss_pred CCCcEEEEEE-CCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC-------------------------ChHHHHHcC
Q 029863 98 SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE-------------------------SPSIATRYG 150 (186)
Q Consensus 98 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~-------------------------~~~l~~~~~ 150 (186)
.||++||+|| +.||+.|....+.+.++.+++.+ ++.++.|+.|. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5789999999 99999999999999999999854 46677766542 346888999
Q ss_pred C----Ccc--cEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHh
Q 029863 151 I----RSI--PTVMIF-KNGEKKDTVIGA----VPKSTLTTSIEK 184 (186)
Q Consensus 151 i----~~~--Pt~i~~-~~G~~~~~~~G~----~~~~~l~~~l~~ 184 (186)
+ .++ |+.+++ ++|+++...... .+.+++.+.|+.
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 8 356 876566 599887765542 356677776654
No 139
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.90 E-value=2.5e-08 Score=78.37 Aligned_cols=83 Identities=22% Similarity=0.401 Sum_probs=69.4
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCC-----------CChHHHHHcCCCcccEEEEEe-CC-e
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD-----------ESPSIATRYGIRSIPTVMIFK-NG-E 164 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d-----------~~~~l~~~~~i~~~Pt~i~~~-~G-~ 164 (186)
.++.-|++||.+.|++|+.+.|.+..++++| ++.++.|++| .+..++++|||..+|+++++. ++ +
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 4677899999999999999999999999998 3788888887 357899999999999987775 44 4
Q ss_pred EEEEEeCCCCHHHHHHHH
Q 029863 165 KKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 165 ~~~~~~G~~~~~~l~~~l 182 (186)
....-.|.++.++|.+-|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 555667899999887643
No 140
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.89 E-value=2.2e-08 Score=78.04 Aligned_cols=88 Identities=13% Similarity=0.150 Sum_probs=65.0
Q ss_pred CCCcEEE-EEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHH
Q 029863 98 SGSPVLV-EFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE---------------------------SPSIATR 148 (186)
Q Consensus 98 ~~k~vvv-~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~---------------------------~~~l~~~ 148 (186)
.|+.++| .||+.||++|....+.+.++++++.+ ++.++.+++|. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4676655 68999999999999999999998864 37777776552 3357788
Q ss_pred cCCC------cccEEEEE-eCCeEEEEE----eCCCCHHHHHHHHHhh
Q 029863 149 YGIR------SIPTVMIF-KNGEKKDTV----IGAVPKSTLTTSIEKF 185 (186)
Q Consensus 149 ~~i~------~~Pt~i~~-~~G~~~~~~----~G~~~~~~l~~~l~~~ 185 (186)
||+. .+|+++++ ++|+++... .+..+.+++.+.|+.+
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 8884 57987677 588777655 2335778888887764
No 141
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.84 E-value=7.4e-08 Score=68.60 Aligned_cols=88 Identities=11% Similarity=0.099 Sum_probs=69.7
Q ss_pred HHhCCCcEEEEEECC----CCcccccch--HHHHHHHHHhcCceEEEEEeCCCC--hHHHHHcCCCcccEEEEE---e-C
Q 029863 95 VLDSGSPVLVEFWAP----WCGPCRMIH--PIIDELSKQYVGKLKCYKVNTDES--PSIATRYGIRSIPTVMIF---K-N 162 (186)
Q Consensus 95 ~~~~~k~vvv~F~a~----wC~~C~~~~--p~l~~l~~~~~~~v~~~~v~~d~~--~~l~~~~~i~~~Pt~i~~---~-~ 162 (186)
.+.++|.++|+++++ ||.+|+... |.+.+ -..+++.++..|++.. .+++..++++++|+++++ . +
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~---~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~ 89 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIE---YINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNR 89 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHH---HHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCc
Confidence 456799999999999 899997655 34444 3345688888888653 579999999999998777 2 3
Q ss_pred CeEEEEEeCCCCHHHHHHHHHhh
Q 029863 163 GEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 163 G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
.+++.++.|..++++|...|+.+
T Consensus 90 ~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 90 MTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred eEEEEEEeCCCCHHHHHHHHHHH
Confidence 45788999999999999888765
No 142
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.82 E-value=4.4e-08 Score=76.35 Aligned_cols=86 Identities=12% Similarity=0.131 Sum_probs=63.2
Q ss_pred Cc-EEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHHcC
Q 029863 100 SP-VLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE---------------------------SPSIATRYG 150 (186)
Q Consensus 100 k~-vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~---------------------------~~~l~~~~~ 150 (186)
++ +|+.||+.||+.|....+.+.++++++.+ ++.++.+++|. +..+++.||
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 54 56689999999999999999999999865 48888887663 235788899
Q ss_pred CC----ccc----E-EEEEeCCeEEEEEeCC----CCHHHHHHHHHhh
Q 029863 151 IR----SIP----T-VMIFKNGEKKDTVIGA----VPKSTLTTSIEKF 185 (186)
Q Consensus 151 i~----~~P----t-~i~~~~G~~~~~~~G~----~~~~~l~~~l~~~ 185 (186)
+. +.| + +++.++|+++....+. .+.+++.+.|+++
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 85 334 3 4444699888777663 3466777777654
No 143
>PRK15000 peroxidase; Provisional
Probab=98.81 E-value=6.8e-08 Score=75.15 Aligned_cols=87 Identities=16% Similarity=0.339 Sum_probs=66.8
Q ss_pred CCCcEEEEEEC-CCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 029863 98 SGSPVLVEFWA-PWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE----------------------------SPSIAT 147 (186)
Q Consensus 98 ~~k~vvv~F~a-~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~----------------------------~~~l~~ 147 (186)
.||++||+||. .||+.|....+.+.++++++.+ ++.++.+++|. +..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 58999999999 5999999999999999999974 47777776652 225777
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEEeCCC----CHHHHHHHHHh
Q 029863 148 RYGIR------SIPTVMIF-KNGEKKDTVIGAV----PKSTLTTSIEK 184 (186)
Q Consensus 148 ~~~i~------~~Pt~i~~-~~G~~~~~~~G~~----~~~~l~~~l~~ 184 (186)
.||+. .+|+.+++ ++|+++....|.. +.+++.+.|+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 78887 68976666 5999988777743 45666666654
No 144
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.79 E-value=2.5e-08 Score=75.79 Aligned_cols=84 Identities=29% Similarity=0.529 Sum_probs=75.2
Q ss_pred ChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE
Q 029863 87 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 166 (186)
Q Consensus 87 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~ 166 (186)
++..|-+.+. ....||+.||-+.-..|+.+..-|+.|++.+-+ .+|++||.+..|-++.+++|+.+|++.+|+||..+
T Consensus 73 ~Ekdf~~~~~-kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~ 150 (211)
T KOG1672|consen 73 SEKDFFEEVK-KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTV 150 (211)
T ss_pred cHHHHHHHhh-cCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEE
Confidence 3566656554 346688999999999999999999999999987 99999999999999999999999999999999999
Q ss_pred EEEeCC
Q 029863 167 DTVIGA 172 (186)
Q Consensus 167 ~~~~G~ 172 (186)
.++.|.
T Consensus 151 D~iVGF 156 (211)
T KOG1672|consen 151 DYVVGF 156 (211)
T ss_pred EEEeeH
Confidence 999985
No 145
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.76 E-value=3.7e-08 Score=65.32 Aligned_cols=71 Identities=21% Similarity=0.379 Sum_probs=50.9
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh-----HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-----SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKST 177 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~-----~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~ 177 (186)
|+.|+++||++|++..+.++++. .++.+.++.++.+++. .+.+.+|+.++|++++ +|+. +.| .++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~---igg---~~~ 70 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKF---IGG---CSD 70 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEE---EcC---HHH
Confidence 46799999999999999999976 3334778888876554 2666789999999843 6753 223 455
Q ss_pred HHHHHH
Q 029863 178 LTTSIE 183 (186)
Q Consensus 178 l~~~l~ 183 (186)
+.++.+
T Consensus 71 ~~~~~~ 76 (84)
T TIGR02180 71 LLALYK 76 (84)
T ss_pred HHHHHH
Confidence 555443
No 146
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.76 E-value=9.4e-08 Score=75.17 Aligned_cols=88 Identities=11% Similarity=0.186 Sum_probs=64.5
Q ss_pred CCCc-EEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHH
Q 029863 98 SGSP-VLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE---------------------------SPSIATR 148 (186)
Q Consensus 98 ~~k~-vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~---------------------------~~~l~~~ 148 (186)
.|++ +|+.||+.||+.|....+.+.++++++.+ ++.++.+++|. +..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4665 46799999999999999999999999964 47787776653 2357788
Q ss_pred cCCC-------cccEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHhh
Q 029863 149 YGIR-------SIPTVMIF-KNGEKKDTVIGA----VPKSTLTTSIEKF 185 (186)
Q Consensus 149 ~~i~-------~~Pt~i~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 185 (186)
||+. .+|+++++ ++|+++..+... ...+++.+.|+.+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 57886666 589887765422 3466676666653
No 147
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.73 E-value=2.5e-09 Score=83.48 Aligned_cols=98 Identities=24% Similarity=0.550 Sum_probs=84.5
Q ss_pred cccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 029863 82 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVMIF 160 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~ 160 (186)
.+..+++++|..+. ..-.++.|+++||+.|....+.|+.++.--.| .|++.++|+..++.+.-+|-+..+|||...
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 66778999998754 34468889999999999999999998765444 389999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHH
Q 029863 161 KNGEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 161 ~~G~~~~~~~G~~~~~~l~~~l~ 183 (186)
++|+- .|+.|+.+.++++.+++
T Consensus 102 kDGeF-rrysgaRdk~dfisf~~ 123 (248)
T KOG0913|consen 102 KDGEF-RRYSGARDKNDFISFEE 123 (248)
T ss_pred ecccc-ccccCcccchhHHHHHH
Confidence 99965 47999999999988875
No 148
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.72 E-value=1.4e-07 Score=83.96 Aligned_cols=93 Identities=13% Similarity=0.269 Sum_probs=74.5
Q ss_pred cccChhHHHHHHHhCCCcE-EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 029863 84 PAVTDATWQSLVLDSGSPV-LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 162 (186)
Q Consensus 84 ~~l~~~~~~~~~~~~~k~v-vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~ 162 (186)
+.++++..+. +..=++++ +-.|..+||++|......+++++.+.+ ++..-.+|..+.++++++|+|.++|++++ |
T Consensus 461 ~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~ 536 (555)
T TIGR03143 461 QPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--D 536 (555)
T ss_pred CCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--C
Confidence 4555555544 33335565 556689999999999999999999876 59999999999999999999999999976 5
Q ss_pred CeEEEEEeCCCCHHHHHHHH
Q 029863 163 GEKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 163 G~~~~~~~G~~~~~~l~~~l 182 (186)
|+++ +.|..+.+++.++|
T Consensus 537 ~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 537 DQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred CEEE--EeeCCCHHHHHHhh
Confidence 6644 66888999888876
No 149
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=3.5e-07 Score=64.92 Aligned_cols=98 Identities=21% Similarity=0.361 Sum_probs=78.2
Q ss_pred ChhHHHHHHHh-CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeE
Q 029863 87 TDATWQSLVLD-SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 87 ~~~~~~~~~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~ 165 (186)
+..+.++++.. ..+.||+-|...|.+.|..+...|.+.++...+-..+|.+|+|+-+++.+-|++...|++++|-|++-
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 34556665544 47899999999999999999999999999998889999999999999999999999999888866655
Q ss_pred EEEEeCCC----------CHHHHHHHHHh
Q 029863 166 KDTVIGAV----------PKSTLTTSIEK 184 (186)
Q Consensus 166 ~~~~~G~~----------~~~~l~~~l~~ 184 (186)
...--|.. +++++++.++-
T Consensus 90 mkiD~gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 90 MKIDLGTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred EEEeeCCCCCceEEEEeccHHHHHHHHHH
Confidence 44333332 35667666653
No 150
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.70 E-value=3.1e-07 Score=74.13 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=64.5
Q ss_pred CCCcEEEEEE-CCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 029863 98 SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE----------------------------SPSIAT 147 (186)
Q Consensus 98 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~----------------------------~~~l~~ 147 (186)
.++++|++|| +.||+.|....+.+.++.+++.+ +++++.+++|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5677877777 99999999999999999999864 37777776653 235888
Q ss_pred HcCCC-----cccEEEEE-eCCeEEEEEeC----CCCHHHHHHHHHhh
Q 029863 148 RYGIR-----SIPTVMIF-KNGEKKDTVIG----AVPKSTLTTSIEKF 185 (186)
Q Consensus 148 ~~~i~-----~~Pt~i~~-~~G~~~~~~~G----~~~~~~l~~~l~~~ 185 (186)
.||+. ..|+.+++ ++|+++..... ....+++.+.|+.+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 89985 47876666 49988876632 23566666666543
No 151
>PRK13189 peroxiredoxin; Provisional
Probab=98.69 E-value=2e-07 Score=73.65 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=63.8
Q ss_pred CCCc-EEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHH
Q 029863 98 SGSP-VLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE---------------------------SPSIATR 148 (186)
Q Consensus 98 ~~k~-vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~---------------------------~~~l~~~ 148 (186)
.||. +|+.||+.||+.|....+.+.++++++.+ +++++.+++|. +..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 4674 45688999999999999999999999864 37777776652 2357788
Q ss_pred cCCC-------cccEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHhh
Q 029863 149 YGIR-------SIPTVMIF-KNGEKKDTVIGA----VPKSTLTTSIEKF 185 (186)
Q Consensus 149 ~~i~-------~~Pt~i~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 185 (186)
||+. .+|+.+++ ++|+++....+. ...+++.+.|+.+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8875 46766566 599887766542 3466777777654
No 152
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.68 E-value=3.1e-07 Score=73.78 Aligned_cols=85 Identities=18% Similarity=0.311 Sum_probs=70.0
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC-----------hHHHHHcCCCcccEEEEEe-C-Ce
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES-----------PSIATRYGIRSIPTVMIFK-N-GE 164 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~-----------~~l~~~~~i~~~Pt~i~~~-~-G~ 164 (186)
.++.-|++||...|++|+++.|.++.++++|+ +.++.|++|.. ..+++++||..+|++++.. + ++
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 36688999999999999999999999999985 78888888754 4589999999999987774 4 44
Q ss_pred EEEEEeCCCCHHHHHHHHHh
Q 029863 165 KKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 165 ~~~~~~G~~~~~~l~~~l~~ 184 (186)
....-.|.++.++|.+-|..
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~ 246 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILN 246 (256)
T ss_pred EEEEeeccCCHHHHHHHHHH
Confidence 55566799999999876643
No 153
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.66 E-value=8e-08 Score=67.12 Aligned_cols=95 Identities=20% Similarity=0.349 Sum_probs=73.0
Q ss_pred ccccccChhHHHHHHHhCCCcEEEEEECCC---CcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEE
Q 029863 81 VEVPAVTDATWQSLVLDSGSPVLVEFWAPW---CGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTV 157 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~~k~vvv~F~a~w---C~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~ 157 (186)
...+.++.++++..+.. +...++ |++.. |+.+....-.+.||.+.+++.+....+..+.+..++.+||+...|++
T Consensus 9 ~g~~~vd~~~ld~~l~~-~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaL 86 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAA-PGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPAL 86 (107)
T ss_dssp -TEEEE-CCCHHHHHHC-CSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred cCCeeechhhHHHHHhC-CCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeE
Confidence 44566777788776554 444444 44444 55566666689999999999999988887788899999999999999
Q ss_pred EEEeCCeEEEEEeCCCCHHH
Q 029863 158 MIFKNGEKKDTVIGAVPKST 177 (186)
Q Consensus 158 i~~~~G~~~~~~~G~~~~~~ 177 (186)
+++++|+.+..+.|..++++
T Consensus 87 vf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 87 VFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp EEEETTEEEEEEESSSTHHH
T ss_pred EEEECCEEEEEecCeecccc
Confidence 99999999999999988775
No 154
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.65 E-value=4.1e-07 Score=71.58 Aligned_cols=88 Identities=11% Similarity=0.164 Sum_probs=63.4
Q ss_pred CCCcEE-EEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC---------------------------ChHHHHH
Q 029863 98 SGSPVL-VEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE---------------------------SPSIATR 148 (186)
Q Consensus 98 ~~k~vv-v~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~---------------------------~~~l~~~ 148 (186)
.||+++ +.||++||+.|....+.|.++++++.+ +++++.+++|. +..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 466655 488999999999999999999999864 47787777662 2357778
Q ss_pred cCCC-------cccEEEEE-eCCeEEEEEeCC----CCHHHHHHHHHhh
Q 029863 149 YGIR-------SIPTVMIF-KNGEKKDTVIGA----VPKSTLTTSIEKF 185 (186)
Q Consensus 149 ~~i~-------~~Pt~i~~-~~G~~~~~~~G~----~~~~~l~~~l~~~ 185 (186)
||+. ..|+.+++ ++|+++....+. .+.+++.+.|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8873 35765555 589888766543 3466666666543
No 155
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.65 E-value=1.5e-07 Score=67.17 Aligned_cols=76 Identities=24% Similarity=0.544 Sum_probs=51.8
Q ss_pred hHHHHHHH---hCCCcEEEEEEC-------CCCcccccchHHHHHHHHHhcCceEEEEEeCCCC-------hHHHH--Hc
Q 029863 89 ATWQSLVL---DSGSPVLVEFWA-------PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES-------PSIAT--RY 149 (186)
Q Consensus 89 ~~~~~~~~---~~~k~vvv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~-------~~l~~--~~ 149 (186)
++|.+.+. .++++++|+|++ +|||.|+..+|.+++.-...+++..++.+.+.+. ..+.+ ++
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~ 85 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDL 85 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEccee
Confidence 34545443 357899999985 6999999999999998888777788888876321 13333 59
Q ss_pred CCCcccEEEEEeCCe
Q 029863 150 GIRSIPTVMIFKNGE 164 (186)
Q Consensus 150 ~i~~~Pt~i~~~~G~ 164 (186)
+++++||++-+..++
T Consensus 86 ~l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 86 KLKGIPTLIRWETGE 100 (119)
T ss_dssp ---SSSEEEECTSS-
T ss_pred eeeecceEEEECCCC
Confidence 999999999998773
No 156
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.64 E-value=2.3e-07 Score=62.21 Aligned_cols=75 Identities=15% Similarity=0.336 Sum_probs=56.6
Q ss_pred EEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh----HHHHHcC--CCcccEEEEEeCCeEEEEEeCCCCH
Q 029863 102 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP----SIATRYG--IRSIPTVMIFKNGEKKDTVIGAVPK 175 (186)
Q Consensus 102 vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~----~l~~~~~--i~~~Pt~i~~~~G~~~~~~~G~~~~ 175 (186)
-++.|+.+||++|++....|+++..++. ++.+..+|++++. ++.+.++ ++.+|++++ ||+.+ | ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i----g--g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI----G--GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE----c--CH
Confidence 4678999999999999999999987763 5889999988753 4555555 478999854 77543 2 35
Q ss_pred HHHHHHHHhh
Q 029863 176 STLTTSIEKF 185 (186)
Q Consensus 176 ~~l~~~l~~~ 185 (186)
++|.+++++.
T Consensus 73 ~~~~~~~~~~ 82 (85)
T PRK11200 73 TDFEAYVKEN 82 (85)
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 157
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.61 E-value=6.9e-07 Score=71.48 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=68.6
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC-----------ChHHHHHcCCCcccEEEEEe--CCe
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-----------SPSIATRYGIRSIPTVMIFK--NGE 164 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~-----------~~~l~~~~~i~~~Pt~i~~~--~G~ 164 (186)
.++.-|++||...|++|..+.|.++.++++|+ +.++.|++|. +...++++||..+|++++.+ .++
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 36688999999999999999999999999984 6777777764 23477899999999987774 345
Q ss_pred EEEEEeCCCCHHHHHHHHHh
Q 029863 165 KKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 165 ~~~~~~G~~~~~~l~~~l~~ 184 (186)
..-.-.|.++.++|.+-|..
T Consensus 220 ~~pv~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 220 VRPLSYGFITQDDLAKRFLN 239 (248)
T ss_pred EEEEeeccCCHHHHHHHHHH
Confidence 56567799999999876643
No 158
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.60 E-value=1.7e-06 Score=62.17 Aligned_cols=97 Identities=22% Similarity=0.324 Sum_probs=75.7
Q ss_pred ChhHHHHHHHh-CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCccc-EEEEEeCCe
Q 029863 87 TDATWQSLVLD-SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIP-TVMIFKNGE 164 (186)
Q Consensus 87 ~~~~~~~~~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~P-t~i~~~~G~ 164 (186)
++-..++++.. .++.+++-|...|-+.|.++...|.+.+++...-..+|.+|+++-+++.+.|.+. .| |+++|-+++
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 34556666654 4789999999999999999999999999999888999999999999999999998 88 566666776
Q ss_pred EEEEEeCCC----------CHHHHHHHHHh
Q 029863 165 KKDTVIGAV----------PKSTLTTSIEK 184 (186)
Q Consensus 165 ~~~~~~G~~----------~~~~l~~~l~~ 184 (186)
.+..-.|.. +++++.+.++.
T Consensus 86 hm~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 86 HMMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp EEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred EEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 655444432 36777776654
No 159
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.58 E-value=6.4e-07 Score=67.78 Aligned_cols=103 Identities=21% Similarity=0.415 Sum_probs=83.7
Q ss_pred ccccccChhHHHHHHHhCCCc-EEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--cccEE
Q 029863 81 VEVPAVTDATWQSLVLDSGSP-VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIR--SIPTV 157 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~~k~-vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~--~~Pt~ 157 (186)
..+..++.+++..+ ...+++ +++.|..........+...++++++++.+++.|+.+|++..+.+.+.||+. .+|++
T Consensus 77 P~v~~~t~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~ 155 (184)
T PF13848_consen 77 PLVPELTPENFEKL-FSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPAL 155 (184)
T ss_dssp TSCEEESTTHHHHH-HSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEE
T ss_pred ccccccchhhHHHH-hcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEE
Confidence 44667788888764 445655 888888777888889999999999999999999999999999999999998 89999
Q ss_pred EEEe--CCeEEEEEeCCCCHHHHHHHHHh
Q 029863 158 MIFK--NGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 158 i~~~--~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
++++ +++......|..+.+.|.+||+.
T Consensus 156 vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 156 VIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9887 44433334788899999999874
No 160
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.56 E-value=2.2e-07 Score=68.16 Aligned_cols=38 Identities=26% Similarity=0.557 Sum_probs=31.2
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEE
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYK 136 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~ 136 (186)
..+++|++|++++||+|+.+++.+.++..++++ +.+..
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~-~~~~~ 41 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD-VRVVF 41 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC-ceEEE
Confidence 367889999999999999999999998877754 44433
No 161
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.55 E-value=3.6e-07 Score=58.48 Aligned_cols=67 Identities=27% Similarity=0.481 Sum_probs=49.2
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHc----CCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRY----GIRSIPTVMIFKNGEKKDTVIGAVPKSTL 178 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~----~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l 178 (186)
++.|+.+||++|+++...+.+. ++.+..++++.+.+..++| ++.++|++++ +|+ .+.| .+.+.|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g-~~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSG-FRPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEec-CCHHHH
Confidence 5679999999999998888773 4778888888776655554 6889999965 442 4555 456666
Q ss_pred HHH
Q 029863 179 TTS 181 (186)
Q Consensus 179 ~~~ 181 (186)
.++
T Consensus 70 ~~~ 72 (73)
T cd02976 70 RAL 72 (73)
T ss_pred Hhh
Confidence 654
No 162
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.54 E-value=9.3e-07 Score=77.97 Aligned_cols=94 Identities=12% Similarity=0.213 Sum_probs=74.9
Q ss_pred cccChhHHHHHHHhCCCc-EEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 029863 84 PAVTDATWQSLVLDSGSP-VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 162 (186)
Q Consensus 84 ~~l~~~~~~~~~~~~~k~-vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~ 162 (186)
+.++++..+. +.+=+++ -+..|..++|++|......+++++...+ ++.+-.+|..+.++++++|++.++|++++ |
T Consensus 101 ~~l~~~~~~~-i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~ 176 (517)
T PRK15317 101 PKLDQEVIEQ-IKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--N 176 (517)
T ss_pred CCCCHHHHHH-HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--C
Confidence 4455555544 3333444 4889999999999999999999999876 59999999999999999999999999965 5
Q ss_pred CeEEEEEeCCCCHHHHHHHHH
Q 029863 163 GEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 163 G~~~~~~~G~~~~~~l~~~l~ 183 (186)
|+. .+.|..+.+++.+.+.
