Query 029864
Match_columns 186
No_of_seqs 127 out of 882
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 07:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 2.5E-55 8.7E-60 332.5 3.2 175 3-179 1-175 (189)
2 2nut_C Vesicle-trafficking pro 100.0 8.9E-49 3.1E-53 298.6 12.3 178 4-184 1-190 (196)
3 3kyq_A YKT6, synaptobrevin hom 100.0 1.2E-42 4.2E-47 264.1 4.9 178 3-185 1-195 (199)
4 4afi_A AP-3 complex subunit de 100.0 7.8E-36 2.7E-40 221.6 14.6 119 4-123 54-172 (173)
5 2vx8_A Nucleoporin-like protei 100.0 2.5E-31 8.6E-36 196.8 12.3 121 3-124 43-163 (169)
6 3bw6_A Synaptobrevin homolog Y 99.9 2.4E-26 8.1E-31 166.5 13.1 123 4-130 5-144 (144)
7 1gl2_A Endobrevin; membrane pr 99.8 1.1E-19 3.8E-24 113.6 6.6 56 124-179 4-59 (65)
8 1n7s_A Vesicle-associated memb 99.8 4.7E-19 1.6E-23 110.3 7.0 52 128-179 3-54 (63)
9 3b5n_A Synaptobrevin homolog 1 99.8 9.7E-19 3.3E-23 108.0 7.4 51 129-179 2-52 (61)
10 2nps_A VAMP-4, vesicle-associa 99.8 3.1E-19 1.1E-23 114.4 4.1 56 124-179 3-58 (74)
11 1l4a_A Synaptobrevin; snare, s 99.7 1.5E-18 5.1E-23 112.9 4.0 56 124-179 10-65 (80)
12 1sfc_A VAMP 2, protein (synapt 99.7 9.3E-18 3.2E-22 112.5 7.0 52 128-179 29-80 (96)
13 3hd7_A Vesicle-associated memb 99.7 9E-18 3.1E-22 111.7 6.9 52 128-179 4-55 (91)
14 1urq_A M-tomosyn isoform; tran 99.6 2.2E-15 7.4E-20 92.9 6.3 51 129-179 4-54 (63)
15 2kog_A Vesicle-associated memb 99.6 2.9E-17 9.9E-22 114.2 -3.1 52 128-179 32-83 (119)
16 3zym_A Phosphatidylinositol-bi 98.5 6.7E-08 2.3E-12 77.7 3.2 32 128-159 279-310 (310)
17 3fie_C Fragment of vesicle-ass 98.4 4.4E-11 1.5E-15 66.0 -11.3 30 128-157 8-37 (38)
18 2fh5_A Signal recognition part 97.6 9.9E-05 3.4E-09 54.6 6.1 139 7-155 13-164 (185)
19 2vgl_S AP-2 complex subunit si 93.1 1.3 4.5E-05 30.8 10.0 48 47-94 49-96 (142)
20 1w63_Q Adapter-related protein 92.9 1.3 4.6E-05 31.4 9.9 90 5-94 1-96 (158)
21 2fz0_A R-snare NYV1P, V-snare 92.8 0.091 3.1E-06 36.4 3.3 60 28-87 46-114 (149)
22 3tjz_C Coatomer subunit zeta-1 89.6 4.1 0.00014 28.7 12.2 88 5-93 12-105 (153)
23 2vgl_M AP-2 complex subunit MU 89.5 7.5 0.00026 32.1 12.5 88 6-94 2-94 (435)
24 1w63_M Adaptor-related protein 89.3 2.8 9.5E-05 34.6 9.7 90 4-93 1-95 (423)
25 2j3t_C Trafficking protein par 85.8 5.6 0.00019 27.8 8.2 86 33-121 46-137 (145)
26 4a4y_A Protein MXIG; protein b 80.7 3.1 0.00011 27.3 4.7 43 5-59 85-127 (146)
27 2j3w_A Sedlin, trafficking pro 77.5 15 0.00051 25.3 11.7 74 45-121 64-139 (142)
28 3cue_A Transport protein parti 77.2 17 0.0006 27.2 8.5 75 46-121 120-218 (219)
29 1ccd_A Clara cell 17 KD protei 76.9 4.9 0.00017 24.9 4.7 44 112-155 21-64 (77)
30 2j3t_D Trafficking protein par 75.4 23 0.0008 26.5 10.4 86 33-121 119-209 (219)
31 1t3j_A Mitofusin 1; coiled coi 74.8 14 0.0005 23.9 7.0 47 129-175 36-82 (96)
32 1utg_A Uteroglobin; steroid bi 74.6 4 0.00014 24.8 3.7 44 112-155 19-62 (70)
33 1txp_A HnRNP C, heterogeneous 73.0 3.2 0.00011 20.3 2.3 24 133-160 3-26 (28)
34 2nps_B Syntaxin 13, vesicle-as 71.8 14 0.00047 22.3 6.9 43 129-171 6-48 (71)
35 3b5n_B Protein SSO1; snare com 67.9 17 0.00058 21.7 6.9 46 129-174 10-55 (69)
36 3cue_C Transport protein parti 66.9 30 0.001 24.3 8.2 57 33-91 52-113 (159)
37 1jth_B Syntaxin 1A; coiled-coi 65.8 20 0.00069 21.9 6.9 41 129-169 10-50 (77)
38 1n7s_B Syntaxin 1A; neuronal s 65.0 19 0.00066 21.4 6.9 46 129-174 12-57 (68)
39 1gl2_B Syntaxin 7; membrane pr 64.2 20 0.00067 21.2 6.9 46 129-174 9-54 (65)
40 1nhl_A Synaptosomal-associated 61.8 20 0.00068 20.4 7.0 43 133-175 4-46 (54)
41 3hd7_B Syntaxin-1A; membrane p 58.7 35 0.0012 22.3 7.0 42 129-170 21-62 (109)
42 1l4a_C S-SNAP25 fusion protein 56.5 34 0.0012 21.4 7.4 61 113-175 13-73 (83)
43 3lcn_C MRNA transport factor G 56.3 17 0.00056 17.7 3.3 21 128-148 5-25 (29)
44 1zkr_A Major allergen I polype 55.5 22 0.00074 25.0 4.8 44 112-155 20-64 (153)
45 1utr_A Uteroglobin; clara cell 55.4 8.9 0.0003 24.8 2.7 43 113-155 41-83 (96)
46 1n7s_C SNAP-25A; neuronal snar 54.2 36 0.0012 21.0 7.3 49 127-175 21-69 (79)
47 1sfc_B Protein (syntaxin 1A), 52.3 39 0.0013 20.9 6.9 44 129-172 21-64 (83)
48 2ygg_A Sodium/hydrogen exchang 50.1 20 0.00067 21.8 3.4 23 135-157 6-28 (70)
49 2pjw_V Vacuolar protein sortin 46.9 54 0.0018 20.9 6.7 42 128-169 32-73 (91)
50 2cly_A ATP synthase B chain, m 38.1 1E+02 0.0035 22.9 6.5 39 131-169 86-124 (214)
51 1deq_A Fibrinogen (alpha chain 32.9 2E+02 0.0067 23.4 9.2 28 128-155 108-135 (390)
52 3t97_C Nuclear pore glycoprote 31.6 65 0.0022 19.0 3.7 14 129-142 12-25 (64)
53 2kfe_A Meucin-24; alpha-helix, 29.4 27 0.00093 16.7 1.3 19 129-147 5-23 (26)
54 1pd7_B MAD1; PAH2, SIN3, eukar 29.0 44 0.0015 16.0 2.0 20 148-167 4-23 (26)
55 2cly_C ATP synthase coupling f 28.1 96 0.0033 19.1 4.0 41 79-121 10-51 (77)
56 2xus_A Breast cancer metastasi 27.5 58 0.002 18.2 2.7 15 129-143 32-46 (49)
57 3f4m_A Tumor necrosis factor, 26.3 1.7E+02 0.0059 20.6 6.3 75 71-157 86-160 (161)
58 1y4m_A HERV-FRD_6P24.1 proviru 21.4 1.2E+02 0.0042 17.1 3.4 20 129-148 7-26 (53)
59 1ykh_B RNA polymerase II holoe 21.3 1.2E+02 0.0041 20.6 4.0 24 129-152 3-26 (132)
60 2p22_C Protein SRN2; endosome, 20.5 2.4E+02 0.0081 20.4 5.7 47 129-179 62-108 (192)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=2.5e-55 Score=332.48 Aligned_cols=175 Identities=35% Similarity=0.572 Sum_probs=150.3
