BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029865
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P44428|FER_HAEIN 2Fe-2S ferredoxin OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=fdx PE=3 SV=2
Length = 113
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 93 DNKIELYATYGKVMN--CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESW---- 146
DN +E+ G ++ C G +C TC V + +G D LNE ++ E L K +W
Sbjct: 25 DNLLEVAHNAGVEIHHACDGSCACTTCHVIVREGFDSLNETSDQEEDMLDK---AWGLEM 81
Query: 147 --RLACQTIVGNKE 158
RL+CQ +VGN++
Sbjct: 82 DSRLSCQCVVGNED 95
>sp|A6V3A2|NQRF_PSEA7 Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas
aeruginosa (strain PA7) GN=nqrF PE=3 SV=1
Length = 407
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 82 SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK 141
+G KLL+ + +N A CGGGG+C C ++DG E TE + +
Sbjct: 51 AGGKLLQTLAANNVFLSSA-------CGGGGTCAQCKCVVVDGG---GEMLPTEESHFTR 100
Query: 142 KP--ESWRLACQTIV 154
+ E WRL+CQT V
Sbjct: 101 RQAKEGWRLSCQTPV 115
>sp|Q02PF8|NQRF_PSEAB Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=nqrF PE=3 SV=1
Length = 407
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 82 SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK 141
+G KLL+ + +N A CGGGG+C C +++G E TE + +
Sbjct: 51 AGGKLLQTLATNNVFLSSA-------CGGGGTCAQCKCVVVEGG---GEMLPTEESHFTR 100
Query: 142 KP--ESWRLACQTIV 154
+ E WRL+CQT V
Sbjct: 101 RQAKEGWRLSCQTPV 115
>sp|Q9HZL1|NQRF_PSEAE Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=nqrF PE=3 SV=1
Length = 407
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 82 SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK 141
+G KLL+ + +N A CGGGG+C C +++G E TE + +
Sbjct: 51 AGGKLLQTLAANNVFLSSA-------CGGGGTCAQCKCVVVEGG---GEMLPTEESHFTR 100
Query: 142 KP--ESWRLACQTIV 154
+ E WRL+CQT V
Sbjct: 101 RQAKEGWRLSCQTPV 115
>sp|Q255Y6|NQRF_CHLFF Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydophila felis (strain Fe/C-56) GN=nqrF PE=3
SV=1
Length = 431
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 108 CGGGGSCGTCIVEIIDGKD--LLNERTNTELRYLKKKPESWRLACQTIVGNKEN 159
CGG +C C V+I+ G D L +R R L+ + WRL+CQT V + N
Sbjct: 76 CGGKATCKQCKVKIVKGADQPLETDRATFSKRQLE---QGWRLSCQTKVQHDMN 126
>sp|O68983|CSMJ_CHLTE Chlorosome protein J OS=Chlorobium tepidum (strain ATCC 49652 / DSM
12025 / TLS) GN=csmJ PE=4 SV=1
Length = 225
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 108 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTIV 154
CGG G C +C V +++G + L+E E ++ K E RLAC+T +
Sbjct: 33 CGGNGICQSCFVYVLEGAECLSEPGEDEKAFISDKLFAEGGRLACRTTI 81
>sp|O68988|CSMI_CHLTE Chlorosome protein I OS=Chlorobium tepidum (strain ATCC 49652 / DSM
12025 / TLS) GN=csmI PE=1 SV=1
Length = 244
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 99 YATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYL--KKKPESWRLACQTIVGN 156
+A G V CGG G C C + + +G D L T+ E +L ++ R+ACQ +
Sbjct: 26 HAHVGYV--CGGHGLCQACYITVQEGADCLAPLTDVEKAFLSPRQIAAGGRIACQATIA- 82
Query: 157 KENSGKC--RIKYLKVEALCSLYRAVGY 182
KE + K R + ++ + ++ +GY
Sbjct: 83 KEGTVKVLSRPEEVRRMVFSNPFQLIGY 110
>sp|Q605A0|NQRF_METCA Na(+)-translocating NADH-quinone reductase subunit F
OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB
11132 / Bath) GN=nqrF PE=3 SV=1
Length = 407
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 108 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESW--RLACQTIV 154
CGGGG+C C V++++G E TEL ++ K+ + RL+CQ V
