BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029864
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 189
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 106/182 (58%), Gaps = 7/182 (3%)
Query: 5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
++++A VARG +LA++ GNF + Q L K+P+ NNK TY+ + F+Y+ +
Sbjct: 3 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 62
Query: 65 YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDH 124
Y + D+ R +FL VK F + Y G +A TA +N EF L +++ H
Sbjct: 63 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKH---H 118
Query: 125 PE--EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSVSFRFCAT 182
E + K+ + +AQV E+KG+M+ NI+ V RGE++ELL+DKTENL SV+F+ +
Sbjct: 119 SENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDS-SVTFKTTSR 177
Query: 183 NV 184
N+
Sbjct: 178 NL 179
>pdb|2DMW|A Chain A, Solution Structure Of The Longin Domain Of Synaptobrevin-
Like Protein 1
Length = 131
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 2 SQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN 61
S ++++A VARG +LA++ GNF + Q L K+P+ NNK TY+ + F+Y+ +
Sbjct: 6 SGMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQD 65
Query: 62 GYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYC 121
Y + D+ R FL +K F + Y G +A TAP +N EF L +++
Sbjct: 66 RIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTAPPYAMNSEFSSVLAAQLKHH 124
Query: 122 VDHPEE 127
P
Sbjct: 125 SSGPSS 130
>pdb|4AFI|A Chain A, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
Adaptin From Ap3
pdb|4AFI|B Chain B, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
Adaptin From Ap3
Length = 173
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
++++A VARG +LA++ GNF + Q L K+P+ NNK TY+ + F+Y+ +
Sbjct: 55 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 114
Query: 65 YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQY 120
Y + D+ R +FL VK F + Y G +A TA +N EF L +++
Sbjct: 115 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKH 169
>pdb|2VX8|A Chain A, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|B Chain B, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|C Chain C, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|D Chain D, Vamp7 Longin Domain Hrb Peptide Complex
Length = 169
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
++++A VARG +LA++ GNF + Q L K+P+ NNK TY+ + F+Y+ +
Sbjct: 45 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 104
Query: 65 YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKL 114
Y + D+ R +FL VK F + Y G +A TA +N EF L
Sbjct: 105 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVL 153
>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 196
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 27 NFNSIAYQCLQKL-PASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERV 85
+ S A Q +KL S + T A TF+Y+++ G Y V+ + + +++ A+LE +
Sbjct: 33 QYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDL 92
Query: 86 KDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVM 145
EF ++ G K T EF +++ + +D L + ++ +V+ +M
Sbjct: 93 HSEFDEQH-GKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRAR-RNLGSINTELQDVQRIM 150
Query: 146 MENIEKVLDRGEKIELLVDKTENL 169
+ NIE+VL RGE + L K NL
Sbjct: 151 VANIEEVLQRGEALSALDSKANNL 174
>pdb|3KYQ|A Chain A, Lipid-Induced Conformational Switch Controls Fusion
Activity Of Longin Domain Snare Ykt6
Length = 199
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 57 YLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSK-----YGGGKAATAPANGLNKEFG 111
Y+ + V+AD ++ LE+V DEF + + G AT L+
Sbjct: 70 YVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYTALDGH-- 127
Query: 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 171
L +Y +P E ++KV+A++ E K ++ +E +L+RGEK++ LV K+E L
Sbjct: 128 -----LSRY--QNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGT 180
Query: 172 Q 172
Q
Sbjct: 181 Q 181
>pdb|3EGD|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 157
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 27 NFNSIAYQCLQKL-PASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERV 85
+ S A Q +KL S + T A TF+Y+++ G Y V+ + + +++ A+LE +
Sbjct: 32 QYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDL 91
Query: 86 KDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVM 145
EF ++ G K T EF +++ + +D L + ++ +V+ +M
Sbjct: 92 HSEFDEQH-GKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRAR-RNLGSINTELQDVQRIM 149
Query: 146 MENIEKVL 153
+ NIE+VL
Sbjct: 150 VANIEEVL 157
>pdb|2NPS|A Chain A, Crystal Structure Of The Early Endosomal Snare Complex
Length = 74
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169
K+ V+ QV EV VM ENI KV++RGE+++ L DK+E+L
Sbjct: 9 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESL 48
>pdb|3B5N|A Chain A, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|E Chain E, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|I Chain I, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 61
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 30/41 (73%)
Query: 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169
S+ A+++A++ + G+M +NI KV +RGE++ + DK +NL
Sbjct: 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNL 42
>pdb|1GL2|A Chain A, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSVSFRFCATNVC 185
++ ++++V VK +M +N+E++L RGE ++ L +KTE+L + S F+ + V
Sbjct: 10 RVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDL-EATSEHFKTTSQKVA 64
>pdb|1IFQ|A Chain A, Sec22b N-Terminal Domain
pdb|1IFQ|B Chain B, Sec22b N-Terminal Domain
Length = 138
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 27 NFNSIAYQCLQKL-PASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERV 85
+ S A Q +KL S + T A TF+Y+++ G Y V+ + + +++ A+LE +
Sbjct: 43 QYQSQAKQLFRKLNEQSPTRCTLEAGAXTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDL 102
Query: 86 KDEFVSKYG 94
EF ++G
Sbjct: 103 HSEFDEQHG 111
>pdb|1KIL|A Chain A, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 66
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170
+L + +AQV EV +M N++KVL+R +K+ L D+ + L