Q ss_pred CcceEEEEEEcCCeeEEeecCCCCCHHHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 029864 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (186)
Q Consensus 3 ~~~I~Y~~Iar~~~iL~e~~~~~~~~~~~a~~il~ki~~~~~k~~~~~~~~~f~~l~~~~~~~~~vt~~~~~~~~af~fL 82 (186)
.|+|+|+|||||++|||||+..+|||..+++.+|+++|+.++|.++++|+|.|||+.++|++|+|||+.+||+++||.||
T Consensus 1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 48999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCccchhhHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHH
Q 029864 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 162 (186)
Q Consensus 83 ~ei~~~f~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~~~~~~dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L 162 (186)
++|+++|.+.|+ ..+.++.|++++..|.+.|+++|++| +||.+.|++.+++.+|+||++||.+||+++|+|||+||.|
T Consensus 81 ~~i~~eF~~~~~-~~~~~~~~~~~~~~f~~~l~~~~~~y-~d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L 158 (189)
T 4b93_A 81 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHH-SENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELL 158 (189)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHH-HCC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCC
T ss_pred HHHHHHHHhhcc-ccccccCCccccchhhHHHHHHHHhh-hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999996 45667778888889999999999999 6777779999999999999999999999999999999999
Q ss_pred HHhhHHHHHhhHhhhhh
Q 029864 163 VDKTENLHQQVSVSFRF 179 (186)
Q Consensus 163 ~~ks~~L~~~s~~~~k~ 179 (186)
++||++|+.+|+.|.|+
T Consensus 159 ~~ks~~L~~~s~~f~~~ 175 (189)
T 4b93_A 159 IDKTENLVDSSVTFKTT 175 (189)
T ss_dssp EETTCC-----------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987655
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=8.9e-49 Score=298.61 Aligned_cols=178 Identities=25% Similarity=0.395 Sum_probs=116.7
Q ss_pred cceEEEEEEcC--CeeEEeecCCC---CC----HHHHHHHHHccCCC-CCCeeEEEeCCeEEEEEEeCCEEEEEEecCCC
Q 029864 4 KSLIYAFVARG--NVVLAEYTEFS---GN----FNSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLVDNGYTYCVVADESS 73 (186)
Q Consensus 4 ~~I~Y~~Iar~--~~iL~e~~~~~---~~----~~~~a~~il~ki~~-~~~k~~~~~~~~~f~~l~~~~~~~~~vt~~~~ 73 (186)
+||+|+||||+ ++|||+|++.+ |+ |..+++.+++++++ .++|.+++.++|.|||+.++|++|+|||+.+|
T Consensus 1 ~Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 1 SMVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp -CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred CceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 47999999999 79999998743 44 88999999999997 56899999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhhhCCCCCCC-CCCCCccchhhHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 029864 74 GRQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKV 152 (186)
Q Consensus 74 ~~~~af~fL~ei~~~f~~~~~~~~~~~-~~~~~l~~~F~~~l~~~~~~y~~~~~~~dkl~~i~~~l~ev~~im~~ni~~i 152 (186)
|+++||.||++|+++|...|+. .|.. +.|+++ ..|++.|+++|++| +||.+.|++.+++.+|+||++||.+||+++
T Consensus 81 p~r~af~fL~~i~~~F~~~~~~-~~~~~~~~~~~-~~f~~~l~~~~~~y-~~~~~~d~l~~~~~~l~ev~~im~~ni~~v 157 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSF-IEFDTFIQKTKKLY-IDSRARRNLGSINTELQDVQRIMVANIEEV 157 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTT-GGGHHHHHHHHTTT-SCCC-----------------CCEEEHHHH
T ss_pred chHHHHHHHHHHHHHHHHhccc-hhccccCCCch-HHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999974 4543 568998 59999999999999 788778999999999999999999999999
Q ss_pred HHhhhhhHHHHHhhHHHHHhhHhhhhh-hhccc
Q 029864 153 LDRGEKIELLVDKTENLHQQVSVSFRF-CATNV 184 (186)
Q Consensus 153 l~Rge~l~~L~~ks~~L~~~s~~~~k~-~~~n~ 184 (186)
|+|||+||.|++||++|+.+|+.|.|+ ++.|+
T Consensus 158 l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~ 190 (196)
T 2nut_C 158 LQRGEALSALDSKANNLSSLSKKYRQDAKYLNM 190 (196)
T ss_dssp C--------------------------------
T ss_pred HHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998777 44443
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=1.2e-42 Score=264.08 Aligned_cols=178 Identities=21% Similarity=0.308 Sum_probs=150.8
Q ss_pred CcceEEEEEEcCC----eeEEeecCCC----------CCHHH-HHHHHHccCCCCCCeeEEEeCCeEEE-EEEeCCEEEE
Q 029864 3 QKSLIYAFVARGN----VVLAEYTEFS----------GNFNS-IAYQCLQKLPASNNKFTYNCDAHTFN-YLVDNGYTYC 66 (186)
Q Consensus 3 ~~~I~Y~~Iar~~----~iL~e~~~~~----------~~~~~-~a~~il~ki~~~~~k~~~~~~~~~f~-~l~~~~~~~~ 66 (186)
+|.|++.+|.+.. .+|+...+.+ ++|.. +++.++++++|+ +|.++++++|.|| |+.++|++|+
T Consensus 1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~-~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKG-SRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTT-EEEEEECSSEEEEEEECTTSEEEE
T ss_pred CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCC-CeEEEEeCCEEEEEEEecCCEEEE
Confidence 4778898998842 4677665433 23433 567999999985 7999999999999 9999999999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhhCCCCCCCCCCCCccchhhHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHH
Q 029864 67 VVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMM 146 (186)
Q Consensus 67 ~vt~~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~~~~~~dkl~~i~~~l~ev~~im~ 146 (186)
|||+.+||+++||.||++|+++|.+.|+...|....+.+ ..| +.|+++|++| +||.+.|++.+++.+|+||++||.