Sbjct: 68 CGGGGTCAQCRVQVLEGG---GEILPTELSHITKREAAQGDRLSCQVTV 113
>sp|D5ARY7|FER4_RHOCB Ferredoxin-4 OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC
16581 / SB1003) GN=fdxC PE=3 SV=1
Length = 95
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 112 GSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQ 151
G CGTC+ I++G + L+E T E+R L++ + RLACQ
Sbjct: 41 GECGTCMTHILEGSENLSEPTALEMRVLEENLGGKDDRLACQ 82
>sp|P0CY92|FER4_RHOCA Ferredoxin-4 OS=Rhodobacter capsulatus GN=fdxC PE=3 SV=1
Length = 95
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 112 GSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQ 151
G CGTC+ I++G + L+E T E+R L++ + RLACQ
Sbjct: 41 GECGTCMTHILEGSENLSEPTALEMRVLEENLGGKDDRLACQ 82
>sp|Q9PLI3|NQRF_CHLMU Probable Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydia muridarum (strain MoPn / Nigg) GN=nqrF PE=3
SV=1
Length = 431
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 78 AKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKD--LLNERTNTE 135
K + K L + +LD+ I + + CGG +C C + I D L +R+
Sbjct: 52 TKTVDSGKTLLSSLLDSGIAIPSP------CGGKAACKQCKIRITKNVDEPLETDRSTFS 105
Query: 136 LRYLKKKPESWRLACQTIVGNKEN 159
+ L+ + WRL+CQT V + N
Sbjct: 106 KQQLE---QGWRLSCQTKVQHDMN 126
>sp|Q821Q3|NQRF_CHLCV Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydophila caviae (strain GPIC) GN=nqrF PE=3 SV=1
Length = 431
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 66 RAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125
+ DD S K + + L + +LD+ I + + CGG +C C V+I+
Sbjct: 44 KINDDDSL----TKTVDSGRTLLSSLLDSGIPIPSP------CGGKATCKQCKVKIVKNA 93
Query: 126 D--LLNERTNTELRYLKKKPESWRLACQTIV 154
D L +R + L+ + WRL+CQT V
Sbjct: 94 DQPLETDRATFSKQQLE---QGWRLSCQTKV 121
>sp|Q3KKV3|NQRF_CHLTA Na(+)-translocating NADH-quinone reductase subunit F OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=nqrF PE=3 SV=1
Length = 431
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 78 AKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKD--LLNERTNTE 135
K + K L + +LD+ I + + CGG +C C V I D L +R+
Sbjct: 52 TKTVDSGKTLLSSLLDSGIAIPSP------CGGKAACKQCKVRITKNADEPLETDRSTFS 105
Query: 136 LRYLKKKPESWRLACQTIVGN 156
+ L+ + WRL+CQT V +
Sbjct: 106 KQQLE---QGWRLSCQTKVQH 123
>sp|O84745|NQRF_CHLTR Probable Na(+)-translocating NADH-quinone reductase subunit F
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=nqrF PE=3
SV=1
Length = 431
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 78 AKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKD--LLNERTNTE 135
K + K L + +LD+ I + + CGG +C C V I D L +R+
Sbjct: 52 TKTVDSGKTLLSSLLDSGIAIPSP------CGGKAACKQCKVRITKNADEPLETDRSTFS 105
Query: 136 LRYLKKKPESWRLACQTIVGN 156
+ L+ + WRL+CQT V +
Sbjct: 106 KQQLE---QGWRLSCQTKVQH 123
>sp|P59799|FER5_AQUAE 2Fe-2S ferredoxin-5 OS=Aquifex aeolicus (strain VF5) GN=fdx5 PE=1
SV=2
Length = 96
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 79 KAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRY 138
+ I E +++ I+ N IE+ + CGG G C +C V II G + L E
Sbjct: 14 EGIENETIMQ-ILYRNGIEIDSA------CGGHGQCTSCKVLIISGSENLYPAEFEEKDT 66
Query: 139 LKKK---PESWRLACQTIVGNK 157
L++ PE+ RL+CQ + K
Sbjct: 67 LEENGMDPETERLSCQAKLNGK 88
>sp|Q2MGH6|GH101_STRPN Endo-alpha-N-acetylgalactosaminidase OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=SP_0368 PE=1
SV=1
Length = 1767
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 44 NSTEPSSPEPEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLL 87
++T+P +P EKPE +L +A G Y E A+ + E++L
