Query 029865
Match_columns 186
No_of_seqs 157 out of 1266
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3309 Ferredoxin [Energy pro 99.9 7.6E-22 1.6E-26 158.5 9.3 132 25-173 12-147 (159)
2 PLN02593 adrenodoxin-like ferr 99.9 3.2E-21 7E-26 148.8 10.7 102 58-175 1-107 (117)
3 PTZ00490 Ferredoxin superfamil 99.8 2E-20 4.3E-25 149.4 11.7 102 55-172 33-139 (143)
4 TIGR02007 fdx_isc ferredoxin, 99.8 1.4E-18 3.1E-23 132.3 10.2 86 76-173 16-104 (110)
5 COG0633 Fdx Ferredoxin [Energy 99.7 2.2E-17 4.8E-22 124.5 9.5 71 77-155 16-88 (102)
6 CHL00134 petF ferredoxin; Vali 99.6 7.7E-16 1.7E-20 115.4 8.8 77 76-171 17-95 (99)
7 TIGR02008 fdx_plant ferredoxin 99.6 1E-15 2.3E-20 113.9 8.8 77 76-171 15-93 (97)
8 PLN03136 Ferredoxin; Provision 99.6 1.8E-15 4E-20 121.5 9.1 92 54-171 51-144 (148)
9 PRK10713 2Fe-2S ferredoxin Yfa 99.6 4.8E-15 1E-19 107.8 9.5 70 77-165 12-82 (84)
10 PTZ00038 ferredoxin; Provision 99.6 6.7E-15 1.4E-19 122.6 9.1 78 76-172 107-186 (191)
11 TIGR01941 nqrF NADH:ubiquinone 99.6 1E-14 2.2E-19 131.9 10.3 91 55-169 29-121 (405)
12 PRK05464 Na(+)-translocating N 99.6 2.2E-14 4.8E-19 129.9 10.6 92 54-169 32-125 (409)
13 cd00207 fer2 2Fe-2S iron-sulfu 99.5 1.1E-13 2.3E-18 98.1 7.4 72 76-165 10-83 (84)
14 PRK11872 antC anthranilate dio 99.4 2.4E-13 5.2E-18 120.3 8.6 89 57-170 4-94 (340)
15 PRK07609 CDP-6-deoxy-delta-3,4 99.4 3.1E-13 6.6E-18 118.7 8.2 78 76-170 12-91 (339)
16 COG2871 NqrF Na+-transporting 99.4 2.4E-13 5.2E-18 120.2 7.1 80 76-171 47-128 (410)
17 COG3894 Uncharacterized metal- 99.4 5E-13 1.1E-17 124.5 7.5 78 81-174 15-92 (614)
18 PRK05713 hypothetical protein; 99.4 4.8E-13 1E-17 116.9 6.9 73 76-166 9-83 (312)
19 PF00111 Fer2: 2Fe-2S iron-sul 99.4 3.1E-13 6.8E-18 95.3 4.4 69 76-155 8-78 (78)
20 PRK10684 HCP oxidoreductase, N 99.4 1.1E-12 2.4E-17 115.4 8.3 72 76-165 258-331 (332)
21 TIGR02160 PA_CoA_Oxy5 phenylac 99.3 5.3E-12 1.1E-16 111.4 8.5 65 78-155 277-343 (352)
22 PF13085 Fer2_3: 2Fe-2S iron-s 98.9 2.3E-09 5.1E-14 82.4 4.8 91 57-171 1-95 (110)
23 PLN00129 succinate dehydrogena 98.8 1E-08 2.2E-13 89.9 6.3 90 58-171 46-136 (276)
24 PRK13552 frdB fumarate reducta 98.7 3.6E-08 7.7E-13 84.6 5.9 91 57-171 6-97 (239)
25 PRK07569 bidirectional hydroge 98.6 1.3E-07 2.8E-12 80.4 6.5 64 55-155 1-69 (234)
26 PRK06259 succinate dehydrogena 98.5 2.1E-07 4.5E-12 86.1 7.5 83 58-169 6-88 (486)
27 COG0479 FrdB Succinate dehydro 98.5 1.2E-07 2.7E-12 81.5 5.5 90 57-171 4-93 (234)
28 PRK08640 sdhB succinate dehydr 98.5 1.2E-07 2.6E-12 81.8 5.4 88 57-170 7-101 (249)
29 PRK12385 fumarate reductase ir 98.5 7.8E-08 1.7E-12 82.6 4.1 88 58-170 9-96 (244)
30 PRK12575 succinate dehydrogena 98.5 1.9E-07 4E-12 80.1 5.8 88 57-170 6-94 (235)
31 PF13510 Fer2_4: 2Fe-2S iron-s 98.4 2.3E-07 5E-12 67.3 4.4 66 57-155 3-72 (82)
32 PRK12577 succinate dehydrogena 98.4 7.6E-07 1.7E-11 79.4 8.0 87 58-170 5-101 (329)
33 PRK12576 succinate dehydrogena 98.4 1.4E-06 3.1E-11 76.3 8.4 88 57-170 10-100 (279)
34 PRK05950 sdhB succinate dehydr 98.3 1.7E-06 3.7E-11 73.4 7.1 66 57-125 1-67 (232)
35 PRK12386 fumarate reductase ir 98.3 2.2E-06 4.7E-11 74.3 6.7 75 71-170 17-93 (251)
36 TIGR00384 dhsB succinate dehyd 98.2 9.6E-07 2.1E-11 74.3 3.7 73 72-170 13-87 (220)
37 PRK07570 succinate dehydrogena 98.1 2.5E-06 5.4E-11 73.9 4.6 94 57-169 4-103 (250)
38 PRK08166 NADH dehydrogenase su 98.0 2E-05 4.4E-10 77.7 7.8 59 76-155 9-72 (847)
39 PRK12814 putative NADPH-depend 97.5 0.00023 5E-09 68.6 7.1 74 55-170 1-79 (652)
40 PTZ00305 NADH:ubiquinone oxido 97.3 0.00073 1.6E-08 60.1 6.6 70 53-155 64-135 (297)
41 PRK08493 NADH dehydrogenase su 97.2 0.0012 2.6E-08 65.7 7.6 65 76-168 9-73 (819)
42 PRK07860 NADH dehydrogenase su 97.0 0.0019 4.2E-08 63.8 7.4 62 76-168 12-78 (797)
43 PRK11433 aldehyde oxidoreducta 97.0 0.005 1.1E-07 52.6 8.6 43 76-125 61-103 (217)
44 TIGR01973 NuoG NADH-quinone ox 96.9 0.0018 3.8E-08 61.8 6.3 63 76-168 6-73 (603)
45 PRK09130 NADH dehydrogenase su 96.7 0.0037 8.1E-08 61.0 6.7 60 76-164 9-73 (687)
46 PRK09129 NADH dehydrogenase su 96.3 0.0091 2E-07 58.6 6.6 61 76-167 9-74 (776)
47 COG1034 NuoG NADH dehydrogenas 96.0 0.015 3.2E-07 57.2 6.2 62 76-163 9-71 (693)
48 PRK09908 xanthine dehydrogenas 95.9 0.015 3.3E-07 47.5 5.0 42 76-125 18-59 (159)
49 TIGR03193 4hydroxCoAred 4-hydr 95.3 0.028 6.1E-07 45.5 4.5 42 76-125 11-53 (148)
50 TIGR03198 pucE xanthine dehydr 95.2 0.038 8.3E-07 44.7 4.9 40 76-122 13-53 (151)
51 KOG3049 Succinate dehydrogenas 95.1 0.11 2.4E-06 45.0 7.8 76 57-155 48-125 (288)
52 COG3383 Uncharacterized anaero 93.7 0.15 3.3E-06 50.9 6.2 42 76-125 13-59 (978)
53 COG2080 CoxS Aerobic-type carb 93.3 0.2 4.4E-06 40.9 5.4 43 76-125 13-55 (156)
54 PRK09800 putative hypoxanthine 92.6 0.17 3.6E-06 51.6 4.9 43 76-125 12-54 (956)
55 TIGR01372 soxA sarcosine oxida 91.8 0.57 1.2E-05 47.6 7.5 73 54-155 9-86 (985)
56 cd06218 DHOD_e_trans FAD/NAD b 91.1 0.33 7.2E-06 40.9 4.4 34 89-123 197-230 (246)
57 cd06219 DHOD_e_trans_like1 FAD 89.9 0.29 6.3E-06 41.3 3.0 32 89-121 197-228 (248)
58 PRK06222 ferredoxin-NADP(+) re 89.8 0.31 6.8E-06 42.1 3.2 32 89-121 198-229 (281)
59 TIGR02963 xanthine_xdhA xanthi 89.4 0.39 8.4E-06 45.1 3.7 40 76-122 10-51 (467)
60 cd06221 sulfite_reductase_like 89.3 0.23 4.9E-06 42.1 1.9 31 89-120 207-240 (253)
61 TIGR03313 Se_sel_red_Mo probab 88.8 0.59 1.3E-05 47.6 4.7 42 76-125 8-50 (951)
62 PRK08345 cytochrome-c3 hydroge 88.7 0.24 5.2E-06 43.0 1.7 38 85-124 226-266 (289)
63 PRK00054 dihydroorotate dehydr 88.4 0.32 6.9E-06 41.0 2.2 34 89-123 198-231 (250)
64 PRK05802 hypothetical protein; 87.8 0.62 1.3E-05 41.4 3.7 33 89-122 271-305 (320)
65 cd06220 DHOD_e_trans_like2 FAD 87.0 0.46 1E-05 39.5 2.3 33 89-122 184-216 (233)
66 TIGR02969 mam_aldehyde_ox alde 86.6 0.8 1.7E-05 48.3 4.3 39 77-122 14-53 (1330)
67 TIGR03311 Se_dep_Molyb_1 selen 85.8 0.81 1.7E-05 46.0 3.7 41 77-125 9-50 (848)
68 PRK08221 anaerobic sulfite red 84.6 0.47 1E-05 40.6 1.3 31 89-120 209-242 (263)
69 TIGR02911 sulfite_red_B sulfit 84.3 0.55 1.2E-05 40.1 1.6 31 89-120 207-240 (261)
70 KOG2282 NADH-ubiquinone oxidor 83.8 1.7 3.8E-05 42.0 4.8 46 76-124 40-86 (708)
71 cd06192 DHOD_e_trans_like FAD/ 81.1 1.5 3.2E-05 36.6 2.9 33 89-122 195-229 (243)
72 PLN00192 aldehyde oxidase 78.7 2.5 5.4E-05 44.7 4.3 40 77-122 16-56 (1344)
73 PRK12778 putative bifunctional 77.5 2.1 4.6E-05 42.1 3.1 32 89-121 198-229 (752)
74 PRK12775 putative trifunctiona 69.5 4 8.8E-05 41.9 3.0 32 89-121 198-229 (1006)
75 PRK12779 putative bifunctional 69.0 4.8 0.0001 41.1 3.4 33 89-122 864-896 (944)
76 PF10418 DHODB_Fe-S_bind: Iron 68.0 2.8 6.2E-05 26.6 1.1 20 105-125 3-22 (40)
77 COG4630 XdhA Xanthine dehydrog 58.1 21 0.00045 33.7 5.1 39 76-121 19-58 (493)
78 PLN02906 xanthine dehydrogenas 57.5 9.6 0.00021 40.4 3.2 33 83-122 1-33 (1319)
79 PRK01777 hypothetical protein; 43.4 59 0.0013 24.2 4.7 38 57-100 5-42 (95)
80 PF03658 Ub-RnfH: RnfH family 41.7 26 0.00057 25.7 2.6 36 57-98 2-37 (84)
81 KOG0430 Xanthine dehydrogenase 39.2 28 0.00062 36.7 3.2 41 77-123 14-54 (1257)
82 COG3086 RseC Positive regulato 30.9 42 0.00092 27.4 2.4 56 107-174 19-75 (150)
83 PRK06567 putative bifunctional 29.2 23 0.00049 36.9 0.7 40 94-152 960-999 (1028)
84 PF09791 Oxidored-like: Oxidor 29.1 36 0.00077 22.5 1.4 27 94-121 4-30 (48)
85 cd08815 Death_TNFRSF25_DR3 Dea 26.1 50 0.0011 24.1 1.8 18 165-182 6-23 (77)
86 COG1018 Hmp Flavodoxin reducta 24.3 67 0.0015 27.9 2.6 37 54-91 221-265 (266)
87 KOG1069 Exosomal 3'-5' exoribo 23.7 60 0.0013 28.0 2.1 36 90-136 117-152 (217)
88 PF04225 OapA: Opacity-associa 21.9 85 0.0019 22.6 2.4 23 76-99 3-25 (85)
No 1
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.86 E-value=7.6e-22 Score=158.46 Aligned_cols=132 Identities=21% Similarity=0.285 Sum_probs=103.9
Q ss_pred cccccccCCCccceeEEeecCCCCCCCCCCCCcEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCc
Q 029865 25 SFKSKLSSPRRPKFVSFAVNSTEPSSPEPEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGK 104 (186)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~ 104 (186)
.+|-..+.+.+.|..+.+.....+. .+.+...|+|+|+++++. ...+++..|+||| +++.++||+++++
T Consensus 12 ~~~~a~~~~~~~f~~~~t~~~~~~~-~~~~~e~i~Itfv~~dG~------~~~i~g~vGdtlL-d~ah~n~idleGA--- 80 (159)
T KOG3309|consen 12 ISRLAPFTRNHIFRTSSTSEFSPSK-GPRKVEDIKITFVDPDGE------EIKIKGKVGDTLL-DAAHENNLDLEGA--- 80 (159)
T ss_pred hhhccccccceeeccCccccccccc-CCCCCceEEEEEECCCCC------EEEeeeecchHHH-HHHHHcCCCcccc---
Confidence 3444555666666654322211111 233445699999998762 3688999999999 9999999999985
Q ss_pred ccCCCCceeecCCEEEEecCc-ccCCCCChHHHhccCCC---CCCeEEeeEeEeeeccCCCceEEEEcchHhH
Q 029865 105 VMNCGGGGSCGTCIVEIIDGK-DLLNERTNTELRYLKKK---PESWRLACQTIVGNKENSGKCRIKYLKVEAL 173 (186)
Q Consensus 105 ~~~CgG~G~CGTC~V~V~~G~-~~l~~~t~~E~~~L~~~---~~g~RLACQ~~v~~~~~~gdv~V~~lP~~~~ 173 (186)
|+|..+|+||||+|.+.. +.|++|+++|+++|+.+ .+++||+||+..+ ++++|.. +.+|+...