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~--~~f-~~l~~~m~~Y-~dp~~~d~l~~~q~el~evk~iM~ 155 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPAT--IHY-TALDGHLSRY-QNPREADPMSKVQAELDETKIILH 155 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTT--CCC-CTHHHHHHHT-TSGGGCCCCHHHHHHHHTCCCEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccc--ccc-HHHHHHHHHh-CCchhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999755564333222 235 6789999999 889888999999999999999999
Q ss_pred HhHHHHHHhhhhhHHHHHhhHHHHHhhHhhhhh-hhcccC
Q 029864 147 ENIEKVLDRGEKIELLVDKTENLHQQVSVSFRF-CATNVC 185 (186)
Q Consensus 147 ~ni~~il~Rge~l~~L~~ks~~L~~~s~~~~k~-~~~n~~ 185 (186)
+||+++|+|||+||+|++||++|+.+|+.|.|+ ++.|||
T Consensus 156 ~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lnsC 195 (199)
T 3kyq_A 156 NTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNSC 195 (199)
T ss_dssp SSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999888 899997
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.8e-36 Score=221.63 Aligned_cols=119 Identities=32% Similarity=0.559 Sum_probs=113.8
Q ss_pred cceEEEEEEcCCeeEEeecCCCCCHHHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHH
Q 029864 4 KSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLE 83 (186)
Q Consensus 4 ~~I~Y~~Iar~~~iL~e~~~~~~~~~~~a~~il~ki~~~~~k~~~~~~~~~f~~l~~~~~~~~~vt~~~~~~~~af~fL~ 83 (186)
|+|+|||||||++|||||+..+|||..+++.+|++++++++|++++.++|.|||+.++|++|+||||.+||+++||.||+
T Consensus 54 M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLe 133 (173)
T 4afi_A 54 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLN 133 (173)
T ss_dssp CCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHH
T ss_pred ccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHH
Confidence 57999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCccchhhHHHHHHHHhccC
Q 029864 84 RVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVD 123 (186)
Q Consensus 84 ei~~~f~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~ 123 (186)
+|+++|.+.|+ ..|.++.||+++.+|++.|+++|++||+
T Consensus 134 dI~~eF~~~yg-~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 134 EVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-hhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 99999999996 5788899999989999999999999953
No 5
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.97 E-value=2.5e-31 Score=196.80 Aligned_cols=121 Identities=31% Similarity=0.550 Sum_probs=107.7
Q ss_pred CcceEEEEEEcCCeeEEeecCCCCCHHHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 029864 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (186)
Q Consensus 3 ~~~I~Y~~Iar~~~iL~e~~~~~~~~~~~a~~il~ki~~~~~k~~~~~~~~~f~~l~~~~~~~~~vt~~~~~~~~af~fL 82 (186)
.|+|+|++|+||++||+||++.++||..+++.+++++++.++|.+++.++|.|||+.++|++|+||||++||+++||.||
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 37899999999999999999989999999999999999977899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCccchhhHHHHHHHHhccCC
Q 029864 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDH 124 (186)
Q Consensus 83 ~ei~~~f~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~~ 124 (186)
++|+++|...|+ ..|..+.|++++.+|++.|++.|++|+++
T Consensus 123 edI~~eF~~~y~-~~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHT-TGGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhh-hhhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 999999999997 46777788999779999999999999543
No 6
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.94 E-value=2.4e-26 Score=166.49 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=99.4
Q ss_pred cceEEEEEEcC----CeeEEeecCCC----------CCH-HHHHHHHHccCCCCCCeeEEEeCCeEEEEE-EeCCEEEEE
Q 029864 4 KSLIYAFVARG----NVVLAEYTEFS----------GNF-NSIAYQCLQKLPASNNKFTYNCDAHTFNYL-VDNGYTYCV 67 (186)
Q Consensus 4 ~~I~Y~~Iar~----~~iL~e~~~~~----------~~~-~~~a~~il~ki~~~~~k~~~~~~~~~f~~l-~~~~~~~~~ 67 (186)
|.|+|.+|+|+ .++|+++++.+ ++| ..++++|++|++++ +|++++.++|.|||+ .++|++|+|
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~-~R~sv~~~~y~fH~~~~~~gl~~l~ 83 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-QRQSIEEGNYIGHVYARSEGICGVL 83 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT-EEEEEEETTEEEEEEECTTSEEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC-ceEEEEeCCEEEEEEEecCCEEEEE
Confidence 56777779998 57999998765 444 67899999999986 799999999999999 889999999
Q ss_pred EecCCCCcccHHHHHHHHHHHHHhhhCCCCCCCC-CCCCccchhhHHHHHHHHhccCCchhhHH
Q 029864 68 VADESSGRQIPMAFLERVKDEFVSKYGGGKAATA-PANGLNKEFGPKLKELMQYCVDHPEEISK 130 (186)
Q Consensus 68 vt~~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~-~~~~l~~~F~~~l~~~~~~y~~~~~~~dk 130 (186)
|||.+||+|+||.||++|+++|.+.|+...|.++ .+++ ...| +.|++.|++| +||.+.|+
T Consensus 84 i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kY-qdp~~aD~ 144 (144)
T 3bw6_A 84 ITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKY-QDPSQADA 144 (144)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHT-SCC-----
T ss_pred EECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHh-CchhhcCC
Confidence 9999999999999999999999999975446653 3121 2345 7899999999 89987775
No 7
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.80 E-value=1.1e-19 Score=113.62 Aligned_cols=56 Identities=27% Similarity=0.436 Sum_probs=48.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHhhhhh
Q 029864 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSVSFRF 179 (186)
Q Consensus 124 ~~~~~dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~~~k~ 179 (186)
+|...|++.+++.+|+||+.||.+||++||+|||+||.|++||++|+.+|..|.++
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~ 59 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTT 59 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666999999999999999999999999999999999999999999999987666
No 8
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.78 E-value=4.7e-19 Score=110.25 Aligned_cols=52 Identities=33% Similarity=0.412 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHhhhhh
Q 029864 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSVSFRF 179 (186)
Q Consensus 128 ~dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~~~k~ 179 (186)
.|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|..|.++
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~ 54 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETS 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999999999999999999999999999999987776
No 9
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.77 E-value=9.7e-19 Score=108.01 Aligned_cols=51 Identities=33% Similarity=0.507 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHhhhhh
Q 029864 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSVSFRF 179 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~~~k~ 179 (186)
|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|..|.++
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~ 52 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRG 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999987776
No 10
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.76 E-value=3.1e-19 Score=114.45 Aligned_cols=56 Identities=38% Similarity=0.492 Sum_probs=51.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHhhhhh
Q 029864 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSVSFRF 179 (186)
Q Consensus 124 ~~~~~dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~~~k~ 179 (186)
+|.+.|++.+++.+|+||++||.+||++||+|||+||.|++||++|+.+|..|.++