T Consensus 177 ~~~--~~~g~~~~~~~~~~~~ 195 (517)
T PRK15317 177 GEE--FGQGRMTLEEILAKLD 195 (517)
T ss_pred CcE--EEecCCCHHHHHHHHh
Confidence 653 4778888888877765
No 163
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.51 E-value=3.2e-07 Score=69.24 Aligned_cols=40 Identities=33% Similarity=0.594 Sum_probs=34.7
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEE
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKV 137 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 137 (186)
.+++.|++|++..||+|+.+++.+.++.+++++++.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 5788999999999999999999999999998877666433
No 164
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.9e-08 Score=75.90 Aligned_cols=80 Identities=25% Similarity=0.525 Sum_probs=73.8
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHH
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKST 177 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~ 177 (186)
.++..++.||++||..|+.+...+..+++.. .++.+++.+.++.++++..+.+...|+++++..|+.+.+..|..+...
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~ 94 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFL 94 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHH
Confidence 7889999999999999999999999999888 569999999999999999999999999999999999999999877654
Q ss_pred H
Q 029863 178 L 178 (186)
Q Consensus 178 l 178 (186)
.
T Consensus 95 ~ 95 (227)
T KOG0911|consen 95 V 95 (227)
T ss_pred H
Confidence 3
No 165
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=7.8e-07 Score=62.68 Aligned_cols=74 Identities=22% Similarity=0.507 Sum_probs=57.7
Q ss_pred hHHHHHHH--hCCCcEEEEEEC--------CCCcccccchHHHHHHHHHhcCceEEEEEeCCCC-------hHHHHHcCC
Q 029863 89 ATWQSLVL--DSGSPVLVEFWA--------PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES-------PSIATRYGI 151 (186)
Q Consensus 89 ~~~~~~~~--~~~k~vvv~F~a--------~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~-------~~l~~~~~i 151 (186)
++|++.+. ++++.++++|++ +|||.|.+-+|.+.+.-+..+.++.|+.+++.+- ..+.+..++
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 44544432 346679999985 7999999999999998888888899999987543 346667777
Q ss_pred -CcccEEEEEeC
Q 029863 152 -RSIPTVMIFKN 162 (186)
Q Consensus 152 -~~~Pt~i~~~~ 162 (186)
.++||++-+++
T Consensus 93 lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 93 LTAVPTLLRWKR 104 (128)
T ss_pred eeecceeeEEcC
Confidence 89999988875
No 166
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.43 E-value=3.3e-06 Score=62.58 Aligned_cols=82 Identities=29% Similarity=0.480 Sum_probs=64.5
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHh--cCceEEEEEeCCCC---------------------------------
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQY--VGKLKCYKVNTDES--------------------------------- 142 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~~~v~~~~v~~d~~--------------------------------- 142 (186)
..+++|+.|++.-||+|+.+++.+.++.+++ ++++.+...+....
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 3578899999999999999999999999999 77788877744110
Q ss_pred -----------------------------------hHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 029863 143 -----------------------------------PSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 143 -----------------------------------~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
...++++||.++||+++ ||+. +.|..+.++|.++|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 02445679999999977 8874 6888999999999985
No 167
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.43 E-value=3.4e-06 Score=65.43 Aligned_cols=86 Identities=16% Similarity=0.270 Sum_probs=62.4
Q ss_pred CCCcEEEEEEC-CCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC----------------------------ChHHHH
Q 029863 98 SGSPVLVEFWA-PWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE----------------------------SPSIAT 147 (186)
Q Consensus 98 ~~k~vvv~F~a-~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~----------------------------~~~l~~ 147 (186)
.||+++|+||. .||+.|....+.+.++++++.+ ++.++.|+.|. ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 57899999994 8899999999999999999875 47888887652 235778
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEEeCCC----CHHHHHHHHH
Q 029863 148 RYGIR------SIPTVMIF-KNGEKKDTVIGAV----PKSTLTTSIE 183 (186)
Q Consensus 148 ~~~i~------~~Pt~i~~-~~G~~~~~~~G~~----~~~~l~~~l~ 183 (186)
.||+. .+|+.+++ ++|+++....+.. ..+++.+.|+
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~ 161 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLE 161 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 88985 35775555 5888887766632 3344444444
No 168
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.38 E-value=3.7e-06 Score=69.45 Aligned_cols=103 Identities=16% Similarity=0.256 Sum_probs=71.8
Q ss_pred cccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHH------HHHHHHHhcC--ceEEEEEeCCCChHHHHHcCC
Q 029863 80 AVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPI------IDELSKQYVG--KLKCYKVNTDESPSIATRYGI 151 (186)
Q Consensus 80 ~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~------l~~l~~~~~~--~v~~~~v~~d~~~~l~~~~~i 151 (186)
...+.+++..||++. .+.-+..+|+|+.+- +.-+....+ +-+|+++.-+ .+.|+.||..++..+|+++|+
T Consensus 33 kDRVi~LneKNfk~~-lKkyd~l~l~yh~p~-~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRA-LKKYDVLVLYYHEPV-ESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp S--CEEE-TTTHHHH-HHH-SEEEEEEE--S-TSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred ccceEEcchhHHHHH-HHhhcEEEEEEecCC-ccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 356788999999885 555677788888776 333433322 3345555433 399999999999999999999
Q ss_pred CcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 152 RSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 152 ~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
...+++.+|++|+++. +.|..+++.|..||..+
T Consensus 111 ~E~~SiyVfkd~~~IE-ydG~~saDtLVeFl~dl 143 (383)
T PF01216_consen 111 EEEGSIYVFKDGEVIE-YDGERSADTLVEFLLDL 143 (383)
T ss_dssp -STTEEEEEETTEEEE-E-S--SHHHHHHHHHHH
T ss_pred cccCcEEEEECCcEEE-ecCccCHHHHHHHHHHh
Confidence 9999999999999986 77999999999998765
No 169
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.36 E-value=2.8e-06 Score=57.18 Aligned_cols=73 Identities=12% Similarity=0.349 Sum_probs=53.1
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh----HHHHHcCC--CcccEEEEEeCCeEEEEEeCCCCHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP----SIATRYGI--RSIPTVMIFKNGEKKDTVIGAVPKS 176 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~----~l~~~~~i--~~~Pt~i~~~~G~~~~~~~G~~~~~ 176 (186)
|+.|..+|||+|.+....|+++..++.+ +.+..+|++.+. ++.+.+|- +.+|.+++ +|+. .| ..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~----ig--G~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH----VG--GCT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE----ec--CHH
Confidence 6678999999999999999998655543 777788887533 56667774 79999954 5643 22 357
Q ss_pred HHHHHHHh
Q 029863 177 TLTTSIEK 184 (186)
Q Consensus 177 ~l~~~l~~ 184 (186)
+|.+++++
T Consensus 73 dl~~~~~~ 80 (86)
T TIGR02183 73 DFEQLVKE 80 (86)
T ss_pred HHHHHHHh
Confidence 77777654
No 170
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.36 E-value=5.3e-06 Score=57.76 Aligned_cols=92 Identities=20% Similarity=0.319 Sum_probs=65.5
Q ss_pred ChhHHHHHHHhC-CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh----HHHHHcCCC-cccEEEEE
Q 029863 87 TDATWQSLVLDS-GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP----SIATRYGIR-SIPTVMIF 160 (186)
Q Consensus 87 ~~~~~~~~~~~~-~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~----~l~~~~~i~-~~Pt~i~~ 160 (186)
+.++|+++...+ +++++++=-.+.||-..+....+++.....++.+.+|.+|+-+++ .++++|||+ .-|-++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 567787766554 788888888999999999999999999998877999999987664 689999997 46999999
Q ss_pred eCCeEEEEEe-CCCCHHHH
Q 029863 161 KNGEKKDTVI-GAVPKSTL 178 (186)
Q Consensus 161 ~~G~~~~~~~-G~~~~~~l 178 (186)
+||+.+..-. +.++.+.|
T Consensus 86 ~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 86 KNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp ETTEEEEEEEGGG-SHHHH
T ss_pred ECCEEEEECccccCCHHhc
Confidence 9999886443 34555554
No 171
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.36 E-value=3e-06 Score=59.81 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=76.9
Q ss_pred ccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHH---hcCceEEEEEeCCCChHHHHHcCCCc--ccEE
Q 029863 83 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQ---YVGKLKCYKVNTDESPSIATRYGIRS--IPTV 157 (186)
Q Consensus 83 v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~---~~~~v~~~~v~~d~~~~l~~~~~i~~--~Pt~ 157 (186)
|++++.++... +..++.+..+.|+.+ ..-..+...+.+++++ +.+++.|+.+|.++.....+.||+.. +|.+
T Consensus 1 ~~e~t~e~~~~-~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEE-LTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHH-HhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 35677777765 455666666666622 2336678899999999 99999999999999888999999987 8998
Q ss_pred EEEeCCe-EEEE-EeCCCCHHHHHHHHHhhC
Q 029863 158 MIFKNGE-KKDT-VIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 158 i~~~~G~-~~~~-~~G~~~~~~l~~~l~~~l 186 (186)
.+..... .... ..+..+.+.|.+|+++++
T Consensus 78 ~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 78 AIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred EEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence 8875332 2223 557788999999999864
No 172
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.35 E-value=5.2e-06 Score=73.27 Aligned_cols=96 Identities=15% Similarity=0.272 Sum_probs=75.4
Q ss_pred cccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC
Q 029863 84 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 163 (186)
Q Consensus 84 ~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G 163 (186)
+.++++..+.+..-.+..-+..|..+.|++|......+++++.+.+ ++..-.+|..+.++++++|++.++|++++ ||
T Consensus 102 ~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~ 178 (515)
T TIGR03140 102 PKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NG 178 (515)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CC
Confidence 4556665554322234445888999999999999999999999887 58899999999999999999999999966 56
Q ss_pred eEEEEEeCCCCHHHHHHHHHh
Q 029863 164 EKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 164 ~~~~~~~G~~~~~~l~~~l~~ 184 (186)
+. .+.|..+.+++.+.+.+
T Consensus 179 ~~--~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 179 EE--FHNGRMDLAELLEKLEE 197 (515)
T ss_pred cE--EEecCCCHHHHHHHHhh
Confidence 53 37788888888666543
No 173
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.35 E-value=1.5e-06 Score=54.29 Aligned_cols=55 Identities=27% Similarity=0.527 Sum_probs=43.6
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHH----HcCCCcccEEEEEeCCeE
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIAT----RYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~----~~~i~~~Pt~i~~~~G~~ 165 (186)
++.|+.+||++|++....|++. ++.+-.+|++++++..+ ..|..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 5679999999999999999764 48888888888754333 349999999965 7754
No 174
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=4.3e-06 Score=62.35 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=79.9
Q ss_pred eccccccccccccChhHHHHHHHhCCCcEEEEEE-CCCCcccccchHHHHHHHHHhcC-ceEEEEEeCC-----------
Q 029863 74 CEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD----------- 140 (186)
Q Consensus 74 ~~~~~~~~~v~~l~~~~~~~~~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d----------- 140 (186)
.+...++++++..+++.+. +..-.|++||++|| ..|++.|-...-.+++...++.. ++.++.|+.|
T Consensus 6 ~G~~aPdF~Lp~~~g~~v~-Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k 84 (157)
T COG1225 6 VGDKAPDFELPDQDGETVS-LSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEK 84 (157)
T ss_pred CCCcCCCeEeecCCCCEEe-hHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHH
Confidence 3456667777777776653 34456889999999 88999999999999999888866 4788888664
Q ss_pred ----------CChHHHHHcCCCc------------cc-EEEEEeCCeEEEEEeCCCC---HHHHHHHHHhh
Q 029863 141 ----------ESPSIATRYGIRS------------IP-TVMIFKNGEKKDTVIGAVP---KSTLTTSIEKF 185 (186)
Q Consensus 141 ----------~~~~l~~~~~i~~------------~P-t~i~~~~G~~~~~~~G~~~---~~~l~~~l~~~ 185 (186)
.+..+++.||+.+ .+ |++|.++|+++..+..... .+++.+.|+++
T Consensus 85 ~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 85 HGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred hCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 4557889999843 23 5666679998887755433 34555555543
No 175
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.30 E-value=4.2e-06 Score=55.28 Aligned_cols=70 Identities=20% Similarity=0.341 Sum_probs=49.8
Q ss_pred CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC---hHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCH
Q 029863 99 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES---PSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPK 175 (186)
Q Consensus 99 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~---~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~ 175 (186)
.+.-|+.|+.+||++|++....|++. ++.+..+|++++ ..+.+.+|...+|.+++ +|+. +.| .
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~---igG---~ 71 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL---IGG---S 71 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE---EcC---H
Confidence 44557779999999999999999764 377777887765 34555678899999854 6753 223 3
Q ss_pred HHHHHHH
Q 029863 176 STLTTSI 182 (186)
Q Consensus 176 ~~l~~~l 182 (186)
++|.++|
T Consensus 72 ~~l~~~l 78 (79)
T TIGR02190 72 DELEAYL 78 (79)
T ss_pred HHHHHHh
Confidence 5565554
No 176
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.24 E-value=2.9e-06 Score=66.25 Aligned_cols=39 Identities=26% Similarity=0.536 Sum_probs=32.5
Q ss_pred CCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEE
Q 029863 99 GSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKV 137 (186)
Q Consensus 99 ~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v 137 (186)
+++.|++|++-.||+|..+++.+ +.+.+.+++++.+..+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~ 78 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKY 78 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEe
Confidence 56779999999999999999876 7888888877666544
No 177
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.23 E-value=1.6e-05 Score=57.64 Aligned_cols=104 Identities=11% Similarity=0.223 Sum_probs=74.3
Q ss_pred cccccChhHH-HHHHHhCCCcEEEEEECC--CCcc-c-ccchHHHHHHHHHhcCc-eEEEEEeCCCChHHHHHcCCC--c
Q 029863 82 EVPAVTDATW-QSLVLDSGSPVLVEFWAP--WCGP-C-RMIHPIIDELSKQYVGK-LKCYKVNTDESPSIATRYGIR--S 153 (186)
Q Consensus 82 ~v~~l~~~~~-~~~~~~~~k~vvv~F~a~--wC~~-C-~~~~p~l~~l~~~~~~~-v~~~~v~~d~~~~l~~~~~i~--~ 153 (186)
++.++++++. ++.- .+++.-+|-|.-. .|.. + ..+...+.+++++|.++ +.|+++|.++...+.+.||+. +
T Consensus 3 ~~~~l~~~~~~~~~C-~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 3 EIIELTSEDVFEETC-EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred ceEEecCHHHHHhhc-cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 4566766555 3322 2345566666432 1222 2 34567889999999999 999999999999999999995 5
Q ss_pred ccEEEEEeCCeEEEE-EeCCCCHHHHHHHHHhhC
Q 029863 154 IPTVMIFKNGEKKDT-VIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 154 ~Pt~i~~~~G~~~~~-~~G~~~~~~l~~~l~~~l 186 (186)
+|++++++..+.... +.|..+.+.+.+|+++++
T Consensus 82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred CCEEEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 999988864322333 668899999999998864
No 178
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.20 E-value=8.1e-06 Score=53.76 Aligned_cols=69 Identities=23% Similarity=0.406 Sum_probs=48.4
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh-----HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-----SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKST 177 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~-----~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~ 177 (186)
++.|+++|||+|+.....++++.. ...++.++.+++. .+.+.+|..++|++ |.+|+.+ | ..++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i----g--g~~~ 69 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI----G--GCDD 69 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE----c--CHHH
Confidence 467899999999999999999743 3667777776552 35556789999997 4467532 2 3455
Q ss_pred HHHHHH
Q 029863 178 LTTSIE 183 (186)
Q Consensus 178 l~~~l~ 183 (186)
+.++.+
T Consensus 70 ~~~~~~ 75 (82)
T cd03419 70 LMALHK 75 (82)
T ss_pred HHHHHH
Confidence 555443
No 179
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.16 E-value=1.2e-05 Score=56.86 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=70.2
Q ss_pred ccChhHHHHHHHhCCCcEEEEEE-C---CCCcccccchHHHHHHHHHhc-CceEEEEEeCCCChHHHHHcCCCc----cc
Q 029863 85 AVTDATWQSLVLDSGSPVLVEFW-A---PWCGPCRMIHPIIDELSKQYV-GKLKCYKVNTDESPSIATRYGIRS----IP 155 (186)
Q Consensus 85 ~l~~~~~~~~~~~~~k~vvv~F~-a---~wC~~C~~~~p~l~~l~~~~~-~~v~~~~v~~d~~~~l~~~~~i~~----~P 155 (186)
.++.++.... . ..+.++.|+ . ..-..-..+...+.+++++++ +++.|+.+|.++.....+.||+.. .|
T Consensus 3 ~~~~en~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 3 HRTKDNRAQF-T--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKP 79 (111)
T ss_pred eeccchHHHh-c--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence 3455666553 2 344444443 2 222333567889999999999 799999999998888999999984 99
Q ss_pred EEEEEeCCeEEEEEeCCC-CHHHHHHHHHhhC
Q 029863 156 TVMIFKNGEKKDTVIGAV-PKSTLTTSIEKFL 186 (186)
Q Consensus 156 t~i~~~~G~~~~~~~G~~-~~~~l~~~l~~~l 186 (186)
++.++..........+.. +.+.|.+|+++++
T Consensus 80 ~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 80 VVAIRTAKGKKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred EEEEEeCCCCccCCCcccCCHHHHHHHHHHhC
Confidence 998876322333356677 8899999999864
No 180
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.11 E-value=9.5e-06 Score=52.53 Aligned_cols=66 Identities=21% Similarity=0.438 Sum_probs=49.3
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHc---CCCcccEEEEEeCCeEEEEEeCCCCHHHHHH
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRY---GIRSIPTVMIFKNGEKKDTVIGAVPKSTLTT 180 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~---~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~ 180 (186)
..|+.+||++|++....|++. ++.+-.+|++++++..+.+ |...+|.+++ +|+ ..+.| .+++.|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G-~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSG-FRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEec-cCHHHHHh
Confidence 468899999999999999873 4888889998887666655 8889999854 343 23555 56666655
No 181
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.09 E-value=1.5e-05 Score=50.42 Aligned_cols=56 Identities=20% Similarity=0.389 Sum_probs=42.3
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHH----HHHcCCCcccEEEEEeCCeEE
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSI----ATRYGIRSIPTVMIFKNGEKK 166 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l----~~~~~i~~~Pt~i~~~~G~~~ 166 (186)
++.|+.+||++|+.....|.+.. +.+..+|++++.+. .+..+...+|+++ .+|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 56789999999999999999862 77888888877643 3345778889874 377533
No 182
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.06 E-value=3.3e-05 Score=68.81 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=75.3
Q ss_pred HHHHHHhCCCc-EEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEe-CCeEE-E
Q 029863 91 WQSLVLDSGSP-VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK-NGEKK-D 167 (186)
Q Consensus 91 ~~~~~~~~~k~-vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~-~G~~~-~ 167 (186)
++.....-.++ .++.|+++.|.+|.++...+++++. +.+++++...|.+++.+++++|++...|++.+++ +|+.. -
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i 435 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGL 435 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccce
Confidence 33333333455 5778999999999999999999884 4578999889999999999999999999999885 66433 4
Q ss_pred EEeCCCCHHHHHHHHHhh
Q 029863 168 TVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 168 ~~~G~~~~~~l~~~l~~~ 185 (186)
+|.|...-.++..+|..+
T Consensus 436 ~f~g~P~G~Ef~s~i~~i 453 (555)
T TIGR03143 436 KFHGVPSGHELNSFILAL 453 (555)
T ss_pred EEEecCccHhHHHHHHHH
Confidence 899988888888888765
No 183
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.02 E-value=1.4e-05 Score=55.27 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=38.6
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChH-------HHHHcCCCcccEEEEEeCCe
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPS-------IATRYGIRSIPTVMIFKNGE 164 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~-------l~~~~~i~~~Pt~i~~~~G~ 164 (186)
|+.|..+|||+|++....|.++ ++.+..+|+|++++ +.+..|.+.+|.++ -+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCE
Confidence 5558999999999999988875 35566677765533 33344678999983 3674
No 184
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=98.02 E-value=1.7e-05 Score=53.10 Aligned_cols=59 Identities=22% Similarity=0.432 Sum_probs=45.7
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeC--CC------------------------------ChHHHHHcC
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNT--DE------------------------------SPSIATRYG 150 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~--d~------------------------------~~~l~~~~~ 150 (186)
+..|++++|++|..+.+.++++.+...+++.+....+ .. +...++++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999877777776665543 22 124677899
Q ss_pred CCcccEEEEEe
Q 029863 151 IRSIPTVMIFK 161 (186)
Q Consensus 151 i~~~Pt~i~~~ 161 (186)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999997643
No 185
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.95 E-value=3.6e-05 Score=49.78 Aligned_cols=54 Identities=19% Similarity=0.428 Sum_probs=41.0
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHH----HcCCC-cccEEEEEeCCe
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIAT----RYGIR-SIPTVMIFKNGE 164 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~----~~~i~-~~Pt~i~~~~G~ 164 (186)
++.|+.+||++|.+....|++. ++.+..+|++++++..+ .+|.. ++|+++ -+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCE
Confidence 5678999999999999999874 47788888887755444 35766 899874 3664
No 186
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.94 E-value=6.1e-05 Score=50.11 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=51.7
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHH---HcCCCcccEEEEEeCCeEEEEEeCCCCHHHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIAT---RYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLT 179 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~---~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~ 179 (186)
+..|..+||++|++....|++. ++.+-.+|++++++.++ ..|...+|++++ ++. .+.| ...+.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~G-f~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSG-FRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEec-CCHHHHH
Confidence 5678999999999999988763 48899999998776443 457789999955 342 3555 4677787
Q ss_pred HHHHh
Q 029863 180 TSIEK 184 (186)
Q Consensus 180 ~~l~~ 184 (186)
+++..
T Consensus 71 ~~~~~ 75 (81)
T PRK10329 71 RLHPA 75 (81)
T ss_pred HHHHh
Confidence 77653
No 187
>PHA03050 glutaredoxin; Provisional
Probab=97.93 E-value=2.8e-05 Score=54.64 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=39.9
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC---Ch----HHHHHcCCCcccEEEEEeCCe
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE---SP----SIATRYGIRSIPTVMIFKNGE 164 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~---~~----~l~~~~~i~~~Pt~i~~~~G~ 164 (186)
|+.|..+|||+|++....|+++.-+++ .+-.+|+++ .. .+.+..|.+.+|++++ +|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~ 78 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKT 78 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCE
Confidence 566899999999999999988632221 355566654 22 3555678889999944 565
No 188
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.92 E-value=0.00015 Score=49.20 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=66.0
Q ss_pred hHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC-eEEE
Q 029863 89 ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG-EKKD 167 (186)
Q Consensus 89 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G-~~~~ 167 (186)
+.+++ .....++++|-|+..+|+ .....+.+++..+.+.+.|+.++ +.++++.+++. .|++++|++. +...