T Consensus 81 ---CEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~tSRLGCQI~l~-keldG~~--v~vP~atr 147 (159)
T KOG3309|consen 81 ---CEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTETSRLGCQIVLT-KELDGMR--VAVPEATR 147 (159)
T ss_pred ---ccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhccccccccceEEEec-cccCCcE--EECccccc
Confidence 999999999999999887 68899999999999986 7899999999999 8999985 58997653
No 2
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.86 E-value=3.2e-21 Score=148.81 Aligned_cols=102 Identities=33% Similarity=0.444 Sum_probs=83.5
Q ss_pred EEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCc--ccCCCCChHH
Q 029865 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK--DLLNERTNTE 135 (186)
Q Consensus 58 V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~--~~l~~~t~~E 135 (186)
|+|+|+++++ ..+++++..|+||| ++++++|+++++ .|+|.|.||||+|+|++++ ..++|+++.|
T Consensus 1 ~~V~fi~~~G------~~~~v~~~~G~tLl-~a~~~~gi~i~~------~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E 67 (117)
T PLN02593 1 ISVTFVDKDG------EERTVKAPVGMSLL-EAAHENDIELEG------ACEGSLACSTCHVIVMDEKVYNKLPEPTDEE 67 (117)
T ss_pred CEEEEEcCCC------CEEEEEECCCCcHH-HHHHHcCCCCCc------cCCCcceeCCCEEEEecCccccCCCCCChHH
Confidence 5788987754 13688999999999 999999999987 5999999999999996433 6789999999
Q ss_pred HhccCC---CCCCeEEeeEeEeeeccCCCceEEEEcchHhHHH
Q 029865 136 LRYLKK---KPESWRLACQTIVGNKENSGKCRIKYLKVEALCS 175 (186)
Q Consensus 136 ~~~L~~---~~~g~RLACQ~~v~~~~~~gdv~V~~lP~~~~~~ 175 (186)
.++|+. ..++||||||+.+. +++++. + +.+|+...-+
T Consensus 68 ~~~L~~~~~~~~~sRLaCQ~~v~-~~~~~~-~-v~ip~~~~~~ 107 (117)
T PLN02593 68 NDMLDLAFGLTETSRLGCQVIAK-PELDGM-R-LALPAATRNF 107 (117)
T ss_pred HHHHhcccCCCCCeEecceeEee-cCCCCE-E-EEcCchhccc
Confidence 999984 27899999999998 555444 4 5899887544
No 3
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.84 E-value=2e-20 Score=149.44 Aligned_cols=102 Identities=23% Similarity=0.291 Sum_probs=86.2
Q ss_pred CCcEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHC-CCCccccCCcccCCCCceeecCCEEEEecCc-ccCCCCC
Q 029865 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEIIDGK-DLLNERT 132 (186)
Q Consensus 55 ~~~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~-GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~-~~l~~~t 132 (186)
..+|+|+|.+.++ ..++++++.|+||| +++.++ ++++.+ .|+|.|.||||+|+|.+|+ ..+++++
T Consensus 33 ~g~v~I~~~~~dG------~~~~v~~~~G~sLL-eal~~~~~i~i~~------~CGG~g~CgtC~V~V~~g~~~~l~~~~ 99 (143)
T PTZ00490 33 PGKVKVCVKKRDG------THCDVEVPVGMSLM-HALRDVAKLDVEG------TCNGCMQCATCHVYLSAASFKKLGGPS 99 (143)
T ss_pred CCcEEEEEEcCCC------CEEEEEECCCccHH-HHHHHcCCCCccc------cCCCCCEeCCCEEEECCCccccCCCCC
Confidence 4589999998754 23689999999999 999995 688988 5999999999999999987 6789999
Q ss_pred hHHHhccCCC---CCCeEEeeEeEeeeccCCCceEEEEcchHh
Q 029865 133 NTELRYLKKK---PESWRLACQTIVGNKENSGKCRIKYLKVEA 172 (186)
Q Consensus 133 ~~E~~~L~~~---~~g~RLACQ~~v~~~~~~gdv~V~~lP~~~ 172 (186)
+.|.++|+.+ .++||||||+.+. ++++|. + +.+|+..
T Consensus 100 ~~E~~~L~~~~~~~~gsRLaCQi~v~-~~ldgl-~-V~vp~~~ 139 (143)
T PTZ00490 100 EEEEDVLAKALDVKETSRLACQVDLT-PEMDGL-E-VELPSYV 139 (143)
T ss_pred hHHHHHhhccccCCCCcEEeeeEEEe-cCCCCE-E-EEeCccc
Confidence 9999999864 7899999999998 666664 4 4788664
No 4
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.78 E-value=1.4e-18 Score=132.28 Aligned_cols=86 Identities=29% Similarity=0.454 Sum_probs=74.8
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCC---CCCeEEeeEe
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK---PESWRLACQT 152 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~---~~g~RLACQ~ 152 (186)
+++++..|+||| ++++++|+++++ .|+|.|.||||+|+|.+|...++++++.|.+.|+.. .++|||+||+
T Consensus 16 ~~~~~~~g~tLL-~a~~~~gi~i~~------~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~ 88 (110)
T TIGR02007 16 AVVEAKPGETIL-DVALDNGIEIEH------ACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQA 88 (110)
T ss_pred eEEEECCCChHH-HHHHHcCCCccc------cCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeE
Confidence 588999999999 999999999998 599999999999999999888888888999988753 7899999999
Q ss_pred EeeeccCCCceEEEEcchHhH
Q 029865 153 IVGNKENSGKCRIKYLKVEAL 173 (186)
Q Consensus 153 ~v~~~~~~gdv~V~~lP~~~~ 173 (186)
.+. +++++ +.+|..+.
T Consensus 89 ~~~----~~dl~-v~~~~~~~ 104 (110)
T TIGR02007 89 VVA----DEDLV-VEIPKYTI 104 (110)
T ss_pred EEc----CCCEE-EEECchhh
Confidence 987 24776 57776554
No 5
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.73 E-value=2.2e-17 Score=124.50 Aligned_cols=71 Identities=32% Similarity=0.544 Sum_probs=62.9
Q ss_pred EEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCC--CCCeEEeeEeEe
Q 029865 77 RAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTIV 154 (186)
Q Consensus 77 ~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLACQ~~v 154 (186)
...+..|+||| ++++++||++++ +|+| |.||||+|+|++|.+.++++++.|.++|+.. ..++||+||+++
T Consensus 16 ~~~~~~g~tiL-e~a~~~gi~i~~------~C~~-g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~ 87 (102)
T COG0633 16 TEAVNEGETLL-EAAERNGIPIEY------ACRG-GACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRV 87 (102)
T ss_pred EEeccCCcHHH-HHHHHCCCccee------cCCC-CccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEE
Confidence 45566699999 999999999998 6995 5999999999999777889999999999943 677999999999
Q ss_pred e
Q 029865 155 G 155 (186)
Q Consensus 155 ~ 155 (186)
.
T Consensus 88 ~ 88 (102)
T COG0633 88 K 88 (102)
T ss_pred C
Confidence 8
No 6
>CHL00134 petF ferredoxin; Validated
Probab=99.64 E-value=7.7e-16 Score=115.35 Aligned_cols=77 Identities=19% Similarity=0.395 Sum_probs=63.3
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCC--CCCCeEEeeEeE
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTI 153 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~ 153 (186)
+.+++++|+||| ++|+++||++++ .|+ .|.||+|+++|++|..... +...|+. ..++|+|+||++
T Consensus 17 ~~~~~~~~~tLL-~a~~~~Gi~i~~------~C~-~G~Cg~C~v~v~~G~v~~~-----~~~~l~~~e~~~g~~L~C~~~ 83 (99)
T CHL00134 17 VTIDCPDDVYIL-DAAEEQGIDLPY------SCR-AGACSTCAGKVTEGTVDQS-----DQSFLDDDQLEAGFVLTCVAY 83 (99)
T ss_pred EEEEECCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCEEEEEeCccccC-----cccCCCHHHHhCCeEEEeeCE
Confidence 578999999999 999999999998 599 9999999999999986432 1123554 367999999999
Q ss_pred eeeccCCCceEEEEcchH
Q 029865 154 VGNKENSGKCRIKYLKVE 171 (186)
Q Consensus 154 v~~~~~~gdv~V~~lP~~ 171 (186)
+. +|++| .+|..
T Consensus 84 ~~-----~d~~i-~~~~~ 95 (99)
T CHL00134 84 PT-----SDCTI-LTHQE 95 (99)
T ss_pred EC-----CCeEE-Eeccc
Confidence 98 89874 66654
No 7
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.64 E-value=1e-15 Score=113.94 Aligned_cols=77 Identities=21% Similarity=0.417 Sum_probs=62.6
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCC--CCCCeEEeeEeE
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTI 153 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~ 153 (186)
.++.+.+|+||| ++++++||++++ .|+ +|.||+|+++|++|...+.. ...|++ ..++|+|+||+.
T Consensus 15 ~~~~~~~g~tLL-da~~~~Gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~~-----~~~l~~~~~~~g~~LaC~~~ 81 (97)
T TIGR02008 15 ETIECPDDQYIL-DAAEEAGIDLPY------SCR-AGACSTCAGKVEEGTVDQSD-----QSFLDDDQMEAGYVLTCVAY 81 (97)
T ss_pred EEEEECCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCceEEEeCcEecCc-----cCCCCHHHHhCCeEEEeeCE
Confidence 578899999999 999999999998 599 89999999999999864321 123554 368999999999
Q ss_pred eeeccCCCceEEEEcchH
Q 029865 154 VGNKENSGKCRIKYLKVE 171 (186)
Q Consensus 154 v~~~~~~gdv~V~~lP~~ 171 (186)
+. +|++| .+|..
T Consensus 82 ~~-----~di~v-~~~~~ 93 (97)
T TIGR02008 82 PT-----SDCTI-ETHKE 93 (97)
T ss_pred EC-----CCeEE-Eeccc
Confidence 98 88874 55543
No 8
>PLN03136 Ferredoxin; Provisional
Probab=99.62 E-value=1.8e-15 Score=121.52 Aligned_cols=92 Identities=20% Similarity=0.391 Sum_probs=72.8
Q ss_pred CCCcEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCCh
Q 029865 54 EKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTN 133 (186)
Q Consensus 54 ~~~~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~ 133 (186)
-|..++|+|..+.+ .+++++++|++|| |+++++||++++ .|+ .|.||+|+++|++|.+...
T Consensus 51 ~m~~~~V~l~~~~~-------~~~~~~~~g~tIL-dAa~~~Gi~lp~------sCr-~G~CGtC~~~l~~G~V~~~---- 111 (148)
T PLN03136 51 AMATYKVKFITPEG-------EQEVECEEDVYVL-DAAEEAGIDLPY------SCR-AGSCSSCAGKVVSGSIDQS---- 111 (148)
T ss_pred eeeeEEEEEecCCC-------cEEEEeCCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCEEEEecCcCccC----
Confidence 45667788865432 2588999999999 999999999998 599 9999999999999996432
Q ss_pred HHHhccCCC--CCCeEEeeEeEeeeccCCCceEEEEcchH
Q 029865 134 TELRYLKKK--PESWRLACQTIVGNKENSGKCRIKYLKVE 171 (186)
Q Consensus 134 ~E~~~L~~~--~~g~RLACQ~~v~~~~~~gdv~V~~lP~~ 171 (186)
+...|++. ++||+|+||+++. +|++| .+|.+
T Consensus 112 -~~~~L~~~e~~~G~~LaC~a~p~-----sD~~I-e~~~e 144 (148)
T PLN03136 112 -DQSFLDDEQISEGYVLTCVAYPT-----SDVVI-ETHKE 144 (148)
T ss_pred -cccCCCHHHhcCCEEEEeEeEEC-----CCcEE-ecCCh
Confidence 23346653 7899999999998 78875 56544
No 9
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.61 E-value=4.8e-15 Score=107.84 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=56.8
Q ss_pred EEEecC-CchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCCCCCeEEeeEeEee
Q 029865 77 RAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVG 155 (186)
Q Consensus 77 ~v~v~~-G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~ 155 (186)
.+.+.+ |+||| ++++++|+++++ +|+ .|.||+|++++++|++...... ....+++++|+||+++.
T Consensus 12 ~~~~~~~~~tlL-~a~~~~gi~~p~------~Cr-~G~Cg~C~~~~~sG~v~~~~~~------~~~~~~g~~L~C~~~p~ 77 (84)
T PRK10713 12 QLLCQDEHPSLL-AALESHNVAVEY------QCR-EGYCGSCRTRLVAGQVDWIAEP------LAFIQPGEILPCCCRAK 77 (84)
T ss_pred EEEecCCCCcHH-HHHHHcCCCCCC------CCC-CeECCCCEeEEEeCeEecCCCc------cchhhCCEEEEeeCEEC
Confidence 677775 59999 999999999998 699 9999999999999996432211 12345789999999998
Q ss_pred eccCCCceEE
Q 029865 156 NKENSGKCRI 165 (186)
Q Consensus 156 ~~~~~gdv~V 165 (186)
+|++|
T Consensus 78 -----sd~~i 82 (84)
T PRK10713 78 -----GDIEI 82 (84)
T ss_pred -----CCEEE
Confidence 78765
No 10
>PTZ00038 ferredoxin; Provisional
Probab=99.58 E-value=6.7e-15 Score=122.64 Aligned_cols=78 Identities=23% Similarity=0.442 Sum_probs=64.9
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCC--CCCeEEeeEeE
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTI 153 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLACQ~~ 153 (186)
+++++++|+||| ++++++||++++ .|+ .|.||+|+++|++|++.. .|...|++. ++||+|+||++
T Consensus 107 ~~~~v~~geTIL-dAae~aGI~lp~------sCr-~G~CGtCkvrV~~GeV~~-----~e~~~Ls~ee~~~G~~LaCqa~ 173 (191)
T PTZ00038 107 KVIECDEDEYIL-DAAERQGVELPY------SCR-GGSCSTCAAKLLEGEVDN-----EDQSYLDDEQLKKGYCLLCTCY 173 (191)
T ss_pred EEEEeCCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCEeEEeeccccc-----CccccCCHHHhcCCEEEEeeCE
Confidence 588999999999 999999999998 599 699999999999998532 233456653 78999999999
Q ss_pred eeeccCCCceEEEEcchHh
Q 029865 154 VGNKENSGKCRIKYLKVEA 172 (186)
Q Consensus 154 v~~~~~~gdv~V~~lP~~~ 172 (186)
+. +|++ +.+|.++
T Consensus 174 p~-----sDi~-Ie~p~e~ 186 (191)
T PTZ00038 174 PK-----SDCT-IETHKED 186 (191)
T ss_pred EC-----CCeE-EecCChH
Confidence 98 8887 4677655
No 11
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.57 E-value=1e-14 Score=131.85 Aligned_cols=91 Identities=33% Similarity=0.625 Sum_probs=71.9
Q ss_pred CCcEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChH
Q 029865 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNT 134 (186)
Q Consensus 55 ~~~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~ 134 (186)
+.+|+|++.+.. ..++++.+|+||| ++++++|+++++ .|+|.|.||+|+|+|.+|...+ +..
T Consensus 29 ~~~v~v~~~~~~--------~~~~~~~~g~tlL-~a~~~~gi~i~~------~C~g~G~Cg~C~v~v~~G~~~~---~~~ 90 (405)
T TIGR01941 29 SGDITIGINDDE--------EKSITVPAGGKLL-NTLASNGIFISS------ACGGGGTCGQCRVRVVEGGGEI---LPT 90 (405)
T ss_pred cccEEEEEcCCC--------ceEEEECCCChHH-HHHHHcCCCCcc------cCCCccEeCCCEEEEccCCcCC---Chh
Confidence 455776653321 1578999999999 999999999998 5998899999999999998543 345
Q ss_pred HHhccCCC--CCCeEEeeEeEeeeccCCCceEEEEcc
Q 029865 135 ELRYLKKK--PESWRLACQTIVGNKENSGKCRIKYLK 169 (186)
Q Consensus 135 E~~~L~~~--~~g~RLACQ~~v~~~~~~gdv~V~~lP 169 (186)
|...|+.. .+++||+||+.+. +|++| .+|
T Consensus 91 ~~~~L~~~~~~~g~rLaCq~~~~-----~d~~i-~~~ 121 (405)
T TIGR01941 91 ELSHFSKREAKEGWRLSCQVKVK-----QDMSI-EIP 121 (405)
T ss_pred hhhhcCHhHhcCCcEEEeeCEEC-----CCEEE-EEC
Confidence 66777763 7899999999998 77774 555
No 12
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.55 E-value=2.2e-14 Score=129.87 Aligned_cols=92 Identities=33% Similarity=0.603 Sum_probs=72.9
Q ss_pred CCCcEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCCh
Q 029865 54 EKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTN 133 (186)
Q Consensus 54 ~~~~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~ 133 (186)
+..+++|++.+... .++++.+|+||| ++++++|+++++ .|+|.|.||||+|+|.+|...+. .