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 45
>pdb|1N7S|A Chain A, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 63
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170
+L + +AQV EV +M N++KVL+R +K+ L D+ + L
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 45
>pdb|3HD7|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 91
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170
+ +L + +AQV EV +M N++KVL+R +K+ L D+ + L
Sbjct: 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 46
>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex
pdb|1SFC|E Chain E, Neuronal Synaptic Fusion Complex
pdb|1SFC|I Chain I, Neuronal Synaptic Fusion Complex
Length = 96
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170
+L + +AQV EV +M N++KVL+R +K+ L D+ + L
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 71
>pdb|2KOG|A Chain A, Lipid-Bound Synaptobrevin Solution Nmr Structure
Length = 119
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170
+L + +AQV EV +M N++KVL+R +K+ L D+ + L
Sbjct: 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 74
>pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 80
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170
+L + +AQV EV +M N++KVL+R KI L D+ + L
Sbjct: 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQ 56
>pdb|3RK2|A Chain A, Truncated Snare Complex
pdb|3RK2|E Chain E, Truncated Snare Complex
pdb|3RK3|A Chain A, Truncated Snare Complex With Complexin
pdb|3RL0|A Chain A, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|E Chain E, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|I Chain I, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|M Chain M, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Q Chain Q, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|U Chain U, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Y Chain Y, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|CC Chain c, Truncated Snare Complex With Complexin (P1)
Length = 37
Score = 31.6 bits (70), Expect = 0.29, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159
+L + +AQV EV +M N++KVL+R +K+
Sbjct: 8 RLQQTQAQVDEVVDIMRVNVDKVLERDQKL 37
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 37 QKLPASNNKFTYNCD-AHTFNYLVDNGYTYC------VVADESSG--RQIPMAFLERVKD 87
Q +PA NN TY D + ++ ++ G T+ + E SG QI A LER++D
Sbjct: 180 QLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYA-LERIED 238
Query: 88 EFVSKYGGGKAATAPANGLNKEFGPKLK 115
Y + TA G+N + G +K
Sbjct: 239 ALKKVYLLAQGGTAVGTGINSKIGFDIK 266
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 127 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159
+ ++ ++++V VK +M +N+E++L RGE +
Sbjct: 278 HMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310
>pdb|1ITQ|A Chain A, Human Renal Dipeptidase
pdb|1ITQ|B Chain B, Human Renal Dipeptidase
pdb|1ITU|A Chain A, Human Renal Dipeptidase Complexed With Cilastatin
pdb|1ITU|B Chain B, Human Renal Dipeptidase Complexed With Cilastatin
Length = 369
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 97 KAATAPANGLNKEFG--PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLD 154
+ A A A G +F P++ E ++ +P+ I++L + +EVKG + +N+ +V +
Sbjct: 276 EVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFE 335
Query: 155 RGEKIELLVDKTE 167
E+ L E
Sbjct: 336 AVEQASNLTQAPE 348
>pdb|4DVY|P Chain P, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 876
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 104 NGLNKEFGP---KLKELMQYCVD---HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGE 157
NG NK+F LK L D +PE ISK+ + A ++E K ++ KV
Sbjct: 711 NGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKS 770
Query: 158 KIE----------LLVDKTENLHQQVSVS 176
+E + DK +NL+Q VSV+
Sbjct: 771 DLENSVKDVIINQKVTDKVDNLNQAVSVA 799
>pdb|4G0H|A Chain A, Crystal Structure Of The N-Terminal Domain Of Helicobacter
Pylori Caga Protein
Length = 916
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 104 NGLNKEFGP---KLKELMQYCVD---HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGE 157
NG NK+F LK L D +PE ISK+ + A ++E K ++ KV
Sbjct: 711 NGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKS 770
Query: 158 KIE----------LLVDKTENLHQQVSVS 176
+E + DK +NL+Q VSV+
Sbjct: 771 DLENSVKDVIINQKVTDKVDNLNQAVSVA 799
>pdb|4DVZ|A Chain A, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 569
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 104 NGLNKEFGP---KLKELMQYCVD---HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGE 157
NG NK+F LK L D +PE ISK+ + A ++E K ++ KV
Sbjct: 451 NGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKS 510
Query: 158 KIE----------LLVDKTENLHQQVSVS 176
+E + DK +NL+Q VSV+
Sbjct: 511 DLENSVKDVIINQKVTDKVDNLNQAVSVA 539
>pdb|3FIE|C Chain C, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
pdb|3FIE|D Chain D, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
Length = 38
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDR 155
+L + +AQV EV +M N++KVL+R
Sbjct: 10 RLQQTQAQVDEVVDIMRVNVDKVLER 35
>pdb|3FII|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh2)
Length = 33
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDR 155
+L + +AQV EV +M N++KVL+R
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLER 30
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic
Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse
Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic
Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse
Hindgut Metagenome
Length = 234
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 21 YTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMA 80
+T F F+ Q +K N +NC +N + +G + D+ P A
Sbjct: 21 FTHFGEGFDYYDSQLWEKADGWGNGGVFNCIWRAYNIELKDGILNLSITDDMPSSSKPYA 80
Query: 81 FLE-RVKDEF 89
E R +D+F
Sbjct: 81 GAEYRTRDKF 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,374,834
Number of Sequences: 62578
Number of extensions: 219137
Number of successful extensions: 717
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 40
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)