T Consensus 8 ~~l~~-~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~~~ 79 (97)
T cd02981 8 EELEK-FLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEEPV 79 (97)
T ss_pred HHHHH-HhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccCCc
Confidence 33444 355688888899999887 56788899999988778887766 45788888875 4888888654 3334
Q ss_pred EEeCCCCHHHHHHHHHh
Q 029863 168 TVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 168 ~~~G~~~~~~l~~~l~~ 184 (186)
.+.|....+.|.+||..
T Consensus 80 ~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 80 EYDGEFTEESLVEFIKD 96 (97)
T ss_pred cCCCCCCHHHHHHHHHh
Confidence 57887788999999864
No 189
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.90 E-value=6.2e-05 Score=49.98 Aligned_cols=78 Identities=22% Similarity=0.425 Sum_probs=60.0
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC--eEEEEEeCCCCHHHHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG--EKKDTVIGAVPKSTLTT 180 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G--~~~~~~~G~~~~~~l~~ 180 (186)
|+.|..+.|+-|......+.++.... .+.+-.+|+++++++..+|+. .+|.+.+-..+ .......+..+.+.|.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 67899999999999999999875443 389999999999999999996 79997543210 11235677889999999
Q ss_pred HHH
Q 029863 181 SIE 183 (186)
Q Consensus 181 ~l~ 183 (186)
+|+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 190
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.88 E-value=9.9e-05 Score=47.57 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=46.8
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChH---HHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPS---IATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLT 179 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~---l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~ 179 (186)
++.|..+||++|.+....|++. ++.+..+|++++.. +.+..|...+|.++ -+|+.+ | ..++|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i----g--g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI----G--GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE----e--CHHHHH
Confidence 5678999999999999888864 47777778776543 33345889999984 356532 2 356676
Q ss_pred HHH
Q 029863 180 TSI 182 (186)
Q Consensus 180 ~~l 182 (186)
+++
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 665
No 191
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.85 E-value=6.8e-05 Score=48.53 Aligned_cols=54 Identities=20% Similarity=0.408 Sum_probs=42.3
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEeCCe
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPS----IATRYGIRSIPTVMIFKNGE 164 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~----l~~~~~i~~~Pt~i~~~~G~ 164 (186)
++.|..+||++|++....|++. ++.+-.+|++++++ +.+..+-..+|++++ ||+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 5678999999999999999974 47888889888765 455567788999844 564
No 192
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.82 E-value=3e-05 Score=50.87 Aligned_cols=54 Identities=19% Similarity=0.506 Sum_probs=40.8
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHH----HcCCCcccEEEEEeCCe
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIAT----RYGIRSIPTVMIFKNGE 164 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~----~~~i~~~Pt~i~~~~G~ 164 (186)
++.|+.+||++|.+....|++. ++.+-.+|++.++...+ ..|...+|++++ +|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 3568999999999999999874 36777778877765444 447889999844 564
No 193
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=6e-05 Score=67.38 Aligned_cols=92 Identities=16% Similarity=0.256 Sum_probs=76.5
Q ss_pred ccccccccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEEeCCCChHHHHHcC-
Q 029863 75 EAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDESPSIATRYG- 150 (186)
Q Consensus 75 ~~~~~~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v~~d~~~~l~~~~~- 150 (186)
....++.+......+.|.+ ....+||++|-...+||-.|+.|+.+- .++++-++.++..++||-++-|++.+.|.
T Consensus 20 ~ha~nPV~W~pW~~eAf~~-A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~ 98 (667)
T COG1331 20 QHAHNPVDWYPWGEEAFAK-AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMN 98 (667)
T ss_pred hccCCCccccccCHHHHHH-HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHH
Confidence 3445678888889999977 466899999999999999999999765 77888888889999999999999888875
Q ss_pred -------CCccc-EEEEEeCCeEEE
Q 029863 151 -------IRSIP-TVMIFKNGEKKD 167 (186)
Q Consensus 151 -------i~~~P-t~i~~~~G~~~~ 167 (186)
--|.| |+++-.||++..
T Consensus 99 ~~q~~tG~GGWPLtVfLTPd~kPFf 123 (667)
T COG1331 99 ASQAITGQGGWPLTVFLTPDGKPFF 123 (667)
T ss_pred HHHHhccCCCCceeEEECCCCceee
Confidence 55889 566668998764
No 194
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.82 E-value=1.5e-05 Score=60.81 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=26.6
Q ss_pred EEECCCCcccccchHHHHHHHHHhcCceEEEEE
Q 029863 105 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKV 137 (186)
Q Consensus 105 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 137 (186)
+|.+|+|+.|...+|.+.++..+|++++.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 699999999999999999999999988766544
No 195
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.76 E-value=0.00022 Score=49.04 Aligned_cols=58 Identities=26% Similarity=0.368 Sum_probs=41.5
Q ss_pred CCcEEEEEE----CCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHH----HHcCCCcccEEEEEeCCe
Q 029863 99 GSPVLVEFW----APWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIA----TRYGIRSIPTVMIFKNGE 164 (186)
Q Consensus 99 ~k~vvv~F~----a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~----~~~~i~~~Pt~i~~~~G~ 164 (186)
..+|+|+-. .+|||+|++....|.+. ++.+..+|+++++++. +..|-..+|.+++ +|+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~ 76 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGE 76 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence 455665443 38999999999999885 3677888887776544 3456778898844 564
No 196
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00024 Score=47.13 Aligned_cols=67 Identities=21% Similarity=0.450 Sum_probs=45.9
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh-----HHHHHc-CCCcccEEEEEeCCeEEEEEeCCCCHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-----SIATRY-GIRSIPTVMIFKNGEKKDTVIGAVPKS 176 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~-----~l~~~~-~i~~~Pt~i~~~~G~~~~~~~G~~~~~ 176 (186)
++.|..+|||+|.+....|.+. .+.+..++++++. +..++. |.+.+|.+++ +|+ .+.|-.+.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~---~igg~~d~~ 71 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGK---HVGGCDDLD 71 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCE---EEeCcccHH
Confidence 5678999999999999999864 4777777766554 344444 7899999855 443 233444555
Q ss_pred HHHH
Q 029863 177 TLTT 180 (186)
Q Consensus 177 ~l~~ 180 (186)
++..
T Consensus 72 ~~~~ 75 (80)
T COG0695 72 ALEA 75 (80)
T ss_pred HHHh
Confidence 5543
No 197
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00031 Score=57.46 Aligned_cols=106 Identities=19% Similarity=0.322 Sum_probs=78.2
Q ss_pred ccccccccChhHHHHHHHhCCC--cEEEEEECC----CCcccccchHHHHHHHHHhcC--------ceEEEEEeCCCChH
Q 029863 79 TAVEVPAVTDATWQSLVLDSGS--PVLVEFWAP----WCGPCRMIHPIIDELSKQYVG--------KLKCYKVNTDESPS 144 (186)
Q Consensus 79 ~~~~v~~l~~~~~~~~~~~~~k--~vvv~F~a~----wC~~C~~~~p~l~~l~~~~~~--------~v~~~~v~~d~~~~ 144 (186)
....+..++++.|.+.+....+ .+++.|.|. .|.-|+..+.+++-++..+.. ++-|..||.|+.++
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 3456777899999888775544 557778764 499999999999998887632 47899999999999
Q ss_pred HHHHcCCCcccEEEEEe--CCeEEE--EEeC---CCCHHHHHHHHHh
Q 029863 145 IATRYGIRSIPTVMIFK--NGEKKD--TVIG---AVPKSTLTTSIEK 184 (186)
Q Consensus 145 l~~~~~i~~~Pt~i~~~--~G~~~~--~~~G---~~~~~~l~~~l~~ 184 (186)
+.+++++..+|++++|. .|++.+ ...+ ....|++.+|++.
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~ 164 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVAD 164 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHH
Confidence 99999999999999993 333321 1111 1126777777764
No 198
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.60 E-value=0.00016 Score=56.26 Aligned_cols=101 Identities=16% Similarity=0.364 Sum_probs=76.6
Q ss_pred cccc-ChhHHHHHHHhC--CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE
Q 029863 83 VPAV-TDATWQSLVLDS--GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMI 159 (186)
Q Consensus 83 v~~l-~~~~~~~~~~~~--~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~ 159 (186)
|.++ ++++|.+.+..+ -..++|..|-+.-+.|..+-..+.-|+++|+- ++|+++-... .....+|...++||++|
T Consensus 140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~-~gas~~F~~n~lP~Lli 217 (273)
T KOG3171|consen 140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSN-TGASDRFSLNVLPTLLI 217 (273)
T ss_pred EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeecc-ccchhhhcccCCceEEE
Confidence 3344 567776666554 23678899999999999999999999999986 9999986543 35678899999999999
Q ss_pred EeCCeEEEEEeC-------CCCHHHHHHHHHhh
Q 029863 160 FKNGEKKDTVIG-------AVPKSTLTTSIEKF 185 (186)
Q Consensus 160 ~~~G~~~~~~~G-------~~~~~~l~~~l~~~ 185 (186)
|++|+.+..+.. .....+|+.||+++
T Consensus 218 YkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 218 YKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred eeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999987764432 23345677777653
No 199
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.58 E-value=0.00047 Score=54.60 Aligned_cols=109 Identities=16% Similarity=0.261 Sum_probs=76.4
Q ss_pred eccccccccccccChhHHHHHH--HhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC----------
Q 029863 74 CEAQETAVEVPAVTDATWQSLV--LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE---------- 141 (186)
Q Consensus 74 ~~~~~~~~~v~~l~~~~~~~~~--~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~---------- 141 (186)
.+...+...+..+++++...+. .+.++|.||+|.+-.||+=+.-...+++++++|.+.+.|+.|-++|
T Consensus 75 ~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~ 154 (237)
T PF00837_consen 75 LGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFG 154 (237)
T ss_pred CCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCC
Confidence 4556667777888777732222 3468999999999999999999999999999999877776663321
Q ss_pred --------Ch----------------------------HHHHHcCCCcccE-EEEEeCCeEEEEEeCC----CCHHHHHH
Q 029863 142 --------SP----------------------------SIATRYGIRSIPT-VMIFKNGEKKDTVIGA----VPKSTLTT 180 (186)
Q Consensus 142 --------~~----------------------------~l~~~~~i~~~Pt-~i~~~~G~~~~~~~G~----~~~~~l~~ 180 (186)
++ ...+.|| ..|. +.+++||+++. ..|. ...+++++
T Consensus 155 ~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gkv~Y-~Gg~GP~~y~~~e~r~ 231 (237)
T PF00837_consen 155 NNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGKVVY-KGGPGPFGYSPEELRE 231 (237)
T ss_pred CCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCEEEE-eCCCCCCcCCHHHHHH
Confidence 11 1222222 4784 77889998763 3332 34789999
Q ss_pred HHHhh
Q 029863 181 SIEKF 185 (186)
Q Consensus 181 ~l~~~ 185 (186)
+|+++
T Consensus 232 ~L~~~ 236 (237)
T PF00837_consen 232 WLEKY 236 (237)
T ss_pred HHHhc
Confidence 99875
No 200
>PRK10638 glutaredoxin 3; Provisional
Probab=97.52 E-value=0.00035 Score=46.35 Aligned_cols=54 Identities=13% Similarity=0.362 Sum_probs=40.7
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChH----HHHHcCCCcccEEEEEeCCe
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPS----IATRYGIRSIPTVMIFKNGE 164 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~----l~~~~~i~~~Pt~i~~~~G~ 164 (186)
++.|..+||++|++....|++. ++.+-.+|++++++ +.+..|...+|++++ +|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 5678899999999999999874 36777788877654 344557788998744 675
No 201
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.50 E-value=0.00047 Score=46.61 Aligned_cols=58 Identities=22% Similarity=0.414 Sum_probs=41.4
Q ss_pred CCcEEEEEEC----CCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHH----HHcCCCcccEEEEEeCCe
Q 029863 99 GSPVLVEFWA----PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIA----TRYGIRSIPTVMIFKNGE 164 (186)
Q Consensus 99 ~k~vvv~F~a----~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~----~~~~i~~~Pt~i~~~~G~ 164 (186)
+.+|+|+-.. +||++|+.....|++. ++.+..+|+++++++. +..|-+.+|.+++ +|+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence 4566664332 7999999999999886 3777788887776543 3457789999843 675
No 202
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.49 E-value=0.0012 Score=49.21 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=51.1
Q ss_pred CCCcE-EEEEECCCCcccccc-hHHHHHHHHHhcC-ce-EEEEEeCC-----------------------CChHHHHHcC
Q 029863 98 SGSPV-LVEFWAPWCGPCRMI-HPIIDELSKQYVG-KL-KCYKVNTD-----------------------ESPSIATRYG 150 (186)
Q Consensus 98 ~~k~v-vv~F~a~wC~~C~~~-~p~l~~l~~~~~~-~v-~~~~v~~d-----------------------~~~~l~~~~~ 150 (186)
.++++ |+.|...||+.|... .+.+.+..+++.. ++ .++.+..| .+.++++.||
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~yg 107 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALG 107 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcC
Confidence 34444 555559999999999 9999998888753 24 46666443 3457888898
Q ss_pred CC------c-----ccEEEEEeCCeEEEEEeCCC
Q 029863 151 IR------S-----IPTVMIFKNGEKKDTVIGAV 173 (186)
Q Consensus 151 i~------~-----~Pt~i~~~~G~~~~~~~G~~ 173 (186)
+. + ....+++++|+++..+....
T Consensus 108 v~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~~ 141 (155)
T cd03013 108 LTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEED 141 (155)
T ss_pred CCccccccCCcceeeeEEEEECCCEEEEEEEecC
Confidence 73 1 13455667888877665543
No 203
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0014 Score=48.56 Aligned_cols=105 Identities=17% Similarity=0.247 Sum_probs=71.9
Q ss_pred cccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCc-eEEEEEeCCCC--------h---HHHH
Q 029863 80 AVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDES--------P---SIAT 147 (186)
Q Consensus 80 ~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~d~~--------~---~l~~ 147 (186)
+..+..++++.+. +..-.||++||.=.|+-|+.-- ....|+.|.++|.++ +.++...|+.- . ++|+
T Consensus 7 d~~~~~~~G~~~~-l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~ 84 (162)
T COG0386 7 DFSVKDIDGEPVS-LSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQ 84 (162)
T ss_pred cceeeccCCCCcc-HHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHH
Confidence 3445555665553 2345799999999999999876 445678888888775 77777766421 1 2222
Q ss_pred -HcCCC-----------------------c-------------ccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 148 -RYGIR-----------------------S-------------IPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 148 -~~~i~-----------------------~-------------~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
.|||+ . +=-+++.++|+++.|+.-...+++++..|+++|
T Consensus 85 ~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 85 LNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred hccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 34443 1 123667789999999999889999998888765
No 204
>PRK10824 glutaredoxin-4; Provisional
Probab=97.41 E-value=0.00065 Score=48.21 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=38.8
Q ss_pred CCcEEEEEEC----CCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHH----cCCCcccEEEEEeCCe
Q 029863 99 GSPVLVEFWA----PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATR----YGIRSIPTVMIFKNGE 164 (186)
Q Consensus 99 ~k~vvv~F~a----~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~----~~i~~~Pt~i~~~~G~ 164 (186)
..+|+|+-.. +|||+|++....|.++ ++.+..+|+++++++... -|-+.+|.+++ +|+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~ 79 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC------GERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGE 79 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc------CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 4555554332 6999999999999886 255666777766554443 35667888755 675
No 205
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.29 E-value=0.0093 Score=42.56 Aligned_cols=98 Identities=21% Similarity=0.332 Sum_probs=66.8
Q ss_pred cccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHH-HHh--cCceEEEEEeCC-----CChHHHHHcCC--Cc
Q 029863 84 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELS-KQY--VGKLKCYKVNTD-----ESPSIATRYGI--RS 153 (186)
Q Consensus 84 ~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~-~~~--~~~v~~~~v~~d-----~~~~l~~~~~i--~~ 153 (186)
.+++.-+|++.+ ..-+.+||.|=... +==+-+..+.+++ +.. .+++-+..|-+. +|.+|+++|+| ..
T Consensus 7 v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~ 83 (126)
T PF07912_consen 7 VPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED 83 (126)
T ss_dssp EEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred eeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence 467888998855 45689999986543 3345567788888 433 234777777553 57899999999 56
Q ss_pred ccEEEEEe-CCeEEEEE--eCCCCHHHHHHHHHh
Q 029863 154 IPTVMIFK-NGEKKDTV--IGAVPKSTLTTSIEK 184 (186)
Q Consensus 154 ~Pt~i~~~-~G~~~~~~--~G~~~~~~l~~~l~~ 184 (186)
+|.+++|. +.+.--++ .|....+.|.+|+.+
T Consensus 84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKS 117 (126)
T ss_dssp -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHH
T ss_pred CCEEEEecCCCCCCccCCccCCccHHHHHHHHHh
Confidence 89998887 33444467 788899999999975
No 206
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.26 E-value=0.001 Score=50.62 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=28.8
Q ss_pred HHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 029863 145 IATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 145 l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~ 183 (186)
.+.++||.++|++++ ||+ ..+.|..+.+.|.+.|+
T Consensus 159 ~a~~~gv~GvP~~vv--~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 159 EARQLGVFGVPTFVV--NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHTTCSSSSEEEE--TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHcCCcccCEEEE--CCE--EEEECCCCHHHHHHHhC
Confidence 556689999999988 776 67999999999998875
No 207
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.25 E-value=0.00055 Score=52.71 Aligned_cols=99 Identities=17% Similarity=0.335 Sum_probs=74.4
Q ss_pred ccccccChhHHHHHHHh--CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 029863 81 VEVPAVTDATWQSLVLD--SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVM 158 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i 158 (186)
.+|..+++..|-+.+.. .|-.|||..|...-+-|.-+...+++++.+|++ ++|+++-.... ...|-=...||++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c---IpNYPe~nlPTl~ 166 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC---IPNYPESNLPTLL 166 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc---cCCCcccCCCeEE
Confidence 45666777776555533 367899999999999999999999999999998 99998864432 2233346789999
Q ss_pred EEeCCeEEEEEeCCC-------CHHHHHHHHH
Q 029863 159 IFKNGEKKDTVIGAV-------PKSTLTTSIE 183 (186)
Q Consensus 159 ~~~~G~~~~~~~G~~-------~~~~l~~~l~ 183 (186)
+|..|.+...+.|.. +.++++.+|-
T Consensus 167 VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~ 198 (240)
T KOG3170|consen 167 VYHHGALKKQMIGLLELGGMNLTMEDVEDFLV 198 (240)
T ss_pred EeecchHHhheehhhhhcCCcCCHHHHHHHHH
Confidence 999998888777642 4566666553
No 208
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0033 Score=49.97 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=30.2
Q ss_pred hHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 143 PSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 143 ~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
..+++++|+.++||+++ .++ .+.|..+.++|.+.|++.
T Consensus 205 ~~~a~~~gv~gTPt~~v-~~~----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLAQQLGVNGTPTFIV-NGK----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHhcCCCcCCeEEE-CCe----eecCCCCHHHHHHHHHHh
Confidence 35778899999999955 333 688999999999988764
No 209
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.83 E-value=0.0028 Score=54.60 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=41.4
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHH---H---------cCCCcccEEEEEeCCe
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIAT---R---------YGIRSIPTVMIFKNGE 164 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~---~---------~~i~~~Pt~i~~~~G~ 164 (186)
|+.|..+|||+|++....|.+. ++.+-.+|+|+++...+ + .|.+.+|++++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 6678999999999999999885 48888899887763222 2 36788999955 554
No 210
>PTZ00062 glutaredoxin; Provisional
Probab=96.82 E-value=0.0053 Score=47.94 Aligned_cols=58 Identities=19% Similarity=0.345 Sum_probs=40.1
Q ss_pred CCcEEEEEE----CCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHH----cCCCcccEEEEEeCCe
Q 029863 99 GSPVLVEFW----APWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATR----YGIRSIPTVMIFKNGE 164 (186)
Q Consensus 99 ~k~vvv~F~----a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~----~~i~~~Pt~i~~~~G~ 164 (186)
..+|+|.-. .|||++|++....|.+. ++.+..+|+++++++.+. .|-+.+|.+++ +|+
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~ 177 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGE 177 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 455555333 37999999999888875 477778888877654433 46667888754 575
No 211
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.82 E-value=0.01 Score=44.60 Aligned_cols=65 Identities=25% Similarity=0.392 Sum_probs=53.3
Q ss_pred chHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC-eEEEEEeCC-CCHHHHHHHHHhh
Q 029863 117 IHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG-EKKDTVIGA-VPKSTLTTSIEKF 185 (186)
Q Consensus 117 ~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G-~~~~~~~G~-~~~~~l~~~l~~~ 185 (186)
....+.++++.+.+.+.|+.+. +.++++++++.. |++++++++ +....+.|. .+.+.|.+||...
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 4467899999999889999887 567999999988 999999874 334568887 7999999999753
No 212
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0042 Score=43.28 Aligned_cols=60 Identities=27% Similarity=0.498 Sum_probs=39.9
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh-HHHH----HcCCCcccEEEEEeCCe
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-SIAT----RYGIRSIPTVMIFKNGE 164 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~-~l~~----~~~i~~~Pt~i~~~~G~ 164 (186)
+..+||+ |..+||++|++....|.+ +.....++.+|-+.+. ++-+ --|-+.+|.+++ +|+
T Consensus 12 ~~~~VVi-fSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk 76 (104)
T KOG1752|consen 12 SENPVVI-FSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK 76 (104)
T ss_pred hcCCEEE-EECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence 3455555 899999999997777777 3444667777665443 3333 335678899865 675
No 213
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.78 E-value=0.0077 Score=47.50 Aligned_cols=38 Identities=34% Similarity=0.632 Sum_probs=30.4
Q ss_pred HHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 145 IATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 145 l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
.++++||+++|+|+| +|+ ..+.|..+.+.+.+.|.+++
T Consensus 176 ~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~ 213 (225)
T COG2761 176 AAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLL 213 (225)
T ss_pred HHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHH
Confidence 566789999999977 443 35889999999999888753
No 214
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.30 E-value=0.041 Score=37.98 Aligned_cols=94 Identities=10% Similarity=0.218 Sum_probs=69.7
Q ss_pred hhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCC----ccc-EEEEE
Q 029863 88 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE--SPSIATRYGIR----SIP-TVMIF 160 (186)
Q Consensus 88 ~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~--~~~l~~~~~i~----~~P-t~i~~ 160 (186)
-.+|+++. .-.+.|++.|..+- ..-......+.++++...+.-.+..|||.+ ...+|+.+.|. --| ++..|
T Consensus 9 ~KdfKKLL-RTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHY 86 (112)
T cd03067 9 HKDFKKLL-RTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHY 86 (112)
T ss_pred hHHHHHHH-hhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcc
Confidence 36777754 44566777666553 334445567889999999988999999987 67899999998 555 47778
Q ss_pred eCCeEEEEEeCCCCHHHHHHHHH
Q 029863 161 KNGEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 161 ~~G~~~~~~~G~~~~~~l~~~l~ 183 (186)
+||.--..|....+...+..|+.