T Consensus 32 ~~~~~~i~~~~~~~--------~~~~~~~g~tLL-~a~~~~gi~i~~------~C~g~G~CgtC~v~v~~G~~~~~---~ 93 (409)
T PRK05464 32 PSGDVTIKINGDPE--------KTITVPAGGKLL-GALASNGIFLSS------ACGGGGSCGQCRVKVKEGGGDIL---P 93 (409)
T ss_pred cCccEEEEEcCCCc--------EEEEECCCchHH-HHHHHcCCCccc------CCCCccEeCCCEEEEecCCcCCC---h
Confidence 45677877743211 478999999999 999999999998 59988999999999999986443 4
Q ss_pred HHHhccCCC--CCCeEEeeEeEeeeccCCCceEEEEcc
Q 029865 134 TELRYLKKK--PESWRLACQTIVGNKENSGKCRIKYLK 169 (186)
Q Consensus 134 ~E~~~L~~~--~~g~RLACQ~~v~~~~~~gdv~V~~lP 169 (186)
.|...|+.. .++|||+||+.+. +|++| .++
T Consensus 94 ~e~~~l~~~e~~~g~rLaCq~~~~-----~d~~i-e~~ 125 (409)
T PRK05464 94 TELSHISKREAKEGWRLSCQVKVK-----QDMKI-EVP 125 (409)
T ss_pred hhhhhcCHhhccCCcEEEeeCEEC-----CCEEE-EEC
Confidence 566677763 7899999999998 67774 444
No 13
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.48 E-value=1.1e-13 Score=98.07 Aligned_cols=72 Identities=31% Similarity=0.538 Sum_probs=58.7
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCC--CCCCeEEeeEeE
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTI 153 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~ 153 (186)
.++++++|+||| ++++++|+.+++ .|+ .|.||+|+|+|.+|...+.++ ..+.. ..+++||+||+.
T Consensus 10 ~~~~~~~g~~ll-~al~~~g~~~~~------~C~-~g~Cg~C~v~v~~G~~~~~~~-----~~~~~~~~~~~~~LaC~~~ 76 (84)
T cd00207 10 VEVEVPEGETLL-DAAREAGIDIPY------SCR-AGACGTCKVEVVEGEVDQSDP-----SLLDEEEAEGGYVLACQTR 76 (84)
T ss_pred EEEEECCCCcHH-HHHHHcCCCccc------CCC-CcCCcCCEEEEeeCccccCcc-----cCCCHHHHhCCeEEEEeCe
Confidence 478899999999 999999999998 699 589999999999999765442 22332 267899999999
Q ss_pred eeeccCCCceEE
Q 029865 154 VGNKENSGKCRI 165 (186)
Q Consensus 154 v~~~~~~gdv~V 165 (186)
+. ++++|
T Consensus 77 ~~-----~~i~v 83 (84)
T cd00207 77 VT-----DGLVI 83 (84)
T ss_pred eC-----CCcEE
Confidence 97 67664
No 14
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.45 E-value=2.4e-13 Score=120.32 Aligned_cols=89 Identities=27% Similarity=0.362 Sum_probs=68.2
Q ss_pred cEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHH
Q 029865 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTEL 136 (186)
Q Consensus 57 ~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~ 136 (186)
+|+++|.++. ...+++.+|+||| ++++++|+.+++ +|+ .|.||+|+++|++|..... ..+.
T Consensus 4 ~v~~~~~~~~--------~~~~~~~~g~tlL-~a~~~~g~~~p~------~C~-~G~Cg~C~~~~~~G~~~~~---~~~~ 64 (340)
T PRK11872 4 KVALSFADGK--------TLFFPVGKDELLL-DAALRNGINLPL------DCR-EGVCGTCQGRCESGIYSQD---YVDE 64 (340)
T ss_pred EEEEEecCCc--------EEEEEeCCCCcHH-HHHHHcCCCCcC------CCC-CeECCCCEEEEEeCccccC---cccc
Confidence 5677663322 1457889999999 999999999998 599 8999999999999996432 1233
Q ss_pred hccCC--CCCCeEEeeEeEeeeccCCCceEEEEcch
Q 029865 137 RYLKK--KPESWRLACQTIVGNKENSGKCRIKYLKV 170 (186)
Q Consensus 137 ~~L~~--~~~g~RLACQ~~v~~~~~~gdv~V~~lP~ 170 (186)
..|+. +.++++|+||+++. +|++| .+|.
T Consensus 65 ~~l~~~~~~~g~~L~C~~~~~-----~d~~i-~~~~ 94 (340)
T PRK11872 65 DALSERDLAQRKMLACQTRVK-----SDAAF-YFDF 94 (340)
T ss_pred ccCCHHHHhCCeEEEeeCEEC-----CceEE-EecC
Confidence 45655 36899999999998 78875 4554
No 15
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.43 E-value=3.1e-13 Score=118.70 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=63.7
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCC--CCCeEEeeEeE
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTI 153 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLACQ~~ 153 (186)
.++++.+|+||| ++++++||++++ .|+ .|.||+|++++++|..... ..+...|++. .++++|+||++
T Consensus 12 ~~~~~~~g~tlL-~a~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~~~~~---~~~~~~l~~~~~~~g~~L~C~~~ 80 (339)
T PRK07609 12 RQFTAEPDETIL-DAALRQGIHLPY------GCK-NGACGSCKGRLLEGEVEQG---PHQASALSGEERAAGEALTCCAK 80 (339)
T ss_pred eEEEeCCCCcHH-HHHHHcCCCCCC------CCC-CeECCCCEEEEEECcEecc---cccccCCCHHHHhCCcEEEeeCE
Confidence 478899999999 999999999998 598 9999999999999996433 2234556553 67999999999
Q ss_pred eeeccCCCceEEEEcch
Q 029865 154 VGNKENSGKCRIKYLKV 170 (186)
Q Consensus 154 v~~~~~~gdv~V~~lP~ 170 (186)
+. +|++| .+|.
T Consensus 81 ~~-----~d~~i-~~~~ 91 (339)
T PRK07609 81 PL-----SDLVL-EARE 91 (339)
T ss_pred EC-----CCEEE-Eecc
Confidence 98 78875 5554
No 16
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.43 E-value=2.4e-13 Score=120.21 Aligned_cols=80 Identities=35% Similarity=0.620 Sum_probs=65.9
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCC--CCCeEEeeEeE
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTI 153 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLACQ~~ 153 (186)
++..+++|.+|| .+|..+||.++++ |||.|.||.|+|+|.+|..... +.|....+.+ .+||||+||+.
T Consensus 47 ~~~t~~aG~kLL-~~L~~~gifi~Sa------CGGggsC~QCkv~v~~ggge~L---pTe~sh~skrea~eG~RLsCQ~~ 116 (410)
T COG2871 47 KTKTVPAGGKLL-GALASSGIFISSA------CGGGGSCGQCKVRVKKGGGEIL---PTELSHISKREAKEGWRLSCQVN 116 (410)
T ss_pred hceecCCchhHH-HHHHhCCcccccC------CCCCccccccEEEEecCCCccC---cchhhhhhhhhhhccceEEEEec
Confidence 477889999999 9999999999995 9999999999999999874222 3456666654 79999999999
Q ss_pred eeeccCCCceEEEEcchH
Q 029865 154 VGNKENSGKCRIKYLKVE 171 (186)
Q Consensus 154 v~~~~~~gdv~V~~lP~~ 171 (186)
+. .|+. +.+|++
T Consensus 117 Vk-----~dm~-levpEe 128 (410)
T COG2871 117 VK-----HDMD-LEVPEE 128 (410)
T ss_pred cc-----ccce-eechHH
Confidence 98 6665 467764
No 17
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.40 E-value=5e-13 Score=124.46 Aligned_cols=78 Identities=28% Similarity=0.528 Sum_probs=66.1
Q ss_pred cCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCCCCCeEEeeEeEeeeccCC
Q 029865 81 ISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENS 160 (186)
Q Consensus 81 ~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~~~~~~ 160 (186)
++|+||| +++++.|+-+.+ .|||+|+||.|+|-|.+|...+..-+++|+. +.. .||||+||+++.
T Consensus 15 ~~g~~il-~aar~~gv~i~s------~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~-~~~--~g~rlac~~~v~----- 79 (614)
T COG3894 15 DEGTTIL-DAARRLGVYIRS------VCGGKGTCGKCQVVVQEGNHKIVSSTDHEKY-LRE--RGYRLACQAQVL----- 79 (614)
T ss_pred CCCchHH-HHHHhhCceEee------ecCCCccccceEEEEEeCCceeccchhHHHH-HHh--hceeeeeehhhc-----
Confidence 5899999 999999999998 6999999999999999999666655677543 333 499999999998
Q ss_pred CceEEEEcchHhHH
Q 029865 161 GKCRIKYLKVEALC 174 (186)
Q Consensus 161 gdv~V~~lP~~~~~ 174 (186)
||++ +.+|+++..
T Consensus 80 gd~~-i~ip~es~l 92 (614)
T COG3894 80 GDLV-IFIPPESRL 92 (614)
T ss_pred CceE-EEcCchhhH
Confidence 8987 699998854
No 18
>PRK05713 hypothetical protein; Provisional
Probab=99.40 E-value=4.8e-13 Score=116.87 Aligned_cols=73 Identities=29% Similarity=0.548 Sum_probs=60.1
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCC--CCCCeEEeeEeE
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTI 153 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLACQ~~ 153 (186)
.++++.+|+||| ++++++||++++ .|+ .|.||+|+++|++|.... .....|++ ..+++||+||+.
T Consensus 9 ~~~~~~~g~tlL-~a~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~~~~-----~~~~~l~~~~~~~g~~L~C~~~ 75 (312)
T PRK05713 9 RRWSVPAGSNLL-DALNAAGVAVPY------SCR-AGSCHACLVRCLQGEPED-----ALPEALAAEKREQGWRLACQCR 75 (312)
T ss_pred eEEEECCCCcHH-HHHHHcCCCCCc------CCC-CcCCCCCeEEEEeCcccc-----CccccCCHHHHhCCeEEEeECE
Confidence 478999999999 999999999998 599 899999999999998531 11234544 268899999999
Q ss_pred eeeccCCCceEEE
Q 029865 154 VGNKENSGKCRIK 166 (186)
Q Consensus 154 v~~~~~~gdv~V~ 166 (186)
+. +|++|.
T Consensus 76 ~~-----~d~~i~ 83 (312)
T PRK05713 76 VV-----GDLRVE 83 (312)
T ss_pred EC-----CceEEE
Confidence 98 788754
No 19
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.39 E-value=3.1e-13 Score=95.26 Aligned_cols=69 Identities=38% Similarity=0.610 Sum_probs=50.5
Q ss_pred EEEEecCCch-HHHHHHHHC-CCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCCCCCeEEeeEeE
Q 029865 76 ERAKAISGEK-LLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTI 153 (186)
Q Consensus 76 ~~v~v~~G~t-LLr~al~~~-GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLACQ~~ 153 (186)
.++++.+|+| || ++|+++ |+++++ .|+|.+ ||+|+|+|.+|++ .......|.+.+. ..+.||+||++
T Consensus 8 ~~~~~~~~~~~ll-~~~~~~~gi~i~~------~C~~g~-Cg~C~v~v~~G~~-~~~~~~~~~~~~~--~~~~rLaCq~~ 76 (78)
T PF00111_consen 8 VTVEVPPGETLLL-DALERAGGIGIPY------SCGGGG-CGTCRVRVLEGEV-QSNETFLEDEELA--EGGIRLACQTR 76 (78)
T ss_dssp EEEEEETTSBBHH-HHHHHTTTTTSTT------SSSSSS-SSTTEEEEEESEE-ETTTSSSHHHHHH--TTEEEEGGGSE
T ss_pred EEEEeCCCccHHH-HHHHHcCCCCccc------CCCCCc-cCCcEEEEeeCcc-cCCcccCCHHHHH--cCCCcCCcEEE
Confidence 5888999999 99 999999 999998 599655 9999999999986 2111111111111 23358999998
Q ss_pred ee
Q 029865 154 VG 155 (186)
Q Consensus 154 v~ 155 (186)
++
T Consensus 77 ~t 78 (78)
T PF00111_consen 77 VT 78 (78)
T ss_dssp ES
T ss_pred eC
Confidence 74
No 20
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.38 E-value=1.1e-12 Score=115.35 Aligned_cols=72 Identities=25% Similarity=0.476 Sum_probs=59.6
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCC--CCCeEEeeEeE
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTI 153 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLACQ~~ 153 (186)
+++.+.+|+||| ++|+++||++++ +|+ .|.||+|++++++|.+... ....|++. ++|++|+||++
T Consensus 258 ~~~~~~~~~~lL-~~~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~v~~~-----~~~~l~~~~~~~g~~l~C~~~ 324 (332)
T PRK10684 258 REFYAPVGTTLL-EALESNKVPVVA------ACR-AGVCGCCKTKVVSGEYTVS-----STMTLTPAEIAQGYVLACSCH 324 (332)
T ss_pred EEEEeCCCChHH-HHHHHcCCCccC------CCC-CcCCCCCEEEEecCccccc-----ccccCCHHHHhCCcEEEeeCE
Confidence 478889999999 999999999998 599 9999999999999996421 12345543 68999999999
Q ss_pred eeeccCCCceEE
Q 029865 154 VGNKENSGKCRI 165 (186)
Q Consensus 154 v~~~~~~gdv~V 165 (186)
+. +|++|
T Consensus 325 ~~-----~d~~i 331 (332)
T PRK10684 325 PQ-----GDLVL 331 (332)
T ss_pred EC-----CCeEE
Confidence 98 77764
No 21
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.32 E-value=5.3e-12 Score=111.42 Aligned_cols=65 Identities=26% Similarity=0.485 Sum_probs=54.7
Q ss_pred EEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCC--CCCeEEeeEeEee
Q 029865 78 AKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTIVG 155 (186)
Q Consensus 78 v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLACQ~~v~ 155 (186)
+.+.+|+||| ++++++||++++ +|+ .|.||+|++++++|.+.+. +...|+.. .+|++|+||+++.
T Consensus 277 ~~~~~~~slL-~~~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~v~~~-----~~~~l~~~~~~~g~~l~C~~~~~ 343 (352)
T TIGR02160 277 SSLSRDESVL-DAALRARPDLPF------ACK-GGVCGTCRAKVLEGKVDME-----RNYALEPDEVDAGYVLTCQAYPL 343 (352)
T ss_pred EecCCCCcHH-HHHHHcCCCCcC------CCC-CccCCCCEEEEeccccccc-----cccCCCHHHHhCCcEEEeeEEEC
Confidence 5788999999 999999999998 699 7999999999999996432 22345543 6889999999998
No 22
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.88 E-value=2.3e-09 Score=82.38 Aligned_cols=91 Identities=23% Similarity=0.320 Sum_probs=64.0
Q ss_pred cEEEEEecCCCCC-CCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHH
Q 029865 57 EIELEFIAPRAGD-DGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTE 135 (186)
Q Consensus 57 ~V~v~f~~~~~~~-d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E 135 (186)
+++|..++++.+. ...|+..++++.+++|+| ++|....-.+..++..+.+|+ .|.||+|.++|- |.