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~ 58 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNR 58 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46566999999999999999999999999999999999999999999999998776
No 11
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.73 E-value=1.5e-18 Score=112.88 Aligned_cols=56 Identities=32% Similarity=0.388 Sum_probs=52.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHhhhhh
Q 029864 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSVSFRF 179 (186)
Q Consensus 124 ~~~~~dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~~~k~ 179 (186)
+|.+.|+|.+++.+|+||++||.+||++||+|||+||.|++||++|+.+|..|.++
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~ 65 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEAS 65 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556999999999999999999999999999999999999999999999987766
No 12
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.72 E-value=9.3e-18 Score=112.53 Aligned_cols=52 Identities=33% Similarity=0.412 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHhhhhh
Q 029864 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSVSFRF 179 (186)
Q Consensus 128 ~dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~~~k~ 179 (186)
.|+|.+++.+|+||++||.+||++||+|||+||.|++||++|+.+|..|.++
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~ 80 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETS 80 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999987766
No 13
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.72 E-value=9e-18 Score=111.74 Aligned_cols=52 Identities=33% Similarity=0.446 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHhhhhh
Q 029864 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSVSFRF 179 (186)
Q Consensus 128 ~dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~~~k~ 179 (186)
.|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|+.|.++
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~ 55 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETS 55 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999987666
No 14
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.59 E-value=2.2e-15 Score=92.85 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHhhhhh
Q 029864 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSVSFRF 179 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~~~k~ 179 (186)
.++..++.++++|++||.+||+++++|||+|+.|++||++|..+|..|-+.
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~ 54 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKH 54 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999986443
No 15
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.58 E-value=2.9e-17 Score=114.24 Aligned_cols=52 Identities=33% Similarity=0.412 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHhhhhh
Q 029864 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSVSFRF 179 (186)
Q Consensus 128 ~dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~~~k~ 179 (186)
.|++.+++.+|+||++||.+||+++|+|||+||+|++||++|+.+|+.|.|+
T Consensus 32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~ 83 (119)
T 2kog_A 32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETS 83 (119)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999987666
No 16
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.47 E-value=6.7e-08 Score=77.71 Aligned_cols=32 Identities=31% Similarity=0.735 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 029864 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159 (186)
Q Consensus 128 ~dkl~~i~~~l~ev~~im~~ni~~il~Rge~l 159 (186)
.|.+.++|++|+||++||.+||+++|+|||+|
T Consensus 279 ~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 48999999999999999999999999999987
No 17
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.42 E-value=4.4e-11 Score=66.02 Aligned_cols=30 Identities=40% Similarity=0.550 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 029864 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGE 157 (186)
Q Consensus 128 ~dkl~~i~~~l~ev~~im~~ni~~il~Rge 157 (186)
.|++.+++.+|+||++||.+||+++|+||+
T Consensus 8 ~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 8 NRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 489999999999999999999999999997
No 18
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.63 E-value=9.9e-05 Score=54.58 Aligned_cols=139 Identities=14% Similarity=0.222 Sum_probs=69.9
Q ss_pred EEEEEEcCCeeEEeecCCCC----CHHHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEecCCCCcccHHH
Q 029864 7 IYAFVARGNVVLAEYTEFSG----NFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMA 80 (186)
Q Consensus 7 ~Y~~Iar~~~iL~e~~~~~~----~~~~~a~~il~ki~~~~~k~~~~~~~~~f~~l~~~--~~~~~~vt~~~~~~~~af~ 80 (186)
+.+.+.+|++||-.|+.... ....+++.++-.=..+ ..++++|+|...+..++ +++|++|-..-.+-.-+=.
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~~--~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~ 90 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 90 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccccC--CCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence 67888999999999854332 3556666665433222 23678899998888765 7999999777777777788
Q ss_pred HHHHHHHHHHhhhCCCCCCC-C------CCCCccchhhHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 029864 81 FLERVKDEFVSKYGGGKAAT-A------PANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVL 153 (186)
Q Consensus 81 fL~ei~~~f~~~~~~~~~~~-~------~~~~l~~~F~~~l~~~~~~y~~~~~~~dkl~~i~~~l~ev~~im~~ni~~il 153 (186)
||+.|+..|...|... ... . .+..+...|...+++.-... .. .. .+.....++... -.++++.++
T Consensus 91 LL~~v~~~Fv~~Y~~~-L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~~-~~----~~-~k~mr~fees~k-s~k~~~~~i 162 (185)
T 2fh5_A 91 LIDDVHRLFRDKYRTE-IQQQSALSLLNGTFDFQNDFLRLLREAEESS-KI----RA-PTTMKKFEDSEK-AKKPVRSMI 162 (185)
T ss_dssp HHHHHHHHHHHHTHHH-HHSSSTHHHHSCCCCCHHHHHHHHHHHHHHT-C------------------------------
T ss_pred HHHHHHHHHHHHHHHH-hhcccccccccccCchhHHHHHHHHHHHHHH-Hh----hh-HHhhccHhhhhh-hhhhhhhhc
Confidence 9999999999988522 111 0 11234344544444433222 10 11 333455556555 466666666
Q ss_pred Hh
Q 029864 154 DR 155 (186)
Q Consensus 154 ~R 155 (186)
++
T Consensus 163 ~~ 164 (185)
T 2fh5_A 163 ET 164 (185)
T ss_dssp --
T ss_pred cc
Confidence 55
No 19
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=93.10 E-value=1.3 Score=30.77 Aligned_cols=48 Identities=8% Similarity=0.166 Sum_probs=41.7
Q ss_pred EEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhC
Q 029864 47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (186)
Q Consensus 47 ~~~~~~~~f~~l~~~~~~~~~vt~~~~~~~~af~fL~ei~~~f~~~~~ 94 (186)
.++.+++.|.|...+++.|+|+++.+.+.-..+.||..+.+-+..-++
T Consensus 49 ~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 49 FVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 567889998888889999999999999999999999998888876653
No 20
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.90 E-value=1.3 Score=31.39 Aligned_cols=90 Identities=11% Similarity=0.172 Sum_probs=58.1
Q ss_pred ceEEEEEEc--CCeeEEeecC-CCCCHH-HHHHHHHccCCCC--CCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcccH
Q 029864 5 SLIYAFVAR--GNVVLAEYTE-FSGNFN-SIAYQCLQKLPAS--NNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (186)
Q Consensus 5 ~I~Y~~Iar--~~~iL~e~~~-~~~~~~-~~a~~il~ki~~~--~~k~~~~~~~~~f~~l~~~~~~~~~vt~~~~~~~~a 78 (186)
||...+|.. |.++|+-|=. ....++ .+.+.+.+.+... ..--.++.+++.|.|...+++.|+|+++.+...-..