T Consensus 87 KdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 87 KDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred cCCCccccccchhhHHHHHHHhh
Confidence 99987666777777888888775
No 215
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.28 E-value=0.093 Score=35.81 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=54.7
Q ss_pred CCcE-EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE-EEEeCCCCHH
Q 029863 99 GSPV-LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK-DTVIGAVPKS 176 (186)
Q Consensus 99 ~k~v-vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~-~~~~G~~~~~ 176 (186)
.++| ++.|.+.. .+|..+...+++++... +++.+...+.++ ..|++.+.++|+.. -++.|...-.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence 4555 55666655 99999999999987764 567775544322 47999888777432 3899998888
Q ss_pred HHHHHHHhhC
Q 029863 177 TLTTSIEKFL 186 (186)
Q Consensus 177 ~l~~~l~~~l 186 (186)
++..+|..++
T Consensus 85 Ef~Slilai~ 94 (94)
T cd02974 85 EFTSLVLALL 94 (94)
T ss_pred hHHHHHHHhC
Confidence 8999887664
No 216
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.25 E-value=0.0017 Score=53.16 Aligned_cols=85 Identities=22% Similarity=0.436 Sum_probs=64.9
Q ss_pred CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEe-CCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHH
Q 029863 99 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVN-TDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKST 177 (186)
Q Consensus 99 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~-~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~ 177 (186)
..++=+.||+.|||..+.++|.++-....|.. +....++ .-.-+.+..+||+.+.|++++...- -..++.|...-+.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t-~~~~~~~~r~l~s 153 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT-CPASYRGERDLAS 153 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeeccc-cchhhcccccHHH
Confidence 56888899999999999999999888777764 4444332 2334678899999999998665433 3347888888888
Q ss_pred HHHHHHhh
Q 029863 178 LTTSIEKF 185 (186)
Q Consensus 178 l~~~l~~~ 185 (186)
|.++..++
T Consensus 154 Lv~fy~~i 161 (319)
T KOG2640|consen 154 LVNFYTEI 161 (319)
T ss_pred HHHHHHhh
Confidence 98888765
No 217
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.11 E-value=0.057 Score=39.34 Aligned_cols=73 Identities=27% Similarity=0.430 Sum_probs=56.9
Q ss_pred cEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC----cccEEEEEeCCeEEEEEeCCCCHH
Q 029863 101 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIR----SIPTVMIFKNGEKKDTVIGAVPKS 176 (186)
Q Consensus 101 ~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~----~~Pt~i~~~~G~~~~~~~G~~~~~ 176 (186)
.-++.|++|.|+=|......++. ..+++-.+..|+-..+-++|||. +=-|.++ ||. .++|-++.+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy---~vEGHVPa~ 94 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY---YVEGHVPAE 94 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE---EEeccCCHH
Confidence 34777899999999988777774 34888888888888888899984 2335544 674 578899999
Q ss_pred HHHHHHHh
Q 029863 177 TLTTSIEK 184 (186)
Q Consensus 177 ~l~~~l~~ 184 (186)
.+..++++
T Consensus 95 aI~~ll~~ 102 (149)
T COG3019 95 AIARLLAE 102 (149)
T ss_pred HHHHHHhC
Confidence 99999874
No 218
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.91 E-value=0.099 Score=35.87 Aligned_cols=91 Identities=12% Similarity=0.189 Sum_probs=59.6
Q ss_pred ChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC-CeE
Q 029863 87 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN-GEK 165 (186)
Q Consensus 87 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~-G~~ 165 (186)
+.+++++.+......++|-|+..--. .....+.+++..+.++..|+... +.++++.+++. .|.++++++ .+.
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~e~ 79 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEPFMEE 79 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCCCCC
Confidence 34556665531455555555554333 45667888998887777775543 33677888774 688888865 333
Q ss_pred EEEE-eCCCCHHHHHHHHHh
Q 029863 166 KDTV-IGAVPKSTLTTSIEK 184 (186)
Q Consensus 166 ~~~~-~G~~~~~~l~~~l~~ 184 (186)
...+ .|..+.+.|.+||+.
T Consensus 80 ~~~y~~g~~~~~~l~~fi~~ 99 (102)
T cd03066 80 PVTIPDKPYSEEELVDFVEE 99 (102)
T ss_pred CcccCCCCCCHHHHHHHHHH
Confidence 3346 677889999999974
No 219
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.041 Score=41.27 Aligned_cols=107 Identities=20% Similarity=0.275 Sum_probs=73.2
Q ss_pred ccccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCc-eEEEEEeCCC--------ChH----H
Q 029863 79 TAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK-LKCYKVNTDE--------SPS----I 145 (186)
Q Consensus 79 ~~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~~d~--------~~~----l 145 (186)
....+.+++++.+ .+..-.||++|+.=-|+-|+.=......+.+|.++|.+. +.++...|.. +.+ +
T Consensus 15 ydf~~~d~~G~~v-~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~ 93 (171)
T KOG1651|consen 15 YDFSAKDLDGEYV-SLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFV 93 (171)
T ss_pred eeeEEecCCCCCc-cHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHH
Confidence 3455566666544 234557999998889999999998889999999999664 7777776631 111 2
Q ss_pred HHHcCCC-------------------------------c----ccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 146 ATRYGIR-------------------------------S----IPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 146 ~~~~~i~-------------------------------~----~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
..+|+.. . +=-+++.+||+++.|+.-..++.+++.-|+++|
T Consensus 94 ~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL 169 (171)
T KOG1651|consen 94 KVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL 169 (171)
T ss_pred HhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence 2344331 1 123666789999999987777777776677654
No 220
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.72 E-value=0.077 Score=39.28 Aligned_cols=54 Identities=17% Similarity=0.380 Sum_probs=38.9
Q ss_pred EEEEECC------CCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHH----HHcCC----CcccEEEEEeCCe
Q 029863 103 LVEFWAP------WCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIA----TRYGI----RSIPTVMIFKNGE 164 (186)
Q Consensus 103 vv~F~a~------wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~----~~~~i----~~~Pt~i~~~~G~ 164 (186)
|+.|+++ +|++|++....|+.+ +|.+..+|++.++++. +.++- ..+|.+++ +|+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~ 69 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGR 69 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCE
Confidence 3445666 899999999999885 4888889998776544 34454 57888754 564
No 221
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.63 E-value=0.093 Score=46.47 Aligned_cols=84 Identities=12% Similarity=0.104 Sum_probs=58.8
Q ss_pred HHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE-EE
Q 029863 90 TWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK-DT 168 (186)
Q Consensus 90 ~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~-~~ 168 (186)
++..+...=.++|-+.++...|.+|.++...++++++.. +++++...+.+ ...|++.+.++|+.. -+
T Consensus 9 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~ 76 (517)
T PRK15317 9 QLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD-----------VRKPSFSITRPGEDTGVR 76 (517)
T ss_pred HHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC-----------CCCCEEEEEcCCccceEE
Confidence 344433333666655555558999999999999988765 56776543322 347999888877543 38
Q ss_pred EeCCCCHHHHHHHHHhh
Q 029863 169 VIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 169 ~~G~~~~~~l~~~l~~~ 185 (186)
|.|...-.++..||+.+
T Consensus 77 f~g~P~g~Ef~s~i~~i 93 (517)
T PRK15317 77 FAGIPMGHEFTSLVLAL 93 (517)
T ss_pred EEecCccHHHHHHHHHH
Confidence 99998888888888765
No 222
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.35 E-value=0.18 Score=39.43 Aligned_cols=105 Identities=19% Similarity=0.279 Sum_probs=67.8
Q ss_pred ccccccChhHHHHHHHhCCCcEEEEEECCCCc-ccccchHHHHHHHHHhc----CceEEEEEeCCC---Ch---------
Q 029863 81 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCG-PCRMIHPIIDELSKQYV----GKLKCYKVNTDE---SP--------- 143 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~-~C~~~~p~l~~l~~~~~----~~v~~~~v~~d~---~~--------- 143 (186)
.++.+-+++.+... .-.|++++|+|.=+.|+ .|-.....+..+.++.. .++.++.|.+|- .+
T Consensus 50 f~l~d~~G~~~~~~-~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 50 FELTDQDGKPFTLK-DLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred eeeecCCCCEeecc-ccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 44444455555332 23799999999988887 59888888888777765 236666665542 12
Q ss_pred -----------------HHHHHcCCCc---------------ccEEEEE-eCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 144 -----------------SIATRYGIRS---------------IPTVMIF-KNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 144 -----------------~l~~~~~i~~---------------~Pt~i~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
++++.|+|.. ...++++ .+|+....+.+..+++++.+.|++++
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~ 204 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL 204 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence 3555555542 1223344 59998888887777888888887653
No 223
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.16 Score=39.23 Aligned_cols=87 Identities=18% Similarity=0.283 Sum_probs=60.5
Q ss_pred CCcEEEEEE-CCCCcccccchHHHHHHHHHhcC-ceEEEEEeCC----------------------------CChHHHHH
Q 029863 99 GSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTD----------------------------ESPSIATR 148 (186)
Q Consensus 99 ~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d----------------------------~~~~l~~~ 148 (186)
+|.+|+.|| +.--+.|--....+.+.++++.. +++++.+++| .+.++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 588888888 56677888888888888888765 3788888765 34478999
Q ss_pred cCCCc----cc---EEEEEeCCeEEEEEeCC----CCHHHHHHHHHhh
Q 029863 149 YGIRS----IP---TVMIFKNGEKKDTVIGA----VPKSTLTTSIEKF 185 (186)
Q Consensus 149 ~~i~~----~P---t~i~~~~G~~~~~~~G~----~~~~~l~~~l~~~ 185 (186)
||+.. .. ++++.++|.+....... ++.+++.+.|+.+
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 99853 22 46666788877655533 3466676666643
No 224
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.31 E-value=0.054 Score=35.09 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=47.7
Q ss_pred EEEEEECCCCcccccchHHHHHHHHHh-cCceEEEEEeCCCChHHHHHcCCCcccEEEEE
Q 029863 102 VLVEFWAPWCGPCRMIHPIIDELSKQY-VGKLKCYKVNTDESPSIATRYGIRSIPTVMIF 160 (186)
Q Consensus 102 vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~ 160 (186)
++..|-+..-+..++....+.++.+++ ++...+-.+|+.+++++++.++|-.+||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 455566666688888888888877776 45689999999999999999999999997544
No 225
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.29 E-value=0.14 Score=45.28 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=58.6
Q ss_pred HHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE-EE
Q 029863 90 TWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK-DT 168 (186)
Q Consensus 90 ~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~-~~ 168 (186)
+++.....=.++|-+.++...|.+|.++...++++++.. +++.+...+.++ ...|++.++++|+.. -+
T Consensus 9 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~ 77 (515)
T TIGR03140 9 QLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADT----------LRKPSFTILRDGADTGIR 77 (515)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCc----------CCCCeEEEecCCcccceE
Confidence 344433333566655444447999999999999988764 567775544332 356999888877643 48
Q ss_pred EeCCCCHHHHHHHHHhh
Q 029863 169 VIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 169 ~~G~~~~~~l~~~l~~~ 185 (186)
|.|...-.++..+|+.+
T Consensus 78 f~g~P~g~Ef~s~i~~i 94 (515)
T TIGR03140 78 FAGIPGGHEFTSLVLAI 94 (515)
T ss_pred EEecCCcHHHHHHHHHH
Confidence 99988888888888765
No 226
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.27 E-value=0.12 Score=33.38 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=42.0
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh----HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP----SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 178 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~----~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l 178 (186)
+..++.++|++|++.+-.+.+. + +.+-.++++... ++.+.-+...+|+++..++|..+ .....|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-----g-i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l------~es~~I 69 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-----E-LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQM------FESADI 69 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-----C-CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEE------EcHHHH
Confidence 3456778999999988888876 2 444445554432 33333345678998432234322 245667
Q ss_pred HHHHHh
Q 029863 179 TTSIEK 184 (186)
Q Consensus 179 ~~~l~~ 184 (186)
.++|++
T Consensus 70 ~~yL~~ 75 (77)
T cd03041 70 VKYLFK 75 (77)
T ss_pred HHHHHH
Confidence 777765
No 227
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.16 E-value=0.33 Score=33.38 Aligned_cols=89 Identities=11% Similarity=0.197 Sum_probs=58.3
Q ss_pred hhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEe------
Q 029863 88 DATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFK------ 161 (186)
Q Consensus 88 ~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~------ 161 (186)
.+++++.+ ...++++|-|+..--. .....+.+++..+.++..|+.... .++++.|++ .|++++|+
T Consensus 8 ~~~l~~f~-~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~---~~~~~~~~~--~~~ivl~~p~~~~~ 78 (104)
T cd03069 8 EAEFEKFL-SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSD---KQLLEKYGY--GEGVVLFRPPRLSN 78 (104)
T ss_pred HHHHHHHh-ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEECh---HHHHHhcCC--CCceEEEechhhhc
Confidence 44565544 3556666656555332 466788889998877777755443 467889998 67777772
Q ss_pred CC-eEEEEEeCCCCHHHHHHHHHhh
Q 029863 162 NG-EKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 162 ~G-~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
+- +....+.|..+.+.|.+||+..
T Consensus 79 k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 79 KFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred ccCcccccccCcCCHHHHHHHHHhh
Confidence 11 2223478888889999999753
No 228
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.071 Score=41.16 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=32.4
Q ss_pred HHHHHcCCCcccEEEEEeCCeEEEEEeC--CCCHHHHHHHHHhh
Q 029863 144 SIATRYGIRSIPTVMIFKNGEKKDTVIG--AVPKSTLTTSIEKF 185 (186)
Q Consensus 144 ~l~~~~~i~~~Pt~i~~~~G~~~~~~~G--~~~~~~l~~~l~~~ 185 (186)
.+++++|+.++||+++-+||+....-.| ....+.+..++.+.
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~ 208 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQR 208 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHH
Confidence 3677899999999999999987665556 45677888777654
No 229
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.03 E-value=0.12 Score=32.78 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=38.0
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC-ChHHHHHcCCCcccEEEEEeCCeE
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-SPSIATRYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~-~~~l~~~~~i~~~Pt~i~~~~G~~ 165 (186)
..|+.+||++|++..-.+++..- .+....++... .+++.+......+|++ ...+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L-~~~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVL-VLGNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEE-EECCCcE
Confidence 35788999999999888877521 24555665543 3456565667789999 4445654
No 230
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=94.67 E-value=0.16 Score=32.04 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=38.5
Q ss_pred EEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 029863 105 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 105 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~ 183 (186)
.++.++|++|++..-.+....- .+....++.++.....+..+-..+|++ ++++|..+ .+...+.++|+
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~~~~~~~~~~vP~L-~~~~~~~l------~es~aI~~yL~ 70 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEATPIRMIGAKQVPIL-EKDDGSFM------AESLDIVAFID 70 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHHHHHhcCCCccCEE-EeCCCeEe------ehHHHHHHHHh
Confidence 4678899999988888877521 123333443333333344445678988 34445432 23555656554
No 231
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=94.58 E-value=0.14 Score=34.45 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=56.2
Q ss_pred cEEEEEECCCCcccccchHHHHHHHHHh-cCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCC
Q 029863 101 PVLVEFWAPWCGPCRMIHPIIDELSKQY-VGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 174 (186)
Q Consensus 101 ~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~ 174 (186)
.++=.|.+..-+.++.....+.++.+++ .+...+-.+|+.++|++++.++|-.+||++-.-.+ .+.++.|..+
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGdls 77 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGDLS 77 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-Ccceeecccc
Confidence 4555666777788888888888876654 55588888999999999999999999997544333 4567888764
No 232
>PRK09301 circadian clock protein KaiB; Provisional
Probab=94.55 E-value=0.13 Score=35.55 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=58.4
Q ss_pred CCcEEEEEECCCCcccccchHHHHHHHHHh-cCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCC
Q 029863 99 GSPVLVEFWAPWCGPCRMIHPIIDELSKQY-VGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 174 (186)
Q Consensus 99 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~ 174 (186)
+..++=.|.+..-+..+.....+.++.+.+ .+...+-.||+.++|++++.++|-.+||++-.-.+ .+.++.|..+
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-P~rriiGDls 80 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP-PVRKIIGDLS 80 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-Ccceeecccc
Confidence 455666777888888888888888876654 55588888999999999999999999997544333 4567888764
No 233
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=94.52 E-value=0.29 Score=31.36 Aligned_cols=71 Identities=15% Similarity=0.345 Sum_probs=43.3
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC--ChHHHHHcCCCcccEEEEEe--CCeEEEEEeCCCCHHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE--SPSIATRYGIRSIPTVMIFK--NGEKKDTVIGAVPKSTL 178 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~--~~~l~~~~~i~~~Pt~i~~~--~G~~~~~~~G~~~~~~l 178 (186)
+..|+.++|++|++.+-.+.+. + +.+-.++.+. ..++ +.-+...+|+++.-+ +|..+ .....+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----g-i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l------~eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----G-IPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL------VDSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----C-CceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE------EcHHHH
Confidence 3467889999999999888775 2 4444444432 2233 334567899986542 24322 245667
Q ss_pred HHHHHhhC
Q 029863 179 TTSIEKFL 186 (186)
Q Consensus 179 ~~~l~~~l 186 (186)
.++|++.|
T Consensus 69 ~~yL~~~~ 76 (77)
T cd03040 69 ISTLKTYL 76 (77)
T ss_pred HHHHHHHc
Confidence 77777653
No 234
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=94.39 E-value=1.4 Score=32.15 Aligned_cols=90 Identities=6% Similarity=0.084 Sum_probs=60.5
Q ss_pred HhCCCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEEeCCCCh------------------HHHHHcCCCcc
Q 029863 96 LDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDESP------------------SIATRYGIRSI 154 (186)
Q Consensus 96 ~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v~~d~~~------------------~l~~~~~i~~~ 154 (186)
....|+.+|+...+.-..+..+-..+ +++.+-..+++.++.-|+.... ..++.++...+
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 34589999999987764443333322 3333334467888888865542 24566789999
Q ss_pred cEEEEE-eC-C--eEEEEEeCCCCHHHHHHHHHhh
Q 029863 155 PTVMIF-KN-G--EKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 155 Pt~i~~-~~-G--~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
|.+.++ +. + +++.++.|..+.+++...|.+.
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ 132 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEA 132 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHH
Confidence 987666 22 2 6788999999999998777653
No 235
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.34 Score=36.60 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=54.2
Q ss_pred eccccccccccccChhHHHHHHHhCCCcEEEEEE-CCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC----------
Q 029863 74 CEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE---------- 141 (186)
Q Consensus 74 ~~~~~~~~~v~~l~~~~~~~~~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~---------- 141 (186)
.+...++..+.+-++..+.-.....+++||++|| +..-|.|-...--+++-+++++. ...++.+..|+
T Consensus 65 ~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sK 144 (211)
T KOG0855|consen 65 KGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASK 144 (211)
T ss_pred cCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhh
Confidence 3455556666666665553333345678888888 45566777666555555554433 35555555443
Q ss_pred -----------ChHHHHHcCCCccc--------EEEEEeCCeEEE
Q 029863 142 -----------SPSIATRYGIRSIP--------TVMIFKNGEKKD 167 (186)
Q Consensus 142 -----------~~~l~~~~~i~~~P--------t~i~~~~G~~~~ 167 (186)
..++.+.+|..+.| +++|.++|.+..
T Consensus 145 qnlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ 189 (211)
T KOG0855|consen 145 QNLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQL 189 (211)
T ss_pred ccCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEE
Confidence 33567777776543 465555554433
No 236
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.14 Score=33.39 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=37.4
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh----------------HHHHHcCCCcccEEEEEeCCeEE
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP----------------SIATRYGIRSIPTVMIFKNGEKK 166 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~----------------~l~~~~~i~~~Pt~i~~~~G~~~ 166 (186)
+.|++..||.|-.....++++ ++.+-.|++.+.. +-.+..|--|+|++ +..||+++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPal-l~~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPAL-LTDDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHc------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEE-EeCCCcEE
Confidence 569999999998777777776 2445555543321 23445677799999 55677654
No 237
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=93.82 E-value=0.43 Score=33.60 Aligned_cols=45 Identities=16% Similarity=0.409 Sum_probs=30.4
Q ss_pred cchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeC
Q 029863 116 MIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKN 162 (186)
Q Consensus 116 ~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~ 162 (186)
.+.+.+..+.+...+.-.. .++.-+|.+.++|+|+.+|++++.++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 5555555554444332122 45555789999999999999988877
No 238
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=93.30 E-value=0.3 Score=35.37 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=31.1
Q ss_pred EeCCCChHHHHHcCCCcccEEEEEeCCe-----------EEEEEeCCCCHHH
Q 029863 137 VNTDESPSIATRYGIRSIPTVMIFKNGE-----------KKDTVIGAVPKST 177 (186)
Q Consensus 137 v~~d~~~~l~~~~~i~~~Pt~i~~~~G~-----------~~~~~~G~~~~~~ 177 (186)
.++.-+|.+.++|+|+.+|++++.+++. ....+.|.++-+.
T Consensus 55 ~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ 106 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKG 106 (130)
T ss_pred CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHH
Confidence 3444578999999999999999988774 3457778776443
No 239
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=92.98 E-value=0.52 Score=29.48 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=36.4
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEeCCe
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE----SPSIATRYGIRSIPTVMIFKNGE 164 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~----~~~l~~~~~i~~~Pt~i~~~~G~ 164 (186)
..|+.++|++|++..-.+.+..- ..+...++..+ .+++.+......+|++.. .+|.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~ 61 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI----DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGT 61 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC----CceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCC
Confidence 35778899999999998887622 23444555422 345566566678899954 4554
No 240
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=92.53 E-value=1.3 Score=31.42 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=51.0
Q ss_pred CcEEEEEEC-CCCcccccchHHHHHHHHHhcCc-eEEEEEe-CCCCh-----------HHHHHcCCC--cccEEEEEeCC
Q 029863 100 SPVLVEFWA-PWCGPCRMIHPIIDELSKQYVGK-LKCYKVN-TDESP-----------SIATRYGIR--SIPTVMIFKNG 163 (186)
Q Consensus 100 k~vvv~F~a-~wC~~C~~~~p~l~~l~~~~~~~-v~~~~v~-~d~~~-----------~l~~~~~i~--~~Pt~i~~~~G 163 (186)
+.+||.|.- ..-+.=+.....+.+-...+.++ +.++.+- -.... .+.++|++. ++-.+++-|+|
T Consensus 10 ~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG 89 (118)
T PF13778_consen 10 NRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDG 89 (118)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCC
Confidence 344554442 23333334444454433344443 5555552 22222 788899975 33345555899
Q ss_pred eEEEEEeCCCCHHHHHHHHHh
Q 029863 164 EKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 164 ~~~~~~~G~~~~~~l~~~l~~ 184 (186)
.+..++....+.++|.+.|+.
T Consensus 90 ~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 90 GVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred cEEEecCCCCCHHHHHHHHhC
Confidence 999999999999999999875
No 241
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=92.05 E-value=0.23 Score=37.62 Aligned_cols=59 Identities=20% Similarity=0.157 Sum_probs=39.3
Q ss_pred ccccccChhHHHHHHHhCCCcEEEEEECCCC-cccccchHHHHHHHHHhc---CceEEEEEeCC
Q 029863 81 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWC-GPCRMIHPIIDELSKQYV---GKLKCYKVNTD 140 (186)
Q Consensus 81 ~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC-~~C~~~~p~l~~l~~~~~---~~v~~~~v~~d 140 (186)
.++.+-+++.+.. ..-.||++||.|.-+.| ..|-.....+.++.+++. .+++++.|.+|
T Consensus 35 f~L~d~~G~~~~~-~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 35 FTLTDQDGKTVTL-DDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp -EEEETTSSEEEG-GGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred cEEEcCCCCEecH-HHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 3444444444432 22369999999999999 568888888877776654 35888888876
No 242
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=91.92 E-value=4.8 Score=32.41 Aligned_cols=71 Identities=24% Similarity=0.385 Sum_probs=43.9
Q ss_pred cccccChhHHHHHHHhCCCcEEEEEECCC------CcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHH----cCC
Q 029863 82 EVPAVTDATWQSLVLDSGSPVLVEFWAPW------CGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATR----YGI 151 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~~~~k~vvv~F~a~w------C~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~----~~i 151 (186)
....+++.+.+- +..=+++|-|.+|.+- -..=+.+...|+++...-++++++-.+|-+.+++.+++ |||
T Consensus 8 k~ysLS~~T~~~-L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 8 KRYSLSDQTKKV-LKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred CCccCCHHHHHH-HHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 344455555532 3334667777666554 33334444455555554455899999999888777766 888
Q ss_pred Cc
Q 029863 152 RS 153 (186)
Q Consensus 152 ~~ 153 (186)
..