T Consensus 1 t~~I~R~~~~~~~~~~~~~~y~v~~~~~~tVL-d~L~~Ik~~~D~sLafr~sCr-~giCGsCam~IN-G~---------- 67 (110)
T PF13085_consen 1 TLRIFRFDPESDEGEPYYQEYEVPVEPGMTVL-DALNYIKEEQDPSLAFRYSCR-SGICGSCAMRIN-GR---------- 67 (110)
T ss_dssp EEEEEE--TTSTTSS-EEEEEEEEGGSTSBHH-HHHHHHHHHT-TT--B--SSS-SSSSSTTEEEET-TE----------
T ss_pred CEEEEEcCCCCCCCCCeEEEEEecCCCCCcHH-HHHHHHHhccCCCeEEEecCC-CCCCCCCEEEEC-Cc----------
Confidence 4677777775423 456888899999999999 999877666666677788999 899999999985 65
Q ss_pred HhccCCCCCCeEEeeEeEeeeccCCC---ceEEEEcchH
Q 029865 136 LRYLKKKPESWRLACQTIVGNKENSG---KCRIKYLKVE 171 (186)
Q Consensus 136 ~~~L~~~~~g~RLACQ~~v~~~~~~g---dv~V~~lP~~ 171 (186)
.+|||.+.+. +..+. .++|..|+..
T Consensus 68 ----------~~LAC~t~v~-~~~~~~~~~i~IePL~~f 95 (110)
T PF13085_consen 68 ----------PRLACKTQVD-DLIEKFGNVITIEPLPNF 95 (110)
T ss_dssp ----------EEEGGGSBGG-GCTTSETBEEEEEESTTS
T ss_pred ----------eecceeeEch-hccCCCcceEEEEECCCC
Confidence 5999999997 33332 3788888753
No 23
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=98.79 E-value=1e-08 Score=89.90 Aligned_cols=90 Identities=23% Similarity=0.366 Sum_probs=65.9
Q ss_pred EEEEEecCCCCCCCCcceEEEEecC-CchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHH
Q 029865 58 IELEFIAPRAGDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTEL 136 (186)
Q Consensus 58 V~v~f~~~~~~~d~~~~v~~v~v~~-G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~ 136 (186)
++|..++++.+....|+..++++.+ |+||| ++|....-....++..+++|+ .|.||+|.+.|- |.
T Consensus 46 ~~i~R~~p~~~~~~~~~~y~v~~~~~~~tVL-d~L~~Ik~~~D~sLsfr~sCr-~giCGsCam~IN-G~----------- 111 (276)
T PLN00129 46 FQIYRWNPDNPGKPHLQSYKVDLNDCGPMVL-DVLIKIKNEQDPSLTFRRSCR-EGICGSCAMNID-GK----------- 111 (276)
T ss_pred EEEEeeCCCCCCCceeEEEEeCCCCCCchHH-HHHHHHHHcCCCCeEEeccCC-CCCCCCCeeEEC-Cc-----------
Confidence 5556666654334457767777765 89999 999886555666677788999 899999999985 55
Q ss_pred hccCCCCCCeEEeeEeEeeeccCCCceEEEEcchH
Q 029865 137 RYLKKKPESWRLACQTIVGNKENSGKCRIKYLKVE 171 (186)
Q Consensus 137 ~~L~~~~~g~RLACQ~~v~~~~~~gdv~V~~lP~~ 171 (186)
.+|||++.+. ...++.++|..++..
T Consensus 112 ---------p~LAC~t~v~-~~~~~~i~iePl~~f 136 (276)
T PLN00129 112 ---------NTLACLTKID-RDESGPTTITPLPHM 136 (276)
T ss_pred ---------ccccccccHh-hcCCCcEEEEECCCC
Confidence 5899999986 333356778778653
No 24
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=98.67 E-value=3.6e-08 Score=84.56 Aligned_cols=91 Identities=21% Similarity=0.306 Sum_probs=68.3
Q ss_pred cEEEEEecCCC-CCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHH
Q 029865 57 EIELEFIAPRA-GDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTE 135 (186)
Q Consensus 57 ~V~v~f~~~~~-~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E 135 (186)
+|+|..+++.. +....|+..++++.+++||| +||....-....+++.+.+|+ .|.||+|.+.|- |.
T Consensus 6 ~~~i~R~~p~~~~~~~~~~~y~v~~~~~~tvL-daL~~Ik~~~D~sL~fr~sCr-~giCGsCam~IN-G~---------- 72 (239)
T PRK13552 6 TFNIFRYNPQDPGSKPHMVTYQLEETPGMTLF-IALNRIREEQDPSLQFDFVCR-AGICGSCAMVIN-GR---------- 72 (239)
T ss_pred EEEEEeeCCCCCCCCcceEEEEecCCCCCCHH-HHHHHHHhcCCCCeeEeccCC-CCCCCCceeEEC-Ce----------
Confidence 45666666532 22345777889999999999 999888766777777889999 999999999985 65
Q ss_pred HhccCCCCCCeEEeeEeEeeeccCCCceEEEEcchH
Q 029865 136 LRYLKKKPESWRLACQTIVGNKENSGKCRIKYLKVE 171 (186)
Q Consensus 136 ~~~L~~~~~g~RLACQ~~v~~~~~~gdv~V~~lP~~ 171 (186)
.+|||++.+. ...++.++|..|+..
T Consensus 73 ----------~~LAC~t~v~-~~~~~~i~iePl~~f 97 (239)
T PRK13552 73 ----------PTLACRTLTS-DYPDGVITLMPLPVF 97 (239)
T ss_pred ----------EhhhhhccHh-hcCCCcEEEEECCCC
Confidence 4899999886 222346788887653
No 25
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.57 E-value=1.3e-07 Score=80.37 Aligned_cols=64 Identities=30% Similarity=0.416 Sum_probs=51.3
Q ss_pred CCcEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCC-----CceeecCCEEEEecCcccCC
Q 029865 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLN 129 (186)
Q Consensus 55 ~~~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~Cg-----G~G~CGTC~V~V~~G~~~l~ 129 (186)
|..|+|++.+ ..+++++|+||| +|++++||.+++ .|. +.|.|+.|.|+|. |..
T Consensus 1 m~~v~i~idg-----------~~~~~~~g~til-~a~~~~gi~ip~------~C~~~~~~~~G~C~~C~V~v~-g~~--- 58 (234)
T PRK07569 1 MSVKTLTIDD-----------QLVSAREGETLL-EAAREAGIPIPT------LCHLDGLSDVGACRLCLVEIE-GSN--- 58 (234)
T ss_pred CceEEEEECC-----------EEEEeCCCCHHH-HHHHHcCCCCCc------CcCCCCCCCCCccCCcEEEEC-CCC---
Confidence 4567777522 468999999999 999999999998 475 5899999999994 531
Q ss_pred CCChHHHhccCCCCCCeEEeeEeEee
Q 029865 130 ERTNTELRYLKKKPESWRLACQTIVG 155 (186)
Q Consensus 130 ~~t~~E~~~L~~~~~g~RLACQ~~v~ 155 (186)
+.+.||++.+.
T Consensus 59 ---------------~~~~aC~t~v~ 69 (234)
T PRK07569 59 ---------------KLLPACVTPVA 69 (234)
T ss_pred ---------------ccccCcCCCCC
Confidence 35679999998
No 26
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.53 E-value=2.1e-07 Score=86.09 Aligned_cols=83 Identities=24% Similarity=0.377 Sum_probs=58.1
Q ss_pred EEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHh
Q 029865 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELR 137 (186)
Q Consensus 58 V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~ 137 (186)
++|..++++.+ ...|+..++++++|+||| ++|++.+......+....+|+ .|.||+|.|+| +|.
T Consensus 6 ~~i~r~~~~~~-~~~~~~~~v~~~~~~tvl-~al~~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v-~G~------------ 69 (486)
T PRK06259 6 ITVKRFDPEKD-EPHFESYEVPVKEGMTVL-DALEYINKTYDANIAFRSSCR-AGQCGSCAVTI-NGE------------ 69 (486)
T ss_pred EEEEecCCCCC-CceeEEEEEeCCCCChHH-HHHHHhchhcCCCceecCCCC-CCCCCCCEEEE-CCe------------
Confidence 44555555543 356887888899999999 999975443112222234798 89999999996 564
Q ss_pred ccCCCCCCeEEeeEeEeeeccCCCceEEEEcc
Q 029865 138 YLKKKPESWRLACQTIVGNKENSGKCRIKYLK 169 (186)
Q Consensus 138 ~L~~~~~g~RLACQ~~v~~~~~~gdv~V~~lP 169 (186)
.+|+||+.+. .+++|..++
T Consensus 70 --------~~laC~~~~~-----~~~~i~~~~ 88 (486)
T PRK06259 70 --------PVLACKTEVE-----DGMIIEPLD 88 (486)
T ss_pred --------EecccccCCC-----CCCEEEecC
Confidence 4789999997 456766664
No 27
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=98.53 E-value=1.2e-07 Score=81.46 Aligned_cols=90 Identities=26% Similarity=0.348 Sum_probs=69.3
Q ss_pred cEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHH
Q 029865 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTEL 136 (186)
Q Consensus 57 ~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~ 136 (186)
++.|..++++.+ ...|+..+++..+|+||| ++|..-.-....++..+.+|+ .|.||+|.+.|- |.
T Consensus 4 ~~~i~R~~p~~~-~p~~~~yev~~~~~~~vL-daL~~Ik~e~d~~Lsfr~sCR-~gICGSCam~IN-G~----------- 68 (234)
T COG0479 4 KFKIYRYNPDDD-KPYWQTYEVPYDEGMTVL-DALLYIKEEQDPTLSFRRSCR-EGICGSCAMNIN-GK----------- 68 (234)
T ss_pred EEEEEEECCCCC-CcceEEEEecCCCCCcHH-HHHHHHHHhcCCccchhhhcc-CCcCCcceeEEC-Cc-----------
Confidence 466667777543 556777788888999999 999887777777788889999 899999999985 54
Q ss_pred hccCCCCCCeEEeeEeEeeeccCCCceEEEEcchH
Q 029865 137 RYLKKKPESWRLACQTIVGNKENSGKCRIKYLKVE 171 (186)
Q Consensus 137 ~~L~~~~~g~RLACQ~~v~~~~~~gdv~V~~lP~~ 171 (186)
.||||.+.+. ...++.++|..||..
T Consensus 69 ---------prLAC~t~~~-~~~~~~i~iePL~~f 93 (234)
T COG0479 69 ---------PRLACKTLMK-DLEEGVITIEPLPNF 93 (234)
T ss_pred ---------cccchhchhh-hccCCceEEEECCCC
Confidence 4799999886 322335777777743
No 28
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.53 E-value=1.2e-07 Score=81.81 Aligned_cols=88 Identities=15% Similarity=0.227 Sum_probs=62.9
Q ss_pred cEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCC-------ccccCCcccCCCCceeecCCEEEEecCcccCC
Q 029865 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIE-------LYATYGKVMNCGGGGSCGTCIVEIIDGKDLLN 129 (186)
Q Consensus 57 ~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~-------l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~ 129 (186)
+++|..+++ .+....|+..++++.+++||| ++|....-. ...++..+.+|+ .|.||+|.++|- |.
T Consensus 7 ~~~i~R~~~-~~~~~~~q~y~v~~~~~~tvL-daL~~I~~~~~~~~g~~~~~l~fr~sCr-~giCGsCam~IN-G~---- 78 (249)
T PRK08640 7 RLIIKRQDG-PDSKPYWEEFEIPYRPNMNVI-SALMEIRRNPVNAKGEKTTPVVWDMNCL-EEVCGACSMVIN-GK---- 78 (249)
T ss_pred EEEEEeeCC-CCCCceeEEEEecCCCCCcHH-HHHHHHHhcccccccccCCCeeEecccC-CCCCCcCeeEEC-Cc----
Confidence 455566665 223456777889999999999 999765322 112356678999 999999999985 65
Q ss_pred CCChHHHhccCCCCCCeEEeeEeEeeeccCCCceEEEEcch
Q 029865 130 ERTNTELRYLKKKPESWRLACQTIVGNKENSGKCRIKYLKV 170 (186)
Q Consensus 130 ~~t~~E~~~L~~~~~g~RLACQ~~v~~~~~~gdv~V~~lP~ 170 (186)
.+|||++.+. ++.+.++|..|+.
T Consensus 79 ----------------p~LAC~t~v~--~~~~~i~iePl~~ 101 (249)
T PRK08640 79 ----------------PRQACTALID--QLEQPIRLEPMST 101 (249)
T ss_pred ----------------cchhhhChHH--HcCCcEEEEECCC
Confidence 4799999884 3446678877764
No 29
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.52 E-value=7.8e-08 Score=82.63 Aligned_cols=88 Identities=19% Similarity=0.253 Sum_probs=62.7
Q ss_pred EEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHh
Q 029865 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELR 137 (186)
Q Consensus 58 V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~ 137 (186)
++|..++++.+....|+..++++.+|+||| ++|...+-.+...++.+.+|+ .|.||+|.|.|- |.
T Consensus 9 ~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl-~~L~~ik~~~d~~l~fr~~C~-~giCGsC~v~In-G~------------ 73 (244)
T PRK12385 9 IEVLRYNPEVDTEPHSQTYEVPYDETTSLL-DALGYIKDNLAPDLSYRWSCR-MAICGSCGMMVN-NV------------ 73 (244)
T ss_pred EEEEeeCCCCCCCceeEEEEeeCCCCCcHH-HHHHHHHHhcCCCceeccCCC-CCcCCCCcceEC-cc------------
Confidence 455555654433345777888999999999 999776655544455567899 899999999996 54
Q ss_pred ccCCCCCCeEEeeEeEeeeccCCCceEEEEcch
Q 029865 138 YLKKKPESWRLACQTIVGNKENSGKCRIKYLKV 170 (186)
Q Consensus 138 ~L~~~~~g~RLACQ~~v~~~~~~gdv~V~~lP~ 170 (186)
.+|||++.+. +..+.++|..++.
T Consensus 74 --------~~laC~t~~~--~~~~~~~iePl~~ 96 (244)
T PRK12385 74 --------PKLACKTFLR--DYTGGMKVEALAN 96 (244)
T ss_pred --------ChhhHhhHHH--HcCCCeEEeeCCC
Confidence 3678988885 3334577777763
No 30
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.50 E-value=1.9e-07 Score=80.12 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=64.0
Q ss_pred cEEEEEecCCCCCCCCcceEEEEecC-CchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHH
Q 029865 57 EIELEFIAPRAGDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTE 135 (186)
Q Consensus 57 ~V~v~f~~~~~~~d~~~~v~~v~v~~-G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E 135 (186)
+++|..++++.+....|+..++++.+ ++||| ++|..-. ....++..+.+|+ .|.||+|.+.|- |.
T Consensus 6 ~~~i~R~~~~~~~~~~~~~y~v~~~~~~~tvl-d~L~~ik-~~d~~l~fr~sCr-~giCGsCa~~iN-G~---------- 71 (235)
T PRK12575 6 ILHIYRYDPDDDAAPRMQRYEIAPRAEDRMLL-DVLGRVK-AQDETLSYRRSCR-EGICGSDAMNIN-GR---------- 71 (235)
T ss_pred EEEEEeeCCCCCCCceeEEEEecCCCCCCcHH-HHHHHHH-hcCCCeeeeccCC-CCCCCCCeeEEC-Ce----------
Confidence 34555555544334457767777765 56999 9998866 5666677789999 999999999985 54
Q ss_pred HhccCCCCCCeEEeeEeEeeeccCCCceEEEEcch
Q 029865 136 LRYLKKKPESWRLACQTIVGNKENSGKCRIKYLKV 170 (186)
Q Consensus 136 ~~~L~~~~~g~RLACQ~~v~~~~~~gdv~V~~lP~ 170 (186)
.+|||++.+. +..+.++|..++.