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~ 80 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT 80 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 455666653 4567776632 222221 2333332222211 112246788999888888999999999999999999
Q ss_pred HHHHHHHHHHHHhhhC
Q 029864 79 MAFLERVKDEFVSKYG 94 (186)
Q Consensus 79 f~fL~ei~~~f~~~~~ 94 (186)
+.||..+.+-+..-++
T Consensus 81 le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 81 LELIHRYVELLDKYFG 96 (158)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999998888876664
No 21
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=92.83 E-value=0.091 Score=36.40 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=44.7
Q ss_pred HHHH-HHHHHccCCCCC----CeeEEE-eCCeEEEEEE---eCCEEEEEEecCCCCcccHHHHHHHHHH
Q 029864 28 FNSI-AYQCLQKLPASN----NKFTYN-CDAHTFNYLV---DNGYTYCVVADESSGRQIPMAFLERVKD 87 (186)
Q Consensus 28 ~~~~-a~~il~ki~~~~----~k~~~~-~~~~~f~~l~---~~~~~~~~vt~~~~~~~~af~fL~ei~~ 87 (186)
|..+ ...+++++.|-+ +|++.. .+||-.+|-. +++.+|+|.+..+.|+-++...|.+++.
T Consensus 46 Fh~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 46 FHNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 4443 345677766542 344443 4799888876 3678999999999999999999999975
No 22
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=89.57 E-value=4.1 Score=28.73 Aligned_cols=88 Identities=11% Similarity=0.157 Sum_probs=62.7
Q ss_pred ceEEEEEEc--CCeeEEeecCCC-CCH---HHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcccH
Q 029864 5 SLIYAFVAR--GNVVLAEYTEFS-GNF---NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (186)
Q Consensus 5 ~I~Y~~Iar--~~~iL~e~~~~~-~~~---~~~a~~il~ki~~~~~k~~~~~~~~~f~~l~~~~~~~~~vt~~~~~~~~a 78 (186)
||.+.+|.. |.++|+-|=... ++. ..+.+.+..++...+. -.+..+++.+.|..-.++.|+++++.+...-..
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~-~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDS-EIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCC-CEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 677777764 557888774421 221 1123334444332222 356788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029864 79 MAFLERVKDEFVSKY 93 (186)
Q Consensus 79 f~fL~ei~~~f~~~~ 93 (186)
+.||..+.+.+..-+
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998888777
No 23
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=89.48 E-value=7.5 Score=32.12 Aligned_cols=88 Identities=11% Similarity=0.110 Sum_probs=57.3
Q ss_pred eEEEEEEc--CCeeEEeecCCCCCHHHHHHHHHccCCCC---CCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHH
Q 029864 6 LIYAFVAR--GNVVLAEYTEFSGNFNSIAYQCLQKLPAS---NNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMA 80 (186)
Q Consensus 6 I~Y~~Iar--~~~iL~e~~~~~~~~~~~a~~il~ki~~~---~~k~~~~~~~~~f~~l~~~~~~~~~vt~~~~~~~~af~ 80 (186)
|...+|.. |..+|+-+=..... ...+......+... ..--.++.+++.|.|...+++.|+|+++.+...-..+.
T Consensus 2 I~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le 80 (435)
T 2vgl_M 2 IGGLFIYNHKGEVLISRVYRDDIG-RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFE 80 (435)
T ss_dssp CCEEEEECTTCCEEEEEECSSSCC-HHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHH
T ss_pred eEEEEEECCCCCEEEEEecCCCCC-hhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHH
Confidence 44445543 45667665332211 23333333333221 12235678899999998899999999999999999999
Q ss_pred HHHHHHHHHHhhhC
Q 029864 81 FLERVKDEFVSKYG 94 (186)
Q Consensus 81 fL~ei~~~f~~~~~ 94 (186)
||..+.+-+..-++
T Consensus 81 ~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 81 FLYKMCDVMAAYFG 94 (435)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh
Confidence 99998888776664
No 24
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=89.25 E-value=2.8 Score=34.62 Aligned_cols=90 Identities=12% Similarity=0.149 Sum_probs=58.5
Q ss_pred cceEEEEEEc--CCeeEEee-cC-CCCC-HHHHHHHHHccCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcccH
Q 029864 4 KSLIYAFVAR--GNVVLAEY-TE-FSGN-FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (186)
Q Consensus 4 ~~I~Y~~Iar--~~~iL~e~-~~-~~~~-~~~~a~~il~ki~~~~~k~~~~~~~~~f~~l~~~~~~~~~vt~~~~~~~~a 78 (186)
|||...+|.. |..+|+-+ .. ...+ .+..-+.++.+......--.++.+++.|.|...+++.|+|+++.+...-..
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 5777777765 34555554 21 1212 223333444332211112356788999999988999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029864 79 MAFLERVKDEFVSKY 93 (186)
Q Consensus 79 f~fL~ei~~~f~~~~ 93 (186)
+.||..+.+-+..-+
T Consensus 81 le~L~~~v~~l~~yf 95 (423)
T 1w63_M 81 FSFLYKVVQVFSEYF 95 (423)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888776655
No 25
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=85.77 E-value=5.6 Score=27.75 Aligned_cols=86 Identities=10% Similarity=0.143 Sum_probs=55.5
Q ss_pred HHHHccCCCC---CCeeEEEeCCeEEE-EEEeCCEEEEEEecCCCCcccHHHHHHHHH-HHHHhhhCCCCCCC-CCCCCc
Q 029864 33 YQCLQKLPAS---NNKFTYNCDAHTFN-YLVDNGYTYCVVADESSGRQIPMAFLERVK-DEFVSKYGGGKAAT-APANGL 106 (186)
Q Consensus 33 ~~il~ki~~~---~~k~~~~~~~~~f~-~l~~~~~~~~~vt~~~~~~~~af~fL~ei~-~~f~~~~~~~~~~~-~~~~~l 106 (186)
..+.+++.|. ..-.+++.++|..| |....|+=|+.++++..+ -.-.||.+|. ..|..-.-.+.+-. ..|-.