T Consensus 87 ~~ 88 (271)
T PF09822_consen 87 QP 88 (271)
T ss_pred Cc
Confidence 76
No 243
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=91.66 E-value=0.19 Score=38.37 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=29.9
Q ss_pred ChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 029863 142 SPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 142 ~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~ 183 (186)
+.+.+.++||.++||+++ ||+. .+.|..+.+.+.+.|+
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQALR 201 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHhC
Confidence 346778899999999977 5543 4789999999988763
No 244
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=91.62 E-value=0.14 Score=35.27 Aligned_cols=75 Identities=8% Similarity=0.121 Sum_probs=43.0
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh----HHHHHcCCCcccE-EEEEeCCeEEEEE----eCCCC
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP----SIATRYGIRSIPT-VMIFKNGEKKDTV----IGAVP 174 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~----~l~~~~~i~~~Pt-~i~~~~G~~~~~~----~G~~~ 174 (186)
..|+.++|++|++....|++. ++.+-.+|+.+++ ++.+-++-.+.+. -++-++|...... ....+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls 75 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELS 75 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCC
Confidence 468999999999998888874 4667777765532 3333333333322 1223333222111 23456
Q ss_pred HHHHHHHHHh
Q 029863 175 KSTLTTSIEK 184 (186)
Q Consensus 175 ~~~l~~~l~~ 184 (186)
.+++.++|.+
T Consensus 76 ~~e~~~~l~~ 85 (105)
T cd02977 76 DEEALELMAE 85 (105)
T ss_pred HHHHHHHHHh
Confidence 7777777654
No 245
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=91.49 E-value=1.9 Score=27.41 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=46.7
Q ss_pred EEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC-ChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 029863 105 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-SPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 105 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~-~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~ 183 (186)
.++.++|++|++..-.++... =.+++..++..+ ..++.+...-..+|++. .+|..+ .+...|.++|+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~----i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l------~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKG----IPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL------TDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHT----EEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE------ESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcC----CeEEEeccCcccchhHHHhhcccccceEEE--ECCEEE------eCHHHHHHHHH
Confidence 367899999999988887752 125556666554 35676777778899996 567643 24666777776
Q ss_pred h
Q 029863 184 K 184 (186)
Q Consensus 184 ~ 184 (186)
+
T Consensus 69 ~ 69 (75)
T PF13417_consen 69 E 69 (75)
T ss_dssp H
T ss_pred H
Confidence 5
No 246
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=90.88 E-value=1.9 Score=37.16 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=55.8
Q ss_pred CCCcEEEEEECCCCcccccchH-HH-HHH-HHHhcCceEEEEEeCC--CChHHHHHcCCCcccEEEEE-eCCeEEEEEeC
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHP-II-DEL-SKQYVGKLKCYKVNTD--ESPSIATRYGIRSIPTVMIF-KNGEKKDTVIG 171 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p-~l-~~l-~~~~~~~v~~~~v~~d--~~~~l~~~~~i~~~Pt~i~~-~~G~~~~~~~G 171 (186)
.++.++|.|-+-..-..+.+.. .| ... .......+..++|+.. ...++..-|-+-.+|.++++ ++|..+.++.|
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg 96 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITG 96 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeec
Confidence 3455655566555555555542 22 221 2222222444555443 23567778888999997666 79999999999
Q ss_pred CCCHHHHHHHHHhh
Q 029863 172 AVPKSTLTTSIEKF 185 (186)
Q Consensus 172 ~~~~~~l~~~l~~~ 185 (186)
.+..++|..-|++.
T Consensus 97 ~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 97 FVTADELASSIEKV 110 (506)
T ss_pred cccHHHHHHHHHHH
Confidence 99999998888764
No 247
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=90.81 E-value=0.43 Score=36.07 Aligned_cols=31 Identities=32% Similarity=0.761 Sum_probs=26.7
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceE
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLK 133 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~ 133 (186)
|.+|+++.||+|....+.++++.++++.++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~ 33 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGIE 33 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCce
Confidence 6789999999999999999999999854443
No 248
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=1.2 Score=37.85 Aligned_cols=94 Identities=16% Similarity=0.241 Sum_probs=66.0
Q ss_pred cccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC
Q 029863 84 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 163 (186)
Q Consensus 84 ~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G 163 (186)
+.++++-++++..-.+..-+=.|+.-.|..|-.....+.-++-..+ ++....+|-.--++-.+.-+|+++||+++ ||
T Consensus 101 pk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp-~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nG 177 (520)
T COG3634 101 PKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNP-RIKHTAIDGALFQDEVEARNIMAVPTVFL--NG 177 (520)
T ss_pred CchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCC-CceeEEecchhhHhHHHhccceecceEEE--cc
Confidence 4445555555434457777888889999999999998888766654 48888888766666677779999999854 77
Q ss_pred eEEEEEeCCCCHHHHHHHH
Q 029863 164 EKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 164 ~~~~~~~G~~~~~~l~~~l 182 (186)
++- -.|.++-+++..-|
T Consensus 178 e~f--g~GRmtleeilaki 194 (520)
T COG3634 178 EEF--GQGRMTLEEILAKI 194 (520)
T ss_pred hhh--cccceeHHHHHHHh
Confidence 643 23555555555443
No 249
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=90.32 E-value=0.73 Score=27.80 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=33.3
Q ss_pred EEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh--HHHHHcCCCcccEEEE
Q 029863 105 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP--SIATRYGIRSIPTVMI 159 (186)
Q Consensus 105 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~--~l~~~~~i~~~Pt~i~ 159 (186)
.|+.++|+.|++..-.++...- .+....++.++.. ++.+..+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 5778999999988888877622 2444445443322 2455567778998754
No 250
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=90.12 E-value=2.5 Score=26.35 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=40.9
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC-ChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-SPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~-~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l 182 (186)
..|+.++|++|++..-.+++..-. .....++.+. .+++.+......+|++. .+|..+ .....+.++|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l------~es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS----VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVL------YESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc----cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEE------EcHHHHHHHH
Confidence 457889999999998888775221 3333444433 34555555566889773 344322 2345566665
Q ss_pred Hh
Q 029863 183 EK 184 (186)
Q Consensus 183 ~~ 184 (186)
++
T Consensus 70 ~~ 71 (73)
T cd03059 70 DE 71 (73)
T ss_pred Hh
Confidence 53
No 251
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=89.75 E-value=0.61 Score=32.65 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=44.2
Q ss_pred cccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC
Q 029863 82 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE 141 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~ 141 (186)
.+.+++++.+. +..-+||++||.=.|+-|+.=. ....|++|.++|.+ .+.++...++.
T Consensus 5 ~~~~~~G~~v~-l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 5 SAKDIDGKPVS-LSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp EEEBTTSSEEE-GGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred eeeCCCCCEEC-HHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 34455555442 2344689999988999999999 88899999999985 48898888753
No 252
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=89.66 E-value=0.45 Score=34.34 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=26.0
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP 143 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~ 143 (186)
+..|+.+||+.|++....|++. ++.+-.+|+.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4568899999999988888774 3666667665443
No 253
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=89.45 E-value=0.34 Score=33.84 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=26.6
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP 143 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~ 143 (186)
..|+.++|+.|++....|++. ++.+-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCc
Confidence 468899999999999888873 4777777776553
No 254
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=89.36 E-value=0.48 Score=33.38 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=27.0
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCCh
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP 143 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~ 143 (186)
..|+.++|+.|++....+++. ++.+-.+|+.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 467899999999999888873 4777788876654
No 255
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=89.26 E-value=5.9 Score=27.80 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=64.7
Q ss_pred CCcEEEEEECCCCcccccchHHHHHHHHHhcCc--eEEEEEeCCCChHHHH----HcCCC-cccEEEEEe--CCe-EEEE
Q 029863 99 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK--LKCYKVNTDESPSIAT----RYGIR-SIPTVMIFK--NGE-KKDT 168 (186)
Q Consensus 99 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~--v~~~~v~~d~~~~l~~----~~~i~-~~Pt~i~~~--~G~-~~~~ 168 (186)
+...++.|-..--+.-.++.+.++++++++.++ +.++.||-|+-|-+.. .|+|. .-|.+=+.+ +.+ +=..
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 567788899999999999999999999998764 9999999999876654 46765 347764442 221 2112
Q ss_pred EeC---CCCHHHHHHHHHhhC
Q 029863 169 VIG---AVPKSTLTTSIEKFL 186 (186)
Q Consensus 169 ~~G---~~~~~~l~~~l~~~l 186 (186)
..+ ..+.++|..||+.+|
T Consensus 100 m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred cccccccCcHHHHHHHHHhhC
Confidence 222 367889999998765
No 256
>PHA03075 glutaredoxin-like protein; Provisional
Probab=89.10 E-value=0.46 Score=33.57 Aligned_cols=29 Identities=31% Similarity=0.661 Sum_probs=25.9
Q ss_pred CcEEEEEECCCCcccccchHHHHHHHHHh
Q 029863 100 SPVLVEFWAPWCGPCRMIHPIIDELSKQY 128 (186)
Q Consensus 100 k~vvv~F~a~wC~~C~~~~p~l~~l~~~~ 128 (186)
|.+++.|..|-|+-|+.....+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56899999999999999999998887666
No 257
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=88.40 E-value=6.4 Score=27.17 Aligned_cols=91 Identities=10% Similarity=0.100 Sum_probs=55.3
Q ss_pred ChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEE------
Q 029863 87 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIF------ 160 (186)
Q Consensus 87 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~------ 160 (186)
+.+++++.+...++.+||-|+..--+ .....+.+++..+.++..|+.... .++.+++++.. |.+++|
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~~~-~~vvl~rp~~~~ 79 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---SEIFKSLKVSP-GQLVVFQPEKFQ 79 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---HHHHHhcCCCC-CceEEECcHHHh
Confidence 34556664444425666655555332 456778899999877788755443 47788888864 555566
Q ss_pred -eCCeEEEEEeCC-CCHHH-HHHHHHh
Q 029863 161 -KNGEKKDTVIGA-VPKST-LTTSIEK 184 (186)
Q Consensus 161 -~~G~~~~~~~G~-~~~~~-l~~~l~~ 184 (186)
+=-+....+.|. ...+. |.+||++
T Consensus 80 ~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 80 SKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred hhcCcceeeeeccccchHHHHHHHHhc
Confidence 211122345666 55555 9999875
No 258
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=87.73 E-value=3.4 Score=33.47 Aligned_cols=88 Identities=20% Similarity=0.278 Sum_probs=53.7
Q ss_pred CCCcEEEEEECCCCcc-cccchHHHHHHHHHhcCc--e----EEEEEeCCCC--------------------------hH
Q 029863 98 SGSPVLVEFWAPWCGP-CRMIHPIIDELSKQYVGK--L----KCYKVNTDES--------------------------PS 144 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~-C~~~~p~l~~l~~~~~~~--v----~~~~v~~d~~--------------------------~~ 144 (186)
.||.++++|.-+.||. |-.....+..+..+...+ + .|+.+|-+.+ .+
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 5899999999999985 776666665555554432 1 3445544221 24
Q ss_pred HHHHcCCCcc--c-----------EEEEE---eCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 145 IATRYGIRSI--P-----------TVMIF---KNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 145 l~~~~~i~~~--P-----------t~i~~---~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
+|+.|.|.-- | ++++| .+|+-+..+--..+++++.+-|.+.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~ 274 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKH 274 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHH
Confidence 6677766311 1 33333 5887776444457888887776543
No 259
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=87.71 E-value=2.8 Score=27.70 Aligned_cols=57 Identities=9% Similarity=0.197 Sum_probs=36.2
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC-hHHHHHcCCCcccEEEEEeCCe
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES-PSIATRYGIRSIPTVMIFKNGE 164 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~-~~l~~~~~i~~~Pt~i~~~~G~ 164 (186)
+..|+.+.|++|++..-.+.+..- .+....++.++. .++.+......+|++.. ++|.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~~-~~g~ 76 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALEI-DEGK 76 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE-CCCC
Confidence 445678889999988877777521 245555555443 34555556678999853 3354
No 260
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=87.54 E-value=2.1 Score=26.86 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=34.0
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEE
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE----SPSIATRYGIRSIPTVM 158 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~----~~~l~~~~~i~~~Pt~i 158 (186)
..|+.++|++|++..-.+++..- .+....++..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 35789999999988888877522 24455555432 24555555566899994
No 261
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=86.95 E-value=0.57 Score=32.47 Aligned_cols=33 Identities=3% Similarity=0.016 Sum_probs=25.6
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES 142 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~ 142 (186)
..|+.+||+.|++....|++- ++.+-.+|+.++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 468899999999988888774 466777776554
No 262
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=86.38 E-value=0.85 Score=34.34 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=26.8
Q ss_pred hHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q 029863 143 PSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 143 ~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l 182 (186)
.+.+.++||.++||+++ ||+ .+.|....+.+.+.|
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 45778899999999977 674 567887777776654
No 263
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=86.07 E-value=2.4 Score=34.10 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=37.6
Q ss_pred HhCCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcC-CCcccEEEEEe
Q 029863 96 LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYG-IRSIPTVMIFK 161 (186)
Q Consensus 96 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~-i~~~Pt~i~~~ 161 (186)
...||+.+++..+.|||+|-...=.|--...+|.. +......-|- +. -..+||++|..
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~~-------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSDP-------YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecCc-------ccCCCCCCeEEEec
Confidence 35799999999999999999888655555555644 5333222221 12 14678886653
No 264
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=85.88 E-value=0.18 Score=33.53 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=40.0
Q ss_pred CCCCcccccchHHHHHHHHHh-cCceEEEEEeCCCChHHHHHcCCCcccEEE
Q 029863 108 APWCGPCRMIHPIIDELSKQY-VGKLKCYKVNTDESPSIATRYGIRSIPTVM 158 (186)
Q Consensus 108 a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i 158 (186)
+..-+..+.....++.+.+.+ ++...+-.+|+.++|++++.++|-.+||++
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 334445566667777777764 446999999999999999999999999974
No 265
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=85.77 E-value=0.73 Score=31.96 Aligned_cols=57 Identities=19% Similarity=0.462 Sum_probs=38.9
Q ss_pred EECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC--cccEEEE-EeCCe
Q 029863 106 FWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIR--SIPTVMI-FKNGE 164 (186)
Q Consensus 106 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~--~~Pt~i~-~~~G~ 164 (186)
||+.+|+.|......+.+... .+.+.+..+..+...++.+.+++. ..-+.+. .++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 799999999999999888721 234666666445555666778875 3444434 57886
No 266
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=84.76 E-value=1.4 Score=39.25 Aligned_cols=83 Identities=13% Similarity=0.212 Sum_probs=60.4
Q ss_pred ccccccccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHH---HHHHHHhcCceEEEEEeCCCChHHHHH-----
Q 029863 77 QETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPII---DELSKQYVGKLKCYKVNTDESPSIATR----- 148 (186)
Q Consensus 77 ~~~~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~v~~d~~~~l~~~----- 148 (186)
.......-...++.|++ ...++||+++-..-+.|-.|..++.+- ++.++...+++.-++||-++.|++-+-
T Consensus 91 aynpvdwypwgqeaf~k-ar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv 169 (786)
T KOG2244|consen 91 AYNPVDWYPWGQEAFNK-ARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFV 169 (786)
T ss_pred ccCCcccCcchHHHHHH-HHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHH
Confidence 33445556667788877 466799999999999999999998643 557777777777788888888876663
Q ss_pred ---cCCCcccEEEEE
Q 029863 149 ---YGIRSIPTVMIF 160 (186)
Q Consensus 149 ---~~i~~~Pt~i~~ 160 (186)
+|--|.|--+++
T Consensus 170 ~assg~GGWPmsV~L 184 (786)
T KOG2244|consen 170 VASSGGGGWPMSVFL 184 (786)
T ss_pred HhccCCCCCceeEEe
Confidence 355577754444
No 267
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=84.58 E-value=1.5 Score=30.67 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=25.5
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES 142 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~ 142 (186)
+..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 3467889999999988888874 366667776544
No 268
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=83.19 E-value=2.1 Score=36.20 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=42.6
Q ss_pred CcccccchHHH----HHHHHHhcCc---eEEEEEeCC-CCh--HHHHHcCCCccc-EEEEEeCCeEEEEEeCCCCHHHHH
Q 029863 111 CGPCRMIHPII----DELSKQYVGK---LKCYKVNTD-ESP--SIATRYGIRSIP-TVMIFKNGEKKDTVIGAVPKSTLT 179 (186)
Q Consensus 111 C~~C~~~~p~l----~~l~~~~~~~---v~~~~v~~d-~~~--~l~~~~~i~~~P-t~i~~~~G~~~~~~~G~~~~~~l~ 179 (186)
||.|.+-.-.+ .++.+.+.+. +++...-|- ..+ .--..+||.+-+ ..++|++|+++..+.+..-.++|.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~ 350 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELE 350 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHH
Confidence 66666555433 4455555442 555555553 322 233467887665 588999999988766543344444
Q ss_pred HHHHh
Q 029863 180 TSIEK 184 (186)
Q Consensus 180 ~~l~~ 184 (186)
+.|++
T Consensus 351 ~~i~~ 355 (360)
T PRK00366 351 AEIEA 355 (360)
T ss_pred HHHHH
Confidence 44443
No 269
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=82.80 E-value=19 Score=27.55 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=47.6
Q ss_pred CCCcEEEEEE-CCCCcccccchHHHHHHHHHhcC-ceEEEEEeC----------------------------CCChHHHH
Q 029863 98 SGSPVLVEFW-APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNT----------------------------DESPSIAT 147 (186)
Q Consensus 98 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~----------------------------d~~~~l~~ 147 (186)
.||.|++.|| -.+--.|--.--.+-+.+.++.. +-.++.+.+ |.+.++++
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 4788999888 34444454444444444444433 234444433 34557999
Q ss_pred HcCC----Cccc---EEEEEeCCeEEEEEeCC----CCHHHHHHHHHh
Q 029863 148 RYGI----RSIP---TVMIFKNGEKKDTVIGA----VPKSTLTTSIEK 184 (186)
Q Consensus 148 ~~~i----~~~P---t~i~~~~G~~~~~~~G~----~~~~~l~~~l~~ 184 (186)
+||+ .|++ .+++.++|...+.-... .+-++...+++.
T Consensus 112 dyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqA 159 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQA 159 (196)
T ss_pred hcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHH
Confidence 9998 4666 35555677655432322 234555555543
No 270
>PRK12559 transcriptional regulator Spx; Provisional
Probab=82.39 E-value=1.5 Score=31.64 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=23.9
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE 141 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~ 141 (186)
+..|+.++|+.|+.....|++- ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeC
Confidence 4578899999999988777774 35555555543
No 271
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=79.93 E-value=7 Score=30.75 Aligned_cols=73 Identities=22% Similarity=0.370 Sum_probs=51.1
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l 182 (186)
+=.|..-.|..|.++...+++- -+-++|++. +....+.++-+-+|-++|.+ |.||+.+ +.+.+++++++..+
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nk--gll~~Vkii--~a~~p~f~~~~~~V~SvP~V--f~DGel~--~~dpVdp~~ies~~ 84 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENK--GLLGKVKII--DAELPPFLAFEKGVISVPSV--FIDGELV--YADPVDPEEIESIL 84 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhc--CCCCCceEE--EcCCChHHHhhcceeecceE--EEcCeEE--EcCCCCHHHHHHHH
Confidence 3356678899999988888761 111446654 45556667777788899987 4488764 66788999888876
Q ss_pred H
Q 029863 183 E 183 (186)
Q Consensus 183 ~ 183 (186)
+
T Consensus 85 ~ 85 (265)
T COG5494 85 S 85 (265)
T ss_pred c
Confidence 4
No 272
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=78.76 E-value=6.7 Score=28.63 Aligned_cols=66 Identities=14% Similarity=0.290 Sum_probs=49.6
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcc-c-EEEEEeCCeE
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSI-P-TVMIFKNGEK 165 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~-P-t~i~~~~G~~ 165 (186)
-.++-.|.+|+-.|+.|......+.+... .+.+.+..+.-+....+.+..|+.-- + ++++.++|+.
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~--~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~ 72 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQ--GGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQL 72 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhcc--CCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCce
Confidence 35677888999999999997777776532 34588998888888889898888543 4 4656677753
No 273
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=78.64 E-value=9.4 Score=23.48 Aligned_cols=56 Identities=14% Similarity=0.270 Sum_probs=34.5
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEeCCeE
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE----SPSIATRYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~----~~~l~~~~~i~~~Pt~i~~~~G~~ 165 (186)
..|+.++|+.|++..-.+++..- ......++... .+++.+......+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI----PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRV 61 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 35778999999988888777522 24444555422 234444444567899853 4543
No 274
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=78.14 E-value=2.8 Score=31.49 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=20.8
Q ss_pred hHHHHHcCCCcccEEEEEeCCeEEEEEeC
Q 029863 143 PSIATRYGIRSIPTVMIFKNGEKKDTVIG 171 (186)
Q Consensus 143 ~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G 171 (186)
.+.+.++||.++||+++.+++.......|
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~~~~~~~~ 187 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNGEGILLTG 187 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCeEEEecCC
Confidence 45778899999999988877653333334
No 275
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=77.85 E-value=8.9 Score=30.58 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=36.0
Q ss_pred HhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC----ceEEEEEeCC
Q 029863 96 LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG----KLKCYKVNTD 140 (186)
Q Consensus 96 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~----~v~~~~v~~d 140 (186)
...|+++||-+-..+|.+|..-...|+.|..++.. +|.|+.||--
T Consensus 23 ~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 23 NSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred hcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 34589999999999999999988888887766532 4889888753
No 276
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=77.62 E-value=13 Score=23.56 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=35.2
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEeCCeE
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE----SPSIATRYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~----~~~l~~~~~i~~~Pt~i~~~~G~~ 165 (186)
..|+.+.|+.|++.+-.+++.. -.+.+..++... .+++.+--....+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~g----l~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKG----LRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcC----CCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 4577888999988887776652 235556666532 23455444556789984 46653
No 277
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=77.05 E-value=22 Score=25.44 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=31.1
Q ss_pred ceEEEEEeCCCChH----------HHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 029863 131 KLKCYKVNTDESPS----------IATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 131 ~v~~~~v~~d~~~~----------l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~ 183 (186)
.+.+...|...++. +.++-|...+|-+++ ||+++. ...+.+.++|.+|+.