T Consensus 72 ----------~~LaC~t~~~--~~~~~i~iePl~~ 94 (235)
T PRK12575 72 ----------NGLACLTNMQ--ALPREIVLRPLPG 94 (235)
T ss_pred ----------EcchhhCcHh--HcCCCEEEeECCC
Confidence 5899999886 3445678777764
No 31
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.45 E-value=2.3e-07 Score=67.30 Aligned_cols=66 Identities=26% Similarity=0.380 Sum_probs=42.0
Q ss_pred cEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCc----ccCCCCceeecCCEEEEecCcccCCCCC
Q 029865 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGK----VMNCGGGGSCGTCIVEIIDGKDLLNERT 132 (186)
Q Consensus 57 ~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~----~~~CgG~G~CGTC~V~V~~G~~~l~~~t 132 (186)
.|+|+|.+ +.+++.+|+||| +|++++||.++..-.. ...|. .|.|+.|.|+|. |.
T Consensus 3 ~v~i~idG-----------~~v~~~~G~til-~al~~~gi~ip~~c~~~~~r~~~~~-~g~C~~C~Vev~-g~------- 61 (82)
T PF13510_consen 3 MVTITIDG-----------KPVEVPPGETIL-EALLAAGIDIPRLCYHGRPRGGLCP-IGSCRLCLVEVD-GE------- 61 (82)
T ss_dssp EEEEEETT-----------EEEEEEET-BHH-HHHHHTT--B-EETTTS-EEBSSSS-STT-SS-EEEES-SE-------
T ss_pred EEEEEECC-----------EEEEEcCCCHHH-HHHHHCCCeEEEeeeccCcccccCC-ccccceEEEEEC-CC-------
Confidence 56777644 478899999999 9999999999974121 33444 699999999996 43
Q ss_pred hHHHhccCCCCCCeEEeeEeEee
Q 029865 133 NTELRYLKKKPESWRLACQTIVG 155 (186)
Q Consensus 133 ~~E~~~L~~~~~g~RLACQ~~v~ 155 (186)
....||++.+.
T Consensus 62 ------------~~v~AC~t~v~ 72 (82)
T PF13510_consen 62 ------------PNVRACSTPVE 72 (82)
T ss_dssp ------------EEEETTT-B--
T ss_pred ------------cceEcccCCCc
Confidence 13689999998
No 32
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.42 E-value=7.6e-07 Score=79.44 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=63.6
Q ss_pred EEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHh
Q 029865 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELR 137 (186)
Q Consensus 58 V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~ 137 (186)
+.|..++++. ...|+..++++.+|+||| ++|...++.++..+....+|+ .|.||+|.|+|. |.
T Consensus 5 ~~i~R~~~~~--~p~~~~~~v~~~~~~tvL-~~l~~i~~~~d~tL~~~~~c~-~~~Cg~C~v~in-G~------------ 67 (329)
T PRK12577 5 FKILRQKQNS--APYVQTYTLEVEPGNTIL-DCLNRIKWEQDGSLAFRKNCR-NTICGSCAMRIN-GR------------ 67 (329)
T ss_pred EEEEeeCCCC--CCeEEEEEEECCCCChHH-HHHHHhCCcCCCCcEEcCCCC-CCCCCCCEEEEC-Ce------------
Confidence 4555555432 345677789999999999 999999999875555567899 799999999994 54
Q ss_pred ccCCCCCCeEEeeEeEeeeccC----------CCceEEEEcch
Q 029865 138 YLKKKPESWRLACQTIVGNKEN----------SGKCRIKYLKV 170 (186)
Q Consensus 138 ~L~~~~~g~RLACQ~~v~~~~~----------~gdv~V~~lP~ 170 (186)
.+|||++.+. +.+ .+.++|..|+.
T Consensus 68 --------~~laC~t~v~-~~~~~~~~~~~~~~~~i~iePl~~ 101 (329)
T PRK12577 68 --------SALACKENVG-SELARLSDSNSGAIPEITIAPLGN 101 (329)
T ss_pred --------eecCcccchh-hhhccccccccCCCCeEEEEECCC
Confidence 4678888775 222 14567777754
No 33
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.38 E-value=1.4e-06 Score=76.27 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=62.8
Q ss_pred cEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHH
Q 029865 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTEL 136 (186)
Q Consensus 57 ~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~ 136 (186)
+++|..++++ .+..|+.+++++.+|+||| ++|...+..+...+.....|+ .|.||+|.|.| +|.
T Consensus 10 ~~~i~R~~~~--~~~~~~~~~v~~~~~~tvL-d~L~~i~~~~d~tl~~~~~C~-~G~CgsC~v~I-NG~----------- 73 (279)
T PRK12576 10 IFKVKRYDPE--KGSWWQEYKVKVDRFTQVT-EALRRIKEEQDPTLSYRASCH-MAVCGSCGMKI-NGE----------- 73 (279)
T ss_pred EEEEEecCCC--CCCeEEEEEEecCCCCHHH-HHHHHhCCccCCCceecCCCC-CCCCCCCEEEE-CCc-----------
Confidence 4555555554 3456778899999999999 999998877644445567897 99999999999 454
Q ss_pred hccCCCCCCeEEeeEeEeeecc---CCCceEEEEcch
Q 029865 137 RYLKKKPESWRLACQTIVGNKE---NSGKCRIKYLKV 170 (186)
Q Consensus 137 ~~L~~~~~g~RLACQ~~v~~~~---~~gdv~V~~lP~ 170 (186)
.+|||++.+. .- ..+.++|+.|+.
T Consensus 74 ---------~~laC~t~v~-~~~~~~~~~~tiePl~~ 100 (279)
T PRK12576 74 ---------PRLACKTLVL-DVAKKYNSVITIEPMDY 100 (279)
T ss_pred ---------EeccccCcHH-HhhcCCCCcEEEEECCC
Confidence 3678888775 21 123466666653
No 34
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.31 E-value=1.7e-06 Score=73.42 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=49.2
Q ss_pred cEEEEEecCCCCCCCCcceEEEEec-CCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCc
Q 029865 57 EIELEFIAPRAGDDGSYPVERAKAI-SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (186)
Q Consensus 57 ~V~v~f~~~~~~~d~~~~v~~v~v~-~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~ 125 (186)
+|+|..++++.+....|+..++++. +|+||| ++|.+.+-.....+....+|+ .|.||+|.|.|. |.
T Consensus 1 ~~~v~r~~~~~~~~~~~~~~~v~~~~~~~tvl-~~L~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~vn-G~ 67 (232)
T PRK05950 1 TFKIYRYNPDVDANPRMQTYEVDVDECGPMVL-DALIKIKNEIDPTLTFRRSCR-EGVCGSDAMNIN-GK 67 (232)
T ss_pred CeEEEecCCCCCCCceeEEEEeCCCCCCCHHH-HHHHHhCCccCCcceeeCCCC-CCCCCCCEEEEC-Cc
Confidence 3667777776544456788899998 999999 999999833322234456897 899999999994 65
No 35
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.26 E-value=2.2e-06 Score=74.31 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=57.4
Q ss_pred CCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCCCCCeEEee
Q 029865 71 GSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (186)
Q Consensus 71 ~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLAC 150 (186)
+.|+.+++++.+++||| ++|++.+.....+++.+.+|+ .|.||+|.|.|- |. .+|||
T Consensus 17 ~~~q~y~v~~~~~~tvL-d~L~~i~~~~d~~l~~r~~C~-~g~CGsCa~~In-G~--------------------p~laC 73 (251)
T PRK12386 17 GELQDYTVEVNEGEVVL-DVIHRLQATQAPDLAVRWNCK-AGKCGSCSAEIN-GR--------------------PRLMC 73 (251)
T ss_pred CceEEEEEeCCCCCCHH-HHHHHhccccCCCCcccCCCC-CCcCCCCEEEEC-cc--------------------EeccH
Confidence 36788899999999999 999997776666677788999 999999999985 54 48888
Q ss_pred EeEeeeccCC--CceEEEEcch
Q 029865 151 QTIVGNKENS--GKCRIKYLKV 170 (186)
Q Consensus 151 Q~~v~~~~~~--gdv~V~~lP~ 170 (186)
++.+. +.+ +.++|+.++.
T Consensus 74 ~t~~~--~~~~~~~itiepl~~ 93 (251)
T PRK12386 74 MTRMS--TFDEDETVTVTPMRT 93 (251)
T ss_pred HhHHH--HhCCCCeEEEccCCC
Confidence 88774 222 3455555543
No 36
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.23 E-value=9.6e-07 Score=74.31 Aligned_cols=73 Identities=27% Similarity=0.377 Sum_probs=51.5
Q ss_pred CcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCCCCCeEEeeE
Q 029865 72 SYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQ 151 (186)
Q Consensus 72 ~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLACQ 151 (186)
.|+..++++.+|+||| ++|.+.+......++...+|+ .|.||+|.|+|- |. .+|||+
T Consensus 13 ~~~~~~v~~~~~~tvl-~~l~~i~~~~~~~l~~~~~C~-~g~Cg~C~v~vn-G~--------------------~~laC~ 69 (220)
T TIGR00384 13 HLQSYEVPADEGMTVL-DALNYIKDEQDPSLAFRRSCR-NGICGSCAMNVN-GK--------------------PVLACK 69 (220)
T ss_pred eeEEEEEeCCCCCcHH-HHHHHHHHhcCCCceeecccC-CCCCCCCeeEEC-CE--------------------Ehhhhh
Confidence 3666788888999999 999987744333344456898 899999999874 54 356888
Q ss_pred eEeeeccCCCc--eEEEEcch
Q 029865 152 TIVGNKENSGK--CRIKYLKV 170 (186)
Q Consensus 152 ~~v~~~~~~gd--v~V~~lP~ 170 (186)
+.+. +. |. ++|..++.
T Consensus 70 t~v~--~~-g~~~~~iepl~~ 87 (220)
T TIGR00384 70 TKVE--DL-GQPVMKIEPLPN 87 (220)
T ss_pred ChHH--Hc-CCCcEEEeeCCC
Confidence 8776 21 33 56666654
No 37
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=98.14 E-value=2.5e-06 Score=73.86 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=60.0
Q ss_pred cEEEEEecCCCCCCCCcceEEEE-ecCCchHHHHHHHHCCCCc----cccCCcccCCCCceeecCCEEEEecCcccCCCC
Q 029865 57 EIELEFIAPRAGDDGSYPVERAK-AISGEKLLRNIMLDNKIEL----YATYGKVMNCGGGGSCGTCIVEIIDGKDLLNER 131 (186)
Q Consensus 57 ~V~v~f~~~~~~~d~~~~v~~v~-v~~G~tLLr~al~~~GI~l----~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~ 131 (186)
+++|..+++. +....|+..+++ +.+++||| ++|....-.+ ..++..+.+|+ .|.||+|.++|- |...++
T Consensus 4 ~~~i~R~~~~-~~~~~~q~y~v~~~~~~~tvL-d~L~~Ik~~~~~~~~~~l~fr~sCr-~~iCGsCam~IN-G~p~~~-- 77 (250)
T PRK07570 4 TLKIWRQKGP-DDKGKFETYEVDDISPDMSFL-EMLDVLNEQLIEKGEEPVAFDHDCR-EGICGMCGLVIN-GRPHGP-- 77 (250)
T ss_pred EEEEEecCCC-CCCceeEEEEecCCCCCCcHH-HHHHHHHHHhhccCCCCeeEecccc-CCcCCcceeEEC-CccCCC--
Confidence 3555555532 123346666777 67999999 9997543111 11255678999 999999999985 764332
Q ss_pred ChHHHhccCCCCCCeEEeeEeEeeeccCC-CceEEEEcc
Q 029865 132 TNTELRYLKKKPESWRLACQTIVGNKENS-GKCRIKYLK 169 (186)
Q Consensus 132 t~~E~~~L~~~~~g~RLACQ~~v~~~~~~-gdv~V~~lP 169 (186)
-.-||||++.+. ...+ +.++|..++
T Consensus 78 ------------~~~~LAC~t~~~-~~~~~~~i~iePl~ 103 (250)
T PRK07570 78 ------------DRGTTTCQLHMR-SFKDGDTITIEPWR 103 (250)
T ss_pred ------------Ccccchhhhhhh-hcCCCCeEEEEECC
Confidence 113899999875 2212 456777776
No 38
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=97.97 E-value=2e-05 Score=77.75 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=49.2
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCC-----CceeecCCEEEEecCcccCCCCChHHHhccCCCCCCeEEee
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~Cg-----G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLAC 150 (186)
.++++++|+||| +|++++||.+++ .|. ..|.|++|.|+|.+|... ...++++||
T Consensus 9 ~~~~~~~g~til-~a~~~~gi~ip~------~C~~~~~~~~G~C~~C~v~v~~g~~~--------------~~~~~~~aC 67 (847)
T PRK08166 9 KEYEVNGADNLL-EACLSLGIDIPY------FCWHPALGSVGACRQCAVKQYQNPED--------------TRGRLVMSC 67 (847)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCCCc------cccCCCCCCCCccCCCeEEEeecCcc--------------CCCCcccCc
Confidence 478899999999 999999999998 696 369999999999988421 123588999
Q ss_pred EeEee
Q 029865 151 QTIVG 155 (186)
Q Consensus 151 Q~~v~ 155 (186)
++.+.
T Consensus 68 ~~~v~ 72 (847)
T PRK08166 68 MTPAT 72 (847)
T ss_pred CCCCC
Confidence 99887
No 39
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.52 E-value=0.00023 Score=68.57 Aligned_cols=74 Identities=31% Similarity=0.451 Sum_probs=55.2
Q ss_pred CCcEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccccCCcccCCC-----CceeecCCEEEEecCcccCC
Q 029865 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLN 129 (186)
Q Consensus 55 ~~~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~Cg-----G~G~CGTC~V~V~~G~~~l~ 129 (186)
|..|+|++.+ .++++++|+||| +|++++|+.++. .|. +.|.|+.|.|+|. |..
T Consensus 1 ~~~v~~~idg-----------~~~~~~~g~ti~-~a~~~~g~~ip~------~c~~~~~~~~g~C~~C~V~v~-g~~--- 58 (652)
T PRK12814 1 MNTISLTING-----------RSVTAAPGTSIL-EAAASAGITIPT------LCFHQELEATGSCWMCIVEIK-GKN--- 58 (652)
T ss_pred CCeEEEEECC-----------EEEEeCCcCcHH-HHHHHcCCcccc------ccCCCCCCCccccceeEEEEC-CCc---
Confidence 3456776533 488999999999 999999999997 476 3799999999984 431
Q ss_pred CCChHHHhccCCCCCCeEEeeEeEeeeccCCCceEEEEcch
Q 029865 130 ERTNTELRYLKKKPESWRLACQTIVGNKENSGKCRIKYLKV 170 (186)
Q Consensus 130 ~~t~~E~~~L~~~~~g~RLACQ~~v~~~~~~gdv~V~~lP~ 170 (186)
+..+||++.+. +|+ .|.+-.+
T Consensus 59 ---------------~~~~aC~t~~~----~Gm-~v~t~~~ 79 (652)
T PRK12814 59 ---------------RFVPACSTAVS----EGM-VIETENA 79 (652)
T ss_pred ---------------ceecCcCCCCC----CCC-EEEeCcH
Confidence 24679999997 365 4455443
No 40
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=97.27 E-value=0.00073 Score=60.10 Aligned_cols=70 Identities=20% Similarity=0.349 Sum_probs=50.3
Q ss_pred CCCCcEEEEEecCCCCCCCCcceEEEEe-cCCchHHHHHHHHCCCCcccc-CCcccCCCCceeecCCEEEEecCcccCCC
Q 029865 53 PEKPEIELEFIAPRAGDDGSYPVERAKA-ISGEKLLRNIMLDNKIELYAT-YGKVMNCGGGGSCGTCIVEIIDGKDLLNE 130 (186)
Q Consensus 53 ~~~~~V~v~f~~~~~~~d~~~~v~~v~v-~~G~tLLr~al~~~GI~l~~~-~~~~~~CgG~G~CGTC~V~V~~G~~~l~~ 130 (186)
+-.|++.|+..+ .++++ ++|+||| +|++++||.||+- |.. ...-.|.|..|.|+|. |..