T Consensus 46 ~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~- 122 (145)
T 2j3t_C 46 RSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVG--PIRDVLHHIYSALYVEFVVKNPLCPLGQTVQ- 122 (145)
T ss_dssp HHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCC--CCHHHHHHHHHTTHHHHTTTCTTSCTTSCCC-
T ss_pred HHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcc--hHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-
Confidence 4566666664 24567778888666 555689999999998643 3668999999 67765332233211 11211
Q ss_pred cchhhHHHHHHHHhc
Q 029864 107 NKEFGPKLKELMQYC 121 (186)
Q Consensus 107 ~~~F~~~l~~~~~~y 121 (186)
...|+..++.+++.+
T Consensus 123 s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 123 SELFRSRLDSYVRSL 137 (145)
T ss_dssp CHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHhC
Confidence 256888888888654
No 26
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=80.70 E-value=3.1 Score=27.31 Aligned_cols=43 Identities=14% Similarity=0.431 Sum_probs=33.6
Q ss_pred ceEEEEEEcCCeeEEeecCCCCCHHHHHHHHHccCCCCCCeeEEEeCCeEEEEEE
Q 029864 5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLV 59 (186)
Q Consensus 5 ~I~Y~~Iar~~~iL~e~~~~~~~~~~~a~~il~ki~~~~~k~~~~~~~~~f~~l~ 59 (186)
-|+|..|++++ +|+++++.| +++.-+.+--++++++..||...
T Consensus 85 giiyltiskdn--icqfsdekg----------eqidinsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 85 GIIYLTISKDN--ICQFSDEKG----------EQIDINSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEEECTTC--CEEEECTTS----------CEECCCSSSSEEEETTEEEEEEE
T ss_pred cEEEEEEecCc--ceecccccC----------cEeeccccccceeecceEeehhc
Confidence 48999999988 599998776 45555545568999999999864
No 27
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=77.49 E-value=15 Score=25.34 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=48.6
Q ss_pred eeEEEeCCeEEE-EEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhCCCCCCC-CCCCCccchhhHHHHHHHHhc
Q 029864 45 KFTYNCDAHTFN-YLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGPKLKELMQYC 121 (186)
Q Consensus 45 k~~~~~~~~~f~-~l~~~~~~~~~vt~~~~~~~~af~fL~ei~~~f~~~~~~~~~~~-~~~~~l~~~F~~~l~~~~~~y 121 (186)
+.+...++|..| |....|+=|+.++++. ...-.-.||.+|...|....- +.+-. ..|-. ...|+..++++++.|
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~-s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIR-SSAFDRKVQFLGKKH 139 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCC-CHHHHHHHHHHHHHH
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhc-CCCCCCCCcee-cHHHHHHHHHHHHHh
Confidence 345556777655 5566899999999873 244567899999988876543 33321 11211 256888898888765
No 28
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=77.18 E-value=17 Score=27.19 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=46.7
Q ss_pred eEEEeCCeEEE-EEEeCCEEEEEEecCCCCc----------------------ccHHHHHHHHHHHHHhhhCCCCCCC-C
Q 029864 46 FTYNCDAHTFN-YLVDNGYTYCVVADESSGR----------------------QIPMAFLERVKDEFVSKYGGGKAAT-A 101 (186)
Q Consensus 46 ~~~~~~~~~f~-~l~~~~~~~~~vt~~~~~~----------------------~~af~fL~ei~~~f~~~~~~~~~~~-~ 101 (186)
..+..+.|..| |....|+=|++++++..+. ..+-.||.+|...|....-.+.+-. .
T Consensus 120 ~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~ 199 (219)
T 3cue_A 120 RQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSME 199 (219)
T ss_dssp CEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTT
T ss_pred EEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 45666776655 5556899999999987633 4467899999988876332232211 1
Q ss_pred CCCCccchhhHHHHHHHHhc
Q 029864 102 PANGLNKEFGPKLKELMQYC 121 (186)
Q Consensus 102 ~~~~l~~~F~~~l~~~~~~y 121 (186)
.|-. ...|+..++.+++.+
T Consensus 200 ~pI~-S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 200 MPIR-SNLFDEKVKKMVENL 218 (219)
T ss_dssp SCCC-CHHHHHHHHHHHHHH
T ss_pred Cccc-cHHHHHHHHHHHHhc
Confidence 1111 246777787777654
No 29
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=76.89 E-value=4.9 Score=24.93 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=36.1
Q ss_pred HHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 029864 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (186)
Q Consensus 112 ~~l~~~~~~y~~~~~~~dkl~~i~~~l~ev~~im~~ni~~il~R 155 (186)
+..+..++.|+.+|.......++++-++....-=+.||.++|++
T Consensus 21 ~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 21 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667788887788888999999999998888888888888765
No 30
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=75.35 E-value=23 Score=26.50 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=57.3
Q ss_pred HHHHccCCCCC---CeeEEEeCCeEEE-EEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhCCCCCCC-CCCCCcc
Q 029864 33 YQCLQKLPASN---NKFTYNCDAHTFN-YLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-APANGLN 107 (186)
Q Consensus 33 ~~il~ki~~~~---~k~~~~~~~~~f~-~l~~~~~~~~~vt~~~~~~~~af~fL~ei~~~f~~~~~~~~~~~-~~~~~l~ 107 (186)
..+..++.|.+ .-.+++.+.|..| |....|+=|++++++. ..-.-.||.+|...|....-.+.+-. ..|-. .
T Consensus 119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~-s 195 (219)
T 2j3t_D 119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIR-C 195 (219)
T ss_dssp HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCC-C
T ss_pred HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccc-h
Confidence 44556776642 3346778888766 5456899999999975 55567899999987776433233221 11211 3
Q ss_pred chhhHHHHHHHHhc
Q 029864 108 KEFGPKLKELMQYC 121 (186)
Q Consensus 108 ~~F~~~l~~~~~~y 121 (186)
..|+..++.+++.+
T Consensus 196 ~~Fd~~v~~l~~~~ 209 (219)
T 2j3t_D 196 ELFDQNLKLALEVA 209 (219)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 67899999999776
No 31
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=74.83 E-value=14 Score=23.86 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHh
Q 029864 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSV 175 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~ 175 (186)
.-...+..+|++|+.-|.+=|..+=.+=..||.+..++..|...|.-
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~ 82 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQ 82 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45678899999999999999999999999999999888888887763
No 32
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=74.55 E-value=4 Score=24.81 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=35.1
Q ss_pred HHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 029864 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (186)
Q Consensus 112 ~~l~~~~~~y~~~~~~~dkl~~i~~~l~ev~~im~~ni~~il~R 155 (186)
+..+..++.|+.+|.......++++-++....-=+.||.++|++
T Consensus 19 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 19 SSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44666778887788888899999999988777777888887765
No 33
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=72.98 E-value=3.2 Score=20.31 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhH
Q 029864 133 KVKAQVSEVKGVMMENIEKVLDRGEKIE 160 (186)
Q Consensus 133 ~i~~~l~ev~~im~~ni~~il~Rge~l~ 160 (186)
.|+.+|.++| .+||.+|+|=|+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 4566666665 47888888877654
No 34
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=71.75 E-value=14 Score=22.26 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHH
Q 029864 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 171 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~ 171 (186)
..+.+|+..+.|+.+++.+==.-|.+.|+-||.+....+.-..