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~-~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVK-TGRYPTNEELAEWLG 99 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEE-ESS---HHHHHHHHT
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEE-ecCCCCHHHHHHHhC
Confidence 49999999987763 445568899998756 888763 333567888888864
No 278
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=76.13 E-value=3.2 Score=29.98 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=24.4
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES 142 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~ 142 (186)
+..|+.++|+.|+.....|++- ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCCC
Confidence 4467889999999988777663 366666666543
No 279
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=74.56 E-value=7 Score=30.52 Aligned_cols=34 Identities=29% Similarity=0.661 Sum_probs=26.4
Q ss_pred CChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCH
Q 029863 141 ESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPK 175 (186)
Q Consensus 141 ~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~ 175 (186)
-+|.+.++|+|+.+|++++... ....++.|-++-
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~-~~yD~I~GNIsl 183 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCS-QGYDIIRGNLRV 183 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcC-CCCCEEEecccH
Confidence 4789999999999999988754 334578887663
No 280
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.63 E-value=20 Score=24.80 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=36.8
Q ss_pred CCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCC-CcccEE-EEEeCCeE
Q 029863 108 APWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGI-RSIPTV-MIFKNGEK 165 (186)
Q Consensus 108 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i-~~~Pt~-i~~~~G~~ 165 (186)
.|-|++..+....|... +.+.+..+|+-.++++.+.+.- ...||+ -+|-||+-
T Consensus 27 ~P~CGFS~~~vqiL~~~-----g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEf 81 (105)
T COG0278 27 FPQCGFSAQAVQILSAC-----GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEF 81 (105)
T ss_pred CCCCCccHHHHHHHHHc-----CCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEE
Confidence 46799888887777765 2378999999888888775433 244664 44568853
No 281
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=72.01 E-value=23 Score=27.58 Aligned_cols=76 Identities=24% Similarity=0.475 Sum_probs=45.8
Q ss_pred EEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC------------------hHHHHHcCCCc--ccEEEEEe
Q 029863 102 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES------------------PSIATRYGIRS--IPTVMIFK 161 (186)
Q Consensus 102 vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~------------------~~l~~~~~i~~--~Pt~i~~~ 161 (186)
||=+|++..|..|---...|.+|.++ + +|..+...+|-. ...++.++.++ +|.+++
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~-~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV-- 76 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR-P-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV-- 76 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH-T-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC-C-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--
Confidence 34578899999999999999999988 3 566666655411 23555666665 577755
Q ss_pred CCeEEEEEeCCCCHHHHHHHHHh
Q 029863 162 NGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 162 ~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
||.. ...| ...+.+...|++
T Consensus 77 nG~~--~~~g-~~~~~~~~ai~~ 96 (202)
T PF06764_consen 77 NGRE--HRVG-SDRAAVEAAIQA 96 (202)
T ss_dssp TTTE--EEET-T-HHHHHHHHHH
T ss_pred CCee--eeec-cCHHHHHHHHHH
Confidence 7863 3445 356666666654
No 282
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=70.55 E-value=16 Score=27.17 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=47.0
Q ss_pred CCC-cEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCC-----------------------CChHHHHHcCC--
Q 029863 98 SGS-PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD-----------------------ESPSIATRYGI-- 151 (186)
Q Consensus 98 ~~k-~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d-----------------------~~~~l~~~~~i-- 151 (186)
.|| .++..|=+-.-+.|-.....+.+.+.++.+ +.++.|+.| .+.++.++||+
T Consensus 43 ~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~-~~Vl~IS~DLPFAq~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I 121 (158)
T COG2077 43 AGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN-TVVLCISMDLPFAQKRFCGAEGIENVITLSDFRDRAFGENYGVLI 121 (158)
T ss_pred CCceEEEEEccCCCCchhhHHHHHHHHHHhccCC-cEEEEEeCCChhHHhhhhhhcCcccceEhhhhhhhhhhHhhCEEe
Confidence 355 455566688899999999999998988876 666666554 23457788886
Q ss_pred Cccc-------EEEEEe-CCeEEE
Q 029863 152 RSIP-------TVMIFK-NGEKKD 167 (186)
Q Consensus 152 ~~~P-------t~i~~~-~G~~~~ 167 (186)
...| ++++.+ +|++++
T Consensus 122 ~egpL~gLlARaV~V~De~g~V~y 145 (158)
T COG2077 122 NEGPLAGLLARAVFVLDENGKVTY 145 (158)
T ss_pred ccccccCeeeeEEEEEcCCCcEEE
Confidence 2333 344444 777654
No 283
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=68.38 E-value=33 Score=23.05 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=39.6
Q ss_pred CCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHH-cCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 029863 108 APWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATR-YGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 108 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~-~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
..+|++|++..=.+.+.. =...+..+|.++.++...+ --...+|+++ .+|..+ .+...+.+.|++
T Consensus 19 ~g~cpf~~rvrl~L~eKg----i~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i------~eS~~I~eYLde 84 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKG----VVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK------TDNNKIEEFLEE 84 (91)
T ss_pred CCCChhHHHHHHHHHHCC----CceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe------cCHHHHHHHHHH
Confidence 357999999888877751 1255566666655544444 3446789663 355433 346667777765
No 284
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=67.66 E-value=6 Score=33.29 Aligned_cols=51 Identities=22% Similarity=0.447 Sum_probs=41.0
Q ss_pred EEeCCCChHHHHHcCCCcccEEEEEe--CCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 136 KVNTDESPSIATRYGIRSIPTVMIFK--NGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 136 ~v~~d~~~~l~~~~~i~~~Pt~i~~~--~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
..|..+...+-.-|.+..+|.+.+++ -|+.+.+..|..+++.+..-+++++
T Consensus 137 ~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi 189 (356)
T KOG1364|consen 137 LDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFI 189 (356)
T ss_pred eeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHH
Confidence 55666777888999999999888884 8899999999888887776666653
No 285
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=66.06 E-value=12 Score=24.46 Aligned_cols=33 Identities=9% Similarity=0.273 Sum_probs=20.9
Q ss_pred cccEEEEEe-CCeEEEEEe-CCCCHHHHHHHHHhh
Q 029863 153 SIPTVMIFK-NGEKKDTVI-GAVPKSTLTTSIEKF 185 (186)
Q Consensus 153 ~~Pt~i~~~-~G~~~~~~~-G~~~~~~l~~~l~~~ 185 (186)
.-|++++++ +|++++++. ...+.++++++|++.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 458888875 888777554 357899999999864
No 286
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=65.86 E-value=15 Score=29.37 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=51.2
Q ss_pred CcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeC------------------CCChHHHHHcCCCcccEEEEEe
Q 029863 100 SPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNT------------------DESPSIATRYGIRSIPTVMIFK 161 (186)
Q Consensus 100 k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~------------------d~~~~l~~~~~i~~~Pt~i~~~ 161 (186)
+-||=.|++..|..|---...+.+++++ +++.-+...+ +.....++.|+-++++|=-.+-
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~--~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD--PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC--CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 4456678899999999999999998765 3343333322 2334567778888887755555
Q ss_pred CCeEEEEEeCCCCHHHHHHHHH
Q 029863 162 NGEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 162 ~G~~~~~~~G~~~~~~l~~~l~ 183 (186)
||... ..|. +..++++.|+
T Consensus 120 nGr~~--~~Ga-d~~~i~~~i~ 138 (261)
T COG5429 120 NGRVH--ANGA-DPGAIEDAIA 138 (261)
T ss_pred echhh--hcCC-CHHHHHHHHH
Confidence 78643 3343 4555666654
No 287
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=65.28 E-value=5.2 Score=30.90 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=24.3
Q ss_pred HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q 029863 144 SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 144 ~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l 182 (186)
+.+.+.||.|+|++++-+++..-+.+-|.---+.+++.|
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 456778999999997754322223566765555555443
No 288
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=64.71 E-value=5.7 Score=33.65 Aligned_cols=75 Identities=24% Similarity=0.239 Sum_probs=44.0
Q ss_pred CcccccchHHHHHHHHHhc-------CceEEEEEeCCCC-hHHHH--HcCCC-ccc-EEEEEeCCeEEEEE-eCCCCHHH
Q 029863 111 CGPCRMIHPIIDELSKQYV-------GKLKCYKVNTDES-PSIAT--RYGIR-SIP-TVMIFKNGEKKDTV-IGAVPKST 177 (186)
Q Consensus 111 C~~C~~~~p~l~~l~~~~~-------~~v~~~~v~~d~~-~~l~~--~~~i~-~~P-t~i~~~~G~~~~~~-~G~~~~~~ 177 (186)
||.|=+..=.++++.++.. ..+++..+-|--| |.-++ .||+- +-| -.++|++|+.+.+. ....-.++
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 7777776655555554432 2367777766544 33232 46776 445 48899999999988 66666778
Q ss_pred HHHHHHhh
Q 029863 178 LTTSIEKF 185 (186)
Q Consensus 178 l~~~l~~~ 185 (186)
|.+.|++.
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88888764
No 289
>COG3411 Ferredoxin [Energy production and conversion]
Probab=63.49 E-value=15 Score=23.09 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=24.1
Q ss_pred ccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 154 IPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 154 ~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
=|+++++.+| .+.+.++++...++++++|
T Consensus 17 gPvl~vYpeg----vWY~~V~p~~a~rIv~~hl 45 (64)
T COG3411 17 GPVLVVYPEG----VWYTRVDPEDARRIVQSHL 45 (64)
T ss_pred CCEEEEecCC----eeEeccCHHHHHHHHHHHH
Confidence 4999999999 4677789999999888764
No 290
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=62.67 E-value=33 Score=28.97 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=45.4
Q ss_pred CcccccchHHHHHHH----HHhcCc---eEEEEEeCCC-ChHHH--HHcCCCc--ccEEEEEeCCeEEEEEeCCCCHHHH
Q 029863 111 CGPCRMIHPIIDELS----KQYVGK---LKCYKVNTDE-SPSIA--TRYGIRS--IPTVMIFKNGEKKDTVIGAVPKSTL 178 (186)
Q Consensus 111 C~~C~~~~p~l~~l~----~~~~~~---v~~~~v~~d~-~~~l~--~~~~i~~--~Pt~i~~~~G~~~~~~~G~~~~~~l 178 (186)
||.|-+..-.+.+.. +.+... +++..+-|-- .|.-+ ..+||.+ -|...+|++|+.+.++.+..-.++|
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 999988775554433 333321 3333332211 12112 2456643 5788899999999988887767777
Q ss_pred HHHHHhh
Q 029863 179 TTSIEKF 185 (186)
Q Consensus 179 ~~~l~~~ 185 (186)
...++++
T Consensus 344 ~~~i~~~ 350 (361)
T COG0821 344 EALIEAY 350 (361)
T ss_pred HHHHHHH
Confidence 7777654
No 291
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=61.98 E-value=35 Score=21.11 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=40.3
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCC----CChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD----ESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 178 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d----~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l 178 (186)
+..|+.+.|++|++..-.+.+..- .+....++.. ..+++.+......+|++. .+|..+ .....+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~l------~es~aI 69 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV----DYELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLKL------FESRAI 69 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC----CcEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEEE------EcHHHH
Confidence 345567779999999888877532 2344444442 134555555667899874 355432 234455
Q ss_pred HHHHH
Q 029863 179 TTSIE 183 (186)
Q Consensus 179 ~~~l~ 183 (186)
.++|.
T Consensus 70 ~~yL~ 74 (76)
T cd03053 70 TRYLA 74 (76)
T ss_pred HHHHh
Confidence 55554
No 292
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=61.36 E-value=25 Score=26.90 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=38.0
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC-hHHHHHcCCCcccEEEEEeCCe
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES-PSIATRYGIRSIPTVMIFKNGE 164 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~-~~l~~~~~i~~~Pt~i~~~~G~ 164 (186)
++...+-.|+.++|++|+...-.+++.. -.+....+|.+.. +++.+.--...+|++. .+|.
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~g----l~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~ 67 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEKG----VSVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DREL 67 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHCC----CCCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCE
Confidence 3445566677788999999998777752 1255556665443 3444433345789985 3554
No 293
>PRK10387 glutaredoxin 2; Provisional
Probab=60.92 E-value=49 Score=24.98 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=31.1
Q ss_pred EEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeE
Q 029863 105 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 105 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~ 165 (186)
.++.+.|++|++..-.+++..- ..+...++..+.....+-.+...+|+++. ++|..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi----~y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNI----PVELIVLANDDEATPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCC----CeEEEEcCCCchhhHHHhcCCcccceEEe-cCCeE
Confidence 3467779999998887777521 23333344333322222233457898843 45643
No 294
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=60.48 E-value=34 Score=21.05 Aligned_cols=58 Identities=17% Similarity=0.219 Sum_probs=33.4
Q ss_pred EEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC-ChHHHHHcCCCcccEEEEEeCCeE
Q 029863 105 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE-SPSIATRYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 105 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~-~~~l~~~~~i~~~Pt~i~~~~G~~ 165 (186)
.|+.+.|++|++..-.+.+... +-.+....+|..+ .+++.+......+|.+. ..+|..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~--~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~-~~~g~~ 61 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGL--GDDVELVLVNPWSDDESLLAVNPLGKIPALV-LDDGEA 61 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCC--CCCcEEEEcCcccCChHHHHhCCCCCCCEEE-ECCCCE
Confidence 4678889999988777766210 1124444444322 34555555566789874 345643
No 295
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=57.39 E-value=31 Score=28.85 Aligned_cols=94 Identities=12% Similarity=0.184 Sum_probs=54.2
Q ss_pred cccccChhHHHHHHHhCCCcEEEEEECCCCcccccchHHHHHHHHHhcC---ceEEEEEeCCCChHHHHHcCC--CcccE
Q 029863 82 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG---KLKCYKVNTDESPSIATRYGI--RSIPT 156 (186)
Q Consensus 82 ~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~v~~d~~~~l~~~~~i--~~~Pt 156 (186)
-|.++|-++..+ ..+.|.|.+++|..+..-...++.. ..+++++.+ .+.++..|.+.-..-...+|- .-+|.
T Consensus 211 LVREiTFeN~EE-LtEEGlPflILf~~kdD~~s~k~F~--~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DLPv 287 (375)
T KOG0912|consen 211 LVREITFENAEE-LTEEGLPFLILFRKKDDKESEKIFK--NAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDLPV 287 (375)
T ss_pred hhhhhhhccHHH-HhhcCCceEEEEecCCcccHHHHHH--HHHHHHhhhhhhccceeecCcceecchHHHhCCCcccCcE
Confidence 345566666655 3567999999999987655443332 223333333 288888888766555566553 23454
Q ss_pred --------EEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 029863 157 --------VMIFKNGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 157 --------~i~~~~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
..+|.+++.+. . +..|.+|+..
T Consensus 288 iaIDsF~Hmylfp~f~di~-~-----pGkLkqFv~D 317 (375)
T KOG0912|consen 288 IAIDSFRHMYLFPDFNDIN-I-----PGKLKQFVAD 317 (375)
T ss_pred EEeeccceeeecCchhhhc-C-----ccHHHHHHHH
Confidence 44445554332 2 3356666654
No 296
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=56.32 E-value=13 Score=27.67 Aligned_cols=33 Identities=6% Similarity=0.046 Sum_probs=26.3
Q ss_pred EEECCCCcccccchHHHHHHHHHhcCceEEEEE
Q 029863 105 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKV 137 (186)
Q Consensus 105 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 137 (186)
.|++.-||+|.-..+.++++.++++-.+....+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 578899999999999999999888644554333
No 297
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=56.07 E-value=46 Score=20.49 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 029863 109 PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 109 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
+||++|++..-.++.. ++.+-.++++... .-.-..+|++.. +|+.+ .....+.++|++
T Consensus 14 s~sp~~~~v~~~L~~~------~i~~~~~~~~~~~----~~p~g~vP~l~~--~g~~l------~es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMA------GIPYEVVFSSNPW----RSPTGKLPFLEL--NGEKI------ADSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhC------CCceEEEecCCcc----cCCCcccCEEEE--CCEEE------cCHHHHHHHHhh
Confidence 5899999998888774 2444444444321 112346898743 45422 234556666653
No 298
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=56.03 E-value=21 Score=24.55 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=37.4
Q ss_pred EECCCCcccccch-------HHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q 029863 106 FWAPWCGPCRMIH-------PIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 178 (186)
Q Consensus 106 F~a~wC~~C~~~~-------p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l 178 (186)
|....|+.|..+. ...+.....|.+ ++.+--.+...+|+.+++.. +..|...-.+.|..+.+ +
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G---~i~i~dP~~SwVAk~l~i~~------~~pG~YAi~V~g~lp~~-i 87 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEG---IIALMDPEKSWVARWQRIDK------FVPGIYAISVSGRLPED-I 87 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcce---EEEEECCchhHHHHHhCCCC------CCCCeEEEEecCcCCHH-H
Confidence 7788999996322 112223333333 22222344568999999963 23454444577776665 4
Q ss_pred HHHHH
Q 029863 179 TTSIE 183 (186)
Q Consensus 179 ~~~l~ 183 (186)
.+.++
T Consensus 88 ~~~l~ 92 (98)
T cd07973 88 VEELE 92 (98)
T ss_pred HHHHH
Confidence 43343
No 299
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=55.54 E-value=86 Score=23.53 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=22.6
Q ss_pred EEEEeCCeEEEEEeCCCCHHHHHHHHH
Q 029863 157 VMIFKNGEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 157 ~i~~~~G~~~~~~~G~~~~~~l~~~l~ 183 (186)
+++.++|++.....|.++++++.+.|+
T Consensus 129 iVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 129 IVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred EEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 344479999999999999999988875
No 300
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=55.30 E-value=5.9 Score=24.16 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=30.1
Q ss_pred cccCceeeccccCCcccc-CCCcceeeccCceeeecccc
Q 029863 41 EFKGLKVRPVRSFGSVSQ-GSSSSFRLRRGAQIVCEAQE 78 (186)
Q Consensus 41 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (186)
.+..++.+|+.+++++.. ++...|....|..++.+..-
T Consensus 13 ~v~~v~~spi~GlyeV~~~~~~i~Y~~~dg~yli~G~l~ 51 (57)
T PF10411_consen 13 KVESVSPSPIPGLYEVVLKGGGILYVDEDGRYLIQGQLY 51 (57)
T ss_dssp TCEEEEE-SSTTEEEEEE-TTEEEEEETTSSEEEES-EE
T ss_pred ceeEEEcCCCCCeEEEEECCCeEEEEcCCCCEEEEeEEE
Confidence 455778889999999999 89999999999988876543
No 301
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=55.23 E-value=27 Score=29.46 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=36.0
Q ss_pred CcccccchHHH----HHHHHHhcC---ceEEEEEeCCCC-hHHHH--HcCCCcc-c-EEEEEeCCeEEEEEeCCCCHHHH
Q 029863 111 CGPCRMIHPII----DELSKQYVG---KLKCYKVNTDES-PSIAT--RYGIRSI-P-TVMIFKNGEKKDTVIGAVPKSTL 178 (186)
Q Consensus 111 C~~C~~~~p~l----~~l~~~~~~---~v~~~~v~~d~~-~~l~~--~~~i~~~-P-t~i~~~~G~~~~~~~G~~~~~~l 178 (186)
||.|-+..-.+ +++.+.+.+ .+++..+-|--| |.-++ .+||-+- + ..++|++|+++.. ++.+++
T Consensus 262 CPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~k----v~~~~~ 337 (346)
T TIGR00612 262 CPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAK----QPETDM 337 (346)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEe----cCHHHH
Confidence 55555444333 444443432 255555544322 22233 4677654 3 5789999988765 445555
Q ss_pred HHHHH
Q 029863 179 TTSIE 183 (186)
Q Consensus 179 ~~~l~ 183 (186)
.+.+.
T Consensus 338 ~~~l~ 342 (346)
T TIGR00612 338 ADELI 342 (346)
T ss_pred HHHHH
Confidence 54443
No 302
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=55.12 E-value=16 Score=24.06 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=23.6
Q ss_pred ccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 154 IPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 154 ~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
-.++.+|..|+.+ +.|..+.+++.+.++++
T Consensus 49 ~~t~~IF~sGki~--itGaks~~~~~~a~~~i 78 (86)
T PF00352_consen 49 KATVLIFSSGKIV--ITGAKSEEEAKKAIEKI 78 (86)
T ss_dssp TEEEEEETTSEEE--EEEESSHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEE--EEecCCHHHHHHHHHHH
Confidence 3578999999875 78888888888777654
No 303
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=54.04 E-value=43 Score=21.37 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=36.9
Q ss_pred CCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcC---CCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 029863 108 APWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYG---IRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 108 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~---i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
-+||++|++..-.+.+..- ......++..+.......++ ...+|++. ..+|..+ .+...+.+.|++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i----~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~-~~~~~~l------~eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGL----EYKTVPVEFPDIPPILGELTSGGFYTVPVIV-DGSGEVI------GDSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCC----CCeEEEecCCCcccccccccCCCCceeCeEE-ECCCCEE------eCHHHHHHHHHH
Confidence 3689999998888877522 23444555443333222222 35789873 3335432 245566666654
No 304
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=52.71 E-value=76 Score=24.26 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=29.0
Q ss_pred EECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCe
Q 029863 106 FWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 164 (186)
Q Consensus 106 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~ 164 (186)
++...||+|++..-.+.+..-. .+...++.++.....+.-....+|++.. .+|.
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~----~e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~ 56 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIP----VEKHVLLNDDEETPIRMIGAKQVPILQK-DDGR 56 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCC----eEEEECCCCcchhHHHhcCCCCcceEEe-eCCe
Confidence 4566799999887777765211 2222233333323333333467898743 4664
No 305
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=52.32 E-value=27 Score=23.65 Aligned_cols=63 Identities=21% Similarity=0.489 Sum_probs=39.5
Q ss_pred CCCcccccchHHHHHHHHHhcC----ceEEEEEeCCCChHHHHHcCC-CcccEEEEEe--CCeEEEEEeCCCCHHHHHHH
Q 029863 109 PWCGPCRMIHPIIDELSKQYVG----KLKCYKVNTDESPSIATRYGI-RSIPTVMIFK--NGEKKDTVIGAVPKSTLTTS 181 (186)
Q Consensus 109 ~wC~~C~~~~p~l~~l~~~~~~----~v~~~~v~~d~~~~l~~~~~i-~~~Pt~i~~~--~G~~~~~~~G~~~~~~l~~~ 181 (186)
.-|..+- .+.++.+.+++.+ .+.+...+ .+|- +.=|++++|. +| ...|.++++++...
T Consensus 14 ~~C~~~g--~~l~~~l~~~l~~~~~~~v~v~~~~---------clG~c~~gp~vvvyP~~~g----~wy~~v~p~~v~~I 78 (97)
T cd03062 14 KRCGICG--PPLAAELRAELPEHGPGGVRVWEVS---------HVGGHKFAGNVIIYPKGDG----IWYGRVTPEHVPPI 78 (97)
T ss_pred cChhhcC--HHHHHHHHHHHHHhCCCceEEEeCC---------cCCccCcCCEEEEEeCCCe----eEEeecCHHHHHHH
Confidence 3455542 3456666666543 24444433 2333 3459999999 77 57777899999998
Q ss_pred HHhhC
Q 029863 182 IEKFL 186 (186)
Q Consensus 182 l~~~l 186 (186)
+++++
T Consensus 79 v~~hl 83 (97)
T cd03062 79 VDRLI 83 (97)
T ss_pred HHHHh
Confidence 87753
No 306
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=51.60 E-value=16 Score=25.59 Aligned_cols=32 Identities=6% Similarity=0.084 Sum_probs=22.3
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCC
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD 140 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d 140 (186)
+..|..+.|..|++....|++- ++.+-.+|+-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehh
Confidence 3467899999999887777663 3555555543
No 307
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=50.98 E-value=33 Score=27.15 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=36.8
Q ss_pred CcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEE
Q 029863 111 CGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 167 (186)
Q Consensus 111 C~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~ 167 (186)
--+|..++..++++++++..-+.++.-|+ ++|..|.= .++.+|||+++.