Sbjct: 1692 SATKPDAPTVEKPEFKLRSLASEQGKTPDYKQEIARPETPEQIL 1735
>sp|Q8DR60|GH101_STRR6 Endo-alpha-N-acetylgalactosaminidase OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=spr0328 PE=1 SV=1
Length = 1767
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 44 NSTEPSSPEPEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLL 87
++T+P +P EKPE +L +A G Y E A+ + E++L
Sbjct: 1692 SATKPDAPTVEKPEFKLSSVASDQGKTPDYKQEIARPETPEQIL 1735
>sp|Q99KW3|TARA_MOUSE TRIO and F-actin-binding protein OS=Mus musculus GN=Triobp PE=1 SV=3
Length = 2014
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 19/99 (19%)
Query: 83 GEKLLRN-----IMLDNKIELYATYGKVMNCGGGGSCG------TCIVEIIDGKDLLNER 131
G++LLR+ L +I+ ++ + + G G SCG +C +E+ LL +
Sbjct: 1887 GQELLRHNQELHSHLSEEIDRLRSF--IASQGTGNSCGRSNERSSCELEV-----LLRVK 1939
Query: 132 TNTELRYLKKKPESWRLACQTIVGNKENSGKCRIKYLKV 170
N EL+YLKK+ + R Q I +K +GK + Y+++
Sbjct: 1940 EN-ELQYLKKEVQCLRDELQVIQKDKRFTGKYQDVYVEL 1977
>sp|P21149|FER_TRIVA Ferredoxin OS=Trichomonas vaginalis PE=1 SV=1
Length = 100
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 107 NCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSG 161
C G +CG CI + + GK + E +L+ +P + RLAC I + EN G
Sbjct: 45 TCQGNKACGKCICKHVSGK---VAAEDDEKEFLEDQPANARLAC-AITLSGENDG 95
>sp|A0M791|ATPB_GRAFK ATP synthase subunit beta OS=Gramella forsetii (strain KT0803)
GN=atpD PE=3 SV=1
Length = 503
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 65 PRAGDDGSYPVERAK------AISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCI 118
P+AG+DG P+ R ++S E L I + + IE Y+ GK+ GG G T +
Sbjct: 108 PKAGEDG-LPIHRQAPKFEDLSVSTEVLFTGIKVIDLIEPYSKGGKIGLFGGAGVGKTVL 166
Query: 119 VE 120
++
Sbjct: 167 IQ 168
>sp|Q9LCJ4|NQRF_PSEHA Na(+)-translocating NADH-quinone reductase subunit F (Fragment)
OS=Pseudoalteromonas haloplanktis GN=nqrF PE=3 SV=1
Length = 303
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 111 GGSCGTCIVEIID-GKDLLNERTNTELRYLKKKP--ESWRLACQTIVGN 156
GGSCG C V I + G D+L TEL ++ K E RLACQ V N
Sbjct: 1 GGSCGQCRVHIKEGGGDIL----PTELDHISKGEAREGCRLACQVNVKN 45
>sp|Q9LCI7|NQRF_SHEPU Na(+)-translocating NADH-quinone reductase subunit F (Fragment)
OS=Shewanella putrefaciens GN=nqrF PE=3 SV=1
Length = 301
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 111 GGSCGTCIVEIID-GKDLLNERTNTELRYLKKKP--ESWRLACQTIV 154
GGSCG C V+I G D+L TE+ ++ KK E RLACQ V
Sbjct: 1 GGSCGQCRVKIKSGGGDIL----PTEMGHITKKEAKEGCRLACQVAV 43
>sp|A6VW13|NQRF_MARMS Na(+)-translocating NADH-quinone reductase subunit F OS=Marinomonas
sp. (strain MWYL1) GN=nqrF PE=3 SV=1
Length = 408
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 108 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKP--ESWRLACQTIV 154
CGGGG+C C ++ G + +TE + ++ E +RL+CQ V
Sbjct: 70 CGGGGTCAQCKCKVTSGGGSM---LSTEQSHFTRRDEKEGYRLSCQVSV 115
>sp|Q7V5M4|IF2_PROMM Translation initiation factor IF-2 OS=Prochlorococcus marinus
(strain MIT 9313) GN=infB PE=3 SV=1
Length = 1125
Score = 30.4 bits (67), Expect = 6.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 42 AVNSTEPSSPEPEKPEIELEFIAPRAGDDGSYPVERAKAIS 82
A NS PS EPEK + ++ AP A D + P+ +A + S
Sbjct: 58 AANSAPPSKSEPEKTILSVKKAAPTAIKDVAPPIRKATSSS 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,501,206
Number of Sequences: 539616
Number of extensions: 3239571
Number of successful extensions: 5963
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 5911
Number of HSP's gapped (non-prelim): 81
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)