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 48 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEV 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999998877555443
No 35
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=67.93 E-value=17 Score=21.74 Aligned_cols=46 Identities=17% Similarity=0.358 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhH
Q 029864 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVS 174 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (186)
+.+.+|...+.|+.+++.+==..|.+.|+-||.+....+.-.....
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 55 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVE 55 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999887776555443
No 36
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=66.92 E-value=30 Score=24.34 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=40.4
Q ss_pred HHHHccCCCCC---CeeEEEeCCeEEEEE-EeCCEEEEEEecCCCCcccHHHHHHHHHH-HHHh
Q 029864 33 YQCLQKLPASN---NKFTYNCDAHTFNYL-VDNGYTYCVVADESSGRQIPMAFLERVKD-EFVS 91 (186)
Q Consensus 33 ~~il~ki~~~~---~k~~~~~~~~~f~~l-~~~~~~~~~vt~~~~~~~~af~fL~ei~~-~f~~ 91 (186)
+.+.+++.|.+ .-..++.+.|..|+. ...|+=|++++|+.. .-.-.+|.+|.. .|..
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~--~~i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQ--QSYTQVLQYIYSHIYVK 113 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSS--SCTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCc--chHHHHHHHHHHHHHHH
Confidence 55667777653 445667788877655 457999999999763 345578888886 6665
No 37
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=65.81 E-value=20 Score=21.86 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHH
Q 029864 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L 169 (186)
+.+.+|+..+.|+.+++.+==..|.+.|+-||.+....+.-
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a 50 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 68999999999999999999999999999999886655443
No 38
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=65.04 E-value=19 Score=21.37 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhH
Q 029864 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVS 174 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (186)
+.+.+|...+.|+.+++.+==..+.+.|+-||.+....+.-.....
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 57 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVE 57 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999887776655443
No 39
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=64.21 E-value=20 Score=21.17 Aligned_cols=46 Identities=13% Similarity=0.298 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhH
Q 029864 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVS 174 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~ 174 (186)
..+.+|+..+.|+.+++.+==.-+.+.|+-||.+....+.-.....
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 54 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQ 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999887776665544
No 40
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=61.76 E-value=20 Score=20.38 Aligned_cols=43 Identities=7% Similarity=0.207 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHh
Q 029864 133 KVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSV 175 (186)
Q Consensus 133 ~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~ 175 (186)
....-+.|+.++....+..+-..||.|+.....-++.....+.
T Consensus 4 ~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~ 46 (54)
T 1nhl_A 4 RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRE 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHH
Confidence 4566788999999999999999999999998888887766553
No 41
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=58.68 E-value=35 Score=22.32 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHH
Q 029864 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~ 170 (186)
+.+.+++..+.|+.+++.+==..+-+.|+.||.+....+.-.
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~ 62 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 62 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 688999999999999999888888999999998877655433
No 42
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=56.46 E-value=34 Score=21.42 Aligned_cols=61 Identities=8% Similarity=0.230 Sum_probs=48.2
Q ss_pred HHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHh
Q 029864 113 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSV 175 (186)
Q Consensus 113 ~l~~~~~~y~~~~~~~dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~ 175 (186)
.++..+.+. .+ ...+.....-.-+++.+.+...++..+..-||+|+......+.+...-+.
T Consensus 13 ~l~~~~~~~-~~-esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~ 73 (83)
T 1l4a_C 13 EIQQQCNQV-TD-DSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKD 73 (83)
T ss_dssp HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-HH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 23 33578888888999999999999999999999999999999888877553
No 43
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=56.26 E-value=17 Score=17.75 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 029864 128 ISKLAKVKAQVSEVKGVMMEN 148 (186)
Q Consensus 128 ~dkl~~i~~~l~ev~~im~~n 148 (186)
.+|+.-++..++|-++|..++
T Consensus 5 ~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999998775
No 44
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=55.46 E-value=22 Score=25.04 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHHHHHHhccCCchhhHHHHHHHHHHH-HHHHHHHHhHHHHHHh
Q 029864 112 PKLKELMQYCVDHPEEISKLAKVKAQVS-EVKGVMMENIEKVLDR 155 (186)
Q Consensus 112 ~~l~~~~~~y~~~~~~~dkl~~i~~~l~-ev~~im~~ni~~il~R 155 (186)
+..+..++.|+.+|.......++++-++ ....-=+.||.++|++
T Consensus 20 eeYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLek 64 (153)
T 1zkr_A 20 DEYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDK 64 (153)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 3466677888778888899999999999 5555555566666654
No 45
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=55.43 E-value=8.9 Score=24.77 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=33.5
Q ss_pred HHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 029864 113 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (186)
Q Consensus 113 ~l~~~~~~y~~~~~~~dkl~~i~~~l~ev~~im~~ni~~il~R 155 (186)
..+..++.|+.+|...+...++++-+++....=+.||.++|++
T Consensus 41 ~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 41 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555677887777777889999999988777777788777764
No 46
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=54.18 E-value=36 Score=20.99 Aligned_cols=49 Identities=12% Similarity=0.262 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHh
Q 029864 127 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSV 175 (186)
Q Consensus 127 ~~dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~ 175 (186)
..+.+.....-+.|+.++-...+..+-..||.|+.....-++....-+.
T Consensus 21 s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~ 69 (79)
T 1n7s_C 21 SLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKE 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHH
Confidence 3488899999999999999999999999999999999888877766543
No 47
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=52.34 E-value=39 Score=20.88 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHh
Q 029864 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 172 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~ 172 (186)
..+.+|...+.|+.+++.+==.-|.+.|+-||.+....+.-...
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 64 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999887766554443
No 48
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=50.06 E-value=20 Score=21.75 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhh
Q 029864 135 KAQVSEVKGVMMENIEKVLDRGE 157 (186)
Q Consensus 135 ~~~l~ev~~im~~ni~~il~Rge 157 (186)
..+++++++|+..|+.++=+|.-
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 46789999999999999988753
No 49
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=46.87 E-value=54 Score=20.90 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHH
Q 029864 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169 (186)
Q Consensus 128 ~dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L 169 (186)
..++..+-.++..++--|..+|++-.++-+.|-+|.+|-...