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDI----NfAS~YsD----~IVAlK~G~vv~ 216 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDI----NFASCYSD----HIVALKNGKVVK 216 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecc----cHHHhhhh----heeeecCCEEEe
Confidence 45788999999999999977566666666 55665532 577889998775
No 308
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=49.22 E-value=61 Score=19.96 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=38.7
Q ss_pred EEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCC--CcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q 029863 105 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGI--RSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 105 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i--~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l 182 (186)
.++.+.|++|++..-.+.+..- ......++.........+++- ..+|++.. +|..+ .+...+.+.|
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl----~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~l------~eS~aI~~yL 70 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGV----PYEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKPI------CESLIIVEYI 70 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCC----CCEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEEe------ehHHHHHHHH
Confidence 4567889999999888877532 234444544332222334443 58998852 45322 2345566666
Q ss_pred Hh
Q 029863 183 EK 184 (186)
Q Consensus 183 ~~ 184 (186)
++
T Consensus 71 ~~ 72 (74)
T cd03058 71 DE 72 (74)
T ss_pred Hh
Confidence 54
No 309
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=47.10 E-value=1.2e+02 Score=23.81 Aligned_cols=77 Identities=13% Similarity=0.251 Sum_probs=44.8
Q ss_pred HHHHhCCCcEEEEEE-----CCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC---------------------ChHH
Q 029863 93 SLVLDSGSPVLVEFW-----APWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE---------------------SPSI 145 (186)
Q Consensus 93 ~~~~~~~k~vvv~F~-----a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~---------------------~~~l 145 (186)
++.....+.+|..|. ..-|+.|-.+...++-....+.. ++.++.|.-.- ..++
T Consensus 62 dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~gs~F 141 (211)
T PF05988_consen 62 DLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYGSDF 141 (211)
T ss_pred HHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCCCcc
Confidence 333334455555565 56699999999998444444444 37887774321 1234
Q ss_pred HHHcCC-----CcccEEE-EEeCCeEEEEE
Q 029863 146 ATRYGI-----RSIPTVM-IFKNGEKKDTV 169 (186)
Q Consensus 146 ~~~~~i-----~~~Pt~i-~~~~G~~~~~~ 169 (186)
...|++ ...|.+- |+++|..|...
T Consensus 142 n~D~~~~~~~~~~~~g~svF~Rdg~~VfhT 171 (211)
T PF05988_consen 142 NYDFGVSFDEGGEMPGLSVFLRDGGRVFHT 171 (211)
T ss_pred cccccceeccCCCceeEEEEEEcCCEEEEE
Confidence 455666 4677754 44666555533
No 310
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=46.37 E-value=72 Score=21.39 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=31.2
Q ss_pred ECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHc--------CCCcccEEEEEeCCe
Q 029863 107 WAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRY--------GIRSIPTVMIFKNGE 164 (186)
Q Consensus 107 ~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~~~~l~~~~--------~i~~~Pt~i~~~~G~ 164 (186)
|-+.+.-.+++...=+++...+.. ++.+-.+|++.+++..+.+ |-..+|-+++ +|+
T Consensus 5 Y~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~ 69 (92)
T cd03030 5 YIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDE 69 (92)
T ss_pred EEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCE
Confidence 333344455555544444444433 4889999998776654442 2356677643 553
No 311
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=45.83 E-value=29 Score=24.39 Aligned_cols=49 Identities=16% Similarity=0.424 Sum_probs=34.5
Q ss_pred CcccccchHHHHHHHHHhcCceEEEEEeCCCCh-HHHHHcCC--CcccEEEEE
Q 029863 111 CGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-SIATRYGI--RSIPTVMIF 160 (186)
Q Consensus 111 C~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~-~l~~~~~i--~~~Pt~i~~ 160 (186)
|++|..++..|.-.- ...+.+.+..|+...-. .+....|= .+.|.+++-
T Consensus 24 Cp~c~~iEGlLa~~P-~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~ 75 (112)
T PF11287_consen 24 CPHCAAIEGLLASFP-DLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLA 75 (112)
T ss_pred CCchHHHHhHHhhCh-hhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeC
Confidence 999999998886532 23456999999987754 44444443 688998554
No 312
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=44.26 E-value=30 Score=25.99 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=22.8
Q ss_pred EEECCCCcccccchHHHHHHHHHhc
Q 029863 105 EFWAPWCGPCRMIHPIIDELSKQYV 129 (186)
Q Consensus 105 ~F~a~wC~~C~~~~p~l~~l~~~~~ 129 (186)
.|++.-||+|.-..+.+.++.++++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 5788899999999999999999985
No 313
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=43.67 E-value=49 Score=23.35 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=19.5
Q ss_pred HHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHH
Q 029863 145 IATRYGIRSIPTVMIFKNGEKKDTVIGAVPKST 177 (186)
Q Consensus 145 l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~ 177 (186)
-+-.|||+.+|.++|. ++ ..+.|..+-..
T Consensus 75 ~Aw~lgi~k~PAVVfD--~~--~VVYG~tDV~~ 103 (114)
T PF07511_consen 75 DAWSLGITKYPAVVFD--DR--YVVYGETDVAR 103 (114)
T ss_pred HHHHhCccccCEEEEc--CC--eEEecccHHHH
Confidence 4667999999999664 33 24667655443
No 314
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=41.12 E-value=87 Score=19.40 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=33.7
Q ss_pred EEECCCCcccccchHHHHHHHHHhcCceEEEEEeCC---CChHHHHHcCCCcccEEEEEeCCeE
Q 029863 105 EFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD---ESPSIATRYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 105 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d---~~~~l~~~~~i~~~Pt~i~~~~G~~ 165 (186)
.|+.+.|+.|++..-.+++.. -.++...+|.. ..+++.+.--...+|++.. ++|..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~g----i~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~-~~g~~ 61 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNG----LDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG-ADGFC 61 (75)
T ss_pred EecCCCCccHHHHHHHHHHcC----CceEEEecccccccCCHHHHHhCCCCCCCEEEc-CCCCE
Confidence 456677899998877777642 12455555553 2344544444567899843 35643
No 315
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=40.08 E-value=1.3e+02 Score=24.61 Aligned_cols=90 Identities=16% Similarity=0.255 Sum_probs=54.4
Q ss_pred HHHHHHhCCCcEEEEEECCCC-cccccchHHHHHHHHHhcC-ceEEEEEeCCCChHHHHHc---CCCcccE---EEEEe-
Q 029863 91 WQSLVLDSGSPVLVEFWAPWC-GPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRY---GIRSIPT---VMIFK- 161 (186)
Q Consensus 91 ~~~~~~~~~k~vvv~F~a~wC-~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~~~~l~~~~---~i~~~Pt---~i~~~- 161 (186)
++..+...|..+|+.|-+-.- |-= ..+..+-+.+.- ...++.+......+..+-| -+..+|+ +++|+
T Consensus 64 lq~~~~~~~~~vvivfEGrDAAGKg----G~Ikri~~~lNPR~~rvval~aPt~~E~~qwY~qRy~~~lPa~GeiviFdR 139 (270)
T COG2326 64 LQRWVAETGQRVVIVFEGRDAAGKG----GAIKRITEALNPRGARVVALPAPTDRERGQWYFQRYVAHLPAAGEIVIFDR 139 (270)
T ss_pred HHHHHHhcCCeEEEEEecccccCCC----chhHHHhhhcCCceeEEeecCCCChHhhccHHHHHHHHhCCCCCeEEEech
Confidence 344466678888888875441 111 233343333322 3555555444444444433 3568896 77885
Q ss_pred ---CCeEEEEEeCCCCHHHHHHHHHh
Q 029863 162 ---NGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 162 ---~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
|---+.++.|..++++.++++++
T Consensus 140 SwYnr~gVeRVmGfct~~q~~rfl~e 165 (270)
T COG2326 140 SWYNRAGVERVMGFCTPKQYKRFLRE 165 (270)
T ss_pred hhccccCeeeccccCCHHHHHHHHHH
Confidence 44557899999999988888765
No 316
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=39.74 E-value=94 Score=22.58 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=44.7
Q ss_pred ChhHHHHHHHhCCCcEEEEEECCCCcccccc-hHHHHHHHH--HhcCceEEEEEeCCCCh---HHHHHcCC---CcccEE
Q 029863 87 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMI-HPIIDELSK--QYVGKLKCYKVNTDESP---SIATRYGI---RSIPTV 157 (186)
Q Consensus 87 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~-~p~l~~l~~--~~~~~v~~~~v~~d~~~---~l~~~~~i---~~~Pt~ 157 (186)
|.++.++.....+...|| +-.+-||=---. .|....... +-++ +++.|=...+. +-++.|=. .+-|.+
T Consensus 23 T~e~Vd~~~~~~~GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkPD--~lvTVFAGqDkEAt~~aR~yf~~~pPSSPS~ 99 (136)
T PF06491_consen 23 TAEEVDEALKNKEGTTLV-VVNSVCGCAAGNARPAAAMALQNDKKPD--HLVTVFAGQDKEATAKAREYFEPYPPSSPSI 99 (136)
T ss_dssp SHHHHHHHHHH--SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS--S--EEEEEETTTSHHHHHHHHHTSTTS---SSEE
T ss_pred CHHHHHHHHhCCCCcEEE-EEeccccccccccCHHHHHHHhCCCCCC--ceEEeccCCCHHHHHHHHHhcCCCCCCCchh
Confidence 567777766534444444 345667533222 344433222 2233 34444333332 34445433 245789
Q ss_pred EEEeCCeEEEEEeC----CCCHHHHHHHHH
Q 029863 158 MIFKNGEKKDTVIG----AVPKSTLTTSIE 183 (186)
Q Consensus 158 i~~~~G~~~~~~~G----~~~~~~l~~~l~ 183 (186)
.+||||+.++-+.- -.+.+.+.+-|+
T Consensus 100 ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~ 129 (136)
T PF06491_consen 100 ALFKDGELVHFIERHHIEGRPAEEIAENLQ 129 (136)
T ss_dssp EEEETTEEEEEE-GGGTTTS-HHHHHHHHH
T ss_pred eeeeCCEEEEEeehhhcCCCCHHHHHHHHH
Confidence 99999999885543 235555554443
No 317
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=39.13 E-value=30 Score=24.09 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=23.8
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES 142 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~ 142 (186)
..|+.+.|..|++....+++. ++.+-.+|+-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccCC
Confidence 467899999999988888773 355556665433
No 318
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=38.29 E-value=44 Score=26.08 Aligned_cols=40 Identities=23% Similarity=0.554 Sum_probs=27.2
Q ss_pred HHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEE
Q 029863 121 IDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKK 166 (186)
Q Consensus 121 l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~ 166 (186)
+.++.+++.. .+| .|....+.++|||+.+|+++ ..+|+..
T Consensus 158 ~~~l~~~l~~--~vY---fdQ~g~Lt~rF~I~~VPavV-~q~g~~l 197 (202)
T TIGR02743 158 VNELEKRLDS--RIY---FDQHGKLTQKFGIKHVPARV-SQEGLRL 197 (202)
T ss_pred HHHHHHHhCC--ceE---EcCCchHhhccCceeeceEE-EecCCEE
Confidence 5566666643 222 24456899999999999994 5777654
No 319
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=36.85 E-value=42 Score=24.67 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC
Q 029863 118 HPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 163 (186)
Q Consensus 118 ~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G 163 (186)
...++++.+.-++ +.+.-++. .++++++++++||.+ |...|
T Consensus 100 ~~~L~~Lr~lapg-l~l~P~sg---ddLA~rL~l~HYPvL-It~~g 140 (142)
T PF11072_consen 100 EAALQRLRQLAPG-LPLLPVSG---DDLARRLGLSHYPVL-ITATG 140 (142)
T ss_pred HHHHHHHHHHcCC-CeecCCCH---HHHHHHhCCCcccEE-eecCC
Confidence 4566666554444 66666654 479999999999988 44443
No 320
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=36.75 E-value=82 Score=22.22 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=21.5
Q ss_pred HHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHH
Q 029863 145 IATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 182 (186)
Q Consensus 145 l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l 182 (186)
-+-.|||+.+|.++|. ++ ..+.|..+-..-...+
T Consensus 76 ~Aw~lGi~k~PAVV~D--~~--~VVYG~~DV~~A~~~~ 109 (113)
T TIGR03757 76 DAWQLGVTKIPAVVVD--RR--YVVYGETDVARALALI 109 (113)
T ss_pred HHHHcCCccCCEEEEc--CC--eEEecCccHHHHHHHH
Confidence 3557999999999764 32 2466766544433333
No 321
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=36.67 E-value=34 Score=23.69 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=23.1
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE 141 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~ 141 (186)
..|+.+.|..|++....+++. ++.+-.+|+-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccc
Confidence 467899999999988777763 35666666543
No 322
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=35.88 E-value=65 Score=24.60 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=22.9
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 156 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 156 t~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
++++|+.|+.+ ..|+-+.++++..++++
T Consensus 55 a~LIF~SGK~V--cTGaKs~ed~~~av~~~ 82 (185)
T COG2101 55 AALIFRSGKVV--CTGAKSVEDVHRAVKKL 82 (185)
T ss_pred eEEEEecCcEE--EeccCcHHHHHHHHHHH
Confidence 67899999976 88999988888777654
No 323
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=34.75 E-value=86 Score=20.64 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=24.8
Q ss_pred hHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 143 PSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 143 ~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
..+|.++|+.|+ +--..+|.+.....| +++.+.++++.+
T Consensus 24 ~~~A~~~gl~G~--V~N~~dg~V~i~~~G--~~~~l~~f~~~l 62 (91)
T PF00708_consen 24 KRIARKLGLTGW--VRNLPDGSVEIEAEG--EEEQLEEFIKWL 62 (91)
T ss_dssp HHHHHHTT-EEE--EEE-TTSEEEEEEEE--EHHHHHHHHHHH
T ss_pred HHHHHHhCCceE--EEECCCCEEEEEEEe--CHHHHHHHHHHH
Confidence 367889999887 333457766556777 467777776643
No 324
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=34.40 E-value=1.7e+02 Score=23.61 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=27.6
Q ss_pred hHHHHHcCCCccc--EEEEE-eCCeEEEEEeCCCCHHHHHHHHH
Q 029863 143 PSIATRYGIRSIP--TVMIF-KNGEKKDTVIGAVPKSTLTTSIE 183 (186)
Q Consensus 143 ~~l~~~~~i~~~P--t~i~~-~~G~~~~~~~G~~~~~~l~~~l~ 183 (186)
.++.+.+|+...- -++++ .+|++.-.-.|..++++++.+.+
T Consensus 204 ~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 204 DDIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred HHHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 3566777886544 34344 68888777778888888876654
No 325
>PRK00394 transcription factor; Reviewed
Probab=34.39 E-value=70 Score=24.37 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=23.2
Q ss_pred cEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 155 PTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 155 Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
-|+++|..|+++ ..|..+.+++.+.++++
T Consensus 140 ~~~lIF~SGKvv--itGaks~~~~~~a~~~i 168 (179)
T PRK00394 140 VVVLLFGSGKLV--ITGAKSEEDAEKAVEKI 168 (179)
T ss_pred EEEEEEcCCEEE--EEecCCHHHHHHHHHHH
Confidence 378899999976 88998888887776654
No 326
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=34.07 E-value=70 Score=24.19 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=22.9
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 156 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 156 t~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
|+++|..|+++ +.|..+.+++.+.++.+
T Consensus 141 t~lIF~sGkvv--itGaks~~~~~~a~~~i 168 (174)
T cd00652 141 VLLIFVSGKIV--ITGAKSREDIYEAVEKI 168 (174)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHH
Confidence 68899999875 88999988888777654
No 327
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=33.89 E-value=86 Score=23.77 Aligned_cols=28 Identities=21% Similarity=0.517 Sum_probs=22.9
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 156 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 156 t~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
|+++|..|+++ ..|..+.++++..++++
T Consensus 140 ~~lIF~SGKvv--itGaks~~~~~~a~~~i 167 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSEEDAKRAVEKL 167 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHH
Confidence 68899999976 88998988888777654
No 328
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=33.10 E-value=67 Score=22.86 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=36.6
Q ss_pred CCCcccccchHHHHHHHHHhcC-------ceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEE
Q 029863 109 PWCGPCRMIHPIIDELSKQYVG-------KLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKD 167 (186)
Q Consensus 109 ~wC~~C~~~~p~l~~l~~~~~~-------~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~ 167 (186)
..|..|......+.++.+++.. .+.+-++.+++. +++++| -.-|++.+ ||..+.
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~--~~S~~I~i--nG~piE 73 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP--LESPTIRI--NGRPIE 73 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc--cCCCeeeE--CCEehh
Confidence 4799999988888776666432 266777777664 777777 56677654 665553
No 329
>PLN00062 TATA-box-binding protein; Provisional
Probab=32.77 E-value=75 Score=24.24 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=22.7
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 156 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 156 t~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
++++|..|+++ +.|....+++.+.++.+
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~ai~~i 167 (179)
T PLN00062 140 VLLIFVSGKIV--ITGAKVREEIYTAFENI 167 (179)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHH
Confidence 67889999876 88988888888777654
No 330
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=32.29 E-value=98 Score=23.00 Aligned_cols=44 Identities=14% Similarity=0.313 Sum_probs=36.8
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCC
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDE 141 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~ 141 (186)
.++-+.+.++++.++.|..+...++.+++.+.+ +|.+-.+++.+
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~~ 170 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECMH 170 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecccC
Confidence 456678888889999999999999999999988 78877776543
No 331
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=32.07 E-value=70 Score=25.09 Aligned_cols=41 Identities=24% Similarity=0.448 Sum_probs=26.5
Q ss_pred HHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEE-EeCCeEEE
Q 029863 122 DELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMI-FKNGEKKD 167 (186)
Q Consensus 122 ~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~-~~~G~~~~ 167 (186)
.++.+.+.. .+| .|....+.++|||+.+|.++. ..+|+...
T Consensus 157 ~~~~~~l~~--~vY---fdQ~G~Lt~rF~I~~VPAvV~~~q~G~~l~ 198 (209)
T PRK13738 157 PEMSKALDS--RIY---FDQNGVLCQRFGIDQVPARVSAVPGGRFLK 198 (209)
T ss_pred HHHHHHhCC--ceE---EcCcchHHHhcCCeeeceEEEEcCCCCEEE
Confidence 555555543 222 244557999999999999943 17787543
No 332
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=31.56 E-value=81 Score=23.83 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=22.5
Q ss_pred cEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 155 PTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 155 Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
.|+.+|.+|+.+ ..|..+.++++..++++
T Consensus 48 ~t~lIf~sGKiv--itGaks~~~~~~a~~~~ 76 (174)
T cd00652 48 TTALIFSSGKMV--ITGAKSEEDAKLAARKY 76 (174)
T ss_pred EEEEEECCCEEE--EEecCCHHHHHHHHHHH
Confidence 378899999865 78988888887766654
No 333
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=31.13 E-value=21 Score=22.38 Aligned_cols=34 Identities=29% Similarity=0.650 Sum_probs=19.0
Q ss_pred CcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC
Q 029863 111 CGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIR 152 (186)
Q Consensus 111 C~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~ 152 (186)
||.|-.. ++.+++.+ -++.+|. +..++|+++|+.
T Consensus 21 CP~Cgs~-----~~te~W~G--~~iIidp-e~SeIAkrlgi~ 54 (64)
T COG2093 21 CPVCGST-----DLTEEWFG--LLIIIDP-EKSEIAKRLGIK 54 (64)
T ss_pred CCCCCCc-----ccchhhcc--EEEEEcC-cHHHHHHHhCCC
Confidence 6666543 33444444 2333344 344899999984
No 334
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=30.94 E-value=84 Score=23.82 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=22.7
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 156 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 156 t~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
++++|..|+++ +.|....+++.+.++.+
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~a~~~i 167 (174)
T cd04516 140 VLLIFVSGKIV--LTGAKSREEIYQAFENI 167 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHH
Confidence 57888999876 88988888888877654
No 335
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=30.36 E-value=86 Score=23.73 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=23.1
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 156 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 156 t~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
|+++|..|+++ +.|..+.+++.+.++.+
T Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i 168 (174)
T cd04517 141 TLSIFSTGSVT--VTGARSMEDVREAVEKI 168 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHH
Confidence 68899999875 88998988888877764
No 336
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=30.01 E-value=92 Score=23.61 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 156 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 156 t~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
|+++|..|+.+ ..|..+.+++...++++
T Consensus 49 t~lIF~SGKiv--iTGaks~e~a~~a~~~i 76 (174)
T cd04516 49 TALIFSSGKMV--CTGAKSEDDSKLAARKY 76 (174)
T ss_pred EEEEECCCeEE--EEecCCHHHHHHHHHHH
Confidence 67899999865 78988888777655543
No 337
>PRK00394 transcription factor; Reviewed
Probab=29.84 E-value=89 Score=23.79 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=23.1
Q ss_pred cEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 155 PTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 155 Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
.|+++|.+|+.+ ..|+.+.+++...++++
T Consensus 47 ~t~lIf~sGKiv--~tGa~S~~~a~~a~~~~ 75 (179)
T PRK00394 47 IAALIFRSGKVV--CTGAKSVEDLHEAVKII 75 (179)
T ss_pred eEEEEEcCCcEE--EEccCCHHHHHHHHHHH
Confidence 578999999865 78998988887766654
No 338
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=29.23 E-value=55 Score=22.77 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCC
Q 029863 118 HPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNG 163 (186)
Q Consensus 118 ~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G 163 (186)
...++++.+..++ +.+.-++. .++++++|++.||.+ |...|
T Consensus 62 ~~~l~~Lr~lapg-l~l~P~sg---ddLa~rL~l~hYPvL-it~tg 102 (105)
T TIGR03765 62 AAALQRLRALAPG-LPLLPVSG---DDLAERLGLRHYPVL-ITATG 102 (105)
T ss_pred HHHHHHHHHHcCC-CcccCCCH---HHHHHHhCCCcccEE-EecCc
Confidence 4566666655544 66666554 479999999999988 44444
No 339
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=29.20 E-value=2.9e+02 Score=21.85 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=39.2
Q ss_pred CCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHH-HcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhhC
Q 029863 110 WCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIAT-RYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 186 (186)
Q Consensus 110 wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~-~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~l 186 (186)
.|+.|+++.-.+. .+-. .+++-.||+...++-.+ -..-...|-+.+ ||+. ..+.+.++++|++.+
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~------~tDs~~Ie~~Lee~l 85 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKW------VTDSDKIEEFLEEKL 85 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCce------eccHHHHHHHHHHhc
Confidence 3777766665555 2222 47888889887766554 444556676644 2321 246777888887653
No 340
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.12 E-value=70 Score=23.99 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=31.2
Q ss_pred hhHHHHHHHh--CCCcEEEEEECCCCcccccchHHHHHHHHHhcCc
Q 029863 88 DATWQSLVLD--SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK 131 (186)
Q Consensus 88 ~~~~~~~~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~ 131 (186)
.+.|..+.+. ..-..++..|+-.|.+.-.-.|.|-.-.++|.++
T Consensus 66 qerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~ 111 (213)
T KOG0095|consen 66 QERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANN 111 (213)
T ss_pred hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhc
Confidence 3455444332 2445677889999999999999997767777663
No 341
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=29.08 E-value=60 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=18.7
Q ss_pred EEEEECCCCcccccchHHHHHH
Q 029863 103 LVEFWAPWCGPCRMIHPIIDEL 124 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l 124 (186)
+..|+.+.|..|+.....+++.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678899999999988888774
No 342
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=28.83 E-value=1e+02 Score=23.34 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=21.8
Q ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 156 TVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 156 t~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
++++|.+|+.+ ..|..+.++++..++++
T Consensus 49 t~lIF~sGKiv--iTGaks~~~~~~a~~~~ 76 (174)
T cd04517 49 TASVWSSGKIT--ITGATSEEEAKQAARRA 76 (174)
T ss_pred EEEEECCCeEE--EEccCCHHHHHHHHHHH
Confidence 68899999865 78988888877666543
No 343
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=28.80 E-value=4.4e+02 Score=23.77 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=41.0
Q ss_pred cccccccChhHHHHHHHhCCCcEEEEEECCCCcc------cccchHHHHHHHHHhcCceEEEEEeCCCChHH--------
Q 029863 80 AVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGP------CRMIHPIIDELSKQYVGKLKCYKVNTDESPSI-------- 145 (186)
Q Consensus 80 ~~~v~~l~~~~~~~~~~~~~k~vvv~F~a~wC~~------C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l-------- 145 (186)
..++-.+++.+-+ ++..=+++|-|.+|.+.--+ =+.+...|++.++. .+++++-.+|-+.+++.