T Consensus 64 ~~~~~~~I~IDG-----------k~VeV~~~G~TIL-eAAr~~GI~IPtLCy~~--~L~p~G~CRlClVEVe-G~~---- 124 (297)
T PTZ00305 64 EHKPRAIMFVNK-----------RPVEIIPQEENLL-EVLEREGIRVPKFCYHP--ILSVAGNCRMCLVQVD-GTQ---- 124 (297)
T ss_pred ccCCceEEEECC-----------EEEEecCCCChHH-HHHHHcCCCcCccccCC--CCCCCCccceeEEEEC-CCc----
Confidence 456777777522 58898 8999999 9999999999982 111 1123577999999984 442
Q ss_pred CChHHHhccCCCCCCeEEeeEeEee
Q 029865 131 RTNTELRYLKKKPESWRLACQTIVG 155 (186)
Q Consensus 131 ~t~~E~~~L~~~~~g~RLACQ~~v~ 155 (186)
+..-||.+.+.
T Consensus 125 --------------~lv~AC~tpV~ 135 (297)
T PTZ00305 125 --------------NLVVSCATVAL 135 (297)
T ss_pred --------------CcccccCCcCC
Confidence 23448999887
No 41
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.15 E-value=0.0012 Score=65.75 Aligned_cols=65 Identities=29% Similarity=0.384 Sum_probs=48.9
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCCCCCeEEeeEeEee
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVG 155 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v~ 155 (186)
.++++++|+||| +|++++||.++.- --...|...|.|+.|.|+|. |. ..+||++.+.
T Consensus 9 ~~v~~~~G~til-~aa~~~gi~iP~l-C~~~~~~~~G~Cr~C~VeV~-G~--------------------~~~AC~t~v~ 65 (819)
T PRK08493 9 KECEAQEGEYIL-NVARRNGIFIPAI-CYLSGCSPTLACRLCMVEAD-GK--------------------RVYSCNTKAK 65 (819)
T ss_pred EEEEeCCCCHHH-HHHHHcCCccccc-cccCCCCCCccccceEEEEC-CE--------------------EeccccCCCC
Confidence 588999999999 9999999999851 11124566799999999994 43 2569999997
Q ss_pred eccCCCceEEEEc
Q 029865 156 NKENSGKCRIKYL 168 (186)
Q Consensus 156 ~~~~~gdv~V~~l 168 (186)
+|+. |.+-
T Consensus 66 ----dGM~-V~T~ 73 (819)
T PRK08493 66 ----EGMN-ILTN 73 (819)
T ss_pred ----CCCE-EEec
Confidence 4664 4443
No 42
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.00 E-value=0.0019 Score=63.78 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=48.3
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCC-----CceeecCCEEEEecCcccCCCCChHHHhccCCCCCCeEEee
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~Cg-----G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLAC 150 (186)
.++++++|+||| +|+..+||.+++ .|. ..|.|.-|.|+|. |.. ...-||
T Consensus 12 ~~~~~~~g~til-~aa~~~gi~ip~------~C~~~~l~~~g~Cr~C~Vev~-g~~------------------~~~~aC 65 (797)
T PRK07860 12 VEVSVPKGTLVI-RAAELLGIQIPR------FCDHPLLDPVGACRQCLVEVE-GQR------------------KPQASC 65 (797)
T ss_pred EEEEeCCCChHH-HHHHHcCCCCCe------ecCCCCCCCCcccCccEEEEC-CCc------------------cccccc
Confidence 588999999999 999999999998 464 3789999999994 431 134599
Q ss_pred EeEeeeccCCCceEEEEc
Q 029865 151 QTIVGNKENSGKCRIKYL 168 (186)
Q Consensus 151 Q~~v~~~~~~gdv~V~~l 168 (186)
.+.+. +|+. |.+-
T Consensus 66 ~t~v~----~gm~-V~t~ 78 (797)
T PRK07860 66 TTTVT----DGMV-VKTQ 78 (797)
T ss_pred CCCCC----CCcE-EEeC
Confidence 99997 3664 4553
No 43
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=96.96 E-value=0.005 Score=52.64 Aligned_cols=43 Identities=28% Similarity=0.636 Sum_probs=31.8
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCc
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~ 125 (186)
+++++.++++|| ++|++.. .+. +....|+ .|.||.|.|.| +|.
T Consensus 61 ~~~~v~~~~tLL-d~LR~~l-~lt---GtK~GC~-~G~CGACTVlV-dG~ 103 (217)
T PRK11433 61 EQLEVDTRTTLL-DALREHL-HLT---GTKKGCD-HGQCGACTVLV-NGR 103 (217)
T ss_pred EEEecCCCCcHH-HHHHHhc-CCC---CCCCCCC-CCCcCceEEEE-CCE
Confidence 467899999999 9998753 222 2234698 89999999954 565
No 44
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=96.94 E-value=0.0018 Score=61.81 Aligned_cols=63 Identities=25% Similarity=0.316 Sum_probs=49.1
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCC-----CceeecCCEEEEecCcccCCCCChHHHhccCCCCCCeEEee
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~Cg-----G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLAC 150 (186)
.++++++|+||| +|++++||.+++ .|. ..|.|..|.|+|. |... ....||
T Consensus 6 ~~~~~~~g~~il-~a~~~~gi~ip~------~C~~~~l~~~g~Cr~C~v~v~-g~~~-----------------~~~~aC 60 (603)
T TIGR01973 6 KELEVPKGTTVL-QACLSAGIEIPR------FCYHEKLSIAGNCRMCLVEVE-KFPD-----------------KPVASC 60 (603)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCccc------cCCCCCCCCCCccccCEEEEC-CCCC-----------------Cccccc
Confidence 689999999999 999999999998 684 4689999999985 4310 135699
Q ss_pred EeEeeeccCCCceEEEEc
Q 029865 151 QTIVGNKENSGKCRIKYL 168 (186)
Q Consensus 151 Q~~v~~~~~~gdv~V~~l 168 (186)
++.+. +|+. |.+-
T Consensus 61 ~~~~~----~gm~-v~t~ 73 (603)
T TIGR01973 61 ATPVT----DGMK-ISTN 73 (603)
T ss_pred CCCCC----CCCE-EEeC
Confidence 99998 4664 4443
No 45
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=96.71 E-value=0.0037 Score=61.00 Aligned_cols=60 Identities=25% Similarity=0.367 Sum_probs=46.8
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCC-----CceeecCCEEEEecCcccCCCCChHHHhccCCCCCCeEEee
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~Cg-----G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLAC 150 (186)
.++++++|+||| +|++++||.+|. .|- -.|.|..|.|+|..+... ..-||
T Consensus 9 ~~v~v~~g~til-~a~~~~gi~IP~------lCy~~~l~~~g~Cr~ClVev~~~~~~------------------~~~sC 63 (687)
T PRK09130 9 KEIEVPDGYTLL-QACEAAGAEIPR------FCYHERLSIAGNCRMCLVEVKGGPPK------------------PVASC 63 (687)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCcCc------ccCCCCCCCCCCCCCCEEEECCCCCC------------------ccccc
Confidence 589999999999 999999999998 573 368999999999643111 23489
Q ss_pred EeEeeeccCCCceE
Q 029865 151 QTIVGNKENSGKCR 164 (186)
Q Consensus 151 Q~~v~~~~~~gdv~ 164 (186)
.+.+. +|+.+
T Consensus 64 ~~~v~----~gm~v 73 (687)
T PRK09130 64 AMPVG----EGMVI 73 (687)
T ss_pred CCCCC----CCCEE
Confidence 99887 46654
No 46
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=96.31 E-value=0.0091 Score=58.56 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=47.5
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCC-----ceeecCCEEEEecCcccCCCCChHHHhccCCCCCCeEEee
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG-----~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLAC 150 (186)
.++++++|+||| +|++++||.+++ .|-- .|.|..|.|+|. |.. ..+.||
T Consensus 9 ~~~~~~~g~~il-~a~~~~g~~ip~------~c~~~~~~~~~~C~~C~v~v~-~~~------------------~~~~aC 62 (776)
T PRK09129 9 KKVEVPEGSMVI-EAADKAGIYIPR------FCYHKKLSIAANCRMCLVEVE-KAP------------------KPLPAC 62 (776)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCCCc------ccCCCCCCCCCCcceeEEEEC-CCC------------------CcCccc
Confidence 588999999999 999999999987 5762 378999999984 331 235699
Q ss_pred EeEeeeccCCCceEEEE
Q 029865 151 QTIVGNKENSGKCRIKY 167 (186)
Q Consensus 151 Q~~v~~~~~~gdv~V~~ 167 (186)
.+.+. +|+.+ .+
T Consensus 63 ~~~~~----~gm~v-~t 74 (776)
T PRK09129 63 ATPVT----DGMKV-FT 74 (776)
T ss_pred CCCCC----CCCEE-Ec
Confidence 99887 46644 44
No 47
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=95.98 E-value=0.015 Score=57.20 Aligned_cols=62 Identities=23% Similarity=0.398 Sum_probs=48.1
Q ss_pred EEEEecCCchHHHHHHHHCCCCcccc-CCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCCCCCeEEeeEeEe
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYAT-YGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIV 154 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~-~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLACQ~~v 154 (186)
.++++++|+||| +|++++||+||+. |. -.|+=.|.|..|.|.+..+. ...-||-+.+
T Consensus 9 ~ei~v~~g~tvL-qAa~~aGi~IP~fCyh--~~ls~~GaCRmClVEveg~~-------------------k~~~SC~tpv 66 (693)
T COG1034 9 KEIEVPEGETVL-QAAREAGIDIPTFCYH--PRLSIAGACRMCLVEVEGAP-------------------KLVASCATPV 66 (693)
T ss_pred EEEecCCCcHHH-HHHHHcCCCCCccccc--CCCCcccceeEEEEEecCCC-------------------cccccccccc
Confidence 589999999999 9999999999983 11 23556789999999997543 1345899977
Q ss_pred eeccCCCce
Q 029865 155 GNKENSGKC 163 (186)
Q Consensus 155 ~~~~~~gdv 163 (186)
. +|++
T Consensus 67 ~----dGM~ 71 (693)
T COG1034 67 T----DGMV 71 (693)
T ss_pred C----CCeE
Confidence 7 4665
No 48
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=95.90 E-value=0.015 Score=47.54 Aligned_cols=42 Identities=24% Similarity=0.491 Sum_probs=33.2
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCc
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~ 125 (186)
+++++.++++|| +.|++.|+ . +....|+ .|.||.|.|.|. |.
T Consensus 18 ~~~~~~~~~~Ll-~~LR~~gl--t---gtK~GC~-~G~CGACtVlvd-g~ 59 (159)
T PRK09908 18 FQLHAAPGTPLS-ELLREQGL--L---SVKQGCC-VGECGACTVLVD-GT 59 (159)
T ss_pred EEEecCCCCcHH-HHHHHcCC--C---CCCCCcC-CCCCCCcEEEEC-Cc
Confidence 477899999999 99998654 2 2345798 899999999984 54
No 49
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=95.29 E-value=0.028 Score=45.48 Aligned_cols=42 Identities=26% Similarity=0.614 Sum_probs=32.3
Q ss_pred EEEEecCCchHHHHHHHHC-CCCccccCCcccCCCCceeecCCEEEEecCc
Q 029865 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~-GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~ 125 (186)
++++++++++|| ++|++. |+ . +....|+ .|.||.|.|.|. |+
T Consensus 11 ~~~~~~~~~~Ll-~~LR~~lgl--t---g~K~gC~-~G~CGACtVlvd-g~ 53 (148)
T TIGR03193 11 REDAVADNMLLV-DYLRDTVGL--T---GTKQGCD-GGECGACTVLVD-GR 53 (148)
T ss_pred EEeecCCCCcHH-HHHHHhcCC--C---CCCCCCC-CCCCCCCEEEEC-Ce
Confidence 467889999999 999874 43 2 2345798 899999999984 54
No 50
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=95.18 E-value=0.038 Score=44.75 Aligned_cols=40 Identities=25% Similarity=0.518 Sum_probs=30.4
Q ss_pred EEEEecCCchHHHHHHHHC-CCCccccCCcccCCCCceeecCCEEEEe
Q 029865 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEII 122 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~-GI~l~~~~~~~~~CgG~G~CGTC~V~V~ 122 (186)
.++.+.++++|| ++|++. |+.- ....|+ .|.||.|.|.|.
T Consensus 13 ~~~~~~~~~~Ll-~~LR~~~~ltg-----tK~gC~-~G~CGACtVlvd 53 (151)
T TIGR03198 13 WEVAAVPTTRLS-DLLRKELQLTG-----TKVSCG-IGRCGACSVLID 53 (151)
T ss_pred EEeecCCCcHHH-HHHHhccCCCC-----CCCCCC-CCcCCccEEEEC
Confidence 367788999999 888764 5432 224698 899999999994
No 51
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=95.11 E-value=0.11 Score=45.04 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=52.2
Q ss_pred cEEEEEecCCCCCCC-CcceEEEEec-CCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChH
Q 029865 57 EIELEFIAPRAGDDG-SYPVERAKAI-SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNT 134 (186)
Q Consensus 57 ~V~v~f~~~~~~~d~-~~~v~~v~v~-~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~ 134 (186)
+++|-..+|+..++. +.+..+|+.. -|--+| |||.+-.-++...++++-+|+ .|.||+|...|- |.
T Consensus 48 tFeIYRwnPd~pg~kP~~Q~y~vDL~~CGpMvL-DALiKIKnE~DptLTFRRSCR-EGICGSCAMNI~-G~--------- 115 (288)
T KOG3049|consen 48 TFEIYRWNPDNPGDKPHLQTYEVDLNDCGPMVL-DALIKIKNEMDPTLTFRRSCR-EGICGSCAMNIN-GT--------- 115 (288)
T ss_pred eEEEEecCCCCCCCCccceeeeecHHhcchHHH-HHHHHhhcccCCceehhhhhh-ccccccceeccC-CC---------
Confidence 345555566543322 2222233332 356788 999998888888889999999 999999999985 33
Q ss_pred HHhccCCCCCCeEEeeEeEee
Q 029865 135 ELRYLKKKPESWRLACQTIVG 155 (186)
Q Consensus 135 E~~~L~~~~~g~RLACQ~~v~ 155 (186)
--|||.+.+.
T Consensus 116 -----------NtLACi~kId 125 (288)
T KOG3049|consen 116 -----------NTLACICKID 125 (288)
T ss_pred -----------ceeEEEEeec
Confidence 3578888876
No 52
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=93.67 E-value=0.15 Score=50.90 Aligned_cols=42 Identities=40% Similarity=0.616 Sum_probs=35.5
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCC-----CceeecCCEEEEecCc
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGK 125 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~Cg-----G~G~CGTC~V~V~~G~ 125 (186)
..+++.+|+||| +++.++||.+++ .|- --+.|.+|.|.+ +|.
T Consensus 13 ~~~~v~~G~tiL-~a~~~~gI~iP~------iCy~~~l~pi~sCd~ClVEi-dG~ 59 (978)
T COG3383 13 RSIEVEEGTTIL-RAANRNGIEIPH------ICYHESLGPIGSCDTCLVEI-DGK 59 (978)
T ss_pred eEEecCCChHHH-HHHHhcCCcccc------eeccCCCCcccccceEEEEe-cCc
Confidence 478999999999 999999999998 573 246899999995 566
No 53
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=93.27 E-value=0.2 Score=40.91 Aligned_cols=43 Identities=28% Similarity=0.583 Sum_probs=32.6
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCc
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~ 125 (186)
+++++.++++|| ++|++. +.+.+ ....|+ .|.||.|-|.|. |+
T Consensus 13 ~~~~~~p~~~Ll-~~LRd~-l~ltg---tk~GC~-~g~CGACtVlvD-G~ 55 (156)
T COG2080 13 VELDVDPRTPLL-DVLRDE-LGLTG---TKKGCG-HGQCGACTVLVD-GE 55 (156)
T ss_pred EEEEeCCCChHH-HHHHHh-cCCCC---cCCCCC-CccCCceEEEEC-Ce
Confidence 578999999999 888754 22322 235798 999999999885 55
No 54
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=92.61 E-value=0.17 Score=51.56 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=31.4
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEecCc
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~ 125 (186)
+++++.++++|| +.|++.| +.+ ....|.|.|.||.|.|.|. |.