T Consensus 32 d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a 73 (91)
T 2pjw_V 32 DSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEI 73 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999988888887775543
No 50
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=38.11 E-value=1e+02 Score=22.86 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHH
Q 029864 131 LAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169 (186)
Q Consensus 131 l~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L 169 (186)
+.++.+.++++++.=.+.+...|+....+...++.+..|
T Consensus 86 ~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~L 124 (214)
T 2cly_A 86 NEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYL 124 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666655566666666666666666666555
No 51
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.94 E-value=2e+02 Score=23.37 Aligned_cols=28 Identities=4% Similarity=0.179 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 029864 128 ISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (186)
Q Consensus 128 ~dkl~~i~~~l~ev~~im~~ni~~il~R 155 (186)
.+.+.++-.+|+.=...+.++|+.-|.+
T Consensus 108 dn~~~e~s~eLe~~i~~lk~~V~~q~~~ 135 (390)
T 1deq_A 108 DNTFKQINEDLRSRIEILRRKVIEQVQR 135 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3677888888888888888888877773
No 52
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=31.60 E-value=65 Score=19.04 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 029864 129 SKLAKVKAQVSEVK 142 (186)
Q Consensus 129 dkl~~i~~~l~ev~ 142 (186)
+||.++..++..++
T Consensus 12 ekI~~L~~~v~~~e 25 (64)
T 3t97_C 12 EKITSLHREVEKVK 25 (64)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555444443
No 53
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=29.37 E-value=27 Score=16.75 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029864 129 SKLAKVKAQVSEVKGVMME 147 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~ 147 (186)
.-+.+|+..|.++++-|..
T Consensus 5 ei~~kiK~kl~~akdK~k~ 23 (26)
T 2kfe_A 5 EFMSNLKEKLSGVKEKMKN 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3567778888888877653
No 54
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=29.01 E-value=44 Score=15.98 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=15.0
Q ss_pred hHHHHHHhhhhhHHHHHhhH
Q 029864 148 NIEKVLDRGEKIELLVDKTE 167 (186)
Q Consensus 148 ni~~il~Rge~l~~L~~ks~ 167 (186)
||+.+|+-.+-||..+.+++
T Consensus 4 nvq~LLeAAeyLErrEre~E 23 (26)
T 1pd7_B 4 NIQMLLEAADYLERREREAE 23 (26)
T ss_dssp STHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 77888888888887776554
No 55
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=28.14 E-value=96 Score=19.07 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhhC-CCCCCCCCCCCccchhhHHHHHHHHhc
Q 029864 79 MAFLERVKDEFVSKYG-GGKAATAPANGLNKEFGPKLKELMQYC 121 (186)
Q Consensus 79 f~fL~ei~~~f~~~~~-~~~~~~~~~~~l~~~F~~~l~~~~~~y 121 (186)
-.||+.|+ +|.+.-. ....-.+. ......+...|.++-+.|
T Consensus 10 qLFldKIR-EYk~Ks~~~G~lVD~~-Pe~~kel~~el~kL~~~Y 51 (77)
T 2cly_C 10 KLFVDKIR-EYRTKRQTSGGPVDAG-PEYQQDLDRELFKLKQMY 51 (77)
T ss_dssp HHHHHHHH-HHHHHHTCCSSSSSCC-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHhcccCCCCCCCC-HHHHHHHHHHHHHHHHHH
Confidence 46899996 6766543 12222222 234466677777777777
No 56
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=27.51 E-value=58 Score=18.22 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q 029864 129 SKLAKVKAQVSEVKG 143 (186)
Q Consensus 129 dkl~~i~~~l~ev~~ 143 (186)
+++++++.+|++|+.
T Consensus 32 ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 32 ERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 789999999988763
No 57
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=26.34 E-value=1.7e+02 Score=20.62 Aligned_cols=75 Identities=12% Similarity=0.243 Sum_probs=44.6
Q ss_pred CCCCcccHHHHHHHHHHHHHhhhCCCCCCCCCCCCccchhhHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHHHhHH
Q 029864 71 ESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIE 150 (186)
Q Consensus 71 ~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~y~~~~~~~dkl~~i~~~l~ev~~im~~ni~ 150 (186)
-+|.+...-..|.|-++...+... +..+|.+ ..-|+....+| .+|+=.+.+-.- +..+.-.-+.+.++
T Consensus 86 fTfD~~~L~~~L~ec~~lL~~lv~----~HLT~KS-----~~Ri~~vF~~f-~~~efL~~lf~~--~~~~~L~kI~~~Ln 153 (161)
T 3f4m_A 86 FTFEAAVLAGLLTECRDVLLELVE----HHLTPKS-----HGRIRHVFDHF-SDPGLLTALYGP--DFTQHLGKICDGLR 153 (161)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHT----TTSCHHH-----HHHHHHHHHHH-TCHHHHHHHTSG--GGHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH----hhCCcch-----HHHHHHHHHHh-CCHHHHHHHhCc--HHHHHHHHHHHHHH
Confidence 344566666666666666655543 1222222 23466666777 676544444333 56666667778889
Q ss_pred HHHHhhh
Q 029864 151 KVLDRGE 157 (186)
Q Consensus 151 ~il~Rge 157 (186)
++|++|.
T Consensus 154 klld~g~ 160 (161)
T 3f4m_A 154 KLLDEGK 160 (161)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 9999885
No 58
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=21.40 E-value=1.2e+02 Score=17.15 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 029864 129 SKLAKVKAQVSEVKGVMMEN 148 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~n 148 (186)
+.+..++.+++-+.++..+|
T Consensus 7 ~sl~~l~~ql~sla~vvlQN 26 (53)
T 1y4m_A 7 KALTTMQEQIDSLAAVVLQN 26 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78889999999998888777
No 59
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.30 E-value=1.2e+02 Score=20.55 Aligned_cols=24 Identities=0% Similarity=0.245 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 029864 129 SKLAKVKAQVSEVKGVMMENIEKV 152 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~ni~~i 152 (186)
|.++++|..|++.-..|...|.-+
T Consensus 3 DrlTQLQd~ldqla~~f~nsig~L 26 (132)
T 1ykh_B 3 DRMTQLQICLDQMTEQFCATLNYI 26 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999888744
No 60
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=20.46 E-value=2.4e+02 Score=20.43 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHHHhhHhhhhh
Q 029864 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQVSVSFRF 179 (186)
Q Consensus 129 dkl~~i~~~l~ev~~im~~ni~~il~Rge~l~~L~~ks~~L~~~s~~~~k~ 179 (186)
+.+..++.+++++ ...++.+++...+|+.+.++++.+-.+.+..+..
T Consensus 62 ~~~q~~~~~~e~l----~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~ 108 (192)
T 2p22_C 62 NPLTDFAGKIHAF----RDQFKQLEENFEDLHEQKDKVQALLENARILESK 108 (192)
T ss_dssp SCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777776 5566666788888888888888877776665443
Done!