BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029867
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
H3k4me3 Peptide
Length = 75
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 107 VAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDC 156
V VYC C +PY+ M++C+ CKDWFH SC+G+ EEA +D + C +C
Sbjct: 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNC 58
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 107 VAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDC 156
V VYC C +PY+ M++C+ C+DWFH SC+G+ E+A +D + C +C
Sbjct: 4 VPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNC 53
>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
Length = 79
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 97 AATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDC 156
++G V VYC C PYN + M++C C+DWFH SC+G+ E A +D + C DC
Sbjct: 1 GSSGSSGMALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDC 60
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 109 VYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCS 157
VYC C PY+ + M++C+ CKDWFH SC+G+ A +D + C +C+
Sbjct: 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCA 86
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 109 VYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAKRSLNT 168
+YC C+ PY+ + C+ C++W+H C+G+ EA+ +D ++C C S DA L
Sbjct: 9 LYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAXTVLTP 68
Query: 169 FS 170
+
Sbjct: 69 LT 70
>pdb|1W4S|A Chain A, Crystal Structure Of The Proximal Bah Domain Of Polybromo
Length = 174
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 1 MRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDV 60
+ PA+++ P++ +E++ D + W+YRP E+ + KE+F SD+Y+
Sbjct: 35 VEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFKSDYYNK 94
Query: 61 QSAHTIEGKCTVHTFKNYTKL--ENVGAED-YFCRFEYKAATGGFTPDRVAVYCKCEMPY 117
I GKC V K Y KL EN ED Y C Y A T F ++ + +
Sbjct: 95 VPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIKLWTMPVSSVRF 154
Query: 118 NPDDL 122
P D+
Sbjct: 155 VPRDV 159
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 109 VYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAKRSLNT 168
+YC C+ PY+ + C+ C++W+H C+G+ EA+ +D ++C C S DA L
Sbjct: 9 LYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTVLTP 68
Query: 169 FS 170
+
Sbjct: 69 LT 70
>pdb|2FUI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Human
Bptf In Free State
pdb|2FUU|A Chain A, Nmr Solution Structure Of The Phd Domain From The Human
Bptf In Complex With H3(1-15)k4me3 Peptide
Length = 62
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 109 VYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDA 162
+YC C+ PY+ + C+ C++W+H C+G+ EA+ +D ++C C S DA
Sbjct: 9 LYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDA 62
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 109 VYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDVDAKRSLNT 168
+YC C+ P + + C+ C++W+H C+G+ EA+ +D ++C C S DA L
Sbjct: 9 LYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTVLTP 68
Query: 169 FS 170
+
Sbjct: 69 LT 70
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 105 DRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDH----FLCSDCS 157
D A+YC C P+N + M+ C+ C++WFH C+G++ + L+ ++C +C+
Sbjct: 13 DPNALYCICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68
>pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger Family
Protein
Length = 72
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 105 DRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDC 156
D V CKC + + M+ C+GC W H C+G+ +A FLC C
Sbjct: 13 DNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALP-SKFLCFRC 63
>pdb|1WE9|A Chain A, Solution Structure Of Phd Domain In Nucleic Acid Binding
Protein-like Np_197993
Length = 64
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 113 CEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSS 158