T Consensus 12 ~~~~~~~~~~l~-~~LR~~~--~~~---~k~g~c~~g~CGaCtv~~d-g~ 54 (956)
T PRK09800 12 QELTVNPGENVQ-KLLFNMG--MHS---VRNSDDGFGFAGSDAIIFN-GN 54 (956)
T ss_pred EEEecCCCCCHH-HHHHHCC--CCc---cccCCCCcccCCCCEEEEC-Ce
Confidence 477889999999 9998844 443 1223334999999999984 54
No 55
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.77 E-value=0.57 Score=47.62 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=52.2
Q ss_pred CCCcEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccc-c--CCc--ccCCCCceeecCCEEEEecCcccC
Q 029865 54 EKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYA-T--YGK--VMNCGGGGSCGTCIVEIIDGKDLL 128 (186)
Q Consensus 54 ~~~~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~-~--~~~--~~~CgG~G~CGTC~V~V~~G~~~l 128 (186)
....|+|+|.+ +.+++.+|+||. .||+.+|+.+-. + |+. ...|. .|.|-.|.|.|..|....
T Consensus 9 ~~~~~~~~~dg-----------~~~~~~~g~t~a-~al~a~g~~~~~~s~~~~~prg~~c~-~~~~~~c~v~i~~~~~~~ 75 (985)
T TIGR01372 9 RSRPLRFTFDG-----------KSYSGFAGDTLA-SALLANGVHLVGRSFKYHRPRGILTA-GVEEPNALVTVGSGAQRE 75 (985)
T ss_pred CCCeEEEEECC-----------EEeecCCCCHHH-HHHHhCCCeeecccCCCCCCCccccc-CccCCCeEEEECCCcCCC
Confidence 34578888744 478899999999 999999987543 2 233 37897 688999999996552100
Q ss_pred CCCChHHHhccCCCCCCeEEeeEeEee
Q 029865 129 NERTNTELRYLKKKPESWRLACQTIVG 155 (186)
Q Consensus 129 ~~~t~~E~~~L~~~~~g~RLACQ~~v~ 155 (186)
....||++.+.
T Consensus 76 ----------------~~~~ac~~~~~ 86 (985)
T TIGR01372 76 ----------------PNTRATTQELY 86 (985)
T ss_pred ----------------CCccceeEEcc
Confidence 13458999887
No 56
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=91.14 E-value=0.33 Score=40.95 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=29.3
Q ss_pred HHHHHCCCCccccCCcccCCCCceeecCCEEEEec
Q 029865 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIID 123 (186)
Q Consensus 89 ~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~ 123 (186)
+++++.|++....+...+.|+ .|.||+|.+...+
T Consensus 197 ~~L~~~Gv~~~~~~~~~~~~~-~g~c~~c~~~~~~ 230 (246)
T cd06218 197 ELAAERGVPCQVSLEERMACG-IGACLGCVVKTKD 230 (246)
T ss_pred HHHHhcCCCEEEEecccccCc-cceecccEEEeec
Confidence 678899998776777889998 8999999999875
No 57
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=89.94 E-value=0.29 Score=41.27 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=28.6
Q ss_pred HHHHHCCCCccccCCcccCCCCceeecCCEEEE
Q 029865 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEI 121 (186)
Q Consensus 89 ~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V 121 (186)
+.+.+.|++..-+....+.|| .|.|+.|.|+.
T Consensus 197 ~~l~~~Gv~~~~s~e~~m~Cg-~G~C~~C~~~~ 228 (248)
T cd06219 197 ELTRPYGIPTVVSLNPIMVDG-TGMCGACRVTV 228 (248)
T ss_pred HHHHHcCCCEEEEecccccCc-cceeeeEEEEe
Confidence 677899999888888889998 99999999996
No 58
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=89.80 E-value=0.31 Score=42.11 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=28.7
Q ss_pred HHHHHCCCCccccCCcccCCCCceeecCCEEEE
Q 029865 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEI 121 (186)
Q Consensus 89 ~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V 121 (186)
+++.+.|+++..++...+.|| .|.|+.|.|..
T Consensus 198 ~~l~~~gv~~~~sle~~M~CG-~G~C~~C~v~~ 229 (281)
T PRK06222 198 ELTKPYGIKTIVSLNPIMVDG-TGMCGACRVTV 229 (281)
T ss_pred HHHHhcCCCEEEECcccccCc-ccccceeEEEE
Confidence 677889999888899999996 99999999985
No 59
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=89.42 E-value=0.39 Score=45.12 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=30.6
Q ss_pred EEE-EecCCchHHHHHHHHC-CCCccccCCcccCCCCceeecCCEEEEe
Q 029865 76 ERA-KAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEII 122 (186)
Q Consensus 76 ~~v-~v~~G~tLLr~al~~~-GI~l~~~~~~~~~CgG~G~CGTC~V~V~ 122 (186)
+++ ++.++++|| +.|++. |+. +....|+ .|.||.|.|.|.
T Consensus 10 ~~~~~~~~~~~ll-~~lR~~~~l~-----g~k~gC~-~G~CGaCtv~~~ 51 (467)
T TIGR02963 10 VTLSDVDPTRTLL-DYLREDAGLT-----GTKEGCA-EGDCGACTVVVG 51 (467)
T ss_pred EEeecCCCCCCHH-HHHHHhcCCC-----CCCcccC-CCCCCceEEEEE
Confidence 356 588999999 998864 542 2344698 899999999993
No 60
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=89.26 E-value=0.23 Score=42.11 Aligned_cols=31 Identities=26% Similarity=0.738 Sum_probs=27.3
Q ss_pred HHHHHCCCC---ccccCCcccCCCCceeecCCEEE
Q 029865 89 NIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVE 120 (186)
Q Consensus 89 ~al~~~GI~---l~~~~~~~~~CgG~G~CGTC~V~ 120 (186)
++|.+.|++ +..+.+..+.|+ .|.||+|+|.
T Consensus 207 ~~L~~~Gv~~~~i~~~~~~~~~~~-~g~c~~c~~~ 240 (253)
T cd06221 207 KELLKLGVPEEQIWVSLERRMKCG-VGKCGHCQIG 240 (253)
T ss_pred HHHHHcCCCHHHEEEehhhccccC-CccccCcccC
Confidence 788999997 777788888997 9999999987
No 61
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=88.82 E-value=0.59 Score=47.64 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=31.7
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCccc-CCCCceeecCCEEEEecCc
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVM-NCGGGGSCGTCIVEIIDGK 125 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~~~~~~-~CgG~G~CGTC~V~V~~G~ 125 (186)
+++++.++++|| +.|++.|+. + ... .|+ .|.||.|.|.|. |.
T Consensus 8 ~~~~~~~~~~l~-~~LR~~~l~--~---~k~~~c~-~g~CGaCtv~~d-g~ 50 (951)
T TIGR03313 8 QTLECKLGENVQ-TLLFNMGMH--S---VRNSDDG-FGFAGSDAILFN-GV 50 (951)
T ss_pred EEEecCCCCCHH-HHHHHCCCC--C---CcCCCCC-cccCCCCEEEEC-Ce
Confidence 467889999999 999997543 1 112 475 999999999984 54
No 62
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=88.72 E-value=0.24 Score=42.99 Aligned_cols=38 Identities=29% Similarity=0.677 Sum_probs=31.2
Q ss_pred hHHHHHHHHCCCC---ccccCCcccCCCCceeecCCEEEEecC
Q 029865 85 KLLRNIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVEIIDG 124 (186)
Q Consensus 85 tLLr~al~~~GI~---l~~~~~~~~~CgG~G~CGTC~V~V~~G 124 (186)
.+. +.+.+.|++ +..++..++.|| -|.|+.|.|....|
T Consensus 226 ~v~-~~L~~~Gv~~~~i~~~l~~~m~cg-~g~c~~c~~~~~~~ 266 (289)
T PRK08345 226 FVF-KELINRGYRPERIYVTLERRMRCG-IGKCGHCIVGTSTS 266 (289)
T ss_pred HHH-HHHHHcCCCHHHEEEEehhccccc-CcccCCCccCCCCc
Confidence 344 778899996 777788899998 99999999997654
No 63
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=88.38 E-value=0.32 Score=41.02 Aligned_cols=34 Identities=29% Similarity=0.805 Sum_probs=27.6
Q ss_pred HHHHHCCCCccccCCcccCCCCceeecCCEEEEec
Q 029865 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIID 123 (186)
Q Consensus 89 ~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~ 123 (186)
+++.++|++........+.|| -|.||+|.+.+..
T Consensus 198 ~~l~~~Gv~~~~~~e~~m~cg-~G~C~~C~~~~~~ 231 (250)
T PRK00054 198 EILKEKKVPAYVSLERRMKCG-IGACGACVCDTET 231 (250)
T ss_pred HHHHHcCCcEEEEEcccccCc-CcccCcCCcccCC
Confidence 677889987666667778897 9999999998654
No 64
>PRK05802 hypothetical protein; Provisional
Probab=87.82 E-value=0.62 Score=41.44 Aligned_cols=33 Identities=33% Similarity=0.633 Sum_probs=26.7
Q ss_pred HHHHH--CCCCccccCCcccCCCCceeecCCEEEEe
Q 029865 89 NIMLD--NKIELYATYGKVMNCGGGGSCGTCIVEII 122 (186)
Q Consensus 89 ~al~~--~GI~l~~~~~~~~~CgG~G~CGTC~V~V~ 122 (186)
+.+.+ .+|.+..++..++.|| -|.||.|.|...
T Consensus 271 ~~l~~~~~~i~~~~Sle~~M~CG-~G~Cg~C~v~~~ 305 (320)
T PRK05802 271 EYLDKLNEKIKLSCSNNAKMCCG-EGICGACTVRYG 305 (320)
T ss_pred HHHhhhcCCceEEEeCCCeeeCc-CccCCeeEEEEC
Confidence 44455 6888877788899998 999999999963
No 65
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=86.95 E-value=0.46 Score=39.53 Aligned_cols=33 Identities=24% Similarity=0.630 Sum_probs=26.2
Q ss_pred HHHHHCCCCccccCCcccCCCCceeecCCEEEEe
Q 029865 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEII 122 (186)
Q Consensus 89 ~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~ 122 (186)
+++++.|++..-.+...+.|+ .|.||+|.|...
T Consensus 184 ~~L~~~g~~~~i~~e~f~~cg-~g~C~~C~v~~~ 216 (233)
T cd06220 184 EILDERGVRAQFSLERYMKCG-IGICGSCCIDPT 216 (233)
T ss_pred HHHHhcCCcEEEEecccccCc-CCCcCccEeccC
Confidence 678888985444466678887 999999999975
No 66
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=86.61 E-value=0.8 Score=48.28 Aligned_cols=39 Identities=31% Similarity=0.660 Sum_probs=30.2
Q ss_pred EEEecCCchHHHHHHHHC-CCCccccCCcccCCCCceeecCCEEEEe
Q 029865 77 RAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEII 122 (186)
Q Consensus 77 ~v~v~~G~tLLr~al~~~-GI~l~~~~~~~~~CgG~G~CGTC~V~V~ 122 (186)
...+.++++|| +.|++. |+ . +....|+ .|.||.|.|.|.
T Consensus 14 ~~~~~~~~~ll-~~LR~~~~l--~---gtk~gC~-~G~CGaCtV~~~ 53 (1330)
T TIGR02969 14 EKNVDPETMLL-PYLRKKLRL--T---GTKYGCG-GGGCGACTVMIS 53 (1330)
T ss_pred eccCCCCCcHH-HHHHhhcCC--C---CCCCCcC-CCCCCCcEEEEC
Confidence 45788999999 988864 43 2 2345698 899999999996
No 67
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=85.85 E-value=0.81 Score=46.05 Aligned_cols=41 Identities=32% Similarity=0.770 Sum_probs=31.2
Q ss_pred EEEecCCchHHHHHHHHC-CCCccccCCcccCCCCceeecCCEEEEecCc
Q 029865 77 RAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (186)
Q Consensus 77 ~v~v~~G~tLLr~al~~~-GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~ 125 (186)
.+++.++++|| +.|++. |+. +....|+ .|.||.|.|.| +|.
T Consensus 9 ~~~~~~~~~l~-~~lr~~~~~~-----~~k~gc~-~g~cgactv~~-dg~ 50 (848)
T TIGR03311 9 EVDVNEEKKLL-EFLREDLRLT-----GVKNGCG-EGACGACTVIV-NGK 50 (848)
T ss_pred EeeCCCCCcHH-HHHHHhcCCC-----cCCCCCC-CCCCCCcEEEE-CCe
Confidence 56788999999 988864 542 1234698 89999999999 454
No 68
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=84.62 E-value=0.47 Score=40.63 Aligned_cols=31 Identities=32% Similarity=0.842 Sum_probs=26.1
Q ss_pred HHHHHCCCC---ccccCCcccCCCCceeecCCEEE
Q 029865 89 NIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVE 120 (186)
Q Consensus 89 ~al~~~GI~---l~~~~~~~~~CgG~G~CGTC~V~ 120 (186)
+.+++.|++ +..++...+.|+ .|.||+|.|.
T Consensus 209 ~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~ 242 (263)
T PRK08221 209 LEFLKRGIKEENIWVSYERKMCCG-VGKCGHCKID 242 (263)
T ss_pred HHHHHcCCCHHHEEEEecceeEcc-CcccCCcccC
Confidence 677889995 556788889998 9999999975
No 69
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=84.34 E-value=0.55 Score=40.13 Aligned_cols=31 Identities=32% Similarity=0.899 Sum_probs=25.6
Q ss_pred HHHHHCCCC---ccccCCcccCCCCceeecCCEEE
Q 029865 89 NIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVE 120 (186)
Q Consensus 89 ~al~~~GI~---l~~~~~~~~~CgG~G~CGTC~V~ 120 (186)
+.+.+.|++ +...++..+.|+ .|.||.|+|.
T Consensus 207 ~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~ 240 (261)
T TIGR02911 207 QELLKKGIKEENIWVSYERKMCCG-VGKCGHCKID 240 (261)
T ss_pred HHHHHcCCCHHHEEEEeccceecc-CcCCCCcccC
Confidence 667889985 556678889998 9999999876
No 70
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=83.83 E-value=1.7 Score=42.02 Aligned_cols=46 Identities=17% Similarity=0.421 Sum_probs=35.5
Q ss_pred EEEEecCCchHHHHHHHHCCCCcccc-CCcccCCCCceeecCCEEEEecC
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELYAT-YGKVMNCGGGGSCGTCIVEIIDG 124 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~~~-~~~~~~CgG~G~CGTC~V~V~~G 124 (186)
..+.+.+|.|+| +|....|++++-. |+.+.+=. |-|--|.|+|...