T Consensus 29 ~~k~ytLS~~T~~-~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~-s~~i~~~~iDP~~~~~~e~~~~~~~ 106 (552)
T TIGR03521 29 EDKRYTLSPASKE-VVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAY-NPNIKFRFVNPLEEEDEQGEEILDS 106 (552)
T ss_pred CCCceecCHHHHH-HHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCcchhhhhHHHHH
Confidence 3444555665553 33444788877776553211 12233444554433 34599999997765432
Q ss_pred HHHcCCCccc
Q 029863 146 ATRYGIRSIP 155 (186)
Q Consensus 146 ~~~~~i~~~P 155 (186)
+.+|||...+
T Consensus 107 ~~~~gi~~~~ 116 (552)
T TIGR03521 107 LAQYGIKPAN 116 (552)
T ss_pred HHHcCCCcce
Confidence 3458887655
No 344
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=28.74 E-value=2.6e+02 Score=23.63 Aligned_cols=82 Identities=10% Similarity=0.009 Sum_probs=51.0
Q ss_pred CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHH
Q 029863 99 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 178 (186)
Q Consensus 99 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l 178 (186)
+.|++ .+++....+-+.+...+.+++++..=.++. .+.-.-...-+-++.-.++||+.+--.-+..+......+.+++
T Consensus 250 ~Gp~i-~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~-~~~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~ 327 (350)
T TIGR03107 250 EGTLL-RFFDPGHIMLPRMKDFLLTTAEEAGIKYQY-YVAKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDF 327 (350)
T ss_pred CCceE-EEecCCCCCCHHHHHHHHHHHHHcCCCcEE-ecCCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeHHHH
Confidence 34554 577888889999999999999986544554 2221111122225566799998775444555555555666666
Q ss_pred HHHH
Q 029863 179 TTSI 182 (186)
Q Consensus 179 ~~~l 182 (186)
++.+
T Consensus 328 ~~~~ 331 (350)
T TIGR03107 328 LAAQ 331 (350)
T ss_pred HHHH
Confidence 5543
No 345
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=28.73 E-value=1.6e+02 Score=27.10 Aligned_cols=43 Identities=9% Similarity=-0.006 Sum_probs=33.7
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHH--hcCceEEEEEeCC
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQ--YVGKLKCYKVNTD 140 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~--~~~~v~~~~v~~d 140 (186)
.+...+|.|.|+..-.=|++.|.|-.|... +++++.++.+.-.
T Consensus 115 ~~~~~iVIFGASGDLAkRKL~PALf~L~~~g~Lp~~~~IiG~aRs 159 (604)
T PLN02333 115 ESTVSITVVGASGDLAKKKIFPALFALYYEGCLPEHFTIFGYARS 159 (604)
T ss_pred CCceEEEEecCccHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 355789999999999999999999998755 3445777777543
No 346
>PLN00062 TATA-box-binding protein; Provisional
Probab=28.38 E-value=98 Score=23.60 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=22.1
Q ss_pred cEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 155 PTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 155 Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
.++++|..|+.+ ..|..+.+++...++++
T Consensus 48 ~t~lIF~SGKiv--iTGaks~e~a~~a~~~~ 76 (179)
T PLN00062 48 TTALIFASGKMV--CTGAKSEHDSKLAARKY 76 (179)
T ss_pred EEEEEECCCeEE--EEecCCHHHHHHHHHHH
Confidence 378899999865 78988888877665543
No 347
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=27.58 E-value=1.1e+02 Score=23.28 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=22.5
Q ss_pred cEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 155 PTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 155 Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
.++++|.+|+.+ ..|..+.++....++++
T Consensus 48 ~t~lIF~SGKiv--~tGaks~~~a~~a~~~~ 76 (174)
T cd04518 48 IAALIFRSGKMV--CTGAKSVEDLHRAVKEI 76 (174)
T ss_pred EEEEEECCCeEE--EEccCCHHHHHHHHHHH
Confidence 378899999865 78998888777666554
No 348
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=27.45 E-value=1.3e+02 Score=18.68 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=22.0
Q ss_pred CcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 152 RSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 152 ~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
..=|.+.+..+| .+.+.++++++.+.++++
T Consensus 48 ~~~P~v~i~~~~----~~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 48 GLAPVVVVYPDG----VWYGRVTPEDVEEIVEEL 77 (77)
T ss_pred cCCCEEEEeCCC----eEEccCCHHHHHHHHHhC
Confidence 346888777655 366778899999988763
No 349
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=27.43 E-value=2.9e+02 Score=22.81 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=44.7
Q ss_pred CCCcEEEEEECCCCcccccchHHHHHHHHHhcCce--EEEEEeC---CCChHHHHHcCCC-cccEEEEEeCCeEEEEEeC
Q 029863 98 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKL--KCYKVNT---DESPSIATRYGIR-SIPTVMIFKNGEKKDTVIG 171 (186)
Q Consensus 98 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v--~~~~v~~---d~~~~l~~~~~i~-~~Pt~i~~~~G~~~~~~~G 171 (186)
......|..|+..|..=..+.|..+.. +=++ -++..|- +.++.+..+|+.. +.|++..+-=|.+. .+.|
T Consensus 73 ~~~t~~IR~Y~sDCn~le~v~pAa~~~----g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnEa-l~r~ 147 (305)
T COG5309 73 ASYTHSIRTYGSDCNTLENVLPAAEAS----GFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNEA-LNRN 147 (305)
T ss_pred ccCCceEEEeeccchhhhhhHHHHHhc----CceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechhh-hhcC
Confidence 345558888997665444433433332 2122 2333321 1123566667663 56765555445544 3667
Q ss_pred CCCHHHHHHHHHh
Q 029863 172 AVPKSTLTTSIEK 184 (186)
Q Consensus 172 ~~~~~~l~~~l~~ 184 (186)
..+.++|.+.|..
T Consensus 148 ~~tasql~~~I~~ 160 (305)
T COG5309 148 DLTASQLIEYIDD 160 (305)
T ss_pred CCCHHHHHHHHHH
Confidence 8889988887764
No 350
>PF04214 DUF411: Protein of unknown function, DUF; InterPro: IPR007332 The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.
Probab=26.94 E-value=1.8e+02 Score=18.67 Aligned_cols=44 Identities=27% Similarity=0.484 Sum_probs=31.6
Q ss_pred EEeCCCChHHHHHcCCC----cccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 029863 136 KVNTDESPSIATRYGIR----SIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 136 ~v~~d~~~~l~~~~~i~----~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
.++.++-..+-+++||. +--|.++ +| ..++|-++.+.+.++|++
T Consensus 4 ~~~~~dl~~ik~~~gVP~~l~SCHTa~v--~g---y~iEGHVPa~~I~~lL~e 51 (70)
T PF04214_consen 4 VVDTDDLSAIKQRLGVPPELASCHTAVV--GG---YVIEGHVPADDIKRLLAE 51 (70)
T ss_pred EEEccchHHHHHHhCCCchhccccEEEE--CC---EEEEccCCHHHHHHHHhc
Confidence 45666667788888884 3345544 46 468899999999999875
No 351
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.72 E-value=1.2e+02 Score=22.66 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=20.5
Q ss_pred cChhHHHHHHHhCCCcEEEEEECCCCcc
Q 029863 86 VTDATWQSLVLDSGSPVLVEFWAPWCGP 113 (186)
Q Consensus 86 l~~~~~~~~~~~~~k~vvv~F~a~wC~~ 113 (186)
+.-+...+.+++.+||+++.|..-|--+
T Consensus 120 isy~~lr~~I~e~dkp~LilfGTGwGlp 147 (190)
T COG4752 120 ISYSWLRNEIQERDKPWLILFGTGWGLP 147 (190)
T ss_pred ccHHHHHHHHhhcCCcEEEEecCCCCCC
Confidence 3445555667778999999999998644
No 352
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=26.11 E-value=99 Score=23.65 Aligned_cols=36 Identities=3% Similarity=0.025 Sum_probs=26.4
Q ss_pred EEEEEECCCCcccccchHHHHHHHHHhcCceEEEEE
Q 029863 102 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKV 137 (186)
Q Consensus 102 vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 137 (186)
.+=.|++.-||+|.--...++++.+.+.-.|....+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 445678889999999999999988765444444343
No 353
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=26.02 E-value=1.7e+02 Score=18.00 Aligned_cols=55 Identities=7% Similarity=0.171 Sum_probs=34.1
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcCceEEEEEeCCC----ChHHHHHcCCCcccEEEEEeCCe
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDE----SPSIATRYGIRSIPTVMIFKNGE 164 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~----~~~l~~~~~i~~~Pt~i~~~~G~ 164 (186)
..++.+-+++|+...-.+++..- ..+...++..+ .+++.+......+|++. .+|.
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 60 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKI----PFEECPIDLRKGEQLTPEFKKINPFGKVPAIV--DGDF 60 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCC----CcEEEEecCCCCCcCCHHHHHhCcCCCCCEEE--ECCE
Confidence 35677889999888777777532 24445555432 23555555667899885 3554
No 354
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=25.81 E-value=71 Score=21.88 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=23.0
Q ss_pred EEEECCCCcccccchHHHHHHHHHhcC-ceEEEEEeCCCChH
Q 029863 104 VEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPS 144 (186)
Q Consensus 104 v~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v~~d~~~~ 144 (186)
|..|-+.+...+++...-+++...+.. ++.+-.+|+..+++
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~ 44 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEE 44 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHH
Confidence 334445566667777666666555543 59999999987654
No 355
>PRK10853 putative reductase; Provisional
Probab=24.73 E-value=66 Score=22.60 Aligned_cols=31 Identities=3% Similarity=0.034 Sum_probs=22.1
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeC
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNT 139 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~ 139 (186)
+..|+-+.|..|+.....|++- ++.+-.+|.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~------~i~~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ------GIDYRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc------CCCcEEeeh
Confidence 4567889999999988888763 355555554
No 356
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=24.25 E-value=83 Score=21.45 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=21.0
Q ss_pred EECCCCcccccchHHHHHHHHHhcCceEEEEEeCCCC
Q 029863 106 FWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES 142 (186)
Q Consensus 106 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~ 142 (186)
|+-+.|..|+.....|++- ++.+-.+|+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~------gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN------GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT------T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc------CCCeEeehhhhC
Confidence 5678999999988888873 477777887654
No 357
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=24.03 E-value=1.3e+02 Score=23.15 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=12.4
Q ss_pred cChhHHHHHHHhCCCcEEEEEECCC
Q 029863 86 VTDATWQSLVLDSGSPVLVEFWAPW 110 (186)
Q Consensus 86 l~~~~~~~~~~~~~k~vvv~F~a~w 110 (186)
++-.++.+.+.+.++|+++.|.+-|
T Consensus 119 is~~~lr~~l~~~~~P~LllFGTGw 143 (185)
T PF09936_consen 119 ISYAELRRMLEEEDRPVLLLFGTGW 143 (185)
T ss_dssp B-HHHHHHHHHH--S-EEEEE--TT
T ss_pred cCHHHHHHHHhccCCeEEEEecCCC
Confidence 4455555555566777777777777
No 358
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=23.11 E-value=3.6e+02 Score=21.66 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=29.0
Q ss_pred CCcccccchHHHHHHHHHhcCceEEEEEeCCCCh-HHHHHcCCCcccEEEE
Q 029863 110 WCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESP-SIATRYGIRSIPTVMI 159 (186)
Q Consensus 110 wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~-~l~~~~~i~~~Pt~i~ 159 (186)
+|++|++..-.+++..- .+++..+|..+.+ ++.+---...+|++..
T Consensus 72 ~cp~s~rV~i~L~ekgi----~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~ 118 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHL----PYDMKLVDLTNKPEWFLKISPEGKVPVVKL 118 (265)
T ss_pred CCcHHHHHHHHHHHcCC----CCEEEEeCcCcCCHHHHhhCCCCCCCEEEE
Confidence 49999999988877632 2556667765533 3333222347899853
No 359
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=23.07 E-value=99 Score=22.03 Aligned_cols=31 Identities=6% Similarity=0.063 Sum_probs=22.1
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeC
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNT 139 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~ 139 (186)
+..|+-+.|..|++....|++- ++.+-.+|+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~------gi~~~~~d~ 33 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS------GHDVEVQDI 33 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCcEEEec
Confidence 4567789999999988888774 355555554
No 360
>PRK15113 glutathione S-transferase; Provisional
Probab=22.63 E-value=3.5e+02 Score=20.50 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=33.2
Q ss_pred CcEEEEEECC--CCcccccchHHHHHHHHHhcCceEEEEEeCCCC----hHHHHHcCCCcccEEE
Q 029863 100 SPVLVEFWAP--WCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES----PSIATRYGIRSIPTVM 158 (186)
Q Consensus 100 k~vvv~F~a~--wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~----~~l~~~~~i~~~Pt~i 158 (186)
++.+..++.+ .|++|++..-.+.+..- .+++..+|..+. +++.+.--...+|++.
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi----~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~ 63 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGL----PFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQ 63 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCccccCHHHHhcCCCCCCCEEE
Confidence 4455666654 59999888877777521 255666665432 3444333335789985
No 361
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=22.44 E-value=1.1e+02 Score=19.21 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=29.3
Q ss_pred EECCCCcccccchHHHHHHHHHhcCceEEEEEeCC----CChHHHHHcCCCcccEEE
Q 029863 106 FWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTD----ESPSIATRYGIRSIPTVM 158 (186)
Q Consensus 106 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d----~~~~l~~~~~i~~~Pt~i 158 (186)
+|...++.|++..-.+++..- ..+...++.. ..+++.+.-....+|++.
T Consensus 4 Ly~~~~~~~~~v~~~l~~~gl----~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (81)
T cd03048 4 LYTHGTPNGFKVSIMLEELGL----PYEIHPVDISKGEQKKPEFLKINPNGRIPAIV 56 (81)
T ss_pred EEeCCCCChHHHHHHHHHcCC----CcEEEEecCcCCcccCHHHHHhCcCCCCCEEE
Confidence 444445999998888887632 2444455532 234555544556789884
No 362
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.28 E-value=1.3e+02 Score=23.98 Aligned_cols=59 Identities=20% Similarity=0.392 Sum_probs=38.6
Q ss_pred CCcEEEEEE-----CCCCcccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCC-CcccEE-EEEeCCe
Q 029863 99 GSPVLVEFW-----APWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGI-RSIPTV-MIFKNGE 164 (186)
Q Consensus 99 ~k~vvv~F~-----a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i-~~~Pt~-i~~~~G~ 164 (186)
.++|++ |. .|-||..+.....+++. ++.+...|+-.+.++.+-... ...||+ -+|-+|+
T Consensus 138 a~~v~l-FmKG~p~~P~CGFS~~~v~iL~~~------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE 203 (227)
T KOG0911|consen 138 AKPVML-FMKGTPEEPKCGFSRQLVGILQSH------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE 203 (227)
T ss_pred cCeEEE-EecCCCCcccccccHHHHHHHHHc------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCE
Confidence 445554 55 57799999998888885 366777787777776554332 234553 3455785
No 363
>PRK14449 acylphosphatase; Provisional
Probab=22.22 E-value=2.4e+02 Score=18.59 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=21.0
Q ss_pred HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 144 SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 144 ~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
.+|.++++.++- -=..+|.+.-...| +.+.+.+|++.+
T Consensus 24 ~~A~~lgl~G~V--~N~~dG~Vei~~~G--~~~~v~~f~~~l 61 (90)
T PRK14449 24 QKAVSLGITGYA--ENLYDGSVEVVAEG--DEENIKELINFI 61 (90)
T ss_pred HHHHHcCCEEEE--EECCCCeEEEEEEe--CHHHHHHHHHHH
Confidence 567777777662 22346644444555 356666666543
No 364
>PRK10026 arsenate reductase; Provisional
Probab=22.22 E-value=96 Score=22.68 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=22.5
Q ss_pred EEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeC
Q 029863 103 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNT 139 (186)
Q Consensus 103 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~ 139 (186)
+..|+.+.|..|+.....|++- ++.+-.+|+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~------gi~~~~~d~ 34 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS------GTEPTIIHY 34 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCcEEEee
Confidence 5567899999999988888774 355555544
No 365
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=21.82 E-value=4.1e+02 Score=21.05 Aligned_cols=51 Identities=12% Similarity=-0.024 Sum_probs=32.5
Q ss_pred CCCcccccchHHHHHHHHHhcCceEEEEEeCCCC-hHHHHHcCCCcccEEEEEeCCeE
Q 029863 109 PWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDES-PSIATRYGIRSIPTVMIFKNGEK 165 (186)
Q Consensus 109 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~-~~l~~~~~i~~~Pt~i~~~~G~~ 165 (186)
.-|++|++..-.+.+. .-.+.+..+|.... +++.+.--...+|+++. +|..
T Consensus 17 ~~cp~~~rv~i~L~ek----gi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~ 68 (236)
T TIGR00862 17 GNCPFSQRLFMILWLK----GVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEV 68 (236)
T ss_pred CCCHhHHHHHHHHHHc----CCCcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEE
Confidence 4599999988887763 12366777777654 45554444457898843 5543
No 366
>PRK14429 acylphosphatase; Provisional
Probab=21.57 E-value=2.3e+02 Score=18.74 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=19.9
Q ss_pred HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 029863 144 SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 144 ~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
.+|.++|+.|+-.- ..+|.+.-...| +++.|++|++.
T Consensus 23 ~~A~~~gl~G~V~N--~~dG~Vei~~qG--~~~~i~~f~~~ 59 (90)
T PRK14429 23 TKARALGVTGYVTN--CEDGSVEILAQG--SDPAVDNLIAW 59 (90)
T ss_pred HHHHHhCCEEEEEE--CCCCeEEEEEEe--CHHHHHHHHHH
Confidence 56777777665322 246644444555 35556655554
No 367
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.57 E-value=39 Score=20.81 Aligned_cols=24 Identities=29% Similarity=0.665 Sum_probs=16.1
Q ss_pred CCCcEEEEEECCC-----------CcccccchHHH
Q 029863 98 SGSPVLVEFWAPW-----------CGPCRMIHPII 121 (186)
Q Consensus 98 ~~k~vvv~F~a~w-----------C~~C~~~~p~l 121 (186)
.|.+|+..-..-| ||.|+++...+
T Consensus 23 ~G~pVvALCGk~wvp~rdp~~~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 23 MGTPVVALCGKVWVPTRDPKPFPVCPECKEIYESL 57 (58)
T ss_pred cCceeEeeeCceeCCCCCCCCCCCCcCHHHHHHhc
Confidence 4777776655444 99998876543
No 368
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=21.45 E-value=63 Score=21.62 Aligned_cols=44 Identities=20% Similarity=0.408 Sum_probs=28.0
Q ss_pred CCChHHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHh
Q 029863 140 DESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 184 (186)
Q Consensus 140 d~~~~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~ 184 (186)
|+-.++++++|..++.-+ -+++|.....+.-..+++++.++++.
T Consensus 29 d~l~~~ak~~ga~gL~~i-kv~~~~~~s~i~kfl~e~~~~~l~~~ 72 (95)
T PF02938_consen 29 DKLEEFAKKFGAKGLAWI-KVEEGELKSPIAKFLSEEELKALIER 72 (95)
T ss_dssp CCCCCHHHHCCHCHCCCE-EESTCEEECTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceee-eEcCCcccCcccccCCHHHHHHHHHH
Confidence 444578999999998865 55566543333334466777666654
No 369
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=21.38 E-value=1.3e+02 Score=17.92 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCcEEEEEECCCCcccccchH--HHHHHH
Q 029863 90 TWQSLVLDSGSPVLVEFWAPWCGPCRMIHP--IIDELS 125 (186)
Q Consensus 90 ~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p--~l~~l~ 125 (186)
.|+.+....+...++..-..-|..|....| .+.++.
T Consensus 4 ~Y~rl~~~~~g~~va~v~~~~C~gC~~~l~~~~~~~i~ 41 (56)
T PF02591_consen 4 EYERLRKRKGGVAVARVEGGTCSGCHMELPPQELNEIR 41 (56)
T ss_pred HHHHHHhhcCCcEEEEeeCCccCCCCEEcCHHHHHHHH
Confidence 455554444788899999999999999885 445553
No 370
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=21.24 E-value=3.9e+02 Score=20.82 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=25.7
Q ss_pred CCcEEEEEECCCCcccccchHHHHHHHHHhcCceEEEEEeC
Q 029863 99 GSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNT 139 (186)
Q Consensus 99 ~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v~~ 139 (186)
+.--+..|-...|+.|......+.. -...+.+|.|+-
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a----~~~~~Diylvgs 144 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLA----DNAPLDLYLVGS 144 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhc----CCCceeEEEecC
Confidence 3344667888999999988776632 123488888883
No 371
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=21.15 E-value=3.5e+02 Score=20.04 Aligned_cols=59 Identities=12% Similarity=0.230 Sum_probs=39.3
Q ss_pred ccccchHHHHHHHHHhcCceEEEEEeCCCChHHHHHcCCC----------------cccEEEEE-eCCeEEEEEeC
Q 029863 113 PCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIR----------------SIPTVMIF-KNGEKKDTVIG 171 (186)
Q Consensus 113 ~C~~~~p~l~~l~~~~~~~v~~~~v~~d~~~~l~~~~~i~----------------~~Pt~i~~-~~G~~~~~~~G 171 (186)
|=+.--..+++.++.+..+......+.++-.++++.|++. +...++++ ++|+.+..+.+
T Consensus 98 P~~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 98 PERDTPEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp TTTC-HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred CCCCCHHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 4455566888888888777777776666667788888764 22344444 68888776643
No 372
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=21.05 E-value=2e+02 Score=21.22 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=20.8
Q ss_pred EEEEEeCCe--EEEEEeCCCCHHHHHHHHHhh
Q 029863 156 TVMIFKNGE--KKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 156 t~i~~~~G~--~~~~~~G~~~~~~l~~~l~~~ 185 (186)
.-++|+||. .+....-..++++++..+++.
T Consensus 72 ~~~VyDnG~~~vVi~v~~~i~~~~leaTL~Qa 103 (145)
T PF10726_consen 72 YPIVYDNGADQVVIAVPPDITPEALEATLEQA 103 (145)
T ss_pred eeEEEECCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 345788884 444555678899999888763
No 373
>PRK14420 acylphosphatase; Provisional
Probab=20.60 E-value=2.6e+02 Score=18.38 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=23.0
Q ss_pred HHHHHcCCCcccEEEEEeCCeEEEEEeCCCCHHHHHHHHHhh
Q 029863 144 SIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 185 (186)
Q Consensus 144 ~l~~~~~i~~~Pt~i~~~~G~~~~~~~G~~~~~~l~~~l~~~ 185 (186)
.+|.++|+.++-. =..+|.+.-...|. ++.|.+|++.+
T Consensus 23 ~~A~~~gl~G~V~--N~~dG~Vei~~qG~--~~~i~~f~~~l 60 (91)
T PRK14420 23 MEADKRKLTGWVK--NRDDGTVEIEAEGP--EEALQLFLDAI 60 (91)
T ss_pred HHHHHcCCEEEEE--ECCCCcEEEEEEEC--HHHHHHHHHHH
Confidence 5777888877621 12466554456664 56677776654
No 374
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=20.17 E-value=79 Score=20.02 Aligned_cols=26 Identities=19% Similarity=0.044 Sum_probs=15.0
Q ss_pred EEEEeCCeEEEEE---eCCCCHHHHHHHH
Q 029863 157 VMIFKNGEKKDTV---IGAVPKSTLTTSI 182 (186)
Q Consensus 157 ~i~~~~G~~~~~~---~G~~~~~~l~~~l 182 (186)
|-+.-||+.+... .|..+.+++.+.|
T Consensus 43 Fev~~~g~~v~sk~~~~~fp~~~~~~~~i 71 (72)
T TIGR02174 43 FEVTVNGQLVWSKLRGGGFPEPEELKQLI 71 (72)
T ss_pred EEEEECCEEEEEeccCCCCCCHHHHHHhh
Confidence 4444578766633 2455667776654
Done!