C Y D+ + C+ C+ WFH C+ +T A+ + + C CS+
Sbjct: 12 CGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57
>pdb|2KGG|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger
pdb|2KGI|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger In
Complex With H3(1-9)k4me3
pdb|3GL6|A Chain A, Crystal Structure Of Jarid1a-Phd3 Complexed With H3(1-9)
K4me3 Peptide
Length = 52
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 112 KCEMPYNPDDLMVQCEG-CKDWFHPSCMGMTIEEAKKLDHFLCSDCS 157
C+ P VQC+G C +WFH C+G++ E A+ D ++C +C+
Sbjct: 7 NCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENED-YICINCA 52
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 22/115 (19%)
Query: 5 DSDKPPYVARVEKIEADHRN------NVKVRVRWYYRPEESIGGRRQFHGA-----KELF 53
D+ +P + R+++I + ++K+R+ +YRPE + R ++G+ L+
Sbjct: 342 DAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENT---HRSYNGSYHTDINMLY 398
Query: 54 LSDHYDVQSAHTIEGKCTVHTFKNYTKLENV-----GAEDYFCRFE-YKAATGGF 102
SD V + ++G+CTV ++ LE++ G D F E Y + T F
Sbjct: 399 WSDEEAVVNFSDVQGRCTVEYGEDL--LESIQDYSQGGPDRFYFLEAYNSKTKNF 451
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 3 PADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQS 62
P DS KP Y+ARV + D + W+ +++ G ELFL +
Sbjct: 122 PDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATS--DPLELFLVGECENMQ 179
Query: 63 AHTIEGKCTV 72
I K V
Sbjct: 180 LSYIHSKVKV 189
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 22/115 (19%)
Query: 5 DSDKPPYVARVEKIEADHRN------NVKVRVRWYYRPEESIGGRRQFHGA-----KELF 53
D+ +P + R+++I + ++K+R+ +YRPE + R ++G+ L+
Sbjct: 700 DAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENT---HRSYNGSYHTDINMLY 756
Query: 54 LSDHYDVQSAHTIEGKCTVHTFKNYTKLENV-----GAEDYFCRFE-YKAATGGF 102
SD V + ++G+CTV ++ LE++ G D F E Y + T F
Sbjct: 757 WSDEEAVVNFSDVQGRCTVEYGEDL--LESIQDYSQGGPDRFYFLEAYNSKTKNF 809
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 3 PADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQS 62
P DS KP Y+ARV + D + W+ +++ G ELFL +
Sbjct: 480 PDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATS--DPLELFLVGECENMQ 537
Query: 63 AHTIEGKCTV 72
I K V
Sbjct: 538 LSYIHSKVKV 547
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 5 DSDKPPYVARVEKIEADHRNN-------VKVRVRWYYRPEESIGGRRQFHGA--KELFLS 55
D+ +P + R+++I ++N +K+RV +YRPE + + A L+ S
Sbjct: 342 DAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWS 401
Query: 56 DHYDVQSAHTIEGKCTVHTFKNY---TKLENVGAEDYFCRFE-YKAATGGF 102
D V ++G+CTV ++ ++ ++G + F E Y A + F
Sbjct: 402 DEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNRFYFLEAYNAKSKSF 452
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 3 PADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQS 62
P DS KP Y+ARV + D N W+ +++ G ELFL D +
Sbjct: 123 PDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGATS--DPLELFLVDECEDMQ 180
Query: 63 AHTIEGKCTV 72
I K V
Sbjct: 181 LSYIHSKVKV 190
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 5 DSDKPPYVARVEKIEADHRNN-------VKVRVRWYYRPEESIGGRRQFHGA--KELFLS 55
D+ +P + R+++I ++N +K+RV +YRPE + + A L+ S
Sbjct: 388 DAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWS 447
Query: 56 DHYDVQSAHTIEGKCTVHTFKNY---TKLENVGAEDYFCRFE-YKAATGGF 102
D V ++G+CTV ++ ++ ++G + F E Y A + F
Sbjct: 448 DEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNRFYFLEAYNAKSKSF 498
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 3 PADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQS 62
P DS KP Y+ARV + D N W+ +++ G ELFL D +
Sbjct: 169 PDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGATS--DPLELFLVDECEDMQ 226
Query: 63 AHTIEGKCTV 72
I K V
Sbjct: 227 LSYIHSKVKV 236
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 22/115 (19%)
Query: 5 DSDKPPYVARVEKIEADHRN------NVKVRVRWYYRPEESIGGRRQFHGA-----KELF 53
D+ +P + R+++I + ++K+R+ +YRPE + R ++G+ L+
Sbjct: 261 DAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENT---HRSYNGSYHTDINMLY 317
Query: 54 LSDHYDVQSAHTIEGKCTVHTFKNYTKLENV-----GAEDYFCRFE-YKAATGGF 102