T Consensus 40 ~~v~v~pg~tvl-qac~~~gv~iprfcyh~rlsva--gncrmclveveks 86 (708)
T KOG2282|consen 40 QSVMVEPGTTVL-QACAKVGVDIPRFCYHERLSVA--GNCRMCLVEVEKS 86 (708)
T ss_pred eeEeeCCCcHHH-HHHHHhCCCcchhhhhhhhhhc--cceeEEEEEeccC
Confidence 378899999999 9999999999974 44443333 6788888888654
No 71
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=81.07 E-value=1.5 Score=36.56 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=26.0
Q ss_pred HHHHHC--CCCccccCCcccCCCCceeecCCEEEEe
Q 029865 89 NIMLDN--KIELYATYGKVMNCGGGGSCGTCIVEII 122 (186)
Q Consensus 89 ~al~~~--GI~l~~~~~~~~~CgG~G~CGTC~V~V~ 122 (186)
+.+.+. ++++..+....+.|+ .|.||+|.+...
T Consensus 195 ~~l~~~g~~~~~~~s~~~~m~Cg-~G~C~~C~~~~~ 229 (243)
T cd06192 195 EALDEWLQLIKASVSNNSPMCCG-IGICGACTIETK 229 (243)
T ss_pred HHHHhhcCCceEEEECCccccCc-cccccceEEEeC
Confidence 555665 566777788889998 899999999854
No 72
>PLN00192 aldehyde oxidase
Probab=78.69 E-value=2.5 Score=44.72 Aligned_cols=40 Identities=23% Similarity=0.549 Sum_probs=30.1
Q ss_pred EE-EecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEe
Q 029865 77 RA-KAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEII 122 (186)
Q Consensus 77 ~v-~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~ 122 (186)
++ ++.++++|| +.|++. ..+. +....|+ .|.||.|.|.|.
T Consensus 16 ~~~~~~p~~~Ll-~~LR~~-~~lt---gtK~gC~-~G~CGaCtV~v~ 56 (1344)
T PLN00192 16 ELSSVDPSTTLL-EFLRTQ-TPFK---SVKLGCG-EGGCGACVVLLS 56 (1344)
T ss_pred EeccCCCCCcHH-HHHHHh-hCCC---CcCCCCC-CCcCCCcEEEEe
Confidence 55 588999999 988864 2233 2345698 999999999994
No 73
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=77.45 E-value=2.1 Score=42.05 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=28.0
Q ss_pred HHHHHCCCCccccCCcccCCCCceeecCCEEEE
Q 029865 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEI 121 (186)
Q Consensus 89 ~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V 121 (186)
+++.+.|++...++...+.|| .|.|+.|.|..
T Consensus 198 ~~l~~~gv~~~~Sle~~M~CG-~G~C~~C~v~~ 229 (752)
T PRK12778 198 LLTKKYGIPTIVSLNTIMVDG-TGMCGACRVTV 229 (752)
T ss_pred HHHHHcCCCEEEeCcccccCc-ccccCcceeEe
Confidence 677889999888888899997 99999999953
No 74
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=69.49 E-value=4 Score=41.86 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=27.2
Q ss_pred HHHHHCCCCccccCCcccCCCCceeecCCEEEE
Q 029865 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEI 121 (186)
Q Consensus 89 ~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V 121 (186)
+++...||+...++..++.|+ -|.||.|.|.+
T Consensus 198 ~~~~~~gi~~~vSle~~M~cG-~G~Cg~C~v~~ 229 (1006)
T PRK12775 198 ETTRPFGVKTMVSLNAIMVDG-TGMCGSCRVTV 229 (1006)
T ss_pred HHHHHCCCcEEECChhheeCc-cceeCCCEeee
Confidence 566788998777778889997 99999999975
No 75
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=69.01 E-value=4.8 Score=41.12 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=28.5
Q ss_pred HHHHHCCCCccccCCcccCCCCceeecCCEEEEe
Q 029865 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEII 122 (186)
Q Consensus 89 ~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~ 122 (186)
+++.+.|++...++..++.|+ -|.|+.|.|.+.
T Consensus 864 ~~l~~~Gv~~~vSlE~~M~CG-~G~C~~C~v~~~ 896 (944)
T PRK12779 864 DLTKPYGVKTVASLNSIMVDA-TGMCGACMVPVT 896 (944)
T ss_pred HHHHHcCCCeEEeecccccCC-CeeeCeeeeeee
Confidence 667889999877788889997 999999999864
No 76
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=68.05 E-value=2.8 Score=26.55 Aligned_cols=20 Identities=50% Similarity=1.195 Sum_probs=14.5
Q ss_pred ccCCCCceeecCCEEEEecCc
Q 029865 105 VMNCGGGGSCGTCIVEIIDGK 125 (186)
Q Consensus 105 ~~~CgG~G~CGTC~V~V~~G~ 125 (186)
++.|+ -|.|+.|.+...++.
T Consensus 3 ~M~CG-~G~C~~C~v~~~~~~ 22 (40)
T PF10418_consen 3 RMACG-VGACGGCVVPVKDGD 22 (40)
T ss_dssp --SSS-SSSS-TTEEECSSTT
T ss_pred cccCC-CcEeCCcEeeeecCC
Confidence 46797 999999999988653
No 77
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=58.08 E-value=21 Score=33.70 Aligned_cols=39 Identities=23% Similarity=0.486 Sum_probs=28.2
Q ss_pred EEEEecCCchHHHHHHH-HCCCCccccCCcccCCCCceeecCCEEEE
Q 029865 76 ERAKAISGEKLLRNIML-DNKIELYATYGKVMNCGGGGSCGTCIVEI 121 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~-~~GI~l~~~~~~~~~CgG~G~CGTC~V~V 121 (186)
..-.+++.+||| +-|+ +.+..=. .=-|. .|-||.|.|-|
T Consensus 19 ~l~~v~P~~TlL-d~LR~d~~ltGt-----KEGCA-EGDCGACTVlV 58 (493)
T COG4630 19 VLSDVPPTTTLL-DYLRLDRRLTGT-----KEGCA-EGDCGACTVLV 58 (493)
T ss_pred EeecCCcchHHH-HHHHHhcccccc-----ccccc-CCCcCceEEEE
Confidence 345688999999 8776 5554321 12497 99999999976
No 78
>PLN02906 xanthine dehydrogenase
Probab=57.47 E-value=9.6 Score=40.40 Aligned_cols=33 Identities=33% Similarity=0.775 Sum_probs=25.1
Q ss_pred CchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEe
Q 029865 83 GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEII 122 (186)
Q Consensus 83 G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~ 122 (186)
+++|| +.|++ ..+.+ ....|+ .|.||.|.|.|.
T Consensus 1 ~~~ll-~~LR~--~~l~g---~k~gC~-~g~CGaCtv~~~ 33 (1319)
T PLN02906 1 HQTLL-EYLRD--LGLTG---TKLGCG-EGGCGACTVMVS 33 (1319)
T ss_pred CCcHH-HHHHh--CCCCC---CCCCcC-CCCCCCeEEEEC
Confidence 36888 88886 44443 345798 899999999996
No 79
>PRK01777 hypothetical protein; Validated
Probab=43.45 E-value=59 Score=24.20 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=27.9
Q ss_pred cEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCccc
Q 029865 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYA 100 (186)
Q Consensus 57 ~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l~~ 100 (186)
+|+|-|..++ .+....+++++|.|+- +|+...||....
T Consensus 5 ~v~V~ya~~~-----~~~~~~l~vp~GtTv~-dal~~sgi~~~~ 42 (95)
T PRK01777 5 RVEVVYALPE-----RQYLQRLTLQEGATVE-EAIRASGLLELR 42 (95)
T ss_pred EEEEEEECCC-----ceEEEEEEcCCCCcHH-HHHHHcCCCccC
Confidence 4666665542 2334689999999997 999999997653
No 80
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=41.73 E-value=26 Score=25.75 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=25.9
Q ss_pred cEEEEEecCCCCCCCCcceEEEEecCCchHHHHHHHHCCCCc
Q 029865 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIEL 98 (186)
Q Consensus 57 ~V~v~f~~~~~~~d~~~~v~~v~v~~G~tLLr~al~~~GI~l 98 (186)
+|+|.|..++ ..+ ...+++++|.|+. +|+..+|+.-
T Consensus 2 ~VeV~yA~p~----~q~-~~~l~vp~GtTv~-~Ai~~Sgi~~ 37 (84)
T PF03658_consen 2 RVEVAYALPE----RQV-ILTLEVPEGTTVA-QAIEASGILE 37 (84)
T ss_dssp EEEEEEEETT----CEE-EEEEEEETT-BHH-HHHHHHTHHH
T ss_pred EEEEEEECCC----eEE-EEEEECCCcCcHH-HHHHHcCchh
Confidence 4677776653 222 3589999999998 9999999863
No 81
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=39.25 E-value=28 Score=36.73 Aligned_cols=41 Identities=27% Similarity=0.520 Sum_probs=30.2
Q ss_pred EEEecCCchHHHHHHHHCCCCccccCCcccCCCCceeecCCEEEEec
Q 029865 77 RAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIID 123 (186)
Q Consensus 77 ~v~v~~G~tLLr~al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~ 123 (186)
+-.++++.||+ . .+|....+.+ ..+.|+ .|.||.|.|-|..
T Consensus 14 ~~~vdP~~TL~-~-fLR~k~~ltg---tKlgC~-EGGCGaCtv~ls~ 54 (1257)
T KOG0430|consen 14 VELLPPDLTLN-T-FLREKLGLTG---TKLGCG-EGGCGACTVVLSK 54 (1257)
T ss_pred EecCCcchhHH-H-HHHHhcCCcc---eeeccC-CCCccceEEEEec
Confidence 33477888987 5 5566676664 356798 8999999998864
No 82
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=30.87 E-value=42 Score=27.36 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=38.2
Q ss_pred CCCCceeecCCEEEEecCcccCCCCChHHHhccCCC-CCCeEEeeEeEeeeccCCCceEEEEcchHhHH
Q 029865 107 NCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK-PESWRLACQTIVGNKENSGKCRIKYLKVEALC 174 (186)
Q Consensus 107 ~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~-~~g~RLACQ~~v~~~~~~gdv~V~~lP~~~~~ 174 (186)
.|.-+-.||+|..+=.=|...+ .+ |..+ ...+++-|-.... .|+.+++.+|+.++.
T Consensus 19 ~c~~~S~CgsC~a~~~CGs~~l-------~k-Lg~~~~h~~~~~t~~pL~----~Gq~VeiGi~EkslL 75 (150)
T COG3086 19 SCQRQSACGSCAARAGCGSGLL-------SK-LGPQTEHIFRVETDEPLE----PGQKVELGIEEKSLL 75 (150)
T ss_pred EeeccCccccchhhcccchHHH-------HH-hccccceEEEEecCCcCC----CCCEEEEccCcccHH
Confidence 4988889999999876666322 22 2443 3567777766554 488888899988753
No 83
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=29.22 E-value=23 Score=36.94 Aligned_cols=40 Identities=28% Similarity=0.703 Sum_probs=29.9
Q ss_pred CCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHHhccCCCCCCeEEeeEe
Q 029865 94 NKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQT 152 (186)
Q Consensus 94 ~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLACQ~ 152 (186)
.+++.-.+..-.+.|.-.|.||.|.+.+ .|+ ..+.++|.-
T Consensus 960 ~~~~~i~svns~M~c~m~giC~qC~~~~-~G~------------------~k~vfaC~~ 999 (1028)
T PRK06567 960 ENTEIIVSVNSSMQCMMKGICGQCIQKV-KGE------------------QKYIFACSQ 999 (1028)
T ss_pred CCCcEEEecCcHHHHHhhhhhhhheEEe-cCe------------------eEEEEEecC
Confidence 3555555566678998899999999999 454 237789977
No 84
>PF09791 Oxidored-like: Oxidoreductase-like protein, N-terminal; InterPro: IPR019180 This entry represents the N-terminal domain of various oxidoreductase-like proteins whose exact function is, as yet, unknown.
Probab=29.09 E-value=36 Score=22.52 Aligned_cols=27 Identities=19% Similarity=0.567 Sum_probs=15.3
Q ss_pred CCCCccccCCcccCCCCceeecCCEEEE
Q 029865 94 NKIELYATYGKVMNCGGGGSCGTCIVEI 121 (186)
Q Consensus 94 ~GI~l~~~~~~~~~CgG~G~CGTC~V~V 121 (186)
+||.++........|-|+| |..|.-.+
T Consensus 4 ~gv~~P~~P~~p~~CCgSG-C~~CVwd~ 30 (48)
T PF09791_consen 4 AGVPVPPKPPEPDECCGSG-CAPCVWDV 30 (48)
T ss_pred CCCCCCcCccCcccccccC-CccchhHH
Confidence 4555544322334677788 98886443
No 85
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=26.07 E-value=50 Score=24.05 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=15.7
Q ss_pred EEEcchHhHHHHHHHhhc
Q 029865 165 IKYLKVEALCSLYRAVGY 182 (186)
Q Consensus 165 V~~lP~~~~~~~~~~~~~ 182 (186)
+..+|...|+.+||..|.
T Consensus 6 ~D~VP~~~wk~F~R~LGL 23 (77)
T cd08815 6 MDAVPARRWKEFVRTLGL 23 (77)
T ss_pred eccCChHHHHHHHHHcCC
Confidence 467999999999999884
No 86
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=24.28 E-value=67 Score=27.93 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=25.6
Q ss_pred CCCcEEEEEecCCCCC---C-----CCcceEEEEecCCchHHHHHH
Q 029865 54 EKPEIELEFIAPRAGD---D-----GSYPVERAKAISGEKLLRNIM 91 (186)
Q Consensus 54 ~~~~V~v~f~~~~~~~---d-----~~~~v~~v~v~~G~tLLr~al 91 (186)
++..|+++.+.+...+ + -....+.+.+.+|+||| +++
T Consensus 221 ~~~~vh~E~F~~~~~~~~~~~~~~~~~~s~~~~~~~~g~t~l-ea~ 265 (266)
T COG1018 221 PDDRVHLEGFGPMLKDTAALLPFTTLARSGKEVRVPPGQTLL-EAA 265 (266)
T ss_pred ChhcEEEeecCCCCccccccccchhhccccceEecCCCchHH-Hhh
Confidence 5678999998865211 1 12235688999999999 876
No 87
>KOG1069 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp46 [Translation, ribosomal structure and biogenesis]
Probab=23.68 E-value=60 Score=27.97 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=24.7
Q ss_pred HHHHCCCCccccCCcccCCCCceeecCCEEEEecCcccCCCCChHHH
Q 029865 90 IMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTEL 136 (186)
Q Consensus 90 al~~~GI~l~~~~~~~~~CgG~G~CGTC~V~V~~G~~~l~~~t~~E~ 136 (186)
||.++||++.+ -.|+-|-+.+.+|...+.|....|.
T Consensus 117 ALvDaGIpl~~-----------mfcai~~~~~~d~~lv~Dpt~~qek 152 (217)
T KOG1069|consen 117 ALVDAGIPLRS-----------MFCAISCALHEDGVLVLDPTAKQEK 152 (217)
T ss_pred HHHhcCCchHH-----------hhhhceEEEecCccEEECCcHHhhh
Confidence 68999999986 2356677888888655555444444
No 88
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=21.87 E-value=85 Score=22.65 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=13.4
Q ss_pred EEEEecCCchHHHHHHHHCCCCcc
Q 029865 76 ERAKAISGEKLLRNIMLDNKIELY 99 (186)
Q Consensus 76 ~~v~v~~G~tLLr~al~~~GI~l~ 99 (186)
++..|+.|+||- .+..+.|++..
T Consensus 3 ~~~~V~~GDtLs-~iF~~~gls~~ 25 (85)
T PF04225_consen 3 QEYTVKSGDTLS-TIFRRAGLSAS 25 (85)
T ss_dssp -EEE--TT--HH-HHHHHTT--HH
T ss_pred cEEEECCCCcHH-HHHHHcCCCHH
Confidence 577889999987 99999998744
Done!