SD V + ++G+CTV ++ LE++ G D F E Y + T F
Sbjct: 318 WSDEEAVVNFSDVQGRCTVEYGEDL--LESIQDYSQGGPDRFYFLEAYNSKTKNF 370
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 3 PADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQS 62
P DS KP Y+ARV + D + W+ +++ G ELFL +
Sbjct: 41 PDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATS--DPLELFLVGECENMQ 98
Query: 63 AHTIEGKCTV 72
I K V
Sbjct: 99 LSYIHSKVKV 108
>pdb|3TEF|A Chain A, Crystal Structure Of The Periplasmic
Catecholate-Siderophore Binding Protein Vctp From Vibrio
Cholerae
Length = 292
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 85 GAEDYFCRFE---YKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMT 141
G DY +++ Y +A F PD +Y + PD +++ K + S + T
Sbjct: 48 GTPDYLAKYKSDKYPSAGSLFEPDFETIYTQ-----KPDLIVIGPRASKSYDELSKIAPT 102
Query: 142 IEEAKKLDHFLCSDCSSDVDAKRSLN-TFSVSPSVEAKVE 180
I A + D R+L F++ P+VEAK+E
Sbjct: 103 IVFAAEADQGYWESTQQQ---WRNLGKVFAIEPAVEAKIE 139
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 119 PDD--LMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDV 160
PDD M+ C+ C DW+H C+G+ +++ F C C++ +
Sbjct: 27 PDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWF-CPKCANKI 69
>pdb|2XB1|A Chain A, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
pdb|2XB1|C Chain C, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
Length = 105
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 113 CEMPYNPDDLMVQCEG-CKDWFHPSCMGMT 141
C N D + CE C+ WFH C GMT
Sbjct: 9 CRSEVNDDQDAILCEASCQKWFHRECTGMT 38
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 111 CKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCS-SDVDAKRSL 166
C C ++ D M+ C+ C W H CMG I+ D +LC C ++D +R++
Sbjct: 31 CICGFTHD-DGYMICCDKCSVWQHIDCMG--IDRQHIPDTYLCERCQPRNLDKERAV 84
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 124 VQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDC 156
+ C+ C+ W+H C G+ E + F C C
Sbjct: 59 IGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKC 91
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 76 KNYTKLENVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHP 135
K KLE+ G YF + K T P VY +M + + E KDW +
Sbjct: 55 KALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQ------LCRKENLKDWMNG 108
Query: 136 SCMGMTIEEAKK 147
C TIEE ++
Sbjct: 109 RC---TIEERER 117
>pdb|2VPE|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPE|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPG|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPG|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 63
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 113 CEMPYNPDDLMVQCEG-CKDWFHPSCMGMT 141
C N D + CE C+ WFH C GMT
Sbjct: 11 CTNEVNDDQDAILCEASCQKWFHRICTGMT 40
>pdb|2DX8|A Chain A, Crystal Structure Analysis Of The Phd Domain Of The
Transcription Coactivator Pygophus
pdb|2DX8|B Chain B, Crystal Structure Analysis Of The Phd Domain Of The
Transcription Coactivator Pygophus
Length = 67
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 113 CEMPYNPDDLMVQCEG-CKDWFHPSCMGMT 141
C N D + CE C+ WFH C GMT
Sbjct: 15 CTNEVNDDQDAILCEASCQKWFHRICTGMT 44
>pdb|2VPB|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 65
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 113 CEMPYNPDDLMVQCEG-CKDWFHPSCMGMT 141
C N D + CE C+ WFH C GMT
Sbjct: 14 CTNEVNDDQDAILCEASCQKWFHRICTGMT 43
>pdb|2VPD|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPD|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 67
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 113 CEMPYNPDDLMVQCEG-CKDWFHPSCMGMT 141
C N D + CE C+ WFH C GMT
Sbjct: 15 CTNEVNDDQDAILCEASCQKWFHRICTGMT 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,033,901
Number of Sequences: 62578
Number of extensions: 246481
Number of successful extensions: 585
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 61
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)